Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275510 | KEH36759.1 | 95.238 | 42 | 2 | 0 | 1 | 42 | 1 | 42 | 1.01e-19 | 85.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275510 | A0A072V402 | 95.238 | 42 | 2 | 0 | 1 | 42 | 1 | 42 | 4.82e-20 | 85.9 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0196150 | Msa0275510 | 0.865031 | 7.929388e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 17 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCACTATGCTTCTTAAT+TGG | 0.204135 | 2_3:-7553534 | Msa0275510:CDS |
| TTTGTTGTCTAGGCTTTATT+TGG | 0.250369 | 2_3:-7552200 | Msa0275510:intron |
| AAAGGTGGTCAAGGCAATTA+AGG | 0.276550 | 2_3:-7552132 | Msa0275510:CDS |
| TGGAAATTTCATTGAGAAGA+AGG | 0.376410 | 2_3:+7552171 | None:intergenic |
| AAGGGAAGATTTATATTATG+AGG | 0.381424 | 2_3:-7553561 | Msa0275510:CDS |
| CCTCACCATTCTTCTCCACT+TGG | 0.404004 | 2_3:+7553591 | None:intergenic |
| TTGTCTAGGCTTTATTTGGC+AGG | 0.414002 | 2_3:-7552196 | Msa0275510:intron |
| GGAAATTTCATTGAGAAGAA+GGG | 0.481161 | 2_3:+7552172 | None:intergenic |
| AAGGTGGTCAAGGCAATTAA+GGG | 0.508135 | 2_3:-7552131 | Msa0275510:CDS |
| CAAAGTCTGAGTTATGCAAA+AGG | 0.512173 | 2_3:-7552150 | Msa0275510:CDS |
| ATTTGCCAAGTGGAGAAGAA+TGG | 0.577151 | 2_3:-7553596 | Msa0275510:CDS |
| AGTTATGCAAAAGGTGGTCA+AGG | 0.580736 | 2_3:-7552141 | Msa0275510:CDS |
| TGAGTAAAAGATTTGCCAAG+TGG | 0.642626 | 2_3:-7553606 | Msa0275510:CDS |
| AGAATGGTGAGGCAACAACA+AGG | 0.651845 | 2_3:-7553580 | Msa0275510:CDS |
| AGTCTGAGTTATGCAAAAGG+TGG | 0.678088 | 2_3:-7552147 | Msa0275510:CDS |
| CCAAGTGGAGAAGAATGGTG+AGG | 0.693513 | 2_3:-7553591 | Msa0275510:CDS |
| GAATGGTGAGGCAACAACAA+GGG | 0.705787 | 2_3:-7553579 | Msa0275510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | chr2_3:7552469-7552488 | Msa0275510:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | - | chr2_3:7552468-7552487 | Msa0275510:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | + | chr2_3:7552469-7552488 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | + | chr2_3:7552468-7552487 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | - | chr2_3:7552469-7552488 | Msa0275510:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | - | chr2_3:7552468-7552487 | Msa0275510:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | + | chr2_3:7552469-7552488 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | + | chr2_3:7552468-7552487 | None:intergenic | 0.0% |
| !!! | AAATATATTTTATGTATCAT+TGG | + | chr2_3:7553210-7553229 | None:intergenic | 10.0% |
| !! | AATGATACATAAAATATATT+TGG | - | chr2_3:7553209-7553228 | Msa0275510:intron | 10.0% |
| !!! | AAAAAAAAAAAAAAGTATCT+TGG | + | chr2_3:7553259-7553278 | None:intergenic | 10.0% |
| !!! | AAATATATTTTATGTATCAT+TGG | + | chr2_3:7553210-7553229 | None:intergenic | 10.0% |
| !! | AATGATACATAAAATATATT+TGG | - | chr2_3:7553209-7553228 | Msa0275510:intron | 10.0% |
| !!! | AAAAAAAAAAAAAAGTATCT+TGG | + | chr2_3:7553259-7553278 | None:intergenic | 10.0% |
| !! | GGATTATTAATAATAATTAG+AGG | - | chr2_3:7552883-7552902 | Msa0275510:intron | 15.0% |
| !!! | TACAATTTTTATTATATTGC+AGG | + | chr2_3:7553069-7553088 | None:intergenic | 15.0% |
| !!! | GTTAACTTGATTTTTTTTTT+TGG | + | chr2_3:7553123-7553142 | None:intergenic | 15.0% |
| !! | ATTCTACAAATTAAGTTAAA+AGG | - | chr2_3:7553285-7553304 | Msa0275510:intron | 15.0% |
| !! | TTCTACAAATTAAGTTAAAA+GGG | - | chr2_3:7553286-7553305 | Msa0275510:intron | 15.0% |
| !! | ATAAATCATATTAAGTTCTA+AGG | - | chr2_3:7553483-7553502 | Msa0275510:intron | 15.0% |
| !! | GGATTATTAATAATAATTAG+AGG | - | chr2_3:7552883-7552902 | Msa0275510:intron | 15.0% |
| !!! | TACAATTTTTATTATATTGC+AGG | + | chr2_3:7553069-7553088 | None:intergenic | 15.0% |
| !!! | GTTAACTTGATTTTTTTTTT+TGG | + | chr2_3:7553123-7553142 | None:intergenic | 15.0% |
| !! | ATTCTACAAATTAAGTTAAA+AGG | - | chr2_3:7553285-7553304 | Msa0275510:intron | 15.0% |
| !! | TTCTACAAATTAAGTTAAAA+GGG | - | chr2_3:7553286-7553305 | Msa0275510:intron | 15.0% |
| !! | ATAAATCATATTAAGTTCTA+AGG | - | chr2_3:7553483-7553502 | Msa0275510:intron | 15.0% |
| !! | TTTAGTATTTATTGTTTGTC+TGG | - | chr2_3:7552737-7552756 | Msa0275510:intron | 20.0% |
| !! | TAAGTAAAAGTAATTTCTGT+TGG | + | chr2_3:7552859-7552878 | None:intergenic | 20.0% |
| !! | TCTAAATACCATTTAGAAAA+AGG | + | chr2_3:7552916-7552935 | None:intergenic | 20.0% |
| !! | AATTAATATATAGTTCAGCA+AGG | + | chr2_3:7553181-7553200 | None:intergenic | 20.0% |
| !!! | CTGAACTATATATTAATTTG+TGG | - | chr2_3:7553183-7553202 | Msa0275510:intron | 20.0% |
| !! | TACATAAAATATATTTGGCT+TGG | - | chr2_3:7553214-7553233 | Msa0275510:intron | 20.0% |
| !!! | AAAAAAAAAAGTATCTTGGA+TGG | + | chr2_3:7553255-7553274 | None:intergenic | 20.0% |
| !!! | AAACAAGATTTTATATCATG+TGG | - | chr2_3:7553619-7553638 | Msa0275510:CDS | 20.0% |
| !! | TTTAGTATTTATTGTTTGTC+TGG | - | chr2_3:7552737-7552756 | Msa0275510:intron | 20.0% |
| !! | TAAGTAAAAGTAATTTCTGT+TGG | + | chr2_3:7552859-7552878 | None:intergenic | 20.0% |
| !! | TCTAAATACCATTTAGAAAA+AGG | + | chr2_3:7552916-7552935 | None:intergenic | 20.0% |
| !! | AATTAATATATAGTTCAGCA+AGG | + | chr2_3:7553181-7553200 | None:intergenic | 20.0% |
| !!! | CTGAACTATATATTAATTTG+TGG | - | chr2_3:7553183-7553202 | Msa0275510:intron | 20.0% |
| !! | TACATAAAATATATTTGGCT+TGG | - | chr2_3:7553214-7553233 | Msa0275510:intron | 20.0% |
| !!! | AAAAAAAAAAGTATCTTGGA+TGG | + | chr2_3:7553255-7553274 | None:intergenic | 20.0% |
| ! | AAGGGAAGATTTATATTATG+AGG | - | chr2_3:7552160-7552179 | Msa0275510:CDS | 25.0% |
| ! | TAATTTCTGTTGGAATTAGT+TGG | + | chr2_3:7552849-7552868 | None:intergenic | 25.0% |
| !!! | GAAATTACTTTTACTTAGAC+AGG | - | chr2_3:7552862-7552881 | Msa0275510:intron | 25.0% |
| !! | GTCAATTACCTTTTTCTAAA+TGG | - | chr2_3:7552905-7552924 | Msa0275510:intron | 25.0% |
| ! | GTTACATAATTAGATACCAA+TGG | + | chr2_3:7552952-7552971 | None:intergenic | 25.0% |
| ! | TCTAATTATGTAACCTTACT+TGG | - | chr2_3:7552958-7552977 | Msa0275510:intron | 25.0% |
| ! | AATGTTGAATTTACCAAGTA+AGG | + | chr2_3:7552974-7552993 | None:intergenic | 25.0% |
| ! | AATCAAGTTAACTATAGCTA+AGG | - | chr2_3:7553131-7553150 | Msa0275510:intron | 25.0% |
| ! | TAAAAGGGTAGATAACATAT+AGG | - | chr2_3:7553301-7553320 | Msa0275510:intron | 25.0% |
| ! | AAAAGGGTAGATAACATATA+GGG | - | chr2_3:7553302-7553321 | Msa0275510:intron | 25.0% |
| ! | TAGATAACATATAGGGTAAT+AGG | - | chr2_3:7553309-7553328 | Msa0275510:intron | 25.0% |
| ! | AGATAACATATAGGGTAATA+GGG | - | chr2_3:7553310-7553329 | Msa0275510:intron | 25.0% |
| !! | TATAATTGGTGACTTGAAAA+CGG | + | chr2_3:7553426-7553445 | None:intergenic | 25.0% |
| ! | TAATGGAAGAAATAATGTTG+TGG | + | chr2_3:7553460-7553479 | None:intergenic | 25.0% |
| !!! | AAAGAACATTTTTGTTGTCT+AGG | - | chr2_3:7553511-7553530 | Msa0275510:intron | 25.0% |
| ! | AAGGGAAGATTTATATTATG+AGG | - | chr2_3:7552160-7552179 | Msa0275510:CDS | 25.0% |
| ! | TAATTTCTGTTGGAATTAGT+TGG | + | chr2_3:7552849-7552868 | None:intergenic | 25.0% |
| !!! | GAAATTACTTTTACTTAGAC+AGG | - | chr2_3:7552862-7552881 | Msa0275510:intron | 25.0% |
| !! | GTCAATTACCTTTTTCTAAA+TGG | - | chr2_3:7552905-7552924 | Msa0275510:intron | 25.0% |
| ! | GTTACATAATTAGATACCAA+TGG | + | chr2_3:7552952-7552971 | None:intergenic | 25.0% |
| ! | TCTAATTATGTAACCTTACT+TGG | - | chr2_3:7552958-7552977 | Msa0275510:intron | 25.0% |
| ! | AATGTTGAATTTACCAAGTA+AGG | + | chr2_3:7552974-7552993 | None:intergenic | 25.0% |
| ! | AATCAAGTTAACTATAGCTA+AGG | - | chr2_3:7553131-7553150 | Msa0275510:intron | 25.0% |
| ! | TAAAAGGGTAGATAACATAT+AGG | - | chr2_3:7553301-7553320 | Msa0275510:intron | 25.0% |
| ! | AAAAGGGTAGATAACATATA+GGG | - | chr2_3:7553302-7553321 | Msa0275510:intron | 25.0% |
| ! | TAGATAACATATAGGGTAAT+AGG | - | chr2_3:7553309-7553328 | Msa0275510:intron | 25.0% |
| ! | AGATAACATATAGGGTAATA+GGG | - | chr2_3:7553310-7553329 | Msa0275510:intron | 25.0% |
| !! | TATAATTGGTGACTTGAAAA+CGG | + | chr2_3:7553426-7553445 | None:intergenic | 25.0% |
| ! | TAATGGAAGAAATAATGTTG+TGG | + | chr2_3:7553460-7553479 | None:intergenic | 25.0% |
| !!! | AAAGAACATTTTTGTTGTCT+AGG | - | chr2_3:7553511-7553530 | Msa0275510:intron | 25.0% |
| CCTAAAACTAAAAGCTGATT+AGG | + | chr2_3:7552253-7552272 | None:intergenic | 30.0% | |
| !!! | CCTAATCAGCTTTTAGTTTT+AGG | - | chr2_3:7552250-7552269 | Msa0275510:intron | 30.0% |
| GTGTATGTAATAACATCAAG+TGG | - | chr2_3:7552379-7552398 | Msa0275510:intron | 30.0% | |
| !! | GAGATTTTACATTTCTAGGT+TGG | + | chr2_3:7552412-7552431 | None:intergenic | 30.0% |
| AAAGTGAAAATCACACCTTA+AGG | - | chr2_3:7552574-7552593 | Msa0275510:intron | 30.0% | |
| ! | TTTTATCAAGTCACACCTTA+AGG | + | chr2_3:7552592-7552611 | None:intergenic | 30.0% |
| ACTAAAACAAAGAACTGCTA+GGG | + | chr2_3:7552723-7552742 | None:intergenic | 30.0% | |
| TACTAAAACAAAGAACTGCT+AGG | + | chr2_3:7552724-7552743 | None:intergenic | 30.0% | |
| !! | TTTGTTGTCTAGGCTTTATT+TGG | - | chr2_3:7553521-7553540 | Msa0275510:intron | 30.0% |
| GGAAATTTCATTGAGAAGAA+GGG | + | chr2_3:7553552-7553571 | None:intergenic | 30.0% | |
| TGGAAATTTCATTGAGAAGA+AGG | + | chr2_3:7553553-7553572 | None:intergenic | 30.0% | |
| CCTAAAACTAAAAGCTGATT+AGG | + | chr2_3:7552253-7552272 | None:intergenic | 30.0% | |
| !!! | CCTAATCAGCTTTTAGTTTT+AGG | - | chr2_3:7552250-7552269 | Msa0275510:intron | 30.0% |
| GTGTATGTAATAACATCAAG+TGG | - | chr2_3:7552379-7552398 | Msa0275510:intron | 30.0% | |
| !! | GAGATTTTACATTTCTAGGT+TGG | + | chr2_3:7552412-7552431 | None:intergenic | 30.0% |
| AAAGTGAAAATCACACCTTA+AGG | - | chr2_3:7552574-7552593 | Msa0275510:intron | 30.0% | |
| ! | TTTTATCAAGTCACACCTTA+AGG | + | chr2_3:7552592-7552611 | None:intergenic | 30.0% |
| ACTAAAACAAAGAACTGCTA+GGG | + | chr2_3:7552723-7552742 | None:intergenic | 30.0% | |
| TACTAAAACAAAGAACTGCT+AGG | + | chr2_3:7552724-7552743 | None:intergenic | 30.0% | |
| !! | TTTGTTGTCTAGGCTTTATT+TGG | - | chr2_3:7553521-7553540 | Msa0275510:intron | 30.0% |
| GGAAATTTCATTGAGAAGAA+GGG | + | chr2_3:7553552-7553571 | None:intergenic | 30.0% | |
| TGGAAATTTCATTGAGAAGA+AGG | + | chr2_3:7553553-7553572 | None:intergenic | 30.0% | |
| TGAGTAAAAGATTTGCCAAG+TGG | - | chr2_3:7552115-7552134 | Msa0275510:CDS | 35.0% | |
| GCATCACTATGCTTCTTAAT+TGG | - | chr2_3:7552187-7552206 | Msa0275510:CDS | 35.0% | |
| TCTACCTAGATATAGCTCAA+TGG | - | chr2_3:7552293-7552312 | Msa0275510:intron | 35.0% | |
| CAATCCATTGAGCTATATCT+AGG | + | chr2_3:7552300-7552319 | None:intergenic | 35.0% | |
| ! | GGAGGAGATTTTACATTTCT+AGG | + | chr2_3:7552416-7552435 | None:intergenic | 35.0% |
| ! | ATAGAAGACACCTTTTGTGA+AGG | - | chr2_3:7552526-7552545 | Msa0275510:intron | 35.0% |
| CTAAAAGACACCTTCACAAA+AGG | + | chr2_3:7552539-7552558 | None:intergenic | 35.0% | |
| TTGATAAAAGACACCACCAA+AGG | - | chr2_3:7552603-7552622 | Msa0275510:intron | 35.0% | |
| TGATAAAAGACACCACCAAA+GGG | - | chr2_3:7552604-7552623 | Msa0275510:intron | 35.0% | |
| TAAAACAAAGAACTGCTAGG+GGG | + | chr2_3:7552721-7552740 | None:intergenic | 35.0% | |
| CTAAAACAAAGAACTGCTAG+GGG | + | chr2_3:7552722-7552741 | None:intergenic | 35.0% | |
| ! | ATAGTCAAGCATACCTGTTT+TGG | - | chr2_3:7552774-7552793 | Msa0275510:intron | 35.0% |
| GCAAAGAATTATGCCAAAAC+AGG | + | chr2_3:7552790-7552809 | None:intergenic | 35.0% | |
| AGAAACTTAGTTAGCACCAT+TGG | - | chr2_3:7552933-7552952 | Msa0275510:intron | 35.0% | |
| !! | TAAGGTTGTTTCTCTATCAC+AGG | - | chr2_3:7553149-7553168 | Msa0275510:intron | 35.0% |
| GCATCTACAATTCCATTATC+AGG | - | chr2_3:7553400-7553419 | Msa0275510:intron | 35.0% | |
| ! | TGGAGGAGAGAGTATATAAT+TGG | + | chr2_3:7553440-7553459 | None:intergenic | 35.0% |
| TGGAAGAAATAATGTTGTGG+AGG | + | chr2_3:7553457-7553476 | None:intergenic | 35.0% | |
| ! | CTTTTGCATAACTCAGACTT+TGG | + | chr2_3:7553573-7553592 | None:intergenic | 35.0% |
| CAAAGTCTGAGTTATGCAAA+AGG | - | chr2_3:7553571-7553590 | Msa0275510:CDS | 35.0% | |
| TGAGTAAAAGATTTGCCAAG+TGG | - | chr2_3:7552115-7552134 | Msa0275510:CDS | 35.0% | |
| GCATCACTATGCTTCTTAAT+TGG | - | chr2_3:7552187-7552206 | Msa0275510:CDS | 35.0% | |
| TCTACCTAGATATAGCTCAA+TGG | - | chr2_3:7552293-7552312 | Msa0275510:intron | 35.0% | |
| CAATCCATTGAGCTATATCT+AGG | + | chr2_3:7552300-7552319 | None:intergenic | 35.0% | |
| ! | GGAGGAGATTTTACATTTCT+AGG | + | chr2_3:7552416-7552435 | None:intergenic | 35.0% |
| ! | ATAGAAGACACCTTTTGTGA+AGG | - | chr2_3:7552526-7552545 | Msa0275510:intron | 35.0% |
| CTAAAAGACACCTTCACAAA+AGG | + | chr2_3:7552539-7552558 | None:intergenic | 35.0% | |
| TTGATAAAAGACACCACCAA+AGG | - | chr2_3:7552603-7552622 | Msa0275510:intron | 35.0% | |
| TGATAAAAGACACCACCAAA+GGG | - | chr2_3:7552604-7552623 | Msa0275510:intron | 35.0% | |
| TAAAACAAAGAACTGCTAGG+GGG | + | chr2_3:7552721-7552740 | None:intergenic | 35.0% | |
| CTAAAACAAAGAACTGCTAG+GGG | + | chr2_3:7552722-7552741 | None:intergenic | 35.0% | |
| ! | ATAGTCAAGCATACCTGTTT+TGG | - | chr2_3:7552774-7552793 | Msa0275510:intron | 35.0% |
| GCAAAGAATTATGCCAAAAC+AGG | + | chr2_3:7552790-7552809 | None:intergenic | 35.0% | |
| AGAAACTTAGTTAGCACCAT+TGG | - | chr2_3:7552933-7552952 | Msa0275510:intron | 35.0% | |
| !! | TAAGGTTGTTTCTCTATCAC+AGG | - | chr2_3:7553149-7553168 | Msa0275510:intron | 35.0% |
| GCATCTACAATTCCATTATC+AGG | - | chr2_3:7553400-7553419 | Msa0275510:intron | 35.0% | |
| ! | TGGAGGAGAGAGTATATAAT+TGG | + | chr2_3:7553440-7553459 | None:intergenic | 35.0% |
| TGGAAGAAATAATGTTGTGG+AGG | + | chr2_3:7553457-7553476 | None:intergenic | 35.0% | |
| ! | CTTTTGCATAACTCAGACTT+TGG | + | chr2_3:7553573-7553592 | None:intergenic | 35.0% |
| CAAAGTCTGAGTTATGCAAA+AGG | - | chr2_3:7553571-7553590 | Msa0275510:CDS | 35.0% | |
| ATTTGCCAAGTGGAGAAGAA+TGG | - | chr2_3:7552125-7552144 | Msa0275510:CDS | 40.0% | |
| ! | TTTTGTTACAAGCCACCCTT+TGG | + | chr2_3:7552622-7552641 | None:intergenic | 40.0% |
| AAAACAAAGAACTGCTAGGG+GGG | + | chr2_3:7552720-7552739 | None:intergenic | 40.0% | |
| ACATATAGGGTAATAGGGAC+AGG | - | chr2_3:7553315-7553334 | Msa0275510:intron | 40.0% | |
| CATATAGGGTAATAGGGACA+GGG | - | chr2_3:7553316-7553335 | Msa0275510:intron | 40.0% | |
| TTGCTGCAACACATCCTAAA+AGG | + | chr2_3:7553355-7553374 | None:intergenic | 40.0% | |
| !!! | TTTTAGGATGTGTTGCAGCA+AGG | - | chr2_3:7553354-7553373 | Msa0275510:intron | 40.0% |
| CAGTGTGATATAGACCACTT+TGG | - | chr2_3:7553378-7553397 | Msa0275510:intron | 40.0% | |
| TGGAATTGTAGATGCCAAAG+TGG | + | chr2_3:7553395-7553414 | None:intergenic | 40.0% | |
| ACTTGAAAACGGCCTGATAA+TGG | + | chr2_3:7553415-7553434 | None:intergenic | 40.0% | |
| !! | TTGTCTAGGCTTTATTTGGC+AGG | - | chr2_3:7553525-7553544 | Msa0275510:intron | 40.0% |
| AGTCTGAGTTATGCAAAAGG+TGG | - | chr2_3:7553574-7553593 | Msa0275510:CDS | 40.0% | |
| AGTTATGCAAAAGGTGGTCA+AGG | - | chr2_3:7553580-7553599 | Msa0275510:CDS | 40.0% | |
| AAAGGTGGTCAAGGCAATTA+AGG | - | chr2_3:7553589-7553608 | Msa0275510:CDS | 40.0% | |
| AAGGTGGTCAAGGCAATTAA+GGG | - | chr2_3:7553590-7553609 | Msa0275510:CDS | 40.0% | |
| ATTTGCCAAGTGGAGAAGAA+TGG | - | chr2_3:7552125-7552144 | Msa0275510:CDS | 40.0% | |
| ! | TTTTGTTACAAGCCACCCTT+TGG | + | chr2_3:7552622-7552641 | None:intergenic | 40.0% |
| AAAACAAAGAACTGCTAGGG+GGG | + | chr2_3:7552720-7552739 | None:intergenic | 40.0% | |
| ACATATAGGGTAATAGGGAC+AGG | - | chr2_3:7553315-7553334 | Msa0275510:intron | 40.0% | |
| CATATAGGGTAATAGGGACA+GGG | - | chr2_3:7553316-7553335 | Msa0275510:intron | 40.0% | |
| TTGCTGCAACACATCCTAAA+AGG | + | chr2_3:7553355-7553374 | None:intergenic | 40.0% | |
| !!! | TTTTAGGATGTGTTGCAGCA+AGG | - | chr2_3:7553354-7553373 | Msa0275510:intron | 40.0% |
| CAGTGTGATATAGACCACTT+TGG | - | chr2_3:7553378-7553397 | Msa0275510:intron | 40.0% | |
| TGGAATTGTAGATGCCAAAG+TGG | + | chr2_3:7553395-7553414 | None:intergenic | 40.0% | |
| ACTTGAAAACGGCCTGATAA+TGG | + | chr2_3:7553415-7553434 | None:intergenic | 40.0% | |
| !! | TTGTCTAGGCTTTATTTGGC+AGG | - | chr2_3:7553525-7553544 | Msa0275510:intron | 40.0% |
| AGTCTGAGTTATGCAAAAGG+TGG | - | chr2_3:7553574-7553593 | Msa0275510:CDS | 40.0% | |
| AGTTATGCAAAAGGTGGTCA+AGG | - | chr2_3:7553580-7553599 | Msa0275510:CDS | 40.0% | |
| AAAGGTGGTCAAGGCAATTA+AGG | - | chr2_3:7553589-7553608 | Msa0275510:CDS | 40.0% | |
| AAGGTGGTCAAGGCAATTAA+GGG | - | chr2_3:7553590-7553609 | Msa0275510:CDS | 40.0% | |
| AGAATGGTGAGGCAACAACA+AGG | - | chr2_3:7552141-7552160 | Msa0275510:CDS | 45.0% | |
| GAATGGTGAGGCAACAACAA+GGG | - | chr2_3:7552142-7552161 | Msa0275510:CDS | 45.0% | |
| AGAGAGAGAGAGAATGAGTG+AGG | + | chr2_3:7552437-7552456 | None:intergenic | 45.0% | |
| TAAAAGACACCACCAAAGGG+TGG | - | chr2_3:7552607-7552626 | Msa0275510:intron | 45.0% | |
| GCAACACATCCTAAAAGGAG+TGG | + | chr2_3:7553350-7553369 | None:intergenic | 45.0% | |
| AGAATGGTGAGGCAACAACA+AGG | - | chr2_3:7552141-7552160 | Msa0275510:CDS | 45.0% | |
| GAATGGTGAGGCAACAACAA+GGG | - | chr2_3:7552142-7552161 | Msa0275510:CDS | 45.0% | |
| AGAGAGAGAGAGAATGAGTG+AGG | + | chr2_3:7552437-7552456 | None:intergenic | 45.0% | |
| TAAAAGACACCACCAAAGGG+TGG | - | chr2_3:7552607-7552626 | Msa0275510:intron | 45.0% | |
| GCAACACATCCTAAAAGGAG+TGG | + | chr2_3:7553350-7553369 | None:intergenic | 45.0% | |
| !! | TTAATATGATTTATATATAA+TGG | + | chr2_3:7553477-7553496 | None:intergenic | 5.0% |
| !! | TTAATATGATTTATATATAA+TGG | + | chr2_3:7553477-7553496 | None:intergenic | 5.0% |
| CCTCACCATTCTTCTCCACT+TGG | + | chr2_3:7552133-7552152 | None:intergenic | 50.0% | |
| CCAAGTGGAGAAGAATGGTG+AGG | - | chr2_3:7552130-7552149 | Msa0275510:CDS | 50.0% | |
| GAGAGAGAGAATGAGTGAGG+AGG | + | chr2_3:7552434-7552453 | None:intergenic | 50.0% | |
| TGTTACAAGCCACCCTTTGG+TGG | + | chr2_3:7552619-7552638 | None:intergenic | 50.0% | |
| ATAGGGTAATAGGGACAGGG+AGG | - | chr2_3:7553319-7553338 | Msa0275510:intron | 50.0% | |
| TAGGGTAATAGGGACAGGGA+GGG | - | chr2_3:7553320-7553339 | Msa0275510:intron | 50.0% | |
| CCTCACCATTCTTCTCCACT+TGG | + | chr2_3:7552133-7552152 | None:intergenic | 50.0% | |
| CCAAGTGGAGAAGAATGGTG+AGG | - | chr2_3:7552130-7552149 | Msa0275510:CDS | 50.0% | |
| GAGAGAGAGAATGAGTGAGG+AGG | + | chr2_3:7552434-7552453 | None:intergenic | 50.0% | |
| TGTTACAAGCCACCCTTTGG+TGG | + | chr2_3:7552619-7552638 | None:intergenic | 50.0% | |
| ATAGGGTAATAGGGACAGGG+AGG | - | chr2_3:7553319-7553338 | Msa0275510:intron | 50.0% | |
| TAGGGTAATAGGGACAGGGA+GGG | - | chr2_3:7553320-7553339 | Msa0275510:intron | 50.0% | |
| GTAATAGGGACAGGGAGGGT+TGG | - | chr2_3:7553324-7553343 | Msa0275510:intron | 55.0% | |
| !!! | GAGGGTTGGCCACTCCTTTT+AGG | - | chr2_3:7553338-7553357 | Msa0275510:intron | 55.0% |
| GTAATAGGGACAGGGAGGGT+TGG | - | chr2_3:7553324-7553343 | Msa0275510:intron | 55.0% | |
| !!! | GAGGGTTGGCCACTCCTTTT+AGG | - | chr2_3:7553338-7553357 | Msa0275510:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 7552102 | 7553641 | 7552102 | ID=Msa0275510;Name=Msa0275510 |
| chr2_3 | mRNA | 7552102 | 7553641 | 7552102 | ID=Msa0275510-mRNA-1;Parent=Msa0275510;Name=Msa0275510-mRNA-1;_AED=0.14;_eAED=0.56;_QI=0|0|0|1|0|0|2|0|74 |
| chr2_3 | exon | 7553529 | 7553641 | 7553529 | ID=Msa0275510-mRNA-1:exon:3483;Parent=Msa0275510-mRNA-1 |
| chr2_3 | exon | 7552102 | 7552210 | 7552102 | ID=Msa0275510-mRNA-1:exon:3482;Parent=Msa0275510-mRNA-1 |
| chr2_3 | CDS | 7553529 | 7553641 | 7553529 | ID=Msa0275510-mRNA-1:cds;Parent=Msa0275510-mRNA-1 |
| chr2_3 | CDS | 7552102 | 7552210 | 7552102 | ID=Msa0275510-mRNA-1:cds;Parent=Msa0275510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
