Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275590 | XP_013462754.1 | 99.153 | 236 | 2 | 0 | 1 | 236 | 1 | 236 | 2.77e-172 | 483 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275590 | sp|P24805|TSJT1_TOBAC | 43.624 | 149 | 81 | 2 | 1 | 147 | 1 | 148 | 6.59e-37 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275590 | I3T590 | 99.153 | 236 | 2 | 0 | 1 | 236 | 1 | 236 | 1.32e-172 | 483 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0275590 | Msa1345380 | 0.852984 | 3.225035e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275590 | MtrunA17_Chr2g0287871 | 99.153 | 236 | 2 | 0 | 1 | 236 | 1 | 236 | 2.55e-176 | 483 |
| Msa0275590 | MtrunA17_Chr4g0065571 | 82.700 | 237 | 40 | 1 | 1 | 236 | 1 | 237 | 1.69e-145 | 405 |
| Msa0275590 | MtrunA17_Chr1g0166351 | 47.257 | 237 | 121 | 3 | 1 | 235 | 1 | 235 | 1.31e-73 | 224 |
| Msa0275590 | MtrunA17_Chr1g0204611 | 43.038 | 237 | 131 | 3 | 1 | 235 | 1 | 235 | 4.10e-67 | 207 |
| Msa0275590 | MtrunA17_Chr4g0047531 | 41.949 | 236 | 122 | 5 | 1 | 227 | 64 | 293 | 3.04e-58 | 187 |
| Msa0275590 | MtrunA17_Chr2g0281901 | 40.435 | 230 | 133 | 3 | 1 | 227 | 1 | 229 | 1.18e-57 | 183 |
| Msa0275590 | MtrunA17_Chr2g0317901 | 42.060 | 233 | 126 | 6 | 1 | 227 | 1 | 230 | 8.94e-51 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275590 | AT5G19140.1 | 83.262 | 233 | 39 | 0 | 1 | 233 | 1 | 233 | 2.01e-147 | 410 |
| Msa0275590 | AT5G19140.2 | 78.112 | 233 | 39 | 1 | 1 | 233 | 1 | 221 | 1.96e-134 | 377 |
| Msa0275590 | AT5G19140.3 | 87.952 | 166 | 20 | 0 | 68 | 233 | 32 | 197 | 9.44e-109 | 311 |
| Msa0275590 | AT5G43830.1 | 42.795 | 229 | 128 | 2 | 1 | 227 | 1 | 228 | 1.53e-64 | 201 |
| Msa0275590 | AT3G22850.1 | 42.918 | 233 | 127 | 4 | 1 | 230 | 1 | 230 | 5.67e-62 | 194 |
| Msa0275590 | AT4G27450.1 | 43.966 | 232 | 124 | 4 | 1 | 227 | 1 | 231 | 5.15e-59 | 187 |
| Msa0275590 | AT3G15450.1 | 41.810 | 232 | 128 | 5 | 1 | 227 | 1 | 230 | 6.42e-57 | 182 |
| Msa0275590 | AT3G15450.2 | 43.750 | 192 | 104 | 3 | 1 | 189 | 1 | 191 | 3.67e-48 | 158 |
| Msa0275590 | AT3G15450.3 | 43.787 | 169 | 91 | 3 | 1 | 166 | 1 | 168 | 1.55e-39 | 135 |
Find 97 sgRNAs with CRISPR-Local
Find 382 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGATGCTGATTTGCTTAA+AGG | 0.139816 | 2_3:+7741402 | Msa0275590:CDS |
| CTGGAAAGGTTCCTCTATAT+TGG | 0.254858 | 2_3:+7741346 | Msa0275590:CDS |
| CTGCTAATGAGGAGGAAATT+TGG | 0.258669 | 2_3:+7742310 | Msa0275590:CDS |
| CAGCCGTGTCACTGCAGGTT+GGG | 0.283579 | 2_3:+7736451 | Msa0275590:CDS |
| GAGTAAACCTATTTACATTA+TGG | 0.292540 | 2_3:-7742569 | None:intergenic |
| TGCTAATGAGGAGGAAATTT+GGG | 0.296941 | 2_3:+7742311 | Msa0275590:CDS |
| ACTGCAGTAATCTTATTCTT+TGG | 0.306160 | 2_3:-7742285 | None:intergenic |
| TCATATGATGGATGCATTAA+TGG | 0.311458 | 2_3:+7742500 | Msa0275590:three_prime_UTR |
| TGGAAAGGTTCCTCTATATT+GGG | 0.314487 | 2_3:+7741347 | Msa0275590:CDS |
| CGGCGAATTTGCTGCTGAAA+AGG | 0.343100 | 2_3:+7736409 | Msa0275590:CDS |
| ACGTCTTCGGCGACGGTGTT+CGG | 0.365937 | 2_3:-7736386 | None:intergenic |
| CTAAATTATTAGTTGAAAGA+TGG | 0.383945 | 2_3:-7742792 | None:intergenic |
| CCATCATATGATACTCCATT+TGG | 0.389370 | 2_3:-7742488 | None:intergenic |
| GAAGGGACCATAATGTAAAT+AGG | 0.389382 | 2_3:+7742562 | Msa0275590:three_prime_UTR |
| GGTGTCTCCTCCGGAGGAGC+TGG | 0.391500 | 2_3:+7736350 | Msa0275590:CDS |
| AATCATAAGAACTACTTCAT+TGG | 0.401392 | 2_3:-7741104 | None:intergenic |
| TTAGAGAGAGAAAATATGTT+GGG | 0.401437 | 2_3:+7736309 | Msa0275590:exon |
| AGCAAATTCGCCGACGTCTT+CGG | 0.404314 | 2_3:-7736399 | None:intergenic |
| GGATGCATTAATGGAGTAAT+GGG | 0.406465 | 2_3:+7742509 | Msa0275590:three_prime_UTR |
| CCGGAGGAGCTGGTGGCTGC+TGG | 0.409045 | 2_3:+7736360 | Msa0275590:CDS |
| CCAGCAGCCACCAGCTCCTC+CGG | 0.411220 | 2_3:-7736360 | None:intergenic |
| TACTCATAATTGTGGAGAAT+GGG | 0.413766 | 2_3:+7742587 | Msa0275590:three_prime_UTR |
| GGAAGCTTGAGACAGCAATA+TGG | 0.415780 | 2_3:+7741067 | Msa0275590:CDS |
| CATGTTGTTGGTCATCTTAG+TGG | 0.419413 | 2_3:+7741172 | Msa0275590:CDS |
| GAGATATTCTGCTTGTTTGA+AGG | 0.432657 | 2_3:+7741028 | Msa0275590:CDS |
| TATTACATTCGAAATGCAAC+TGG | 0.435758 | 2_3:-7742690 | None:intergenic |
| AATTTGGGGTGCAACTTTCA+AGG | 0.452853 | 2_3:+7742326 | Msa0275590:CDS |
| TACCCTGCTAATCATGTTGT+TGG | 0.455247 | 2_3:+7741160 | Msa0275590:CDS |
| GGTTGGGGAGGATGTGCAGT+TGG | 0.462373 | 2_3:+7736467 | Msa0275590:CDS |
| ATAGAGGAACCTTTCCAGAT+TGG | 0.466519 | 2_3:-7741341 | None:intergenic |
| GGCTTCAGCCGTGTCACTGC+AGG | 0.467074 | 2_3:+7736446 | Msa0275590:CDS |
| AATTACTAAACTCACCTTGA+GGG | 0.470171 | 2_3:-7741452 | None:intergenic |
| CAAATTTCCTCCTCATTAGC+AGG | 0.476725 | 2_3:-7742309 | None:intergenic |
| TACTGCAGTGCCTGCTAATG+AGG | 0.480593 | 2_3:+7742299 | Msa0275590:CDS |
| AGCCGTGTCACTGCAGGTTG+GGG | 0.480629 | 2_3:+7736452 | Msa0275590:CDS |
| TTACTCATAATTGTGGAGAA+TGG | 0.485261 | 2_3:+7742586 | Msa0275590:three_prime_UTR |
| TGACCAACAACATGATTAGC+AGG | 0.488097 | 2_3:-7741163 | None:intergenic |
| AGCGACAAAGAGTGTGGAAG+TGG | 0.491542 | 2_3:-7741224 | None:intergenic |
| TTTGCTGCTGAAAAGGTTTG+TGG | 0.496279 | 2_3:+7736416 | Msa0275590:CDS |
| TGTTTAACACAGGATGGAAT+GGG | 0.496845 | 2_3:-7736250 | None:intergenic |
| TCTGTGGCTGCAAGAACTGC+TGG | 0.497107 | 2_3:-7742453 | None:intergenic |
| GTGTTTAACACAGGATGGAA+TGG | 0.498789 | 2_3:-7736251 | None:intergenic |
| CGACTATAAGACATGTATGA+AGG | 0.503333 | 2_3:+7742544 | Msa0275590:three_prime_UTR |
| AGAGTAGATATCTTTCCAAA+TGG | 0.504047 | 2_3:+7742473 | Msa0275590:exon |
| TTTAGAGAGAGAAAATATGT+TGG | 0.504683 | 2_3:+7736308 | Msa0275590:exon |
| GTCTCCTCCGGAGGAGCTGG+TGG | 0.505758 | 2_3:+7736353 | Msa0275590:CDS |
| GAAGGATCTCTAGACAATCT+AGG | 0.508330 | 2_3:+7741046 | Msa0275590:CDS |
| AAAATTTACCTTGGTTGCCA+AGG | 0.511220 | 2_3:-7736513 | None:intergenic |
| TAGCTCAGTGGTGTCTCCTC+CGG | 0.513586 | 2_3:+7736341 | Msa0275590:CDS |
| CCCTAGTGTTTAACACAGGA+TGG | 0.516967 | 2_3:-7736256 | None:intergenic |
| CAGGATGGAATGGGATGGGA+TGG | 0.517592 | 2_3:-7736241 | None:intergenic |
| AATAGGTTTACTCATAATTG+TGG | 0.518436 | 2_3:+7742579 | Msa0275590:three_prime_UTR |
| TCAGCCGTGTCACTGCAGGT+TGG | 0.521453 | 2_3:+7736450 | Msa0275590:CDS |
| TTCTACTCAACAGCAGTTGG+AGG | 0.526910 | 2_3:+7742243 | Msa0275590:CDS |
| TGTTTCTACTCAACAGCAGT+TGG | 0.527144 | 2_3:+7742240 | Msa0275590:CDS |
| GAAAAGGTTTGTGGAGAGGA+AGG | 0.528744 | 2_3:+7736425 | Msa0275590:CDS |
| TCACTTGCTTCTTTCCCTCA+AGG | 0.530143 | 2_3:+7741438 | Msa0275590:CDS |
| TATTGGGGAATAACTGCTGA+TGG | 0.537056 | 2_3:+7741363 | Msa0275590:CDS |
| CCAAATGGAGTATCATATGA+TGG | 0.537769 | 2_3:+7742488 | Msa0275590:three_prime_UTR |
| TTCGCCGACGTCTTCGGCGA+CGG | 0.538831 | 2_3:-7736393 | None:intergenic |
| GCAGTTATTCCCCAATATAG+AGG | 0.541559 | 2_3:-7741357 | None:intergenic |
| GTTGCCAAGGTGACTCCTCA+TGG | 0.551115 | 2_3:-7736500 | None:intergenic |
| ACTGTTGCCTCGTGAATAAG+TGG | 0.553744 | 2_3:-7742822 | None:intergenic |
| TGTTAGGTCATTCGCTGTGA+AGG | 0.555236 | 2_3:+7741003 | Msa0275590:intron |
| TTGATAGGACCAATCTGGAA+AGG | 0.557100 | 2_3:+7741332 | Msa0275590:intron |
| TGGATGCATTAATGGAGTAA+TGG | 0.560531 | 2_3:+7742508 | Msa0275590:three_prime_UTR |
| ATGATGAATTAACAGGTGGA+AGG | 0.564009 | 2_3:+7742429 | Msa0275590:intron |
| TGATGAATTAACAGGTGGAA+GGG | 0.565942 | 2_3:+7742430 | Msa0275590:intron |
| TCCATCCTGTGTTAAACACT+AGG | 0.566125 | 2_3:+7736255 | Msa0275590:five_prime_UTR |
| CGTGTCACTGCAGGTTGGGG+AGG | 0.569130 | 2_3:+7736455 | Msa0275590:CDS |
| AACACAGGATGGAATGGGAT+GGG | 0.573277 | 2_3:-7736245 | None:intergenic |
| ACAACATGATTAGCAGGGTA+AGG | 0.573620 | 2_3:-7741157 | None:intergenic |
| GATTTGCTTAAAGGTGCTTG+TGG | 0.579022 | 2_3:+7741411 | Msa0275590:CDS |
| CTCAGTGGTGTCTCCTCCGG+AGG | 0.585477 | 2_3:+7736344 | Msa0275590:CDS |
| CACACCATGAGGAGTCACCT+TGG | 0.585888 | 2_3:+7736496 | Msa0275590:CDS |
| TCTACTCAACAGCAGTTGGA+GGG | 0.599031 | 2_3:+7742244 | Msa0275590:CDS |
| AGGAGTCACCTTGGCAACCA+AGG | 0.601615 | 2_3:+7736505 | Msa0275590:CDS |
| CCATCCTGTGTTAAACACTA+GGG | 0.602166 | 2_3:+7736256 | Msa0275590:five_prime_UTR |
| CTCCCCAACCTGCAGTGACA+CGG | 0.604072 | 2_3:-7736454 | None:intergenic |
| TAACACAGGATGGAATGGGA+TGG | 0.604414 | 2_3:-7736246 | None:intergenic |
| CAAATCAGCATCATCAGCAA+AGG | 0.606251 | 2_3:-7741394 | None:intergenic |
| TAGAGAGAGAAAATATGTTG+GGG | 0.610876 | 2_3:+7736310 | Msa0275590:exon |
| GGAAAGGTTCCTCTATATTG+GGG | 0.613894 | 2_3:+7741348 | Msa0275590:CDS |
| GCAGCCACCAGCTCCTCCGG+AGG | 0.614698 | 2_3:-7736357 | None:intergenic |
| AGGATGGAATGGGATGGGAT+GGG | 0.619943 | 2_3:-7736240 | None:intergenic |
| TGCAGTGCCTGCTAATGAGG+AGG | 0.621425 | 2_3:+7742302 | Msa0275590:CDS |
| GACTATAAGACATGTATGAA+GGG | 0.625194 | 2_3:+7742545 | Msa0275590:three_prime_UTR |
| TACGGAAGCGACAAAGAGTG+TGG | 0.626189 | 2_3:-7741230 | None:intergenic |
| TTGTCCCTAGTGTTTAACAC+AGG | 0.634689 | 2_3:-7736260 | None:intergenic |
| TGCTGAAAAGGTTTGTGGAG+AGG | 0.654631 | 2_3:+7736421 | Msa0275590:CDS |
| GGGGATATTCAGTAGCTCAG+TGG | 0.666441 | 2_3:+7736329 | Msa0275590:CDS |
| GACCAACAACATGATTAGCA+GGG | 0.670833 | 2_3:-7741162 | None:intergenic |
| GCTAATGAGGAGGAAATTTG+GGG | 0.677443 | 2_3:+7742312 | Msa0275590:CDS |
| TAATGATCCACTTATTCACG+AGG | 0.678974 | 2_3:+7742815 | Msa0275590:three_prime_UTR |
| AACACCGTCGCCGAAGACGT+CGG | 0.682410 | 2_3:+7736389 | Msa0275590:CDS |
| TTGGAAAGATATCTACTCTG+TGG | 0.685063 | 2_3:-7742469 | None:intergenic |
| GTTGGCTTATACACACCATG+AGG | 0.770040 | 2_3:+7736485 | Msa0275590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTTTATTATGAAATTG+TGG | + | chr2_3:7738261-7738280 | Msa0275590:intron | 10.0% |
| !!! | ATTTTTCGTAAAAAAAAAAA+TGG | - | chr2_3:7738489-7738508 | None:intergenic | 10.0% |
| !! | GATATTTAATCATAATATAT+AGG | - | chr2_3:7738832-7738851 | None:intergenic | 10.0% |
| !!! | CTATTTAAAACAAAATTTAT+AGG | - | chr2_3:7738854-7738873 | None:intergenic | 10.0% |
| !! | AAAAATATAAGAAAAATAGT+AGG | - | chr2_3:7739111-7739130 | None:intergenic | 10.0% |
| !! | GGTAAAAAAATAAATTAAAA+GGG | - | chr2_3:7741288-7741307 | None:intergenic | 10.0% |
| !! | TGGTAAAAAAATAAATTAAA+AGG | - | chr2_3:7741289-7741308 | None:intergenic | 10.0% |
| !!! | AATAAAACTTGTTGAAATTT+GGG | - | chr2_3:7738138-7738157 | None:intergenic | 15.0% |
| !!! | TGTAATTTTTACCAAAATAA+AGG | - | chr2_3:7740427-7740446 | None:intergenic | 15.0% |
| !!! | TTTTAAAGACAAAATTTTAG+TGG | + | chr2_3:7740803-7740822 | Msa0275590:intron | 15.0% |
| !!! | TTTAGTGGTAAATTTTTTAA+AGG | + | chr2_3:7740818-7740837 | Msa0275590:intron | 15.0% |
| !!! | TTAGTGGTAAATTTTTTAAA+GGG | + | chr2_3:7740819-7740838 | Msa0275590:intron | 15.0% |
| !!! | TTGTTTGTATTATTTTTGAT+AGG | + | chr2_3:7741317-7741336 | Msa0275590:intron | 15.0% |
| !!! | TTTAAAAAGTTCAATTTTCT+AGG | - | chr2_3:7741521-7741540 | None:intergenic | 15.0% |
| !! | ATTTACTATTTATAAGATGT+TGG | - | chr2_3:7742079-7742098 | None:intergenic | 15.0% |
| !! | AATATGACATATTTATAAGT+AGG | + | chr2_3:7742096-7742115 | Msa0275590:intron | 15.0% |
| !! | ATATGACATATTTATAAGTA+GGG | + | chr2_3:7742097-7742116 | Msa0275590:intron | 15.0% |
| !! | TCTTATGTTTATTTATCTCT+TGG | + | chr2_3:7736761-7736780 | Msa0275590:intron | 20.0% |
| !! | AATAAAATATAAGAAGTGGT+TGG | - | chr2_3:7737043-7737062 | None:intergenic | 20.0% |
| !! | AATAAAATATAAGAAGTGGT+CGG | - | chr2_3:7737043-7737062 | None:intergenic | 20.0% |
| !! | GTAATAGAAATAGTGTTTAT+TGG | + | chr2_3:7737928-7737947 | Msa0275590:intron | 20.0% |
| !!! | ATAAAACTTGTTGAAATTTG+GGG | - | chr2_3:7738137-7738156 | None:intergenic | 20.0% |
| !!! | GAATAAAACTTGTTGAAATT+TGG | - | chr2_3:7738139-7738158 | None:intergenic | 20.0% |
| !! | TTCAACCATAATATATTTCA+GGG | + | chr2_3:7738300-7738319 | Msa0275590:intron | 20.0% |
| !! | TTAACTAGATTAAACTATGT+TGG | - | chr2_3:7738431-7738450 | None:intergenic | 20.0% |
| !! | AAGAATTTATCAAAAAAAGC+TGG | - | chr2_3:7738726-7738745 | None:intergenic | 20.0% |
| !! | TCAATTTAATTAACCAAACA+AGG | + | chr2_3:7738897-7738916 | Msa0275590:intron | 20.0% |
| !! | ATCATTATCAAAACCTAATT+CGG | - | chr2_3:7739076-7739095 | None:intergenic | 20.0% |
| !! | ATTGATAAAAATATCCTGTA+AGG | + | chr2_3:7739225-7739244 | Msa0275590:intron | 20.0% |
| !! | TAAACTAAACAAGAAAAGAT+AGG | - | chr2_3:7739348-7739367 | None:intergenic | 20.0% |
| !! | AAATTAGAGTTAAAAAGCTA+TGG | + | chr2_3:7739369-7739388 | Msa0275590:intron | 20.0% |
| !! | TAAACATTTCCCTATAATAA+AGG | - | chr2_3:7739421-7739440 | None:intergenic | 20.0% |
| !! | AGTGATGATTTAATTGTTTA+AGG | - | chr2_3:7739787-7739806 | None:intergenic | 20.0% |
| !! | AAATTTCCTTATCAAATGTT+AGG | + | chr2_3:7739867-7739886 | Msa0275590:intron | 20.0% |
| !!! | CTTTGGAATATTTTTTCTTA+TGG | + | chr2_3:7740054-7740073 | Msa0275590:intron | 20.0% |
| !!! | TCTTTGTCTTATTGTTTATA+TGG | - | chr2_3:7740151-7740170 | None:intergenic | 20.0% |
| !!! | AATTTTTACCAAAATAAAGG+TGG | - | chr2_3:7740424-7740443 | None:intergenic | 20.0% |
| !! | TATATTACACACACTTAAAT+TGG | + | chr2_3:7740502-7740521 | Msa0275590:intron | 20.0% |
| !!! | ATATTTGAGTTGAAAATGTT+AGG | + | chr2_3:7740987-7741006 | Msa0275590:intron | 20.0% |
| !! | TTAAAAGGGACTTATAATAA+GGG | - | chr2_3:7741274-7741293 | None:intergenic | 20.0% |
| !! | ATTAAAAGGGACTTATAATA+AGG | - | chr2_3:7741275-7741294 | None:intergenic | 20.0% |
| !! | AATTTGGTTAAAATTGAGTT+TGG | - | chr2_3:7741714-7741733 | None:intergenic | 20.0% |
| !! | GACTTCAAATGAATTTAATT+TGG | - | chr2_3:7741730-7741749 | None:intergenic | 20.0% |
| !! | TATGACATATTTATAAGTAG+GGG | + | chr2_3:7742098-7742117 | Msa0275590:intron | 20.0% |
| !! | CAATAATGAGAGAATAAATT+AGG | - | chr2_3:7742192-7742211 | None:intergenic | 20.0% |
| !! | GATATTTATGATGAATTAAC+AGG | + | chr2_3:7742422-7742441 | Msa0275590:intron | 20.0% |
| !! | ATAATAAAAATATATGCGTC+TGG | + | chr2_3:7742710-7742729 | Msa0275590:three_prime_UTR | 20.0% |
| !! | CTAAATTATTAGTTGAAAGA+TGG | - | chr2_3:7742795-7742814 | None:intergenic | 20.0% |
| ! | TTTAGAGAGAGAAAATATGT+TGG | + | chr2_3:7736308-7736327 | Msa0275590:exon | 25.0% |
| ! | TTAGAGAGAGAAAATATGTT+GGG | + | chr2_3:7736309-7736328 | Msa0275590:exon | 25.0% |
| ! | TCATGAGTAAATTTCTTTCT+TGG | - | chr2_3:7736636-7736655 | None:intergenic | 25.0% |
| ! | GAGATAAATAAACATAAGAG+TGG | - | chr2_3:7736760-7736779 | None:intergenic | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | - | chr2_3:7736912-7736931 | None:intergenic | 25.0% |
| !! | AATTTGCTTATAATAGTGAC+CGG | + | chr2_3:7736947-7736966 | Msa0275590:intron | 25.0% |
| ! | CTCGAATAAAATATAAGAAG+TGG | - | chr2_3:7737047-7737066 | None:intergenic | 25.0% |
| ! | CTCGAATAAAATATAAGAAG+TGG | - | chr2_3:7737047-7737066 | None:intergenic | 25.0% |
| ! | TCGAGAGCTATTATAATTAT+AGG | + | chr2_3:7737062-7737081 | Msa0275590:intron | 25.0% |
| ! | TTTGCTCTATGTAATGTATA+CGG | - | chr2_3:7737175-7737194 | None:intergenic | 25.0% |
| ! | ACGAAAACTAGAATAAAACT+TGG | - | chr2_3:7737511-7737530 | None:intergenic | 25.0% |
| ! | TGTTGCAATAGTAACAATTT+GGG | + | chr2_3:7737648-7737667 | Msa0275590:intron | 25.0% |
| !!! | TCATTTTTGATGGTTCATTA+AGG | + | chr2_3:7737772-7737791 | Msa0275590:intron | 25.0% |
| ! | TGGTTCATTAAGGAAAAATA+AGG | + | chr2_3:7737782-7737801 | Msa0275590:intron | 25.0% |
| ! | CTTGATCAGAATTTATAAAG+TGG | + | chr2_3:7738059-7738078 | Msa0275590:intron | 25.0% |
| ! | GTTCAACCATAATATATTTC+AGG | + | chr2_3:7738299-7738318 | Msa0275590:intron | 25.0% |
| ! | GAAAACCCTGAAATATATTA+TGG | - | chr2_3:7738308-7738327 | None:intergenic | 25.0% |
| !!! | TGTTTATTTGCTTTTTGCTA+AGG | + | chr2_3:7738331-7738350 | Msa0275590:intron | 25.0% |
| !!! | CAAACTTTTTCAAAATGCAA+TGG | + | chr2_3:7738509-7738528 | Msa0275590:intron | 25.0% |
| ! | ATTAAGCAACATTGAGTTTA+TGG | + | chr2_3:7738546-7738565 | Msa0275590:intron | 25.0% |
| ! | TTAAGCAACATTGAGTTTAT+GGG | + | chr2_3:7738547-7738566 | Msa0275590:intron | 25.0% |
| ! | TTCAATAAACTTTGATCCTT+TGG | - | chr2_3:7738665-7738684 | None:intergenic | 25.0% |
| ! | TTTAATTAACCAAACAAGGT+AGG | + | chr2_3:7738901-7738920 | Msa0275590:intron | 25.0% |
| ! | GTTACAAAGAATGTGAAAAT+AGG | + | chr2_3:7739045-7739064 | Msa0275590:intron | 25.0% |
| ! | CAGATTGAATTATTGATCTA+TGG | + | chr2_3:7739299-7739318 | Msa0275590:intron | 25.0% |
| ! | AATCTACAAATGAGTTTAAG+TGG | + | chr2_3:7739450-7739469 | Msa0275590:intron | 25.0% |
| ! | CTATCAATACATCTTAAGAT+TGG | - | chr2_3:7739515-7739534 | None:intergenic | 25.0% |
| !! | CAATCTTAAGATGTATTGAT+AGG | + | chr2_3:7739513-7739532 | Msa0275590:intron | 25.0% |
| ! | CAATTGTAACAAAATGTGAA+AGG | + | chr2_3:7739606-7739625 | Msa0275590:intron | 25.0% |
| !!! | ATCAATAGTCATTTTTCAAC+TGG | + | chr2_3:7739654-7739673 | Msa0275590:intron | 25.0% |
| !! | TTTTGTCCTAACATTTGATA+AGG | - | chr2_3:7739876-7739895 | None:intergenic | 25.0% |
| ! | GAATAAGGATAAGATTAATG+TGG | + | chr2_3:7740090-7740109 | Msa0275590:intron | 25.0% |
| ! | TTGGTTAAACACTTAACAAT+AGG | + | chr2_3:7740624-7740643 | Msa0275590:intron | 25.0% |
| ! | AAACTCAATTTCTATCTACT+CGG | + | chr2_3:7740674-7740693 | Msa0275590:intron | 25.0% |
| ! | GTTACCTATTTCATATTCAT+GGG | + | chr2_3:7740696-7740715 | Msa0275590:intron | 25.0% |
| ! | ATTAGAAATGAAACAGTACT+TGG | + | chr2_3:7740728-7740747 | Msa0275590:intron | 25.0% |
| ! | TACATGTCTTATACTAAACA+TGG | - | chr2_3:7740775-7740794 | None:intergenic | 25.0% |
| ! | GTTAACACAAAATTAAACTC+TGG | + | chr2_3:7740853-7740872 | Msa0275590:intron | 25.0% |
| ! | AATCATAAGAACTACTTCAT+TGG | - | chr2_3:7741107-7741126 | None:intergenic | 25.0% |
| ! | ACGGAGTTATAAATAACTTA+CGG | - | chr2_3:7741251-7741270 | None:intergenic | 25.0% |
| ! | TAATACAAACAAAACGCTAT+TGG | - | chr2_3:7741309-7741328 | None:intergenic | 25.0% |
| !! | AATCTCTTAAGACTCTAAAA+AGG | - | chr2_3:7741679-7741698 | None:intergenic | 25.0% |
| !! | AAATTCATTTGAAGTCAAGT+CGG | + | chr2_3:7741734-7741753 | Msa0275590:intron | 25.0% |
| ! | AATTCCAATTTCCAATGTTT+AGG | + | chr2_3:7741806-7741825 | Msa0275590:intron | 25.0% |
| !!! | TTTATAAGATGTTGGTTTAG+TGG | - | chr2_3:7742071-7742090 | None:intergenic | 25.0% |
| ! | TTGTAAGAGACAATAGATAA+TGG | - | chr2_3:7742400-7742419 | None:intergenic | 25.0% |
| ! | ATTTATGATGAATTAACAGG+TGG | + | chr2_3:7742425-7742444 | Msa0275590:intron | 25.0% |
| ! | GAGTAAACCTATTTACATTA+TGG | - | chr2_3:7742572-7742591 | None:intergenic | 25.0% |
| ! | AATAGGTTTACTCATAATTG+TGG | + | chr2_3:7742579-7742598 | Msa0275590:three_prime_UTR | 25.0% |
| !!! | AGTTTTGTGTATTACTACAT+AGG | + | chr2_3:7742644-7742663 | Msa0275590:three_prime_UTR | 25.0% |
| TAGAGAGAGAAAATATGTTG+GGG | + | chr2_3:7736310-7736329 | Msa0275590:exon | 30.0% | |
| ! | GCAGTGTTTAAAATTTACCT+TGG | - | chr2_3:7736525-7736544 | None:intergenic | 30.0% |
| ATTACATAGAGCAAACATGT+AGG | + | chr2_3:7737180-7737199 | Msa0275590:intron | 30.0% | |
| AAATATGGAACTAGCTCAAT+TGG | + | chr2_3:7737223-7737242 | Msa0275590:intron | 30.0% | |
| !! | TTCAATTGAGTTGAACTCAT+GGG | + | chr2_3:7737291-7737310 | Msa0275590:intron | 30.0% |
| ATATATTCTCCGATGAAGTT+AGG | - | chr2_3:7737355-7737374 | None:intergenic | 30.0% | |
| ! | ATTTTGTTCTTGTCTGTTGA+AGG | + | chr2_3:7737551-7737570 | Msa0275590:intron | 30.0% |
| GTGTTGCAATAGTAACAATT+TGG | + | chr2_3:7737647-7737666 | Msa0275590:intron | 30.0% | |
| !!! | GATGTCATTGTCATTTTTGA+TGG | + | chr2_3:7737762-7737781 | Msa0275590:intron | 30.0% |
| CTGTCTAGTCAAAATGATTA+AGG | + | chr2_3:7737860-7737879 | Msa0275590:intron | 30.0% | |
| GACAAAGACAAGATAACATA+GGG | - | chr2_3:7737997-7738016 | None:intergenic | 30.0% | |
| AGACAAAGACAAGATAACAT+AGG | - | chr2_3:7737998-7738017 | None:intergenic | 30.0% | |
| TTATCTTGTCTTTGTCTTTG+AGG | + | chr2_3:7738001-7738020 | Msa0275590:intron | 30.0% | |
| TATCTTGTCTTTGTCTTTGA+GGG | + | chr2_3:7738002-7738021 | Msa0275590:intron | 30.0% | |
| TAGTCTCATATCGAATAGAT+AGG | + | chr2_3:7738033-7738052 | Msa0275590:intron | 30.0% | |
| ATAATTCATCCTTGCAAAAC+CGG | - | chr2_3:7738113-7738132 | None:intergenic | 30.0% | |
| !!! | TCACCATAAACTCTAGTTTT+TGG | + | chr2_3:7738157-7738176 | Msa0275590:intron | 30.0% |
| CATCCAAAAACTAGAGTTTA+TGG | - | chr2_3:7738163-7738182 | None:intergenic | 30.0% | |
| AGATTAAACTATGTTGGATG+AGG | - | chr2_3:7738425-7738444 | None:intergenic | 30.0% | |
| ! | TTTTCAAAATGCAATGGATG+TGG | + | chr2_3:7738515-7738534 | Msa0275590:intron | 30.0% |
| TAAGCAACATTGAGTTTATG+GGG | + | chr2_3:7738548-7738567 | Msa0275590:intron | 30.0% | |
| !! | CATAGAGCACATTTTTAAAG+AGG | + | chr2_3:7738590-7738609 | Msa0275590:intron | 30.0% |
| AGTAATTATTGTTGCTGATG+TGG | + | chr2_3:7738795-7738814 | Msa0275590:intron | 30.0% | |
| GTAATTATTGTTGCTGATGT+GGG | + | chr2_3:7738796-7738815 | Msa0275590:intron | 30.0% | |
| CAAAGAATGTGAAAATAGGT+TGG | + | chr2_3:7739049-7739068 | Msa0275590:intron | 30.0% | |
| CCTATAATAAAGGACTAAAG+GGG | - | chr2_3:7739411-7739430 | None:intergenic | 30.0% | |
| CCCTATAATAAAGGACTAAA+GGG | - | chr2_3:7739412-7739431 | None:intergenic | 30.0% | |
| CCCTTTAGTCCTTTATTATA+GGG | + | chr2_3:7739409-7739428 | Msa0275590:intron | 30.0% | |
| TCCCTATAATAAAGGACTAA+AGG | - | chr2_3:7739413-7739432 | None:intergenic | 30.0% | |
| !! | TCAATAAGAAGTTAGCTTTC+AGG | - | chr2_3:7739730-7739749 | None:intergenic | 30.0% |
| ATTGCATTTCATCCAATCTT+AGG | + | chr2_3:7739841-7739860 | Msa0275590:intron | 30.0% | |
| ! | AGGAAATTTTGTCCTAAGAT+TGG | - | chr2_3:7739856-7739875 | None:intergenic | 30.0% |
| ATGTTAGGACAAAATTATCC+TGG | + | chr2_3:7739882-7739901 | Msa0275590:intron | 30.0% | |
| CGAAATTTCACATCTACTAT+TGG | - | chr2_3:7739923-7739942 | None:intergenic | 30.0% | |
| ATAGTAGATGTGAAATTTCG+TGG | + | chr2_3:7739923-7739942 | Msa0275590:intron | 30.0% | |
| ATTGCAATTATTAGCCACTT+TGG | + | chr2_3:7739967-7739986 | Msa0275590:intron | 30.0% | |
| ! | TTGCAATTATTAGCCACTTT+GGG | + | chr2_3:7739968-7739987 | Msa0275590:intron | 30.0% |
| !! | AGAAAGTCAACATTTTGGAA+TGG | - | chr2_3:7740004-7740023 | None:intergenic | 30.0% |
| ! | AAGTGAGAAAGTCAACATTT+TGG | - | chr2_3:7740009-7740028 | None:intergenic | 30.0% |
| ! | TTACCAACTTCTGTTTTCTT+TGG | + | chr2_3:7740037-7740056 | Msa0275590:intron | 30.0% |
| ATTCCAAAGAAAACAGAAGT+TGG | - | chr2_3:7740043-7740062 | None:intergenic | 30.0% | |
| !!! | TTTTTTCTTATGGCCTAAGA+AGG | + | chr2_3:7740064-7740083 | Msa0275590:intron | 30.0% |
| TTAGAGCAGATTTAGATTCA+CGG | + | chr2_3:7740275-7740294 | Msa0275590:intron | 30.0% | |
| ! | GCTTCAAAGTATAGTTTTTG+CGG | - | chr2_3:7740305-7740324 | None:intergenic | 30.0% |
| TTGAAGCTTCTATAAAACCA+AGG | + | chr2_3:7740318-7740337 | Msa0275590:intron | 30.0% | |
| TTACACACACTTAAATTGGA+AGG | + | chr2_3:7740506-7740525 | Msa0275590:intron | 30.0% | |
| ! | TTTTAATGAGCACACGAATT+TGG | + | chr2_3:7740605-7740624 | Msa0275590:intron | 30.0% |
| GGTTACCTATTTCATATTCA+TGG | + | chr2_3:7740695-7740714 | Msa0275590:intron | 30.0% | |
| ATAACACGACTACATCTTTA+GGG | + | chr2_3:7740911-7740930 | Msa0275590:intron | 30.0% | |
| !! | TATTTTTGATAGGACCAATC+TGG | + | chr2_3:7741327-7741346 | Msa0275590:intron | 30.0% |
| AATTACTAAACTCACCTTGA+GGG | - | chr2_3:7741455-7741474 | None:intergenic | 30.0% | |
| AAATTACTAAACTCACCTTG+AGG | - | chr2_3:7741456-7741475 | None:intergenic | 30.0% | |
| TAGACTTTGCTTTCAAAGTT+TGG | + | chr2_3:7741572-7741591 | Msa0275590:intron | 30.0% | |
| TATCAAACTCTCACTTGATT+AGG | + | chr2_3:7741759-7741778 | Msa0275590:intron | 30.0% | |
| ACATATAGTTGCCTAAACAT+TGG | - | chr2_3:7741820-7741839 | None:intergenic | 30.0% | |
| GAATCAGAATCTAATGCATA+TGG | - | chr2_3:7741852-7741871 | None:intergenic | 30.0% | |
| TAGTGAATGTTTAATCTGAG+TGG | - | chr2_3:7741938-7741957 | None:intergenic | 30.0% | |
| !! | GTTTAGCCTTGTAATTCTAA+GGG | - | chr2_3:7742043-7742062 | None:intergenic | 30.0% |
| !! | AGTTTAGCCTTGTAATTCTA+AGG | - | chr2_3:7742044-7742063 | None:intergenic | 30.0% |
| GAGAATAAATTAGGAGTTGA+GGG | - | chr2_3:7742183-7742202 | None:intergenic | 30.0% | |
| AGAGAATAAATTAGGAGTTG+AGG | - | chr2_3:7742184-7742203 | None:intergenic | 30.0% | |
| GTACAATTTACATAGCAACA+AGG | - | chr2_3:7742216-7742235 | None:intergenic | 30.0% | |
| TGTTGCTATGTAAATTGTAC+AGG | + | chr2_3:7742216-7742235 | Msa0275590:intron | 30.0% | |
| ACTGCAGTAATCTTATTCTT+TGG | - | chr2_3:7742288-7742307 | None:intergenic | 30.0% | |
| !! | ACAATTACCTCTAAAACTCT+TGG | + | chr2_3:7742355-7742374 | Msa0275590:intron | 30.0% |
| AGAGTAGATATCTTTCCAAA+TGG | + | chr2_3:7742473-7742492 | Msa0275590:exon | 30.0% | |
| !! | TCATATGATGGATGCATTAA+TGG | + | chr2_3:7742500-7742519 | Msa0275590:three_prime_UTR | 30.0% |
| GACTATAAGACATGTATGAA+GGG | + | chr2_3:7742545-7742564 | Msa0275590:three_prime_UTR | 30.0% | |
| TTACTCATAATTGTGGAGAA+TGG | + | chr2_3:7742586-7742605 | Msa0275590:three_prime_UTR | 30.0% | |
| TACTCATAATTGTGGAGAAT+GGG | + | chr2_3:7742587-7742606 | Msa0275590:three_prime_UTR | 30.0% | |
| TATTACATTCGAAATGCAAC+TGG | - | chr2_3:7742693-7742712 | None:intergenic | 30.0% | |
| TGTTTAACACAGGATGGAAT+GGG | - | chr2_3:7736253-7736272 | None:intergenic | 35.0% | |
| AAAATTTACCTTGGTTGCCA+AGG | - | chr2_3:7736516-7736535 | None:intergenic | 35.0% | |
| TAGCTAGCTATGAACTTTGT+TGG | + | chr2_3:7736673-7736692 | Msa0275590:intron | 35.0% | |
| AAATAGTTTAGTACTCCCTC+CGG | + | chr2_3:7736816-7736835 | Msa0275590:intron | 35.0% | |
| !! | AATTTGCTGATAACAGTGAC+CGG | - | chr2_3:7736838-7736857 | None:intergenic | 35.0% |
| CTCTATGTAATGTATACGGA+CGG | - | chr2_3:7737171-7737190 | None:intergenic | 35.0% | |
| TAAGAAGGAACTAGCTCAAT+TGG | + | chr2_3:7737262-7737281 | Msa0275590:intron | 35.0% | |
| !! | GTTCAATTGAGTTGAACTCA+TGG | + | chr2_3:7737290-7737309 | Msa0275590:intron | 35.0% |
| CACTTATTCATCGTATGAGA+TGG | + | chr2_3:7737417-7737436 | Msa0275590:intron | 35.0% | |
| TGCAATAGTAACAATTTGGG+TGG | + | chr2_3:7737651-7737670 | Msa0275590:intron | 35.0% | |
| AATAGTAACAATTTGGGTGG+TGG | + | chr2_3:7737654-7737673 | Msa0275590:intron | 35.0% | |
| ATAGTAACAATTTGGGTGGT+GGG | + | chr2_3:7737655-7737674 | Msa0275590:intron | 35.0% | |
| GATTATCAAATCATCGCCAT+TGG | - | chr2_3:7737694-7737713 | None:intergenic | 35.0% | |
| ! | GCGATGATTTGATAATCAGT+CGG | + | chr2_3:7737697-7737716 | Msa0275590:intron | 35.0% |
| !!! | AAGGTCTTTGTTTTGTTGAG+AGG | + | chr2_3:7737801-7737820 | Msa0275590:intron | 35.0% |
| ATCTCACCTTAATTGCGATT+TGG | + | chr2_3:7737971-7737990 | Msa0275590:intron | 35.0% | |
| ATCTTGTCTTTGTCTTTGAG+GGG | + | chr2_3:7738003-7738022 | Msa0275590:intron | 35.0% | |
| ! | TTTTTGGATGCATGCAATCT+TGG | + | chr2_3:7738173-7738192 | Msa0275590:intron | 35.0% |
| ATAGTAGTCTATGTTCGAGA+AGG | + | chr2_3:7738196-7738215 | Msa0275590:intron | 35.0% | |
| ! | GCGTTGAAATTTTCTCTTCT+TGG | + | chr2_3:7738367-7738386 | Msa0275590:intron | 35.0% |
| AACAAAAAACGACTCTTGGT+TGG | - | chr2_3:7738396-7738415 | None:intergenic | 35.0% | |
| CTTCAACAAAAAACGACTCT+TGG | - | chr2_3:7738400-7738419 | None:intergenic | 35.0% | |
| CTATCTTTACCTACCTTGTT+TGG | - | chr2_3:7738913-7738932 | None:intergenic | 35.0% | |
| CAAACAAGGTAGGTAAAGAT+AGG | + | chr2_3:7738911-7738930 | Msa0275590:intron | 35.0% | |
| ! | AAAATAGGTTGGACCGAATT+AGG | + | chr2_3:7739060-7739079 | Msa0275590:intron | 35.0% |
| AAGAAAAGATAGGCTCGTAT+TGG | - | chr2_3:7739338-7739357 | None:intergenic | 35.0% | |
| CCCCTTTAGTCCTTTATTAT+AGG | + | chr2_3:7739408-7739427 | Msa0275590:intron | 35.0% | |
| !! | TTCCGTCTTTGAGATTATCA+AGG | + | chr2_3:7739694-7739713 | Msa0275590:intron | 35.0% |
| !! | TCCGTCTTTGAGATTATCAA+GGG | + | chr2_3:7739695-7739714 | Msa0275590:intron | 35.0% |
| ! | TCCCTTGATAATCTCAAAGA+CGG | - | chr2_3:7739699-7739718 | None:intergenic | 35.0% |
| ATCCTTATTCCATCCTTCTT+AGG | - | chr2_3:7740080-7740099 | None:intergenic | 35.0% | |
| GGATAAGATTAATGTGGAGT+AGG | + | chr2_3:7740096-7740115 | Msa0275590:intron | 35.0% | |
| ATTAATGTGGAGTAGGTTGT+TGG | + | chr2_3:7740103-7740122 | Msa0275590:intron | 35.0% | |
| TTAATGTGGAGTAGGTTGTT+GGG | + | chr2_3:7740104-7740123 | Msa0275590:intron | 35.0% | |
| ! | TGGTTTTCTATTTCATTGCC+TGG | - | chr2_3:7740131-7740150 | None:intergenic | 35.0% |
| TTGTGTCACAGTGCATTTAA+AGG | + | chr2_3:7740171-7740190 | Msa0275590:intron | 35.0% | |
| ATAAAATCGTAGTGATGCCT+TGG | - | chr2_3:7740338-7740357 | None:intergenic | 35.0% | |
| AAAATAAAGGTGGATCATCG+CGG | - | chr2_3:7740414-7740433 | None:intergenic | 35.0% | |
| GTTACCTAATCTACCTAAGT+TGG | + | chr2_3:7740528-7740547 | Msa0275590:intron | 35.0% | |
| CTTTCCAACTTAGGTAGATT+AGG | - | chr2_3:7740535-7740554 | None:intergenic | 35.0% | |
| ! | CTAATCTACCTAAGTTGGAA+AGG | + | chr2_3:7740533-7740552 | Msa0275590:intron | 35.0% |
| CACACCCATGAATATGAAAT+AGG | - | chr2_3:7740703-7740722 | None:intergenic | 35.0% | |
| CATAACACGACTACATCTTT+AGG | + | chr2_3:7740910-7740929 | Msa0275590:intron | 35.0% | |
| GAGATATTCTGCTTGTTTGA+AGG | + | chr2_3:7741028-7741047 | Msa0275590:CDS | 35.0% | |
| AAGGGACTTATAATAAGGGA+CGG | - | chr2_3:7741270-7741289 | None:intergenic | 35.0% | |
| TGGAAAGGTTCCTCTATATT+GGG | + | chr2_3:7741347-7741366 | Msa0275590:CDS | 35.0% | |
| !! | GATGATGCTGATTTGCTTAA+AGG | + | chr2_3:7741402-7741421 | Msa0275590:CDS | 35.0% |
| GTTGCCTAAACATTGGAAAT+TGG | - | chr2_3:7741813-7741832 | None:intergenic | 35.0% | |
| ! | TCTTGACCATTAATTTGACG+TGG | + | chr2_3:7741910-7741929 | Msa0275590:intron | 35.0% |
| ! | CTTGACCATTAATTTGACGT+GGG | + | chr2_3:7741911-7741930 | Msa0275590:intron | 35.0% |
| ! | TATTAGAACCGATTTCTTGC+CGG | + | chr2_3:7741976-7741995 | Msa0275590:intron | 35.0% |
| TGTAAACTAGTCATTAGTCC+CGG | - | chr2_3:7741998-7742017 | None:intergenic | 35.0% | |
| !! | TAATGACTAGTTTACAACCG+AGG | + | chr2_3:7742002-7742021 | Msa0275590:intron | 35.0% |
| TGCTAATGAGGAGGAAATTT+GGG | + | chr2_3:7742311-7742330 | Msa0275590:CDS | 35.0% | |
| !! | AAGAGAACCAAGAGTTTTAG+AGG | - | chr2_3:7742365-7742384 | None:intergenic | 35.0% |
| ATGATGAATTAACAGGTGGA+AGG | + | chr2_3:7742429-7742448 | Msa0275590:intron | 35.0% | |
| TGATGAATTAACAGGTGGAA+GGG | + | chr2_3:7742430-7742449 | Msa0275590:intron | 35.0% | |
| TTGGAAAGATATCTACTCTG+TGG | - | chr2_3:7742472-7742491 | None:intergenic | 35.0% | |
| CCATCATATGATACTCCATT+TGG | - | chr2_3:7742491-7742510 | None:intergenic | 35.0% | |
| ! | CCAAATGGAGTATCATATGA+TGG | + | chr2_3:7742488-7742507 | Msa0275590:three_prime_UTR | 35.0% |
| TGGATGCATTAATGGAGTAA+TGG | + | chr2_3:7742508-7742527 | Msa0275590:three_prime_UTR | 35.0% | |
| GGATGCATTAATGGAGTAAT+GGG | + | chr2_3:7742509-7742528 | Msa0275590:three_prime_UTR | 35.0% | |
| CGACTATAAGACATGTATGA+AGG | + | chr2_3:7742544-7742563 | Msa0275590:three_prime_UTR | 35.0% | |
| GAAGGGACCATAATGTAAAT+AGG | + | chr2_3:7742562-7742581 | Msa0275590:three_prime_UTR | 35.0% | |
| TAATGATCCACTTATTCACG+AGG | + | chr2_3:7742815-7742834 | Msa0275590:three_prime_UTR | 35.0% | |
| GTGTTTAACACAGGATGGAA+TGG | - | chr2_3:7736254-7736273 | None:intergenic | 40.0% | |
| TCCATCCTGTGTTAAACACT+AGG | + | chr2_3:7736255-7736274 | Msa0275590:five_prime_UTR | 40.0% | |
| CCATCCTGTGTTAAACACTA+GGG | + | chr2_3:7736256-7736275 | Msa0275590:five_prime_UTR | 40.0% | |
| TTGTCCCTAGTGTTTAACAC+AGG | - | chr2_3:7736263-7736282 | None:intergenic | 40.0% | |
| TTTGCTGCTGAAAAGGTTTG+TGG | + | chr2_3:7736416-7736435 | Msa0275590:CDS | 40.0% | |
| ! | ATTGATGATCGCTGATCCAT+TGG | + | chr2_3:7736712-7736731 | Msa0275590:intron | 40.0% |
| TCCATTGGATCACTAACTAG+TGG | + | chr2_3:7736727-7736746 | Msa0275590:intron | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr2_3:7736950-7736969 | Msa0275590:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | chr2_3:7736951-7736970 | Msa0275590:intron | 40.0% | |
| ! | GACGTATTTTTCACTCCACT+CGG | - | chr2_3:7737592-7737611 | None:intergenic | 40.0% |
| TAGTAACAATTTGGGTGGTG+GGG | + | chr2_3:7737656-7737675 | Msa0275590:intron | 40.0% | |
| TGATAATCAGTCGGTGAAAG+AGG | + | chr2_3:7737706-7737725 | Msa0275590:intron | 40.0% | |
| AGAGGAGATTAGGATCAAGA+TGG | + | chr2_3:7737724-7737743 | Msa0275590:intron | 40.0% | |
| GAGGAGATTAGGATCAAGAT+GGG | + | chr2_3:7737725-7737744 | Msa0275590:intron | 40.0% | |
| AGGAGATTAGGATCAAGATG+GGG | + | chr2_3:7737726-7737745 | Msa0275590:intron | 40.0% | |
| ATAGGGCCAAATCGCAATTA+AGG | - | chr2_3:7737980-7737999 | None:intergenic | 40.0% | |
| ! | TCTTGTCTTTGTCTTTGAGG+GGG | + | chr2_3:7738004-7738023 | Msa0275590:intron | 40.0% |
| TGAGTTTATGGGGAAGAACA+AGG | + | chr2_3:7738558-7738577 | Msa0275590:intron | 40.0% | |
| ! | AGGAACGAAGAGCTTTAATC+AGG | + | chr2_3:7738610-7738629 | Msa0275590:intron | 40.0% |
| ! | GGAACGAAGAGCTTTAATCA+GGG | + | chr2_3:7738611-7738630 | Msa0275590:intron | 40.0% |
| ! | GAACGAAGAGCTTTAATCAG+GGG | + | chr2_3:7738612-7738631 | Msa0275590:intron | 40.0% |
| !! | TTGATCCTTTGGAACGACAA+TGG | - | chr2_3:7738654-7738673 | None:intergenic | 40.0% |
| GGTAGGTAAAGATAGGTGTT+AGG | + | chr2_3:7738918-7738937 | Msa0275590:intron | 40.0% | |
| GTTTCAACCTTGTCTTACGT+CGG | + | chr2_3:7738973-7738992 | Msa0275590:intron | 40.0% | |
| TATGAAACCGACGTAAGACA+AGG | - | chr2_3:7738983-7739002 | None:intergenic | 40.0% | |
| ACAAATTGTCGTGACGCAAA+GGG | - | chr2_3:7739273-7739292 | None:intergenic | 40.0% | |
| AATTTCGTGGTCACTTCAAC+TGG | + | chr2_3:7739936-7739955 | Msa0275590:intron | 40.0% | |
| ATTTCGTGGTCACTTCAACT+GGG | + | chr2_3:7739937-7739956 | Msa0275590:intron | 40.0% | |
| TTCTTATGGCCTAAGAAGGA+TGG | + | chr2_3:7740068-7740087 | Msa0275590:intron | 40.0% | |
| AAATAAAGGTGGATCATCGC+GGG | - | chr2_3:7740413-7740432 | None:intergenic | 40.0% | |
| !! | GCGATGATCCACCTTTATTT+TGG | + | chr2_3:7740413-7740432 | Msa0275590:intron | 40.0% |
| !! | TCTACTTGGGTTAGTGAAGA+GGG | - | chr2_3:7740464-7740483 | None:intergenic | 40.0% |
| TTCACTAACCCAAGTAGAGT+TGG | + | chr2_3:7740466-7740485 | Msa0275590:intron | 40.0% | |
| TAGTCTGACCAACTCTACTT+GGG | - | chr2_3:7740477-7740496 | None:intergenic | 40.0% | |
| ATAGTCTGACCAACTCTACT+TGG | - | chr2_3:7740478-7740497 | None:intergenic | 40.0% | |
| GACATCTACCTTTCCAACTT+AGG | - | chr2_3:7740544-7740563 | None:intergenic | 40.0% | |
| GAAGGATCTCTAGACAATCT+AGG | + | chr2_3:7741046-7741065 | Msa0275590:CDS | 40.0% | |
| ACAACATGATTAGCAGGGTA+AGG | - | chr2_3:7741160-7741179 | None:intergenic | 40.0% | |
| TACCCTGCTAATCATGTTGT+TGG | + | chr2_3:7741160-7741179 | Msa0275590:CDS | 40.0% | |
| GACCAACAACATGATTAGCA+GGG | - | chr2_3:7741165-7741184 | None:intergenic | 40.0% | |
| TGACCAACAACATGATTAGC+AGG | - | chr2_3:7741166-7741185 | None:intergenic | 40.0% | |
| CATGTTGTTGGTCATCTTAG+TGG | + | chr2_3:7741172-7741191 | Msa0275590:CDS | 40.0% | |
| TTGATAGGACCAATCTGGAA+AGG | + | chr2_3:7741332-7741351 | Msa0275590:intron | 40.0% | |
| ATAGAGGAACCTTTCCAGAT+TGG | - | chr2_3:7741344-7741363 | None:intergenic | 40.0% | |
| CTGGAAAGGTTCCTCTATAT+TGG | + | chr2_3:7741346-7741365 | Msa0275590:CDS | 40.0% | |
| GGAAAGGTTCCTCTATATTG+GGG | + | chr2_3:7741348-7741367 | Msa0275590:CDS | 40.0% | |
| GCAGTTATTCCCCAATATAG+AGG | - | chr2_3:7741360-7741379 | None:intergenic | 40.0% | |
| TATTGGGGAATAACTGCTGA+TGG | + | chr2_3:7741363-7741382 | Msa0275590:CDS | 40.0% | |
| CAAATCAGCATCATCAGCAA+AGG | - | chr2_3:7741397-7741416 | None:intergenic | 40.0% | |
| !! | GATTTGCTTAAAGGTGCTTG+TGG | + | chr2_3:7741411-7741430 | Msa0275590:CDS | 40.0% |
| ! | ATTAGAACCGATTTCTTGCC+GGG | + | chr2_3:7741977-7741996 | Msa0275590:intron | 40.0% |
| GGACGAAGTTCAAATTTCCT+CGG | - | chr2_3:7742022-7742041 | None:intergenic | 40.0% | |
| CTTCGTCCCTTAGAATTACA+AGG | + | chr2_3:7742034-7742053 | Msa0275590:intron | 40.0% | |
| ! | TGTTTCTACTCAACAGCAGT+TGG | + | chr2_3:7742240-7742259 | Msa0275590:CDS | 40.0% |
| CAAATTTCCTCCTCATTAGC+AGG | - | chr2_3:7742312-7742331 | None:intergenic | 40.0% | |
| CTGCTAATGAGGAGGAAATT+TGG | + | chr2_3:7742310-7742329 | Msa0275590:CDS | 40.0% | |
| GCTAATGAGGAGGAAATTTG+GGG | + | chr2_3:7742312-7742331 | Msa0275590:CDS | 40.0% | |
| ! | AATTTGGGGTGCAACTTTCA+AGG | + | chr2_3:7742326-7742345 | Msa0275590:CDS | 40.0% |
| AACACAGGATGGAATGGGAT+GGG | - | chr2_3:7736248-7736267 | None:intergenic | 45.0% | |
| TAACACAGGATGGAATGGGA+TGG | - | chr2_3:7736249-7736268 | None:intergenic | 45.0% | |
| CCCTAGTGTTTAACACAGGA+TGG | - | chr2_3:7736259-7736278 | None:intergenic | 45.0% | |
| TGCTGAAAAGGTTTGTGGAG+AGG | + | chr2_3:7736421-7736440 | Msa0275590:CDS | 45.0% | |
| GAAAAGGTTTGTGGAGAGGA+AGG | + | chr2_3:7736425-7736444 | Msa0275590:CDS | 45.0% | |
| ! | GTTGGCTTATACACACCATG+AGG | + | chr2_3:7736485-7736504 | Msa0275590:CDS | 45.0% |
| GCCACTAGTTAGTGATCCAA+TGG | - | chr2_3:7736731-7736750 | None:intergenic | 45.0% | |
| CTGCGTGATCCTAACTTCAT+CGG | + | chr2_3:7737343-7737362 | Msa0275590:intron | 45.0% | |
| AGTCGGTGAAAGAGGAGATT+AGG | + | chr2_3:7737714-7737733 | Msa0275590:intron | 45.0% | |
| GGAGATTAGGATCAAGATGG+GGG | + | chr2_3:7737727-7737746 | Msa0275590:intron | 45.0% | |
| ATCCTTGCAAAACCGGAAAC+CGG | - | chr2_3:7738106-7738125 | None:intergenic | 45.0% | |
| ! | TTTGGAACGACAATGGACTC+GGG | - | chr2_3:7738647-7738666 | None:intergenic | 45.0% |
| !! | CTTTGGAACGACAATGGACT+CGG | - | chr2_3:7738648-7738667 | None:intergenic | 45.0% |
| GCATGACAAAGACACCTTAC+AGG | - | chr2_3:7739242-7739261 | None:intergenic | 45.0% | |
| CACAAATTGTCGTGACGCAA+AGG | - | chr2_3:7739274-7739293 | None:intergenic | 45.0% | |
| !! | CTCGTATTGGTTGATCATGG+GGG | - | chr2_3:7739325-7739344 | None:intergenic | 45.0% |
| !! | GCTCGTATTGGTTGATCATG+GGG | - | chr2_3:7739326-7739345 | None:intergenic | 45.0% |
| !! | GGCTCGTATTGGTTGATCAT+GGG | - | chr2_3:7739327-7739346 | None:intergenic | 45.0% |
| !! | AGGCTCGTATTGGTTGATCA+TGG | - | chr2_3:7739328-7739347 | None:intergenic | 45.0% |
| TGGTCAAAGAAAGTTGAGCC+AGG | - | chr2_3:7739903-7739922 | None:intergenic | 45.0% | |
| TTTCGTGGTCACTTCAACTG+GGG | + | chr2_3:7739938-7739957 | Msa0275590:intron | 45.0% | |
| GGCCTAAGAAGGATGGAATA+AGG | + | chr2_3:7740075-7740094 | Msa0275590:intron | 45.0% | |
| TGAGACTGAGAAGTGAAGAG+AGG | + | chr2_3:7740197-7740216 | Msa0275590:intron | 45.0% | |
| GAGACTGAGAAGTGAAGAGA+GGG | + | chr2_3:7740198-7740217 | Msa0275590:intron | 45.0% | |
| !! | CTCTACTTGGGTTAGTGAAG+AGG | - | chr2_3:7740465-7740484 | None:intergenic | 45.0% |
| TGTTAGGTCATTCGCTGTGA+AGG | + | chr2_3:7741003-7741022 | Msa0275590:intron | 45.0% | |
| GGAAGCTTGAGACAGCAATA+TGG | + | chr2_3:7741067-7741086 | Msa0275590:CDS | 45.0% | |
| TCACTTGCTTCTTTCCCTCA+AGG | + | chr2_3:7741438-7741457 | Msa0275590:CDS | 45.0% | |
| GTGGTCCCACGTCAAATTAA+TGG | - | chr2_3:7741919-7741938 | None:intergenic | 45.0% | |
| CATTAGTCCCGGCAAGAAAT+CGG | - | chr2_3:7741987-7742006 | None:intergenic | 45.0% | |
| TTCTACTCAACAGCAGTTGG+AGG | + | chr2_3:7742243-7742262 | Msa0275590:CDS | 45.0% | |
| TCTACTCAACAGCAGTTGGA+GGG | + | chr2_3:7742244-7742263 | Msa0275590:CDS | 45.0% | |
| ACTGTTGCCTCGTGAATAAG+TGG | - | chr2_3:7742825-7742844 | None:intergenic | 45.0% | |
| !! | AAACAAAAATAATTAAAATA+TGG | + | chr2_3:7737208-7737227 | Msa0275590:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTTAAGA+AGG | + | chr2_3:7737247-7737266 | Msa0275590:intron | 5.0% |
| !!! | TTTTTATTTATTTGAAAAAT+AGG | + | chr2_3:7737616-7737635 | Msa0275590:intron | 5.0% |
| !!! | TTTTTAAAAATATACATTTT+TGG | + | chr2_3:7741533-7741552 | Msa0275590:intron | 5.0% |
| GGGGATATTCAGTAGCTCAG+TGG | + | chr2_3:7736329-7736348 | Msa0275590:CDS | 50.0% | |
| AGCAAATTCGCCGACGTCTT+CGG | - | chr2_3:7736402-7736421 | None:intergenic | 50.0% | |
| !! | CGGCGAATTTGCTGCTGAAA+AGG | + | chr2_3:7736409-7736428 | Msa0275590:CDS | 50.0% |
| TGCTGATAACAGTGACCGGA+GGG | - | chr2_3:7736834-7736853 | None:intergenic | 50.0% | |
| TTGCTGATAACAGTGACCGG+AGG | - | chr2_3:7736835-7736854 | None:intergenic | 50.0% | |
| !! | AACAATTTGGGTGGTGGGGT+AGG | + | chr2_3:7737660-7737679 | Msa0275590:intron | 50.0% |
| ! | TGTCTTTGTCTTTGAGGGGG+TGG | + | chr2_3:7738007-7738026 | Msa0275590:intron | 50.0% |
| !! | AAACCGGAAACCGGCTTGTA+AGG | - | chr2_3:7738097-7738116 | None:intergenic | 50.0% |
| ! | GACAATGGACTCGGGTACTT+AGG | - | chr2_3:7738639-7738658 | None:intergenic | 50.0% |
| CGAGTCCATTGTCGTTCCAA+AGG | + | chr2_3:7738646-7738665 | Msa0275590:intron | 50.0% | |
| ! | AGCGACAAAGAGTGTGGAAG+TGG | - | chr2_3:7741227-7741246 | None:intergenic | 50.0% |
| TACGGAAGCGACAAAGAGTG+TGG | - | chr2_3:7741233-7741252 | None:intergenic | 50.0% | |
| TACTGCAGTGCCTGCTAATG+AGG | + | chr2_3:7742299-7742318 | Msa0275590:CDS | 50.0% | |
| TAGCTCAGTGGTGTCTCCTC+CGG | + | chr2_3:7736341-7736360 | Msa0275590:CDS | 55.0% | |
| CACACCATGAGGAGTCACCT+TGG | + | chr2_3:7736496-7736515 | Msa0275590:CDS | 55.0% | |
| GTTGCCAAGGTGACTCCTCA+TGG | - | chr2_3:7736503-7736522 | None:intergenic | 55.0% | |
| AGGAGTCACCTTGGCAACCA+AGG | + | chr2_3:7736505-7736524 | Msa0275590:CDS | 55.0% | |
| GACCGGAGGGAGTAGTTATG+AGG | + | chr2_3:7736964-7736983 | Msa0275590:intron | 55.0% | |
| CGCCTCATAACTACTCCCTC+CGG | - | chr2_3:7736969-7736988 | None:intergenic | 55.0% | |
| GTTGAAGGCCCCAGAAGAGA+AGG | + | chr2_3:7737566-7737585 | Msa0275590:intron | 55.0% | |
| TCCACTCGGCCTTCTCTTCT+GGG | - | chr2_3:7737578-7737597 | None:intergenic | 55.0% | |
| !! | ATTTGGGTGGTGGGGTAGGT+AGG | + | chr2_3:7737664-7737683 | Msa0275590:intron | 55.0% |
| GGGGTAGGTAGGTGATCCAA+TGG | + | chr2_3:7737675-7737694 | Msa0275590:intron | 55.0% | |
| ACACACCCTGCCTTACAAGC+CGG | + | chr2_3:7738084-7738103 | Msa0275590:intron | 55.0% | |
| !! | GGAAACCGGCTTGTAAGGCA+GGG | - | chr2_3:7738092-7738111 | None:intergenic | 55.0% |
| ! | CTGCCTTACAAGCCGGTTTC+CGG | + | chr2_3:7738091-7738110 | Msa0275590:intron | 55.0% |
| !! | AGCCGGTTTCCGGTTTTGCA+AGG | + | chr2_3:7738101-7738120 | Msa0275590:intron | 55.0% |
| CGTGACGCAAAGGGAGACTA+TGG | - | chr2_3:7739264-7739283 | None:intergenic | 55.0% | |
| TGGACAGTGCACACCCAAAG+TGG | - | chr2_3:7739984-7740003 | None:intergenic | 55.0% | |
| TGGAGTAGGTTGTTGGGACC+AGG | + | chr2_3:7740110-7740129 | Msa0275590:intron | 55.0% | |
| TAAAGGTGGATCATCGCGGG+TGG | - | chr2_3:7740410-7740429 | None:intergenic | 55.0% | |
| TGCAGTGCCTGCTAATGAGG+AGG | + | chr2_3:7742302-7742321 | Msa0275590:CDS | 55.0% | |
| TCTGTGGCTGCAAGAACTGC+TGG | - | chr2_3:7742456-7742475 | None:intergenic | 55.0% | |
| ACGTCTTCGGCGACGGTGTT+CGG | - | chr2_3:7736389-7736408 | None:intergenic | 60.0% | |
| AACACCGTCGCCGAAGACGT+CGG | + | chr2_3:7736389-7736408 | Msa0275590:CDS | 60.0% | |
| ! | TCAGCCGTGTCACTGCAGGT+TGG | + | chr2_3:7736450-7736469 | Msa0275590:CDS | 60.0% |
| ! | CAGCCGTGTCACTGCAGGTT+GGG | + | chr2_3:7736451-7736470 | Msa0275590:CDS | 60.0% |
| ! | AGCCGTGTCACTGCAGGTTG+GGG | + | chr2_3:7736452-7736471 | Msa0275590:CDS | 60.0% |
| CTCCCCAACCTGCAGTGACA+CGG | - | chr2_3:7736457-7736476 | None:intergenic | 60.0% | |
| GGTTGGGGAGGATGTGCAGT+TGG | + | chr2_3:7736467-7736486 | Msa0275590:CDS | 60.0% | |
| CCACTCGGCCTTCTCTTCTG+GGG | - | chr2_3:7737577-7737596 | None:intergenic | 60.0% | |
| CTCCACTCGGCCTTCTCTTC+TGG | - | chr2_3:7737579-7737598 | None:intergenic | 60.0% | |
| !! | CGGAAACCGGCTTGTAAGGC+AGG | - | chr2_3:7738093-7738112 | None:intergenic | 60.0% |
| CTCAGTGGTGTCTCCTCCGG+AGG | + | chr2_3:7736344-7736363 | Msa0275590:CDS | 65.0% | |
| TTCGCCGACGTCTTCGGCGA+CGG | - | chr2_3:7736396-7736415 | None:intergenic | 65.0% | |
| ! | GGCTTCAGCCGTGTCACTGC+AGG | + | chr2_3:7736446-7736465 | Msa0275590:CDS | 65.0% |
| ! | CGTGTCACTGCAGGTTGGGG+AGG | + | chr2_3:7736455-7736474 | Msa0275590:CDS | 65.0% |
| CCCCAGAAGAGAAGGCCGAG+TGG | + | chr2_3:7737574-7737593 | Msa0275590:intron | 65.0% | |
| GGTGTCTCCTCCGGAGGAGC+TGG | + | chr2_3:7736350-7736369 | Msa0275590:CDS | 70.0% | |
| GTCTCCTCCGGAGGAGCTGG+TGG | + | chr2_3:7736353-7736372 | Msa0275590:CDS | 70.0% | |
| CCAGCAGCCACCAGCTCCTC+CGG | - | chr2_3:7736363-7736382 | None:intergenic | 70.0% | |
| GCAGCCACCAGCTCCTCCGG+AGG | - | chr2_3:7736360-7736379 | None:intergenic | 75.0% | |
| CCGGAGGAGCTGGTGGCTGC+TGG | + | chr2_3:7736360-7736379 | Msa0275590:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 7736243 | 7742847 | 7736243 | ID=Msa0275590;Name=Msa0275590 |
| chr2_3 | mRNA | 7736243 | 7742847 | 7736243 | ID=Msa0275590-mRNA-1;Parent=Msa0275590;Name=Msa0275590-mRNA-1;_AED=0.01;_eAED=0.01;_QI=81|1|1|1|1|1|5|368|236 |
| chr2_3 | exon | 7736243 | 7736526 | 7736243 | ID=Msa0275590-mRNA-1:exon:3496;Parent=Msa0275590-mRNA-1 |
| chr2_3 | exon | 7741009 | 7741249 | 7741009 | ID=Msa0275590-mRNA-1:exon:3497;Parent=Msa0275590-mRNA-1 |
| chr2_3 | exon | 7741339 | 7741459 | 7741339 | ID=Msa0275590-mRNA-1:exon:3498;Parent=Msa0275590-mRNA-1 |
| chr2_3 | exon | 7742238 | 7742347 | 7742238 | ID=Msa0275590-mRNA-1:exon:3499;Parent=Msa0275590-mRNA-1 |
| chr2_3 | exon | 7742444 | 7742847 | 7742444 | ID=Msa0275590-mRNA-1:exon:3500;Parent=Msa0275590-mRNA-1 |
| chr2_3 | five_prime_UTR | 7736243 | 7736323 | 7736243 | ID=Msa0275590-mRNA-1:five_prime_utr;Parent=Msa0275590-mRNA-1 |
| chr2_3 | CDS | 7736324 | 7736526 | 7736324 | ID=Msa0275590-mRNA-1:cds;Parent=Msa0275590-mRNA-1 |
| chr2_3 | CDS | 7741009 | 7741249 | 7741009 | ID=Msa0275590-mRNA-1:cds;Parent=Msa0275590-mRNA-1 |
| chr2_3 | CDS | 7741339 | 7741459 | 7741339 | ID=Msa0275590-mRNA-1:cds;Parent=Msa0275590-mRNA-1 |
| chr2_3 | CDS | 7742238 | 7742347 | 7742238 | ID=Msa0275590-mRNA-1:cds;Parent=Msa0275590-mRNA-1 |
| chr2_3 | CDS | 7742444 | 7742479 | 7742444 | ID=Msa0275590-mRNA-1:cds;Parent=Msa0275590-mRNA-1 |
| chr2_3 | three_prime_UTR | 7742480 | 7742847 | 7742480 | ID=Msa0275590-mRNA-1:three_prime_utr;Parent=Msa0275590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
