Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196150 | KEH36759.1 | 95.238 | 42 | 2 | 0 | 1 | 42 | 1 | 42 | 1.01e-19 | 85.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196150 | A0A072V402 | 95.238 | 42 | 2 | 0 | 1 | 42 | 1 | 42 | 4.82e-20 | 85.9 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0103000 | Msa0196150 | 0.811303 | 7.490660e-51 | -8.615850e-47 |
| Msa0118380 | Msa0196150 | 0.801555 | 8.520440e-49 | -8.615850e-47 |
| Msa0118400 | Msa0196150 | 0.814620 | 1.404131e-51 | -8.615850e-47 |
| Msa0147560 | Msa0196150 | 0.817155 | 3.817758e-52 | -8.615850e-47 |
| Msa0196150 | Msa0275510 | 0.865031 | 7.929388e-65 | -8.615850e-47 |
| Msa0196150 | Msa0885060 | 0.803543 | 3.315787e-49 | -8.615850e-47 |
| Msa0196150 | Msa1424690 | 0.803802 | 2.930011e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 17 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCACTATGCTTCTTAAT+TGG | 0.204135 | 2_1:-13202732 | Msa0196150:CDS |
| TTTGTTGTCTAGGCTTTATT+TGG | 0.250369 | 2_1:-13201208 | Msa0196150:intron |
| AAAGGTGGTCAAGGCAATTA+AGG | 0.276550 | 2_1:-13201140 | Msa0196150:CDS |
| TGGAAATTTCATTGAGAAGA+AGG | 0.376410 | 2_1:+13201179 | None:intergenic |
| AAGGGAAGATTTATATTATG+AGG | 0.381424 | 2_1:-13202759 | Msa0196150:CDS |
| CCTCACCATTCTTCTCCACT+TGG | 0.404004 | 2_1:+13202789 | None:intergenic |
| TTGTCTAGGCTTTATTTGGC+AGG | 0.414002 | 2_1:-13201204 | Msa0196150:intron |
| GGAAATTTCATTGAGAAGAA+GGG | 0.481161 | 2_1:+13201180 | None:intergenic |
| AAGGTGGTCAAGGCAATTAA+GGG | 0.508135 | 2_1:-13201139 | Msa0196150:CDS |
| CAAAGTCTGAGTTATGCAAA+AGG | 0.512173 | 2_1:-13201158 | Msa0196150:CDS |
| ATTTGCCAAGTGGAGAAGAA+TGG | 0.577151 | 2_1:-13202794 | Msa0196150:CDS |
| AGTTATGCAAAAGGTGGTCA+AGG | 0.580736 | 2_1:-13201149 | Msa0196150:CDS |
| TGAGTAAAAGATTTGCCAAG+TGG | 0.642626 | 2_1:-13202804 | Msa0196150:CDS |
| AGAATGGTGAGGCAACAACA+AGG | 0.651845 | 2_1:-13202778 | Msa0196150:CDS |
| AGTCTGAGTTATGCAAAAGG+TGG | 0.678088 | 2_1:-13201155 | Msa0196150:CDS |
| CCAAGTGGAGAAGAATGGTG+AGG | 0.693513 | 2_1:-13202789 | Msa0196150:CDS |
| GAATGGTGAGGCAACAACAA+GGG | 0.705787 | 2_1:-13202777 | Msa0196150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | chr2_1:13201487-13201506 | Msa0196150:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | - | chr2_1:13201486-13201505 | Msa0196150:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | + | chr2_1:13201487-13201506 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | + | chr2_1:13201486-13201505 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | - | chr2_1:13201487-13201506 | Msa0196150:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | - | chr2_1:13201486-13201505 | Msa0196150:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | + | chr2_1:13201487-13201506 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | + | chr2_1:13201486-13201505 | None:intergenic | 0.0% |
| !!! | AAATATATTTTATGTATCAT+TGG | + | chr2_1:13202229-13202248 | None:intergenic | 10.0% |
| !! | AATGATACATAAAATATATT+TGG | - | chr2_1:13202228-13202247 | Msa0196150:intron | 10.0% |
| !!! | AAAAAAAAAAAAAAGTATCT+TGG | + | chr2_1:13202278-13202297 | None:intergenic | 10.0% |
| !!! | AAATATATTTTATGTATCAT+TGG | + | chr2_1:13202229-13202248 | None:intergenic | 10.0% |
| !! | AATGATACATAAAATATATT+TGG | - | chr2_1:13202228-13202247 | Msa0196150:intron | 10.0% |
| !!! | AAAAAAAAAAAAAAGTATCT+TGG | + | chr2_1:13202278-13202297 | None:intergenic | 10.0% |
| !! | GGATTATTAATAATAATTAG+AGG | - | chr2_1:13201935-13201954 | Msa0196150:intron | 15.0% |
| !!! | TACAATTTTTATTATATTGC+AGG | + | chr2_1:13202121-13202140 | None:intergenic | 15.0% |
| !! | ATTCTACAAATTAAGTTAAA+AGG | - | chr2_1:13202305-13202324 | Msa0196150:intron | 15.0% |
| !! | TTCTACAAATTAAGTTAAAA+GGG | - | chr2_1:13202306-13202325 | Msa0196150:intron | 15.0% |
| !! | ATATGATTTATATATAATGG+AGG | + | chr2_1:13202672-13202691 | None:intergenic | 15.0% |
| !! | ATAAATCATATTAAGTTCTA+AGG | - | chr2_1:13202681-13202700 | Msa0196150:intron | 15.0% |
| !! | GGATTATTAATAATAATTAG+AGG | - | chr2_1:13201935-13201954 | Msa0196150:intron | 15.0% |
| !!! | TACAATTTTTATTATATTGC+AGG | + | chr2_1:13202121-13202140 | None:intergenic | 15.0% |
| !! | ATTCTACAAATTAAGTTAAA+AGG | - | chr2_1:13202305-13202324 | Msa0196150:intron | 15.0% |
| !! | TTCTACAAATTAAGTTAAAA+GGG | - | chr2_1:13202306-13202325 | Msa0196150:intron | 15.0% |
| !! | ATATGATTTATATATAATGG+AGG | + | chr2_1:13202672-13202691 | None:intergenic | 15.0% |
| !! | ATAAATCATATTAAGTTCTA+AGG | - | chr2_1:13202681-13202700 | Msa0196150:intron | 15.0% |
| !! | TTTAGTATTTATTGTTTGTC+TGG | - | chr2_1:13201789-13201808 | Msa0196150:intron | 20.0% |
| !! | TAAGTAAAAGTAATTTCTGT+TGG | + | chr2_1:13201911-13201930 | None:intergenic | 20.0% |
| !! | TCTAAATACCATTTAGAAAA+AGG | + | chr2_1:13201968-13201987 | None:intergenic | 20.0% |
| !! | AATTAATATATAGTTCAGCA+AGG | + | chr2_1:13202200-13202219 | None:intergenic | 20.0% |
| !!! | CTGAACTATATATTAATTTG+TGG | - | chr2_1:13202202-13202221 | Msa0196150:intron | 20.0% |
| !! | TACATAAAATATATTTGGCT+TGG | - | chr2_1:13202233-13202252 | Msa0196150:intron | 20.0% |
| !!! | AAAAAAAAAAGTATCTTGGA+TGG | + | chr2_1:13202274-13202293 | None:intergenic | 20.0% |
| !!! | AAACAAGATTTTATATCATG+TGG | - | chr2_1:13202817-13202836 | Msa0196150:CDS | 20.0% |
| !! | TTTAGTATTTATTGTTTGTC+TGG | - | chr2_1:13201789-13201808 | Msa0196150:intron | 20.0% |
| !! | TAAGTAAAAGTAATTTCTGT+TGG | + | chr2_1:13201911-13201930 | None:intergenic | 20.0% |
| !! | TCTAAATACCATTTAGAAAA+AGG | + | chr2_1:13201968-13201987 | None:intergenic | 20.0% |
| !! | AATTAATATATAGTTCAGCA+AGG | + | chr2_1:13202200-13202219 | None:intergenic | 20.0% |
| !!! | CTGAACTATATATTAATTTG+TGG | - | chr2_1:13202202-13202221 | Msa0196150:intron | 20.0% |
| !! | TACATAAAATATATTTGGCT+TGG | - | chr2_1:13202233-13202252 | Msa0196150:intron | 20.0% |
| !!! | AAAAAAAAAAGTATCTTGGA+TGG | + | chr2_1:13202274-13202293 | None:intergenic | 20.0% |
| ! | AAGGGAAGATTTATATTATG+AGG | - | chr2_1:13201168-13201187 | Msa0196150:CDS | 25.0% |
| ! | TAATTTCTGTTGGAATTAGT+TGG | + | chr2_1:13201901-13201920 | None:intergenic | 25.0% |
| !!! | GAAATTACTTTTACTTAGAC+AGG | - | chr2_1:13201914-13201933 | Msa0196150:intron | 25.0% |
| !! | GTCAATTACCTTTTTCTAAA+TGG | - | chr2_1:13201957-13201976 | Msa0196150:intron | 25.0% |
| ! | GTTACATAATTAGATACCAA+TGG | + | chr2_1:13202004-13202023 | None:intergenic | 25.0% |
| ! | TCTAATTATGTAACCTTACT+TGG | - | chr2_1:13202010-13202029 | Msa0196150:intron | 25.0% |
| ! | AATGTTGAATTTACCAAGTA+AGG | + | chr2_1:13202026-13202045 | None:intergenic | 25.0% |
| ! | AATCAAGTTAACTATAGCTA+AGG | - | chr2_1:13202150-13202169 | Msa0196150:intron | 25.0% |
| ! | TAAAAGGGTAGATAACATAT+AGG | - | chr2_1:13202321-13202340 | Msa0196150:intron | 25.0% |
| ! | AAAAGGGTAGATAACATATA+GGG | - | chr2_1:13202322-13202341 | Msa0196150:intron | 25.0% |
| ! | TAGATAACATATAGGGTAAT+AGG | - | chr2_1:13202329-13202348 | Msa0196150:intron | 25.0% |
| ! | AGATAACATATAGGGTAATA+GGG | - | chr2_1:13202330-13202349 | Msa0196150:intron | 25.0% |
| !!! | AAAGAACATTTTTGTTGTCT+AGG | - | chr2_1:13202709-13202728 | Msa0196150:intron | 25.0% |
| ! | AAGGGAAGATTTATATTATG+AGG | - | chr2_1:13201168-13201187 | Msa0196150:CDS | 25.0% |
| ! | TAATTTCTGTTGGAATTAGT+TGG | + | chr2_1:13201901-13201920 | None:intergenic | 25.0% |
| !!! | GAAATTACTTTTACTTAGAC+AGG | - | chr2_1:13201914-13201933 | Msa0196150:intron | 25.0% |
| !! | GTCAATTACCTTTTTCTAAA+TGG | - | chr2_1:13201957-13201976 | Msa0196150:intron | 25.0% |
| ! | GTTACATAATTAGATACCAA+TGG | + | chr2_1:13202004-13202023 | None:intergenic | 25.0% |
| ! | TCTAATTATGTAACCTTACT+TGG | - | chr2_1:13202010-13202029 | Msa0196150:intron | 25.0% |
| ! | AATGTTGAATTTACCAAGTA+AGG | + | chr2_1:13202026-13202045 | None:intergenic | 25.0% |
| ! | AATCAAGTTAACTATAGCTA+AGG | - | chr2_1:13202150-13202169 | Msa0196150:intron | 25.0% |
| ! | TAAAAGGGTAGATAACATAT+AGG | - | chr2_1:13202321-13202340 | Msa0196150:intron | 25.0% |
| ! | AAAAGGGTAGATAACATATA+GGG | - | chr2_1:13202322-13202341 | Msa0196150:intron | 25.0% |
| ! | TAGATAACATATAGGGTAAT+AGG | - | chr2_1:13202329-13202348 | Msa0196150:intron | 25.0% |
| ! | AGATAACATATAGGGTAATA+GGG | - | chr2_1:13202330-13202349 | Msa0196150:intron | 25.0% |
| !!! | AAAGAACATTTTTGTTGTCT+AGG | - | chr2_1:13202709-13202728 | Msa0196150:intron | 25.0% |
| CCTAAAACTAAAAGCTGATT+AGG | + | chr2_1:13201261-13201280 | None:intergenic | 30.0% | |
| !!! | CCTAATCAGCTTTTAGTTTT+AGG | - | chr2_1:13201258-13201277 | Msa0196150:intron | 30.0% |
| GTGTATGTAATAACATCAAG+TGG | - | chr2_1:13201387-13201406 | Msa0196150:intron | 30.0% | |
| !! | GAGATTTTACATTTCTAGGT+TGG | + | chr2_1:13201420-13201439 | None:intergenic | 30.0% |
| ATAAAAGACACCTTCACAAA+AGG | + | chr2_1:13201535-13201554 | None:intergenic | 30.0% | |
| !! | ACACCAACTTACTTTTATGA+AGG | - | chr2_1:13201584-13201603 | Msa0196150:intron | 30.0% |
| ACACCTTCATAAAAGTAAGT+TGG | + | chr2_1:13201590-13201609 | None:intergenic | 30.0% | |
| AAAGTGAAAATCACACCTTA+AGG | - | chr2_1:13201632-13201651 | Msa0196150:intron | 30.0% | |
| ! | TTTTATCAAGTCACACCTTA+AGG | + | chr2_1:13201650-13201669 | None:intergenic | 30.0% |
| ACTAAAACAAAGAACTGCTA+GGG | + | chr2_1:13201775-13201794 | None:intergenic | 30.0% | |
| TACTAAAACAAAGAACTGCT+AGG | + | chr2_1:13201776-13201795 | None:intergenic | 30.0% | |
| ! | ATACTTCCATGACATAGTTT+TGG | - | chr2_1:13202459-13202478 | Msa0196150:intron | 30.0% |
| TAATGGAGGAAATAATGTTG+TGG | + | chr2_1:13202658-13202677 | None:intergenic | 30.0% | |
| !! | TTTGTTGTCTAGGCTTTATT+TGG | - | chr2_1:13202719-13202738 | Msa0196150:intron | 30.0% |
| GGAAATTTCATTGAGAAGAA+GGG | + | chr2_1:13202750-13202769 | None:intergenic | 30.0% | |
| TGGAAATTTCATTGAGAAGA+AGG | + | chr2_1:13202751-13202770 | None:intergenic | 30.0% | |
| CCTAAAACTAAAAGCTGATT+AGG | + | chr2_1:13201261-13201280 | None:intergenic | 30.0% | |
| !!! | CCTAATCAGCTTTTAGTTTT+AGG | - | chr2_1:13201258-13201277 | Msa0196150:intron | 30.0% |
| GTGTATGTAATAACATCAAG+TGG | - | chr2_1:13201387-13201406 | Msa0196150:intron | 30.0% | |
| !! | GAGATTTTACATTTCTAGGT+TGG | + | chr2_1:13201420-13201439 | None:intergenic | 30.0% |
| ATAAAAGACACCTTCACAAA+AGG | + | chr2_1:13201535-13201554 | None:intergenic | 30.0% | |
| !! | ACACCAACTTACTTTTATGA+AGG | - | chr2_1:13201584-13201603 | Msa0196150:intron | 30.0% |
| ACACCTTCATAAAAGTAAGT+TGG | + | chr2_1:13201590-13201609 | None:intergenic | 30.0% | |
| AAAGTGAAAATCACACCTTA+AGG | - | chr2_1:13201632-13201651 | Msa0196150:intron | 30.0% | |
| ! | TTTTATCAAGTCACACCTTA+AGG | + | chr2_1:13201650-13201669 | None:intergenic | 30.0% |
| ACTAAAACAAAGAACTGCTA+GGG | + | chr2_1:13201775-13201794 | None:intergenic | 30.0% | |
| TACTAAAACAAAGAACTGCT+AGG | + | chr2_1:13201776-13201795 | None:intergenic | 30.0% | |
| ! | ATACTTCCATGACATAGTTT+TGG | - | chr2_1:13202459-13202478 | Msa0196150:intron | 30.0% |
| TAATGGAGGAAATAATGTTG+TGG | + | chr2_1:13202658-13202677 | None:intergenic | 30.0% | |
| !! | TTTGTTGTCTAGGCTTTATT+TGG | - | chr2_1:13202719-13202738 | Msa0196150:intron | 30.0% |
| GGAAATTTCATTGAGAAGAA+GGG | + | chr2_1:13202750-13202769 | None:intergenic | 30.0% | |
| TGGAAATTTCATTGAGAAGA+AGG | + | chr2_1:13202751-13202770 | None:intergenic | 30.0% | |
| TGAGTAAAAGATTTGCCAAG+TGG | - | chr2_1:13201123-13201142 | Msa0196150:CDS | 35.0% | |
| GCATCACTATGCTTCTTAAT+TGG | - | chr2_1:13201195-13201214 | Msa0196150:CDS | 35.0% | |
| TCTACCTAGATATAGCTCAA+TGG | - | chr2_1:13201301-13201320 | Msa0196150:intron | 35.0% | |
| CAATCCATTGAGCTATATCT+AGG | + | chr2_1:13201308-13201327 | None:intergenic | 35.0% | |
| ! | GGAGGAGATTTTACATTTCT+AGG | + | chr2_1:13201424-13201443 | None:intergenic | 35.0% |
| ! | ATAGAAGACACCTTTTGTGA+AGG | - | chr2_1:13201522-13201541 | Msa0196150:intron | 35.0% |
| TTGATAAAAGACACCACCAA+AGG | - | chr2_1:13201661-13201680 | Msa0196150:intron | 35.0% | |
| TGATAAAAGACACCACCAAA+GGG | - | chr2_1:13201662-13201681 | Msa0196150:intron | 35.0% | |
| TAAAACAAAGAACTGCTAGG+GGG | + | chr2_1:13201773-13201792 | None:intergenic | 35.0% | |
| CTAAAACAAAGAACTGCTAG+GGG | + | chr2_1:13201774-13201793 | None:intergenic | 35.0% | |
| ! | ATAGTCAAGCATACCTGTTT+TGG | - | chr2_1:13201826-13201845 | Msa0196150:intron | 35.0% |
| GCAAAGAATTATGCCAAAAC+AGG | + | chr2_1:13201842-13201861 | None:intergenic | 35.0% | |
| AGAAACTTAGTTAGCACCAT+TGG | - | chr2_1:13201985-13202004 | Msa0196150:intron | 35.0% | |
| !! | TAAGGTTGTTTCTCTATCAC+AGG | - | chr2_1:13202168-13202187 | Msa0196150:intron | 35.0% |
| GCATCTACAATTCCATTATC+AGG | - | chr2_1:13202420-13202439 | Msa0196150:intron | 35.0% | |
| ! | GAAGTATTTCCCCTTGAAAA+CGG | + | chr2_1:13202446-13202465 | None:intergenic | 35.0% |
| CTTGAAAACGAGTAGCAATT+TGG | + | chr2_1:13202612-13202631 | None:intergenic | 35.0% | |
| ! | TGGAGGAGAGAGTATATAAT+TGG | + | chr2_1:13202638-13202657 | None:intergenic | 35.0% |
| ! | CTTTTGCATAACTCAGACTT+TGG | + | chr2_1:13202771-13202790 | None:intergenic | 35.0% |
| CAAAGTCTGAGTTATGCAAA+AGG | - | chr2_1:13202769-13202788 | Msa0196150:CDS | 35.0% | |
| TGAGTAAAAGATTTGCCAAG+TGG | - | chr2_1:13201123-13201142 | Msa0196150:CDS | 35.0% | |
| GCATCACTATGCTTCTTAAT+TGG | - | chr2_1:13201195-13201214 | Msa0196150:CDS | 35.0% | |
| TCTACCTAGATATAGCTCAA+TGG | - | chr2_1:13201301-13201320 | Msa0196150:intron | 35.0% | |
| CAATCCATTGAGCTATATCT+AGG | + | chr2_1:13201308-13201327 | None:intergenic | 35.0% | |
| ! | GGAGGAGATTTTACATTTCT+AGG | + | chr2_1:13201424-13201443 | None:intergenic | 35.0% |
| ! | ATAGAAGACACCTTTTGTGA+AGG | - | chr2_1:13201522-13201541 | Msa0196150:intron | 35.0% |
| TTGATAAAAGACACCACCAA+AGG | - | chr2_1:13201661-13201680 | Msa0196150:intron | 35.0% | |
| TGATAAAAGACACCACCAAA+GGG | - | chr2_1:13201662-13201681 | Msa0196150:intron | 35.0% | |
| TAAAACAAAGAACTGCTAGG+GGG | + | chr2_1:13201773-13201792 | None:intergenic | 35.0% | |
| CTAAAACAAAGAACTGCTAG+GGG | + | chr2_1:13201774-13201793 | None:intergenic | 35.0% | |
| ! | ATAGTCAAGCATACCTGTTT+TGG | - | chr2_1:13201826-13201845 | Msa0196150:intron | 35.0% |
| GCAAAGAATTATGCCAAAAC+AGG | + | chr2_1:13201842-13201861 | None:intergenic | 35.0% | |
| AGAAACTTAGTTAGCACCAT+TGG | - | chr2_1:13201985-13202004 | Msa0196150:intron | 35.0% | |
| !! | TAAGGTTGTTTCTCTATCAC+AGG | - | chr2_1:13202168-13202187 | Msa0196150:intron | 35.0% |
| GCATCTACAATTCCATTATC+AGG | - | chr2_1:13202420-13202439 | Msa0196150:intron | 35.0% | |
| ! | GAAGTATTTCCCCTTGAAAA+CGG | + | chr2_1:13202446-13202465 | None:intergenic | 35.0% |
| CTTGAAAACGAGTAGCAATT+TGG | + | chr2_1:13202612-13202631 | None:intergenic | 35.0% | |
| ! | TGGAGGAGAGAGTATATAAT+TGG | + | chr2_1:13202638-13202657 | None:intergenic | 35.0% |
| ! | CTTTTGCATAACTCAGACTT+TGG | + | chr2_1:13202771-13202790 | None:intergenic | 35.0% |
| CAAAGTCTGAGTTATGCAAA+AGG | - | chr2_1:13202769-13202788 | Msa0196150:CDS | 35.0% | |
| ATTTGCCAAGTGGAGAAGAA+TGG | - | chr2_1:13201133-13201152 | Msa0196150:CDS | 40.0% | |
| ! | TTTTGTTACAAGCCACCCTT+TGG | + | chr2_1:13201680-13201699 | None:intergenic | 40.0% |
| AAAACAAAGAACTGCTAGGG+GGG | + | chr2_1:13201772-13201791 | None:intergenic | 40.0% | |
| ACATATAGGGTAATAGGGAC+AGG | - | chr2_1:13202335-13202354 | Msa0196150:intron | 40.0% | |
| CATATAGGGTAATAGGGACA+GGG | - | chr2_1:13202336-13202355 | Msa0196150:intron | 40.0% | |
| TTGCTGCAACACATCCTAAA+AGG | + | chr2_1:13202375-13202394 | None:intergenic | 40.0% | |
| !!! | TTTTAGGATGTGTTGCAGCA+AGG | - | chr2_1:13202374-13202393 | Msa0196150:intron | 40.0% |
| CAGTGTGATATAGACCACTT+TGG | - | chr2_1:13202398-13202417 | Msa0196150:intron | 40.0% | |
| TGGAATTGTAGATGCCAAAG+TGG | + | chr2_1:13202415-13202434 | None:intergenic | 40.0% | |
| !! | CATTATCAGGCCGTTTTCAA+GGG | - | chr2_1:13202433-13202452 | Msa0196150:intron | 40.0% |
| !! | ATTATCAGGCCGTTTTCAAG+GGG | - | chr2_1:13202434-13202453 | Msa0196150:intron | 40.0% |
| ATGGCACCAAAACTATGTCA+TGG | + | chr2_1:13202468-13202487 | None:intergenic | 40.0% | |
| !!! | TGACATAGTTTTGGTGCCAT+TGG | - | chr2_1:13202468-13202487 | Msa0196150:intron | 40.0% |
| TGGAGGAAATAATGTTGTGG+AGG | + | chr2_1:13202655-13202674 | None:intergenic | 40.0% | |
| !! | TTGTCTAGGCTTTATTTGGC+AGG | - | chr2_1:13202723-13202742 | Msa0196150:intron | 40.0% |
| AGTCTGAGTTATGCAAAAGG+TGG | - | chr2_1:13202772-13202791 | Msa0196150:CDS | 40.0% | |
| AGTTATGCAAAAGGTGGTCA+AGG | - | chr2_1:13202778-13202797 | Msa0196150:CDS | 40.0% | |
| AAAGGTGGTCAAGGCAATTA+AGG | - | chr2_1:13202787-13202806 | Msa0196150:CDS | 40.0% | |
| AAGGTGGTCAAGGCAATTAA+GGG | - | chr2_1:13202788-13202807 | Msa0196150:CDS | 40.0% | |
| ATTTGCCAAGTGGAGAAGAA+TGG | - | chr2_1:13201133-13201152 | Msa0196150:CDS | 40.0% | |
| ! | TTTTGTTACAAGCCACCCTT+TGG | + | chr2_1:13201680-13201699 | None:intergenic | 40.0% |
| AAAACAAAGAACTGCTAGGG+GGG | + | chr2_1:13201772-13201791 | None:intergenic | 40.0% | |
| ACATATAGGGTAATAGGGAC+AGG | - | chr2_1:13202335-13202354 | Msa0196150:intron | 40.0% | |
| CATATAGGGTAATAGGGACA+GGG | - | chr2_1:13202336-13202355 | Msa0196150:intron | 40.0% | |
| TTGCTGCAACACATCCTAAA+AGG | + | chr2_1:13202375-13202394 | None:intergenic | 40.0% | |
| !!! | TTTTAGGATGTGTTGCAGCA+AGG | - | chr2_1:13202374-13202393 | Msa0196150:intron | 40.0% |
| CAGTGTGATATAGACCACTT+TGG | - | chr2_1:13202398-13202417 | Msa0196150:intron | 40.0% | |
| TGGAATTGTAGATGCCAAAG+TGG | + | chr2_1:13202415-13202434 | None:intergenic | 40.0% | |
| !! | CATTATCAGGCCGTTTTCAA+GGG | - | chr2_1:13202433-13202452 | Msa0196150:intron | 40.0% |
| !! | ATTATCAGGCCGTTTTCAAG+GGG | - | chr2_1:13202434-13202453 | Msa0196150:intron | 40.0% |
| ATGGCACCAAAACTATGTCA+TGG | + | chr2_1:13202468-13202487 | None:intergenic | 40.0% | |
| !!! | TGACATAGTTTTGGTGCCAT+TGG | - | chr2_1:13202468-13202487 | Msa0196150:intron | 40.0% |
| TGGAGGAAATAATGTTGTGG+AGG | + | chr2_1:13202655-13202674 | None:intergenic | 40.0% | |
| !! | TTGTCTAGGCTTTATTTGGC+AGG | - | chr2_1:13202723-13202742 | Msa0196150:intron | 40.0% |
| AGTCTGAGTTATGCAAAAGG+TGG | - | chr2_1:13202772-13202791 | Msa0196150:CDS | 40.0% | |
| AGTTATGCAAAAGGTGGTCA+AGG | - | chr2_1:13202778-13202797 | Msa0196150:CDS | 40.0% | |
| AAAGGTGGTCAAGGCAATTA+AGG | - | chr2_1:13202787-13202806 | Msa0196150:CDS | 40.0% | |
| AAGGTGGTCAAGGCAATTAA+GGG | - | chr2_1:13202788-13202807 | Msa0196150:CDS | 40.0% | |
| AGAATGGTGAGGCAACAACA+AGG | - | chr2_1:13201149-13201168 | Msa0196150:CDS | 45.0% | |
| GAATGGTGAGGCAACAACAA+GGG | - | chr2_1:13201150-13201169 | Msa0196150:CDS | 45.0% | |
| AGAGAGAGAGAGAATGAGTG+AGG | + | chr2_1:13201445-13201464 | None:intergenic | 45.0% | |
| TAAAAGACACCACCAAAGGG+TGG | - | chr2_1:13201665-13201684 | Msa0196150:intron | 45.0% | |
| GCAACACATCCTAAAAGGAG+TGG | + | chr2_1:13202370-13202389 | None:intergenic | 45.0% | |
| CCTTGAAAACGGCCTGATAA+TGG | + | chr2_1:13202435-13202454 | None:intergenic | 45.0% | |
| !! | CCATTATCAGGCCGTTTTCA+AGG | - | chr2_1:13202432-13202451 | Msa0196150:intron | 45.0% |
| CACACATCCACACACATCAA+TGG | + | chr2_1:13202514-13202533 | None:intergenic | 45.0% | |
| TTGATGTGTGTGGATGTGTG+TGG | - | chr2_1:13202514-13202533 | Msa0196150:intron | 45.0% | |
| TGATGTGTGTGGATGTGTGT+GGG | - | chr2_1:13202515-13202534 | Msa0196150:intron | 45.0% | |
| GTGTGTGATGTATGTGTGTG+TGG | - | chr2_1:13202543-13202562 | Msa0196150:intron | 45.0% | |
| TGTGATGTATGTGTGTGTGG+TGG | - | chr2_1:13202546-13202565 | Msa0196150:intron | 45.0% | |
| !! | GCAATTTGGTGCCATAGCTT+TGG | + | chr2_1:13202598-13202617 | None:intergenic | 45.0% |
| AGAATGGTGAGGCAACAACA+AGG | - | chr2_1:13201149-13201168 | Msa0196150:CDS | 45.0% | |
| GAATGGTGAGGCAACAACAA+GGG | - | chr2_1:13201150-13201169 | Msa0196150:CDS | 45.0% | |
| AGAGAGAGAGAGAATGAGTG+AGG | + | chr2_1:13201445-13201464 | None:intergenic | 45.0% | |
| TAAAAGACACCACCAAAGGG+TGG | - | chr2_1:13201665-13201684 | Msa0196150:intron | 45.0% | |
| GCAACACATCCTAAAAGGAG+TGG | + | chr2_1:13202370-13202389 | None:intergenic | 45.0% | |
| CCTTGAAAACGGCCTGATAA+TGG | + | chr2_1:13202435-13202454 | None:intergenic | 45.0% | |
| !! | CCATTATCAGGCCGTTTTCA+AGG | - | chr2_1:13202432-13202451 | Msa0196150:intron | 45.0% |
| CACACATCCACACACATCAA+TGG | + | chr2_1:13202514-13202533 | None:intergenic | 45.0% | |
| TTGATGTGTGTGGATGTGTG+TGG | - | chr2_1:13202514-13202533 | Msa0196150:intron | 45.0% | |
| TGATGTGTGTGGATGTGTGT+GGG | - | chr2_1:13202515-13202534 | Msa0196150:intron | 45.0% | |
| GTGTGTGATGTATGTGTGTG+TGG | - | chr2_1:13202543-13202562 | Msa0196150:intron | 45.0% | |
| TGTGATGTATGTGTGTGTGG+TGG | - | chr2_1:13202546-13202565 | Msa0196150:intron | 45.0% | |
| !! | GCAATTTGGTGCCATAGCTT+TGG | + | chr2_1:13202598-13202617 | None:intergenic | 45.0% |
| !! | TTAATATGATTTATATATAA+TGG | + | chr2_1:13202675-13202694 | None:intergenic | 5.0% |
| !! | TTAATATGATTTATATATAA+TGG | + | chr2_1:13202675-13202694 | None:intergenic | 5.0% |
| CCTCACCATTCTTCTCCACT+TGG | + | chr2_1:13201141-13201160 | None:intergenic | 50.0% | |
| CCAAGTGGAGAAGAATGGTG+AGG | - | chr2_1:13201138-13201157 | Msa0196150:CDS | 50.0% | |
| GAGAGAGAGAATGAGTGAGG+AGG | + | chr2_1:13201442-13201461 | None:intergenic | 50.0% | |
| TGTTACAAGCCACCCTTTGG+TGG | + | chr2_1:13201677-13201696 | None:intergenic | 50.0% | |
| ATAGGGTAATAGGGACAGGG+AGG | - | chr2_1:13202339-13202358 | Msa0196150:intron | 50.0% | |
| TAGGGTAATAGGGACAGGGA+GGG | - | chr2_1:13202340-13202359 | Msa0196150:intron | 50.0% | |
| !! | TTTGGTGCCATTGGTGCCAT+TGG | - | chr2_1:13202477-13202496 | Msa0196150:intron | 50.0% |
| !! | TTGGTGCCATTGGTGCCATT+GGG | - | chr2_1:13202478-13202497 | Msa0196150:intron | 50.0% |
| GATTTCCCCAATGGCACCAA+TGG | + | chr2_1:13202487-13202506 | None:intergenic | 50.0% | |
| AATGGCCAGGATTTCCCCAA+TGG | + | chr2_1:13202496-13202515 | None:intergenic | 50.0% | |
| ATCCTGGCCATTGATGTGTG+TGG | - | chr2_1:13202504-13202523 | Msa0196150:intron | 50.0% | |
| ATCCACACACATCAATGGCC+AGG | + | chr2_1:13202509-13202528 | None:intergenic | 50.0% | |
| GATGTGTGTGGATGTGTGTG+GGG | - | chr2_1:13202516-13202535 | Msa0196150:intron | 50.0% | |
| ! | TGTGGTGGAGATGCAAGCTA+TGG | - | chr2_1:13202561-13202580 | Msa0196150:intron | 50.0% |
| GATGCAAGCTATGGCACCAA+TGG | - | chr2_1:13202570-13202589 | Msa0196150:intron | 50.0% | |
| CACCAATGGCACCAAAGCTA+TGG | - | chr2_1:13202584-13202603 | Msa0196150:intron | 50.0% | |
| !! | TGCCATAGCTTTGGTGCCAT+TGG | + | chr2_1:13202589-13202608 | None:intergenic | 50.0% |
| CCTCACCATTCTTCTCCACT+TGG | + | chr2_1:13201141-13201160 | None:intergenic | 50.0% | |
| CCAAGTGGAGAAGAATGGTG+AGG | - | chr2_1:13201138-13201157 | Msa0196150:CDS | 50.0% | |
| GAGAGAGAGAATGAGTGAGG+AGG | + | chr2_1:13201442-13201461 | None:intergenic | 50.0% | |
| TGTTACAAGCCACCCTTTGG+TGG | + | chr2_1:13201677-13201696 | None:intergenic | 50.0% | |
| ATAGGGTAATAGGGACAGGG+AGG | - | chr2_1:13202339-13202358 | Msa0196150:intron | 50.0% | |
| TAGGGTAATAGGGACAGGGA+GGG | - | chr2_1:13202340-13202359 | Msa0196150:intron | 50.0% | |
| !! | TTTGGTGCCATTGGTGCCAT+TGG | - | chr2_1:13202477-13202496 | Msa0196150:intron | 50.0% |
| !! | TTGGTGCCATTGGTGCCATT+GGG | - | chr2_1:13202478-13202497 | Msa0196150:intron | 50.0% |
| GATTTCCCCAATGGCACCAA+TGG | + | chr2_1:13202487-13202506 | None:intergenic | 50.0% | |
| AATGGCCAGGATTTCCCCAA+TGG | + | chr2_1:13202496-13202515 | None:intergenic | 50.0% | |
| ATCCTGGCCATTGATGTGTG+TGG | - | chr2_1:13202504-13202523 | Msa0196150:intron | 50.0% | |
| ATCCACACACATCAATGGCC+AGG | + | chr2_1:13202509-13202528 | None:intergenic | 50.0% | |
| GATGTGTGTGGATGTGTGTG+GGG | - | chr2_1:13202516-13202535 | Msa0196150:intron | 50.0% | |
| ! | TGTGGTGGAGATGCAAGCTA+TGG | - | chr2_1:13202561-13202580 | Msa0196150:intron | 50.0% |
| GATGCAAGCTATGGCACCAA+TGG | - | chr2_1:13202570-13202589 | Msa0196150:intron | 50.0% | |
| CACCAATGGCACCAAAGCTA+TGG | - | chr2_1:13202584-13202603 | Msa0196150:intron | 50.0% | |
| !! | TGCCATAGCTTTGGTGCCAT+TGG | + | chr2_1:13202589-13202608 | None:intergenic | 50.0% |
| GTAATAGGGACAGGGAGGGT+TGG | - | chr2_1:13202344-13202363 | Msa0196150:intron | 55.0% | |
| !!! | GAGGGTTGGCCACTCCTTTT+AGG | - | chr2_1:13202358-13202377 | Msa0196150:intron | 55.0% |
| !! | TGGTGCCATTGGTGCCATTG+GGG | - | chr2_1:13202479-13202498 | Msa0196150:intron | 55.0% |
| !! | TGGTGCCATTGGGGAAATCC+TGG | - | chr2_1:13202488-13202507 | Msa0196150:intron | 55.0% |
| GTAATAGGGACAGGGAGGGT+TGG | - | chr2_1:13202344-13202363 | Msa0196150:intron | 55.0% | |
| !!! | GAGGGTTGGCCACTCCTTTT+AGG | - | chr2_1:13202358-13202377 | Msa0196150:intron | 55.0% |
| !! | TGGTGCCATTGGTGCCATTG+GGG | - | chr2_1:13202479-13202498 | Msa0196150:intron | 55.0% |
| !! | TGGTGCCATTGGGGAAATCC+TGG | - | chr2_1:13202488-13202507 | Msa0196150:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 13201110 | 13202839 | 13201110 | ID=Msa0196150;Name=Msa0196150 |
| chr2_1 | mRNA | 13201110 | 13202839 | 13201110 | ID=Msa0196150-mRNA-1;Parent=Msa0196150;Name=Msa0196150-mRNA-1;_AED=0.14;_eAED=0.56;_QI=0|0|0|1|0|0|2|0|74 |
| chr2_1 | exon | 13202727 | 13202839 | 13202727 | ID=Msa0196150-mRNA-1:exon:5772;Parent=Msa0196150-mRNA-1 |
| chr2_1 | exon | 13201110 | 13201218 | 13201110 | ID=Msa0196150-mRNA-1:exon:5771;Parent=Msa0196150-mRNA-1 |
| chr2_1 | CDS | 13202727 | 13202839 | 13202727 | ID=Msa0196150-mRNA-1:cds;Parent=Msa0196150-mRNA-1 |
| chr2_1 | CDS | 13201110 | 13201218 | 13201110 | ID=Msa0196150-mRNA-1:cds;Parent=Msa0196150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
