AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1345380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1345380 MtrunA17_Chr2g0287871 99.153 236 2 0 1 236 1 236 2.55e-176 483
Msa1345380 MtrunA17_Chr4g0065571 82.700 237 40 1 1 236 1 237 1.69e-145 405
Msa1345380 MtrunA17_Chr1g0166351 47.257 237 121 3 1 235 1 235 1.31e-73 224
Msa1345380 MtrunA17_Chr1g0204611 43.038 237 131 3 1 235 1 235 4.10e-67 207
Msa1345380 MtrunA17_Chr4g0047531 41.949 236 122 5 1 227 64 293 3.04e-58 187
Msa1345380 MtrunA17_Chr2g0281901 40.435 230 133 3 1 227 1 229 1.18e-57 183
Msa1345380 MtrunA17_Chr2g0317901 42.060 233 126 6 1 227 1 230 8.94e-51 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1345380 AT5G19140.1 83.262 233 39 0 1 233 1 233 2.01e-147 410
Msa1345380 AT5G19140.2 78.112 233 39 1 1 233 1 221 1.96e-134 377
Msa1345380 AT5G19140.3 87.952 166 20 0 68 233 32 197 9.44e-109 311
Msa1345380 AT5G43830.1 42.795 229 128 2 1 227 1 228 1.53e-64 201
Msa1345380 AT3G22850.1 42.918 233 127 4 1 230 1 230 5.67e-62 194
Msa1345380 AT4G27450.1 43.966 232 124 4 1 227 1 231 5.15e-59 187
Msa1345380 AT3G15450.1 41.810 232 128 5 1 227 1 230 6.42e-57 182
Msa1345380 AT3G15450.2 43.750 192 104 3 1 189 1 191 3.67e-48 158
Msa1345380 AT3G15450.3 43.787 169 91 3 1 166 1 168 1.55e-39 135

Find 93 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGATGCTGATTTGCTTAA+AGG 0.139816 tig0007116:-54028 Msa1345380:CDS
CTGGAAAGGTTCCTCTATAT+TGG 0.254858 tig0007116:-54084 Msa1345380:CDS
CTGCTAATGAGGAGGAAATT+TGG 0.258669 tig0007116:-53120 Msa1345380:CDS
CAGCTGTGTCACTGCAGGTT+GGG 0.279911 tig0007116:-59076 Msa1345380:CDS
GAGTAAACCTATTTACATTA+TGG 0.292540 tig0007116:+52861 None:intergenic
TGCTAATGAGGAGGAAATTT+GGG 0.296941 tig0007116:-53119 Msa1345380:CDS
ACTGCAGTAATCTTATTCTT+TGG 0.306160 tig0007116:+53145 None:intergenic
TCATATGATGGATGCATTAA+TGG 0.311458 tig0007116:-52930 Msa1345380:three_prime_UTR
TGGAAAGGTTCCTCTATATT+GGG 0.314487 tig0007116:-54083 Msa1345380:CDS
CGGCGAATTTGCTGCTGAAA+AGG 0.343100 tig0007116:-59118 Msa1345380:CDS
ACGTCTTCGGCGACGGTGTT+CGG 0.365937 tig0007116:+59141 None:intergenic
CTAAATTATTAGTTGAAAGA+TGG 0.383945 tig0007116:+52635 None:intergenic
CCATCATATGATACTCCATT+TGG 0.389370 tig0007116:+52942 None:intergenic
GAAGGGACCATAATGTAAAT+AGG 0.389382 tig0007116:-52868 Msa1345380:three_prime_UTR
GGTGTCTCCTCCGGAGGAGC+TGG 0.391500 tig0007116:-59177 Msa1345380:CDS
AATCATAAGAACTACTTCAT+TGG 0.401392 tig0007116:+54326 None:intergenic
AGCAAATTCGCCGACGTCTT+CGG 0.404314 tig0007116:+59128 None:intergenic
GGATGCATTAATGGAGTAAT+GGG 0.406465 tig0007116:-52921 Msa1345380:three_prime_UTR
CCGGAGGAGCTGGTGGCTGC+TGG 0.409045 tig0007116:-59167 Msa1345380:CDS
CCAGCAGCCACCAGCTCCTC+CGG 0.411220 tig0007116:+59167 None:intergenic
TACTCATAATTGTGGAGAAT+GGG 0.413766 tig0007116:-52843 Msa1345380:three_prime_UTR
GGAAGCTTGAGACAGCAATA+TGG 0.415780 tig0007116:-54363 Msa1345380:CDS
CATGTTGTTGGTCATCTTAG+TGG 0.419413 tig0007116:-54258 Msa1345380:CDS
TCAGCTGTGTCACTGCAGGT+TGG 0.420834 tig0007116:-59077 Msa1345380:CDS
GAGATATTCTGCTTGTTTGA+AGG 0.432657 tig0007116:-54402 Msa1345380:CDS
TATTACATTCGAAATGCAAC+TGG 0.435758 tig0007116:+52740 None:intergenic
GGCTTCAGCTGTGTCACTGC+AGG 0.449893 tig0007116:-59081 Msa1345380:CDS
AATTTGGGGTGCAACTTTCA+AGG 0.452853 tig0007116:-53104 Msa1345380:intron
AGCTGTGTCACTGCAGGTTG+GGG 0.453837 tig0007116:-59075 Msa1345380:CDS
TACCCTGCTAATCATGTTGT+TGG 0.455247 tig0007116:-54270 Msa1345380:CDS
GGTTGGGGAGGATGTGCAGT+TGG 0.462373 tig0007116:-59060 Msa1345380:CDS
ATAGAGGAACCTTTCCAGAT+TGG 0.466519 tig0007116:+54089 None:intergenic
AATTACTAAACTCACCTTGA+GGG 0.470171 tig0007116:+53978 None:intergenic
CAAATTTCCTCCTCATTAGC+AGG 0.476725 tig0007116:+53121 None:intergenic
TACTGCAGTGCCTGCTAATG+AGG 0.480593 tig0007116:-53131 Msa1345380:CDS
TTACTCATAATTGTGGAGAA+TGG 0.485261 tig0007116:-52844 Msa1345380:three_prime_UTR
TGACCAACAACATGATTAGC+AGG 0.488097 tig0007116:+54267 None:intergenic
AGCGACAAAGAGTGTGGAAG+TGG 0.491542 tig0007116:+54206 None:intergenic
TTTGCTGCTGAAAAGGTTTG+TGG 0.496279 tig0007116:-59111 Msa1345380:CDS
TGTTTAACACAGGATGGAAT+GGG 0.496845 tig0007116:+59278 None:intergenic
TCTGTGGCTGCAAGAACTGC+TGG 0.497107 tig0007116:+52977 None:intergenic
GTGTTTAACACAGGATGGAA+TGG 0.498789 tig0007116:+59277 None:intergenic
AGAGTAGATATCTTTCCAAA+TGG 0.504047 tig0007116:-52957 Msa1345380:exon
GTCTCCTCCGGAGGAGCTGG+TGG 0.505758 tig0007116:-59174 Msa1345380:CDS
GAAGGATCTCTAGACAATCT+AGG 0.508330 tig0007116:-54384 Msa1345380:CDS
AAAATTTACCTTGGTTGCCA+AGG 0.511220 tig0007116:+59014 None:intergenic
TAGCTCAGTGGTGTCTCCTC+CGG 0.513586 tig0007116:-59186 Msa1345380:CDS
CCCTAGTGTTTAACACAGGA+TGG 0.516967 tig0007116:+59272 None:intergenic
CAGGATGGAATGGGATGGGA+TGG 0.517592 tig0007116:+59287 None:intergenic
AATAGGTTTACTCATAATTG+TGG 0.518436 tig0007116:-52851 Msa1345380:three_prime_UTR
TGACTATAAGACATGTATGA+AGG 0.522758 tig0007116:-52886 Msa1345380:three_prime_UTR
TTCTACTCAACAGCAGTTGG+AGG 0.526910 tig0007116:-53187 Msa1345380:CDS
TGTTTCTACTCAACAGCAGT+TGG 0.527144 tig0007116:-53190 Msa1345380:CDS
GAAAAGGTTTGTGGAGAGGA+AGG 0.528744 tig0007116:-59102 Msa1345380:CDS
TCACTTGCTTCTTTCCCTCA+AGG 0.530143 tig0007116:-53992 Msa1345380:intron
TATTGGGGAATAACTGCTGA+TGG 0.537056 tig0007116:-54067 Msa1345380:CDS
CCAAATGGAGTATCATATGA+TGG 0.537769 tig0007116:-52942 Msa1345380:three_prime_UTR
TTCGCCGACGTCTTCGGCGA+CGG 0.538831 tig0007116:+59134 None:intergenic
GCAGTTATTCCCCAATATAG+AGG 0.541559 tig0007116:+54073 None:intergenic
GTTGCCAAGGTGACTCCTCA+TGG 0.551115 tig0007116:+59027 None:intergenic
ACTGTTGCCTCGTGAATAAG+TGG 0.553744 tig0007116:+52605 None:intergenic
TGTTAGGTCATTCGCTGTGA+AGG 0.555236 tig0007116:-54427 Msa1345380:intron
TTGATAGGACCAATCTGGAA+AGG 0.557100 tig0007116:-54098 Msa1345380:intron
TGGATGCATTAATGGAGTAA+TGG 0.560531 tig0007116:-52922 Msa1345380:three_prime_UTR
ATGATGAATTAACAGGTGGA+AGG 0.564009 tig0007116:-53001 Msa1345380:intron
TGATGAATTAACAGGTGGAA+GGG 0.565942 tig0007116:-53000 Msa1345380:intron
TCCATCCTGTGTTAAACACT+AGG 0.566125 tig0007116:-59273 Msa1345380:five_prime_UTR
AACACAGGATGGAATGGGAT+GGG 0.573277 tig0007116:+59283 None:intergenic
ACAACATGATTAGCAGGGTA+AGG 0.573620 tig0007116:+54273 None:intergenic
GATTTGCTTAAAGGTGCTTG+TGG 0.579022 tig0007116:-54019 Msa1345380:CDS
CTCAGTGGTGTCTCCTCCGG+AGG 0.585477 tig0007116:-59183 Msa1345380:CDS
CACACCATGAGGAGTCACCT+TGG 0.585888 tig0007116:-59031 Msa1345380:CDS
TGTGTCACTGCAGGTTGGGG+AGG 0.595317 tig0007116:-59072 Msa1345380:CDS
TCTACTCAACAGCAGTTGGA+GGG 0.599031 tig0007116:-53186 Msa1345380:CDS
AGGAGTCACCTTGGCAACCA+AGG 0.601615 tig0007116:-59022 Msa1345380:intron
CCATCCTGTGTTAAACACTA+GGG 0.602166 tig0007116:-59272 Msa1345380:five_prime_UTR
TAACACAGGATGGAATGGGA+TGG 0.604414 tig0007116:+59282 None:intergenic
GACTATAAGACATGTATGAA+GGG 0.605400 tig0007116:-52885 Msa1345380:three_prime_UTR
CAAATCAGCATCATCAGCAA+AGG 0.606251 tig0007116:+54036 None:intergenic
GGAAAGGTTCCTCTATATTG+GGG 0.613894 tig0007116:-54082 Msa1345380:CDS
GCAGCCACCAGCTCCTCCGG+AGG 0.614698 tig0007116:+59170 None:intergenic
AGGATGGAATGGGATGGGAT+GGG 0.619943 tig0007116:+59288 None:intergenic
TGCAGTGCCTGCTAATGAGG+AGG 0.621425 tig0007116:-53128 Msa1345380:CDS
TACGGAAGCGACAAAGAGTG+TGG 0.626189 tig0007116:+54200 None:intergenic
TTGTCCCTAGTGTTTAACAC+AGG 0.634689 tig0007116:+59268 None:intergenic
TGCTGAAAAGGTTTGTGGAG+AGG 0.654631 tig0007116:-59106 Msa1345380:CDS
GGGGATATTCAGTAGCTCAG+TGG 0.666441 tig0007116:-59198 Msa1345380:CDS
GACCAACAACATGATTAGCA+GGG 0.670833 tig0007116:+54268 None:intergenic
GCTAATGAGGAGGAAATTTG+GGG 0.677443 tig0007116:-53118 Msa1345380:CDS
TAATGATCCACTTATTCACG+AGG 0.678974 tig0007116:-52612 Msa1345380:three_prime_UTR
AACACCGTCGCCGAAGACGT+CGG 0.682410 tig0007116:-59138 Msa1345380:CDS
TTGGAAAGATATCTACTCTG+TGG 0.685063 tig0007116:+52961 None:intergenic
GTTGGCTTATACACACCATG+AGG 0.770040 tig0007116:-59042 Msa1345380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTATTATGAAATTG+TGG - tig0007116:54663-54682 Msa1345380:intron 10.0%
!!! ATTTTTCGTAAAAAAAAAAA+TGG + tig0007116:54891-54910 None:intergenic 10.0%
!! GATATTTAATCATAATATAT+AGG + tig0007116:55234-55253 None:intergenic 10.0%
!!! CTATTTAAAACAAAATTTAT+AGG + tig0007116:55256-55275 None:intergenic 10.0%
!! AAAAATATAAGAAAAATAGT+AGG + tig0007116:55513-55532 None:intergenic 10.0%
!! GGTAAAAAAATAAATTAAAA+GGG + tig0007116:57745-57764 None:intergenic 10.0%
!! TGGTAAAAAAATAAATTAAA+AGG + tig0007116:57746-57765 None:intergenic 10.0%
!!! ATAAGCAAATTTTTACATTT+TGG - tig0007116:53206-53225 Msa1345380:intron 15.0%
!!! TAAGTAAATTTTGACTTTTT+AGG + tig0007116:53296-53315 None:intergenic 15.0%
!!! AATAAAACTTGTTGAAATTT+GGG + tig0007116:54540-54559 None:intergenic 15.0%
!! ACATTTGTTTAAAAAGAAAA+GGG + tig0007116:56060-56079 None:intergenic 15.0%
!!! TGTAATTTTTACCAAAATAA+AGG + tig0007116:56884-56903 None:intergenic 15.0%
!!! TTTTAAAGACAAAATTTTAG+TGG - tig0007116:57260-57279 Msa1345380:intron 15.0%
!!! TTTAGTGGTAAATTTTTTAA+AGG - tig0007116:57275-57294 Msa1345380:intron 15.0%
!!! TTAGTGGTAAATTTTTTAAA+GGG - tig0007116:57276-57295 Msa1345380:intron 15.0%
!!! TTGTTTGTATTATTTTTGAT+AGG - tig0007116:57774-57793 Msa1345380:intron 15.0%
!!! TTTAAAAAGTTCAATTTTCT+AGG + tig0007116:57978-57997 None:intergenic 15.0%
!! ATTTACTATTTATAAGATGT+TGG + tig0007116:58536-58555 None:intergenic 15.0%
!! AATATGACATATTTATAAGT+AGG - tig0007116:58553-58572 Msa1345380:intron 15.0%
!! ATATGACATATTTATAAGTA+GGG - tig0007116:58554-58573 Msa1345380:intron 15.0%
!! TTTAGAGAGAAAAAATATGT+TGG - tig0007116:52668-52687 Msa1345380:three_prime_UTR 20.0%
!! TTAGAGAGAAAAAATATGTT+GGG - tig0007116:52669-52688 Msa1345380:three_prime_UTR 20.0%
!! AATAAAATATAAGAAGTGGT+CGG + tig0007116:53400-53419 None:intergenic 20.0%
!! GTAATAGAAATAGTGTTTAT+TGG - tig0007116:54330-54349 Msa1345380:CDS 20.0%
!!! ATAAAACTTGTTGAAATTTG+GGG + tig0007116:54539-54558 None:intergenic 20.0%
!!! GAATAAAACTTGTTGAAATT+TGG + tig0007116:54541-54560 None:intergenic 20.0%
!! TTCAACCATAATATATTTCA+GGG - tig0007116:54702-54721 Msa1345380:intron 20.0%
!! TTAACTAGATTAAACTATGT+TGG + tig0007116:54833-54852 None:intergenic 20.0%
!! AAGAATTTATCAAAAAAAGC+TGG + tig0007116:55128-55147 None:intergenic 20.0%
!! TCAATTTAATTAACCAAACA+AGG - tig0007116:55299-55318 Msa1345380:intron 20.0%
!! ATTGATAAAAATATCCTGTA+AGG - tig0007116:55627-55646 Msa1345380:intron 20.0%
!! TAAACTAAACAAGAAAAGAT+AGG + tig0007116:55750-55769 None:intergenic 20.0%
!! AAATTAGAGTTAAAAAGCTA+TGG - tig0007116:55771-55790 Msa1345380:intron 20.0%
!! CACATTTGTTTAAAAAGAAA+AGG + tig0007116:56061-56080 None:intergenic 20.0%
!!! TCTTTTTAAACAAATGTGAA+AGG - tig0007116:56063-56082 Msa1345380:intron 20.0%
!! AGTGATGATTTAATTGTTTA+AGG + tig0007116:56244-56263 None:intergenic 20.0%
!! AAATTTCCTTATCAAATGTT+AGG - tig0007116:56324-56343 Msa1345380:intron 20.0%
!!! CTTTGGAATATTTTTTCTTA+TGG - tig0007116:56511-56530 Msa1345380:intron 20.0%
!!! TCTTTGTCTTATTGTTTATA+TGG + tig0007116:56608-56627 None:intergenic 20.0%
!! ACAAATAGAGATAATAGAAA+GGG - tig0007116:56678-56697 Msa1345380:intron 20.0%
!!! AATTTTTACCAAAATAAAGG+TGG + tig0007116:56881-56900 None:intergenic 20.0%
!! TATATTACACACACTTAAAT+TGG - tig0007116:56959-56978 Msa1345380:intron 20.0%
!!! ATATTTGAGTTGAAAATGTT+AGG - tig0007116:57444-57463 Msa1345380:intron 20.0%
!! TTAAAAGGGACTTATAATAA+GGG + tig0007116:57731-57750 None:intergenic 20.0%
!! ATTAAAAGGGACTTATAATA+AGG + tig0007116:57732-57751 None:intergenic 20.0%
!! AATTTGGTTAAAATTGAGTT+TGG + tig0007116:58171-58190 None:intergenic 20.0%
!! GACTTCAAATGAATTTAATT+TGG + tig0007116:58187-58206 None:intergenic 20.0%
!! TATGACATATTTATAAGTAG+GGG - tig0007116:58555-58574 Msa1345380:intron 20.0%
!! CAATAATGAGAGAATAAATT+AGG + tig0007116:58649-58668 None:intergenic 20.0%
!! GATATTTATGATGAATTAAC+AGG - tig0007116:58879-58898 Msa1345380:intron 20.0%
!! ATAATAAAAATATATGCGTC+TGG - tig0007116:59167-59186 Msa1345380:CDS 20.0%
!! CTAAATTATTAGTTGAAAGA+TGG + tig0007116:59255-59274 None:intergenic 20.0%
! TAGAGAGAAAAAATATGTTG+GGG - tig0007116:52670-52689 Msa1345380:three_prime_UTR 25.0%
! TCATGAGTAAATTTCTTTCT+TGG + tig0007116:52996-53015 None:intergenic 25.0%
! GAGATAAATAAACATAAGAG+TGG + tig0007116:53120-53139 None:intergenic 25.0%
!! AATTTGCTTATAACAGTAAC+CGG + tig0007116:53197-53216 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG + tig0007116:53271-53290 None:intergenic 25.0%
! CTCGAATAAAATATAAGAAG+TGG + tig0007116:53404-53423 None:intergenic 25.0%
! CTCGAATAAAATATAAGAAG+TGG + tig0007116:53404-53423 None:intergenic 25.0%
! TCGAGAGCTATTATAATTAT+AGG - tig0007116:53419-53438 Msa1345380:intron 25.0%
! TTTGCTCTATGTAATGTATA+CGG + tig0007116:53532-53551 None:intergenic 25.0%
! ACGAAAACTAGAATAAAACT+GGG + tig0007116:53900-53919 None:intergenic 25.0%
! TGTTGCAATAGTAACAATTT+GGG - tig0007116:54037-54056 Msa1345380:CDS 25.0%
!!! TCATTTTTGATGGATCATTA+AGG - tig0007116:54174-54193 Msa1345380:intron 25.0%
! TGGATCATTAAGGAAAAATA+AGG - tig0007116:54184-54203 Msa1345380:intron 25.0%
! CTTGATCAGAATTTATAAAG+TGG - tig0007116:54461-54480 Msa1345380:intron 25.0%
! GTTCAACCATAATATATTTC+AGG - tig0007116:54701-54720 Msa1345380:intron 25.0%
! GAAAACCCTGAAATATATTA+TGG + tig0007116:54710-54729 None:intergenic 25.0%
!!! TGTTTATTTGCTTTTTGCTA+AGG - tig0007116:54733-54752 Msa1345380:intron 25.0%
!!! CAAACTTTTTCAAAATGCAA+TGG - tig0007116:54911-54930 Msa1345380:intron 25.0%
! ATTAAGCAACATTGAGTTTA+TGG - tig0007116:54948-54967 Msa1345380:intron 25.0%
! TTAAGCAACATTGAGTTTAT+GGG - tig0007116:54949-54968 Msa1345380:intron 25.0%
! TTCAATAAACTTTGATCCTT+TGG + tig0007116:55067-55086 None:intergenic 25.0%
! TTTAATTAACCAAACAAGGT+AGG - tig0007116:55303-55322 Msa1345380:intron 25.0%
! CAGATTGAATTATTGATCTA+TGG - tig0007116:55701-55720 Msa1345380:intron 25.0%
! CCTATAATAAAAGACTAAAG+GGG + tig0007116:55813-55832 None:intergenic 25.0%
! CCCTATAATAAAAGACTAAA+GGG + tig0007116:55814-55833 None:intergenic 25.0%
!!! CCCTTTAGTCTTTTATTATA+GGG - tig0007116:55811-55830 Msa1345380:intron 25.0%
! TCCCTATAATAAAAGACTAA+AGG + tig0007116:55815-55834 None:intergenic 25.0%
! AATCTACAAATGAGTTTAAG+TGG - tig0007116:55852-55871 Msa1345380:intron 25.0%
! CTATCAATACATCTTAAGAT+TGG + tig0007116:55917-55936 None:intergenic 25.0%
!! CAATCTTAAGATGTATTGAT+AGG - tig0007116:55915-55934 Msa1345380:intron 25.0%
!! TTTTGTCCTAACATTTGATA+AGG + tig0007116:56333-56352 None:intergenic 25.0%
! GAATAAGGATAAGATTAATG+TGG - tig0007116:56547-56566 Msa1345380:intron 25.0%
! GACAAATAGAGATAATAGAA+AGG - tig0007116:56677-56696 Msa1345380:intron 25.0%
!!! TTTTAATTAGCACACGAATT+TGG - tig0007116:57062-57081 Msa1345380:intron 25.0%
! TTGGTTAAACACTTAACAAT+AGG - tig0007116:57081-57100 Msa1345380:intron 25.0%
! AAACTCAATTTCTATCTACT+CGG - tig0007116:57131-57150 Msa1345380:intron 25.0%
! GTTACCTATTTCATATTCAT+GGG - tig0007116:57153-57172 Msa1345380:intron 25.0%
! ATTAGAAATGAAACAGTACT+TGG - tig0007116:57185-57204 Msa1345380:intron 25.0%
! TACATGTCTTATACTAAACA+TGG + tig0007116:57232-57251 None:intergenic 25.0%
! GTTAACACAAAATTAAACTC+TGG - tig0007116:57310-57329 Msa1345380:intron 25.0%
! AATCATAAGAACTACTTCAT+TGG + tig0007116:57564-57583 None:intergenic 25.0%
! ACGGAGTTATAAATAACTTA+CGG + tig0007116:57708-57727 None:intergenic 25.0%
! TAATACAAACAAAACGCTAT+TGG + tig0007116:57766-57785 None:intergenic 25.0%
!! AATCTCTTAAGACTCTAAAA+AGG + tig0007116:58136-58155 None:intergenic 25.0%
!! AAATTCATTTGAAGTCAAGT+CGG - tig0007116:58191-58210 Msa1345380:intron 25.0%
! AATTCCAATTTCCAATGTTT+AGG - tig0007116:58263-58282 Msa1345380:intron 25.0%
!!! TTTATAAGATGTTGGTTTAG+TGG + tig0007116:58528-58547 None:intergenic 25.0%
! TTGTAAGAGACAATAGATAA+TGG + tig0007116:58857-58876 None:intergenic 25.0%
! ATTTATGATGAATTAACAGG+TGG - tig0007116:58882-58901 Msa1345380:intron 25.0%
! GAGTAAACCTATTTACATTA+TGG + tig0007116:59029-59048 None:intergenic 25.0%
! AATAGGTTTACTCATAATTG+TGG - tig0007116:59036-59055 Msa1345380:CDS 25.0%
!!! AGTTTTGTGTATTACTACAT+AGG - tig0007116:59101-59120 Msa1345380:CDS 25.0%
! GCAGTGTTTAAAATTTACCT+TGG + tig0007116:52885-52904 None:intergenic 30.0%
ATTACATAGAGCAAACATGT+AGG - tig0007116:53537-53556 Msa1345380:intron 30.0%
AAATATGGAACTAGCTCAAT+TGG - tig0007116:53607-53626 Msa1345380:intron 30.0%
!! TTCAATTGAGTTGAACTCAT+GGG - tig0007116:53679-53698 Msa1345380:intron 30.0%
! ATATATTCGCCGATTAAGTT+AGG + tig0007116:53743-53762 None:intergenic 30.0%
GACGAAAACTAGAATAAAAC+TGG + tig0007116:53901-53920 None:intergenic 30.0%
! ATTTTGTTCTTGTCTGTTGA+AGG - tig0007116:53940-53959 Msa1345380:intron 30.0%
GTGTTGCAATAGTAACAATT+TGG - tig0007116:54036-54055 Msa1345380:CDS 30.0%
!!! GATGTCATTGTCATTTTTGA+TGG - tig0007116:54164-54183 Msa1345380:intron 30.0%
CTGTCTAGTCAAAATGATTA+AGG - tig0007116:54262-54281 Msa1345380:CDS 30.0%
GACAAAGACAAGATAACATA+GGG + tig0007116:54399-54418 None:intergenic 30.0%
AGACAAAGACAAGATAACAT+AGG + tig0007116:54400-54419 None:intergenic 30.0%
TTATCTTGTCTTTGTCTTTG+AGG - tig0007116:54403-54422 Msa1345380:CDS 30.0%
TATCTTGTCTTTGTCTTTGA+GGG - tig0007116:54404-54423 Msa1345380:CDS 30.0%
TAGTCTCATATCGAATAGAT+AGG - tig0007116:54435-54454 Msa1345380:intron 30.0%
ATAATTCATCCTTGCAAAAC+CGG + tig0007116:54515-54534 None:intergenic 30.0%
!!! TCACCATAAACTCTAGTTTT+TGG - tig0007116:54559-54578 Msa1345380:intron 30.0%
CATCCAAAAACTAGAGTTTA+TGG + tig0007116:54565-54584 None:intergenic 30.0%
AGATTAAACTATGTTGGATG+AGG + tig0007116:54827-54846 None:intergenic 30.0%
! TTTTCAAAATGCAATGGATG+TGG - tig0007116:54917-54936 Msa1345380:intron 30.0%
TAAGCAACATTGAGTTTATG+GGG - tig0007116:54950-54969 Msa1345380:intron 30.0%
AGTAATTATTGTTGCTGATG+TGG - tig0007116:55197-55216 Msa1345380:intron 30.0%
GTAATTATTGTTGCTGATGT+GGG - tig0007116:55198-55217 Msa1345380:intron 30.0%
GTCACAAAGAATGTGAAAAT+AGG - tig0007116:55447-55466 Msa1345380:intron 30.0%
AAAATAGGTTAGACTGAGTT+AGG - tig0007116:55462-55481 Msa1345380:intron 30.0%
!! CCCCTTTAGTCTTTTATTAT+AGG - tig0007116:55810-55829 Msa1345380:intron 30.0%
!! TCAATAAGAAGTTAGCTTTC+AGG + tig0007116:56187-56206 None:intergenic 30.0%
ATTGCATTTCATCCAATCTT+AGG - tig0007116:56298-56317 Msa1345380:intron 30.0%
! AGGAAATTTTGTCCTAAGAT+TGG + tig0007116:56313-56332 None:intergenic 30.0%
ATGTTAGGACAAAATTATCC+TGG - tig0007116:56339-56358 Msa1345380:intron 30.0%
CGAAATTTCACATCTACTAT+TGG + tig0007116:56380-56399 None:intergenic 30.0%
ATAGTAGATGTGAAATTTCG+TGG - tig0007116:56380-56399 Msa1345380:intron 30.0%
ATTGCAATTATTAGCCACTT+TGG - tig0007116:56424-56443 Msa1345380:intron 30.0%
! TTGCAATTATTAGCCACTTT+GGG - tig0007116:56425-56444 Msa1345380:intron 30.0%
!! AGAAAGTCAACATTTTGGAA+TGG + tig0007116:56461-56480 None:intergenic 30.0%
! AAGTGAGAAAGTCAACATTT+TGG + tig0007116:56466-56485 None:intergenic 30.0%
! TTACCAACTTCTGTTTTCTT+TGG - tig0007116:56494-56513 Msa1345380:intron 30.0%
ATTCCAAAGAAAACAGAAGT+TGG + tig0007116:56500-56519 None:intergenic 30.0%
!!! TTTTTTCTTATGGCCTAAGA+AGG - tig0007116:56521-56540 Msa1345380:intron 30.0%
TTAGAGCAGATTTAGATTCA+CGG - tig0007116:56732-56751 Msa1345380:intron 30.0%
! GCTTCAAAGTATAGTTTTTG+CGG + tig0007116:56762-56781 None:intergenic 30.0%
TTGAAGCTTCTATAAAACCA+AGG - tig0007116:56775-56794 Msa1345380:intron 30.0%
TTACACACACTTAAATTGGA+AGG - tig0007116:56963-56982 Msa1345380:intron 30.0%
GGTTACCTATTTCATATTCA+TGG - tig0007116:57152-57171 Msa1345380:intron 30.0%
ATAACACGACTACATCTTTA+GGG - tig0007116:57368-57387 Msa1345380:intron 30.0%
!! TATTTTTGATAGGACCAATC+TGG - tig0007116:57784-57803 Msa1345380:intron 30.0%
AATTACTAAACTCACCTTGA+GGG + tig0007116:57912-57931 None:intergenic 30.0%
AAATTACTAAACTCACCTTG+AGG + tig0007116:57913-57932 None:intergenic 30.0%
TAGACTTTGCTTTCAAAGTT+TGG - tig0007116:58029-58048 Msa1345380:intron 30.0%
TATCAAACTCTCACTTGATT+AGG - tig0007116:58216-58235 Msa1345380:intron 30.0%
ACATATAGTTGCCTAAACAT+TGG + tig0007116:58277-58296 None:intergenic 30.0%
GAATCAGAATCTAATGCATA+TGG + tig0007116:58309-58328 None:intergenic 30.0%
TAGTGAATGTTTAATCTGAG+TGG + tig0007116:58395-58414 None:intergenic 30.0%
!! GTTTAGCCTTGTAATTCTAA+GGG + tig0007116:58500-58519 None:intergenic 30.0%
!! AGTTTAGCCTTGTAATTCTA+AGG + tig0007116:58501-58520 None:intergenic 30.0%
GAGAATAAATTAGGAGTTGA+GGG + tig0007116:58640-58659 None:intergenic 30.0%
AGAGAATAAATTAGGAGTTG+AGG + tig0007116:58641-58660 None:intergenic 30.0%
GTACAATTTACATAGCAACA+AGG + tig0007116:58673-58692 None:intergenic 30.0%
TGTTGCTATGTAAATTGTAC+AGG - tig0007116:58673-58692 Msa1345380:intron 30.0%
ACTGCAGTAATCTTATTCTT+TGG + tig0007116:58745-58764 None:intergenic 30.0%
!! ACAATTACCTCTAAAACTCT+TGG - tig0007116:58812-58831 Msa1345380:intron 30.0%
AGAGTAGATATCTTTCCAAA+TGG - tig0007116:58930-58949 Msa1345380:intron 30.0%
!! TCATATGATGGATGCATTAA+TGG - tig0007116:58957-58976 Msa1345380:intron 30.0%
TGACTATAAGACATGTATGA+AGG - tig0007116:59001-59020 Msa1345380:intron 30.0%
GACTATAAGACATGTATGAA+GGG - tig0007116:59002-59021 Msa1345380:intron 30.0%
TTACTCATAATTGTGGAGAA+TGG - tig0007116:59043-59062 Msa1345380:CDS 30.0%
TACTCATAATTGTGGAGAAT+GGG - tig0007116:59044-59063 Msa1345380:CDS 30.0%
TATTACATTCGAAATGCAAC+TGG + tig0007116:59150-59169 None:intergenic 30.0%
TGTTTAACACAGGATGGAAT+GGG + tig0007116:52612-52631 None:intergenic 35.0%
AAAATTTACCTTGGTTGCCA+AGG + tig0007116:52876-52895 None:intergenic 35.0%
TAGCTAGCTATGAACTTTGT+TGG - tig0007116:53033-53052 Msa1345380:intron 35.0%
AAATAGTTTAGTACTCCCTC+CGG - tig0007116:53175-53194 Msa1345380:CDS 35.0%
CTCTATGTAATGTATACGGA+CGG + tig0007116:53528-53547 None:intergenic 35.0%
TAAGAAGGAACTAGCTCAAT+TGG - tig0007116:53650-53669 Msa1345380:intron 35.0%
!! GTTCAATTGAGTTGAACTCA+TGG - tig0007116:53678-53697 Msa1345380:intron 35.0%
CACTTATTCATCGTATGAGA+TGG - tig0007116:53805-53824 Msa1345380:intron 35.0%
TGCAATAGTAACAATTTGGG+TGG - tig0007116:54040-54059 Msa1345380:CDS 35.0%
AATAGTAACAATTTGGGTGG+TGG - tig0007116:54043-54062 Msa1345380:CDS 35.0%
ATAGTAACAATTTGGGTGGT+GGG - tig0007116:54044-54063 Msa1345380:CDS 35.0%
GATTATCAAATCATCGCCAT+TGG + tig0007116:54083-54102 None:intergenic 35.0%
! GCGATGATTTGATAATCAGT+CGG - tig0007116:54086-54105 Msa1345380:CDS 35.0%
ATCTCACCTTAATTGCGATT+TGG - tig0007116:54373-54392 Msa1345380:CDS 35.0%
ATCTTGTCTTTGTCTTTGAG+GGG - tig0007116:54405-54424 Msa1345380:CDS 35.0%
! TTTTTGGATGCATGCAATCT+TGG - tig0007116:54575-54594 Msa1345380:intron 35.0%
ATAGTTGTCTATGTTCGAGA+AGG - tig0007116:54598-54617 Msa1345380:intron 35.0%
! GCGTTGAAATTTTCTCTTCT+TGG - tig0007116:54769-54788 Msa1345380:intron 35.0%
AACAAAAAACGACTCTTGGT+TGG + tig0007116:54798-54817 None:intergenic 35.0%
CTTCAACAAAAAACGACTCT+TGG + tig0007116:54802-54821 None:intergenic 35.0%
!! CATAGAGCACGTTTTTAAAG+AGG - tig0007116:54992-55011 Msa1345380:intron 35.0%
CTATCTTTACCTACCTTGTT+TGG + tig0007116:55315-55334 None:intergenic 35.0%
CAAACAAGGTAGGTAAAGAT+AGG - tig0007116:55313-55332 Msa1345380:intron 35.0%
AAGAAAAGATAGGCTCGTAT+TGG + tig0007116:55740-55759 None:intergenic 35.0%
!! TTCCGTCTTTGAGATTATCA+AGG - tig0007116:56151-56170 Msa1345380:intron 35.0%
!! TCCGTCTTTGAGATTATCAA+GGG - tig0007116:56152-56171 Msa1345380:intron 35.0%
! TCCCTTGATAATCTCAAAGA+CGG + tig0007116:56156-56175 None:intergenic 35.0%
ATCCTTATTCCATCCTTCTT+AGG + tig0007116:56537-56556 None:intergenic 35.0%
GGATAAGATTAATGTGGAGT+AGG - tig0007116:56553-56572 Msa1345380:intron 35.0%
ATTAATGTGGAGTAGGTTGT+TGG - tig0007116:56560-56579 Msa1345380:intron 35.0%
TTAATGTGGAGTAGGTTGTT+GGG - tig0007116:56561-56580 Msa1345380:intron 35.0%
TTGTGTCACAGTGCATTTAA+AGG - tig0007116:56628-56647 Msa1345380:intron 35.0%
ATAAAATCGTAGTGATGCCT+TGG + tig0007116:56795-56814 None:intergenic 35.0%
GTTACCTAATCTACCTAAGT+TGG - tig0007116:56985-57004 Msa1345380:intron 35.0%
CTTTCCAACTTAGGTAGATT+AGG + tig0007116:56992-57011 None:intergenic 35.0%
! CTAATCTACCTAAGTTGGAA+AGG - tig0007116:56990-57009 Msa1345380:intron 35.0%
CACACCCATGAATATGAAAT+AGG + tig0007116:57160-57179 None:intergenic 35.0%
CATAACACGACTACATCTTT+AGG - tig0007116:57367-57386 Msa1345380:intron 35.0%
GAGATATTCTGCTTGTTTGA+AGG - tig0007116:57485-57504 Msa1345380:intron 35.0%
AAGGGACTTATAATAAGGGA+CGG + tig0007116:57727-57746 None:intergenic 35.0%
TGGAAAGGTTCCTCTATATT+GGG - tig0007116:57804-57823 Msa1345380:intron 35.0%
!! GATGATGCTGATTTGCTTAA+AGG - tig0007116:57859-57878 Msa1345380:intron 35.0%
GTTGCCTAAACATTGGAAAT+TGG + tig0007116:58270-58289 None:intergenic 35.0%
! TCTTGACCATTAATTTGACG+TGG - tig0007116:58367-58386 Msa1345380:intron 35.0%
! CTTGACCATTAATTTGACGT+GGG - tig0007116:58368-58387 Msa1345380:intron 35.0%
! TATTAGAACCGATTTCTTGC+CGG - tig0007116:58433-58452 Msa1345380:intron 35.0%
TGTAAACTAGTCATTAGTCC+CGG + tig0007116:58455-58474 None:intergenic 35.0%
!! TAATGACTAGTTTACAACCG+AGG - tig0007116:58459-58478 Msa1345380:intron 35.0%
TGCTAATGAGGAGGAAATTT+GGG - tig0007116:58768-58787 Msa1345380:intron 35.0%
!! AAGAGAACCAAGAGTTTTAG+AGG + tig0007116:58822-58841 None:intergenic 35.0%
ATGATGAATTAACAGGTGGA+AGG - tig0007116:58886-58905 Msa1345380:intron 35.0%
TGATGAATTAACAGGTGGAA+GGG - tig0007116:58887-58906 Msa1345380:intron 35.0%
TTGGAAAGATATCTACTCTG+TGG + tig0007116:58929-58948 None:intergenic 35.0%
CCATCATATGATACTCCATT+TGG + tig0007116:58948-58967 None:intergenic 35.0%
! CCAAATGGAGTATCATATGA+TGG - tig0007116:58945-58964 Msa1345380:intron 35.0%
TGGATGCATTAATGGAGTAA+TGG - tig0007116:58965-58984 Msa1345380:intron 35.0%
GGATGCATTAATGGAGTAAT+GGG - tig0007116:58966-58985 Msa1345380:intron 35.0%
GAAGGGACCATAATGTAAAT+AGG - tig0007116:59019-59038 Msa1345380:intron 35.0%
TAATGATCCACTTATTCACG+AGG - tig0007116:59275-59294 Msa1345380:five_prime_UTR 35.0%
GTGTTTAACACAGGATGGAA+TGG + tig0007116:52613-52632 None:intergenic 40.0%
TCCATCCTGTGTTAAACACT+AGG - tig0007116:52614-52633 Msa1345380:three_prime_UTR 40.0%
CCATCCTGTGTTAAACACTA+GGG - tig0007116:52615-52634 Msa1345380:three_prime_UTR 40.0%
TTGTCCCTAGTGTTTAACAC+AGG + tig0007116:52622-52641 None:intergenic 40.0%
TTTGCTGCTGAAAAGGTTTG+TGG - tig0007116:52776-52795 Msa1345380:three_prime_UTR 40.0%
! ATTGATGATCGCTGATCCAT+TGG - tig0007116:53072-53091 Msa1345380:intron 40.0%
TCCATTGGATCACTAACTAG+TGG - tig0007116:53087-53106 Msa1345380:intron 40.0%
TGCTTATAACAGTAACCGGA+GGG + tig0007116:53193-53212 None:intergenic 40.0%
TTGCTTATAACAGTAACCGG+AGG + tig0007116:53194-53213 None:intergenic 40.0%
GACCGAAATGAGTAGTTATG+AGG - tig0007116:53323-53342 Msa1345380:intron 40.0%
CGCCTCATAACTACTCATTT+CGG + tig0007116:53328-53347 None:intergenic 40.0%
CTGCGTGATCCTAACTTAAT+CGG - tig0007116:53731-53750 Msa1345380:intron 40.0%
! GACGTATTTTTCACTCCACT+CGG + tig0007116:53981-54000 None:intergenic 40.0%
TAGTAACAATTTGGGTGGTG+GGG - tig0007116:54045-54064 Msa1345380:CDS 40.0%
TGATAATCAGTCGGTGAAAG+AGG - tig0007116:54095-54114 Msa1345380:intron 40.0%
TTCATCTTGAGCCGATAAGA+TGG - tig0007116:54126-54145 Msa1345380:intron 40.0%
TCATCTTGAGCCGATAAGAT+GGG - tig0007116:54127-54146 Msa1345380:intron 40.0%
! AAGGTCTTTGTGTTGTTGAG+AGG - tig0007116:54203-54222 Msa1345380:CDS 40.0%
ATAGGGCCAAATCGCAATTA+AGG + tig0007116:54382-54401 None:intergenic 40.0%
! TCTTGTCTTTGTCTTTGAGG+GGG - tig0007116:54406-54425 Msa1345380:CDS 40.0%
TGAGTTTATGGGGAAGAACA+AGG - tig0007116:54960-54979 Msa1345380:intron 40.0%
! AGGAACGAAGAGCTTTAATC+AGG - tig0007116:55012-55031 Msa1345380:intron 40.0%
! GGAACGAAGAGCTTTAATCA+GGG - tig0007116:55013-55032 Msa1345380:intron 40.0%
! GAACGAAGAGCTTTAATCAG+GGG - tig0007116:55014-55033 Msa1345380:intron 40.0%
!! TTGATCCTTTGGAACGACAA+TGG + tig0007116:55056-55075 None:intergenic 40.0%
GGTAGGTAAAGATAGGTGTT+AGG - tig0007116:55320-55339 Msa1345380:intron 40.0%
GTTTCAACCTTGTCTTACGT+CGG - tig0007116:55375-55394 Msa1345380:intron 40.0%
TATGAAACCGACGTAAGACA+AGG + tig0007116:55385-55404 None:intergenic 40.0%
ACAAATTGTCGTGACGCAAA+GGG + tig0007116:55675-55694 None:intergenic 40.0%
AATTTCGTGGTCACTTCAAC+TGG - tig0007116:56393-56412 Msa1345380:intron 40.0%
ATTTCGTGGTCACTTCAACT+GGG - tig0007116:56394-56413 Msa1345380:intron 40.0%
TTCTTATGGCCTAAGAAGGA+TGG - tig0007116:56525-56544 Msa1345380:intron 40.0%
!! GCGATGATCCACCTTTATTT+TGG - tig0007116:56870-56889 Msa1345380:intron 40.0%
!! TCTACTTGGGTTAGTGAAGA+GGG + tig0007116:56921-56940 None:intergenic 40.0%
TTCACTAACCCAAGTAGAGT+TGG - tig0007116:56923-56942 Msa1345380:intron 40.0%
TAGTCTGACCAACTCTACTT+GGG + tig0007116:56934-56953 None:intergenic 40.0%
ATAGTCTGACCAACTCTACT+TGG + tig0007116:56935-56954 None:intergenic 40.0%
GACATCTACCTTTCCAACTT+AGG + tig0007116:57001-57020 None:intergenic 40.0%
GAAGGATCTCTAGACAATCT+AGG - tig0007116:57503-57522 Msa1345380:intron 40.0%
ACAACATGATTAGCAGGGTA+AGG + tig0007116:57617-57636 None:intergenic 40.0%
TACCCTGCTAATCATGTTGT+TGG - tig0007116:57617-57636 Msa1345380:intron 40.0%
GACCAACAACATGATTAGCA+GGG + tig0007116:57622-57641 None:intergenic 40.0%
TGACCAACAACATGATTAGC+AGG + tig0007116:57623-57642 None:intergenic 40.0%
CATGTTGTTGGTCATCTTAG+TGG - tig0007116:57629-57648 Msa1345380:intron 40.0%
TTGATAGGACCAATCTGGAA+AGG - tig0007116:57789-57808 Msa1345380:intron 40.0%
ATAGAGGAACCTTTCCAGAT+TGG + tig0007116:57801-57820 None:intergenic 40.0%
CTGGAAAGGTTCCTCTATAT+TGG - tig0007116:57803-57822 Msa1345380:intron 40.0%
GGAAAGGTTCCTCTATATTG+GGG - tig0007116:57805-57824 Msa1345380:intron 40.0%
GCAGTTATTCCCCAATATAG+AGG + tig0007116:57817-57836 None:intergenic 40.0%
TATTGGGGAATAACTGCTGA+TGG - tig0007116:57820-57839 Msa1345380:intron 40.0%
CAAATCAGCATCATCAGCAA+AGG + tig0007116:57854-57873 None:intergenic 40.0%
!! GATTTGCTTAAAGGTGCTTG+TGG - tig0007116:57868-57887 Msa1345380:intron 40.0%
! ATTAGAACCGATTTCTTGCC+GGG - tig0007116:58434-58453 Msa1345380:intron 40.0%
GGACGAAGTTCAAATTTCCT+CGG + tig0007116:58479-58498 None:intergenic 40.0%
CTTCGTCCCTTAGAATTACA+AGG - tig0007116:58491-58510 Msa1345380:intron 40.0%
! TGTTTCTACTCAACAGCAGT+TGG - tig0007116:58697-58716 Msa1345380:intron 40.0%
CAAATTTCCTCCTCATTAGC+AGG + tig0007116:58769-58788 None:intergenic 40.0%
CTGCTAATGAGGAGGAAATT+TGG - tig0007116:58767-58786 Msa1345380:intron 40.0%
GCTAATGAGGAGGAAATTTG+GGG - tig0007116:58769-58788 Msa1345380:intron 40.0%
! AATTTGGGGTGCAACTTTCA+AGG - tig0007116:58783-58802 Msa1345380:intron 40.0%
AACACAGGATGGAATGGGAT+GGG + tig0007116:52607-52626 None:intergenic 45.0%
TAACACAGGATGGAATGGGA+TGG + tig0007116:52608-52627 None:intergenic 45.0%
CCCTAGTGTTTAACACAGGA+TGG + tig0007116:52618-52637 None:intergenic 45.0%
TGCTGAAAAGGTTTGTGGAG+AGG - tig0007116:52781-52800 Msa1345380:three_prime_UTR 45.0%
GAAAAGGTTTGTGGAGAGGA+AGG - tig0007116:52785-52804 Msa1345380:three_prime_UTR 45.0%
! GTTGGCTTATACACACCATG+AGG - tig0007116:52845-52864 Msa1345380:three_prime_UTR 45.0%
GCCACTAGTTAGTGATCCAA+TGG + tig0007116:53091-53110 None:intergenic 45.0%
AGTCGGTGAAAGAGGAGATT+AGG - tig0007116:54103-54122 Msa1345380:intron 45.0%
CATCTTGAGCCGATAAGATG+GGG - tig0007116:54128-54147 Msa1345380:intron 45.0%
ATCTTGAGCCGATAAGATGG+GGG - tig0007116:54129-54148 Msa1345380:intron 45.0%
ATCCTTGCAAAACCGGAAAC+CGG + tig0007116:54508-54527 None:intergenic 45.0%
! TTTGGAACGACAATGGACTC+GGG + tig0007116:55049-55068 None:intergenic 45.0%
!! CTTTGGAACGACAATGGACT+CGG + tig0007116:55050-55069 None:intergenic 45.0%
GCATGACAAAGACACCTTAC+AGG + tig0007116:55644-55663 None:intergenic 45.0%
CACAAATTGTCGTGACGCAA+AGG + tig0007116:55676-55695 None:intergenic 45.0%
!! CTCGTATTGGTTGATCATGG+GGG + tig0007116:55727-55746 None:intergenic 45.0%
!! GCTCGTATTGGTTGATCATG+GGG + tig0007116:55728-55747 None:intergenic 45.0%
!! GGCTCGTATTGGTTGATCAT+GGG + tig0007116:55729-55748 None:intergenic 45.0%
!! AGGCTCGTATTGGTTGATCA+TGG + tig0007116:55730-55749 None:intergenic 45.0%
TGGTCAAAGAAAGTTGAGCC+AGG + tig0007116:56360-56379 None:intergenic 45.0%
TTTCGTGGTCACTTCAACTG+GGG - tig0007116:56395-56414 Msa1345380:intron 45.0%
GGCCTAAGAAGGATGGAATA+AGG - tig0007116:56532-56551 Msa1345380:intron 45.0%
TGAGACTGAGAAGTGAAGAG+AGG - tig0007116:56654-56673 Msa1345380:intron 45.0%
GAGACTGAGAAGTGAAGAGA+GGG - tig0007116:56655-56674 Msa1345380:intron 45.0%
!! CTCTACTTGGGTTAGTGAAG+AGG + tig0007116:56922-56941 None:intergenic 45.0%
TGTTAGGTCATTCGCTGTGA+AGG - tig0007116:57460-57479 Msa1345380:intron 45.0%
GGAAGCTTGAGACAGCAATA+TGG - tig0007116:57524-57543 Msa1345380:intron 45.0%
TCACTTGCTTCTTTCCCTCA+AGG - tig0007116:57895-57914 Msa1345380:intron 45.0%
GTGGTCCCACGTCAAATTAA+TGG + tig0007116:58376-58395 None:intergenic 45.0%
CATTAGTCCCGGCAAGAAAT+CGG + tig0007116:58444-58463 None:intergenic 45.0%
TTCTACTCAACAGCAGTTGG+AGG - tig0007116:58700-58719 Msa1345380:intron 45.0%
TCTACTCAACAGCAGTTGGA+GGG - tig0007116:58701-58720 Msa1345380:intron 45.0%
ACTGTTGCCTCGTGAATAAG+TGG + tig0007116:59285-59304 None:intergenic 45.0%
!! AAACAAAAATAATTAAAATA+TGG - tig0007116:53592-53611 Msa1345380:intron 5.0%
!!! TTTTTTTTTTTTTTTTAAGA+AGG - tig0007116:53635-53654 Msa1345380:intron 5.0%
!!! TTTTTATTTATTTGAAAAAT+AGG - tig0007116:54005-54024 Msa1345380:CDS 5.0%
!!! TTTTTAAAAATATACATTTT+TGG - tig0007116:57990-58009 Msa1345380:intron 5.0%
GGGGATATTCAGTAGCTCAG+TGG - tig0007116:52689-52708 Msa1345380:three_prime_UTR 50.0%
AGCAAATTCGCCGACGTCTT+CGG + tig0007116:52762-52781 None:intergenic 50.0%
!! CGGCGAATTTGCTGCTGAAA+AGG - tig0007116:52769-52788 Msa1345380:three_prime_UTR 50.0%
!! AACAATTTGGGTGGTGGGGT+AGG - tig0007116:54049-54068 Msa1345380:CDS 50.0%
! GCTTGCTACCCCCATCTTAT+CGG + tig0007116:54140-54159 None:intergenic 50.0%
! TGTCTTTGTCTTTGAGGGGG+TGG - tig0007116:54409-54428 Msa1345380:CDS 50.0%
ACACACCCTACCTTACAAGC+CGG - tig0007116:54486-54505 Msa1345380:intron 50.0%
!! GGAAACCGGCTTGTAAGGTA+GGG + tig0007116:54494-54513 None:intergenic 50.0%
! CTACCTTACAAGCCGGTTTC+CGG - tig0007116:54493-54512 Msa1345380:intron 50.0%
!! AAACCGGAAACCGGCTTGTA+AGG + tig0007116:54499-54518 None:intergenic 50.0%
! GACAATGGACTCGGGTACTT+AGG + tig0007116:55041-55060 None:intergenic 50.0%
CGAGTCCATTGTCGTTCCAA+AGG - tig0007116:55048-55067 Msa1345380:intron 50.0%
TAAAGGTGGATCATCGCGAG+TGG + tig0007116:56867-56886 None:intergenic 50.0%
! AGCGACAAAGAGTGTGGAAG+TGG + tig0007116:57684-57703 None:intergenic 50.0%
TACGGAAGCGACAAAGAGTG+TGG + tig0007116:57690-57709 None:intergenic 50.0%
TACTGCAGTGCCTGCTAATG+AGG - tig0007116:58756-58775 Msa1345380:intron 50.0%
TAGCTCAGTGGTGTCTCCTC+CGG - tig0007116:52701-52720 Msa1345380:three_prime_UTR 55.0%
! TCAGCTGTGTCACTGCAGGT+TGG - tig0007116:52810-52829 Msa1345380:three_prime_UTR 55.0%
! CAGCTGTGTCACTGCAGGTT+GGG - tig0007116:52811-52830 Msa1345380:three_prime_UTR 55.0%
! AGCTGTGTCACTGCAGGTTG+GGG - tig0007116:52812-52831 Msa1345380:three_prime_UTR 55.0%
CACACCATGAGGAGTCACCT+TGG - tig0007116:52856-52875 Msa1345380:three_prime_UTR 55.0%
GTTGCCAAGGTGACTCCTCA+TGG + tig0007116:52863-52882 None:intergenic 55.0%
AGGAGTCACCTTGGCAACCA+AGG - tig0007116:52865-52884 Msa1345380:three_prime_UTR 55.0%
GTTGAAGGCCCCAGAAGAGA+AGG - tig0007116:53955-53974 Msa1345380:intron 55.0%
TCCACTCGGCCTTCTCTTCT+GGG + tig0007116:53967-53986 None:intergenic 55.0%
!! ATTTGGGTGGTGGGGTAGGT+AGG - tig0007116:54053-54072 Msa1345380:CDS 55.0%
GGGGTAGGTAGGTGATCCAA+TGG - tig0007116:54064-54083 Msa1345380:CDS 55.0%
!! CGGAAACCGGCTTGTAAGGT+AGG + tig0007116:54495-54514 None:intergenic 55.0%
!! AGCCGGTTTCCGGTTTTGCA+AGG - tig0007116:54503-54522 Msa1345380:intron 55.0%
CGTGACGCAAAGGGAGACTA+TGG + tig0007116:55666-55685 None:intergenic 55.0%
TGGACAGTGCACACCCAAAG+TGG + tig0007116:56441-56460 None:intergenic 55.0%
TGGAGTAGGTTGTTGGGACC+AGG - tig0007116:56567-56586 Msa1345380:intron 55.0%
TGCAGTGCCTGCTAATGAGG+AGG - tig0007116:58759-58778 Msa1345380:intron 55.0%
TCTGTGGCTGCAAGAACTGC+TGG + tig0007116:58913-58932 None:intergenic 55.0%
ACGTCTTCGGCGACGGTGTT+CGG + tig0007116:52749-52768 None:intergenic 60.0%
AACACCGTCGCCGAAGACGT+CGG - tig0007116:52749-52768 Msa1345380:three_prime_UTR 60.0%
! GGCTTCAGCTGTGTCACTGC+AGG - tig0007116:52806-52825 Msa1345380:three_prime_UTR 60.0%
! TGTGTCACTGCAGGTTGGGG+AGG - tig0007116:52815-52834 Msa1345380:three_prime_UTR 60.0%
GGTTGGGGAGGATGTGCAGT+TGG - tig0007116:52827-52846 Msa1345380:three_prime_UTR 60.0%
CCACTCGGCCTTCTCTTCTG+GGG + tig0007116:53966-53985 None:intergenic 60.0%
CTCCACTCGGCCTTCTCTTC+TGG + tig0007116:53968-53987 None:intergenic 60.0%
CTCAGTGGTGTCTCCTCCGG+AGG - tig0007116:52704-52723 Msa1345380:three_prime_UTR 65.0%
TTCGCCGACGTCTTCGGCGA+CGG + tig0007116:52756-52775 None:intergenic 65.0%
CCCCAGAAGAGAAGGCCGAG+TGG - tig0007116:53963-53982 Msa1345380:intron 65.0%
GGTGTCTCCTCCGGAGGAGC+TGG - tig0007116:52710-52729 Msa1345380:three_prime_UTR 70.0%
GTCTCCTCCGGAGGAGCTGG+TGG - tig0007116:52713-52732 Msa1345380:three_prime_UTR 70.0%
CCAGCAGCCACCAGCTCCTC+CGG + tig0007116:52723-52742 None:intergenic 70.0%
GCAGCCACCAGCTCCTCCGG+AGG + tig0007116:52720-52739 None:intergenic 75.0%
CCGGAGGAGCTGGTGGCTGC+TGG - tig0007116:52720-52739 Msa1345380:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
tig0007116 gene 52602 59307 52602 ID=Msa1345380;Name=Msa1345380
tig0007116 mRNA 52602 59307 52602 ID=Msa1345380-mRNA-1;Parent=Msa1345380;Name=Msa1345380-mRNA-1;_AED=0.01;_eAED=0.01;_QI=82|1|1|1|1|1|5|371|236
tig0007116 exon 52602 53008 52602 ID=Msa1345380-mRNA-1:exon:4937;Parent=Msa1345380-mRNA-1
tig0007116 exon 53105 53214 53105 ID=Msa1345380-mRNA-1:exon:4936;Parent=Msa1345380-mRNA-1
tig0007116 exon 53993 54113 53993 ID=Msa1345380-mRNA-1:exon:4935;Parent=Msa1345380-mRNA-1
tig0007116 exon 54203 54443 54203 ID=Msa1345380-mRNA-1:exon:4934;Parent=Msa1345380-mRNA-1
tig0007116 exon 59023 59307 59023 ID=Msa1345380-mRNA-1:exon:4933;Parent=Msa1345380-mRNA-1
tig0007116 five_prime_UTR 59226 59307 59226 ID=Msa1345380-mRNA-1:five_prime_utr;Parent=Msa1345380-mRNA-1
tig0007116 CDS 59023 59225 59023 ID=Msa1345380-mRNA-1:cds;Parent=Msa1345380-mRNA-1
tig0007116 CDS 54203 54443 54203 ID=Msa1345380-mRNA-1:cds;Parent=Msa1345380-mRNA-1
tig0007116 CDS 53993 54113 53993 ID=Msa1345380-mRNA-1:cds;Parent=Msa1345380-mRNA-1
tig0007116 CDS 53105 53214 53105 ID=Msa1345380-mRNA-1:cds;Parent=Msa1345380-mRNA-1
tig0007116 CDS 52973 53008 52973 ID=Msa1345380-mRNA-1:cds;Parent=Msa1345380-mRNA-1
tig0007116 three_prime_UTR 52602 52972 52602 ID=Msa1345380-mRNA-1:three_prime_utr;Parent=Msa1345380-mRNA-1
Gene Sequence

>Msa1345380

ATGTTGGGGATATTCAGTAGCTCAGTGGTGTCTCCTCCGGAGGAGCTGGTGGCTGCTGGTAGCCGAACACCGTCGCCGAAGACGTCGGCGAATTTGCTGCTGAAAAGGTTTGTGGAGAGGAAGGCTTCAGCTGTGTCACTGCAGGTTGGGGAGGATGTGCAGTTGGCTTATACACACCATGAGGAGTCACCTTGGCAACCAAGGTCATTCGCTGTGAAGGATGAGATATTCTGCTTGTTTGAAGGATCTCTAGACAATCTAGGAAGCTTGAGACAGCAATATGGACTTGCAAAATCTGCCAATGAAGTAGTTCTTATGATTGAAGCTTACAAAGCTTTACGTGATCGTGCACCTTACCCTGCTAATCATGTTGTTGGTCATCTTAGTGGTAGTTTTGCTTTCATAGTTTTCGACAAATCCACTTCCACACTCTTTGTCGCTTCCGACCAATCTGGAAAGGTTCCTCTATATTGGGGAATAACTGCTGATGGATATGTAGCCTTTGCTGATGATGCTGATTTGCTTAAAGGTGCTTGTGGAAAGTCACTTGCTTCTTTCCCTCAAGGATGTTTCTACTCAACAGCAGTTGGAGGGTTAAGATGTTATGAGAATCCAAAGAATAAGATTACTGCAGTGCCTGCTAATGAGGAGGAAATTTGGGGTGCAACTTTCAAGGTGGAAGGGCCAGCAGTTCTTGCAGCCACAGAGTAG
Protein sequence

>Msa1345380

MLGIFSSSVVSPPEELVAAGSRTPSPKTSANLLLKRFVERKASAVSLQVGEDVQLAYTHHEESPWQPRSFAVKDEIFCLFEGSLDNLGSLRQQYGLAKSANEVVLMIEAYKALRDRAPYPANHVVGHLSGSFAFIVFDKSTSTLFVASDQSGKVPLYWGITADGYVAFADDADLLKGACGKSLASFPQGCFYSTAVGGLRCYENPKNKITAVPANEEEIWGATFKVEGPAVLAATE*