Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275840 | XP_013462795.1 | 91.259 | 286 | 13 | 2 | 1 | 276 | 1 | 284 | 1.10e-170 | 483 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275840 | sp|Q402F4|TOM1_TOBAC | 65.157 | 287 | 88 | 2 | 1 | 275 | 1 | 287 | 1.48e-133 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275840 | A0A072V498 | 91.259 | 286 | 13 | 2 | 1 | 276 | 1 | 284 | 5.28e-171 | 483 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0275840 | Msa0316170 | 0.960647 | 8.547464e-119 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275840 | MtrunA17_Chr2g0288191 | 91.259 | 286 | 13 | 2 | 1 | 276 | 1 | 284 | 1.02e-174 | 483 |
| Msa0275840 | MtrunA17_Chr4g0074691 | 69.466 | 262 | 70 | 1 | 25 | 276 | 17 | 278 | 2.60e-125 | 358 |
| Msa0275840 | MtrunA17_Chr4g0050391 | 56.115 | 278 | 110 | 2 | 11 | 276 | 12 | 289 | 1.26e-111 | 323 |
| Msa0275840 | MtrunA17_Chr1g0162201 | 55.474 | 274 | 110 | 2 | 15 | 276 | 24 | 297 | 1.57e-104 | 306 |
| Msa0275840 | MtrunA17_Chr8g0375261 | 52.920 | 274 | 117 | 2 | 15 | 276 | 21 | 294 | 1.12e-101 | 298 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275840 | AT4G21790.1 | 67.528 | 271 | 76 | 2 | 18 | 276 | 21 | 291 | 5.68e-133 | 378 |
| Msa0275840 | AT2G02180.1 | 54.745 | 274 | 112 | 2 | 15 | 276 | 30 | 303 | 3.62e-107 | 313 |
| Msa0275840 | AT1G14530.2 | 52.431 | 288 | 125 | 2 | 1 | 276 | 6 | 293 | 2.25e-97 | 288 |
| Msa0275840 | AT1G14530.1 | 48.498 | 233 | 108 | 2 | 1 | 221 | 6 | 238 | 6.47e-75 | 229 |
Find 73 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATAGGATTTCTAATATT+TGG | 0.124625 | 2_3:-7961619 | Msa0275840:CDS |
| CCTCCTCCGATTCATCTTCA+TGG | 0.199015 | 2_3:-7963878 | Msa0275840:CDS |
| CCAAGATGCTCTACAGTTAA+TGG | 0.201166 | 2_3:+7960526 | None:intergenic |
| CTTCTCCCCTTCGACTCAAT+TGG | 0.225125 | 2_3:+7961431 | None:intergenic |
| TTTGGATTCAGGTTGGTATT+TGG | 0.238716 | 2_3:-7961845 | Msa0275840:intron |
| TTTCACATCATGTAAGTAAA+AGG | 0.248422 | 2_3:-7960313 | Msa0275840:three_prime_UTR |
| GGATGCATCTCTTGATGTTT+TGG | 0.250674 | 2_3:-7960763 | Msa0275840:CDS |
| TTGGTGCTGTTAGATCTTCC+TGG | 0.284142 | 2_3:-7962643 | Msa0275840:CDS |
| GCGGAAAGTGTTACAGAAAA+TGG | 0.287187 | 2_3:-7963934 | Msa0275840:exon |
| TGAGTAGTCCAACCATATTC+AGG | 0.302915 | 2_3:+7963741 | None:intergenic |
| AATCCCATGAAATTTGAAAA+TGG | 0.306371 | 2_3:+7960205 | None:intergenic |
| TTCATTGGAAAGATATTTAT+AGG | 0.306665 | 2_3:-7961786 | Msa0275840:CDS |
| GAACTTAGAGTACCTGAATA+TGG | 0.316772 | 2_3:-7963753 | Msa0275840:CDS |
| ATAGTTTACATCTCTGTAAA+TGG | 0.340354 | 2_3:-7962356 | Msa0275840:CDS |
| TCAGCAGTTGCTGCTCGGTT+AGG | 0.360171 | 2_3:-7960384 | Msa0275840:three_prime_UTR |
| TAGTAGATGAAGTCCAAAAT+AGG | 0.369339 | 2_3:+7960735 | None:intergenic |
| AATGATGTTGTGGACTTCAT+TGG | 0.374030 | 2_3:-7961801 | Msa0275840:CDS |
| TTTAATGGCGCTGCAGTTCA+TGG | 0.375212 | 2_3:-7960470 | Msa0275840:three_prime_UTR |
| TTCTCCCCTTCGACTCAATT+GGG | 0.391195 | 2_3:+7961432 | None:intergenic |
| GTATCATTTGTAGCTGCAAT+AGG | 0.392978 | 2_3:-7961634 | Msa0275840:CDS |
| GCAGTACGTGCTCTTGTGTT+TGG | 0.396156 | 2_3:-7963553 | Msa0275840:intron |
| TCTTGTATCTGCAGTTGATT+CGG | 0.410575 | 2_3:-7960784 | Msa0275840:CDS |
| CAGCAGTTGCTGCTCGGTTA+GGG | 0.414023 | 2_3:-7960383 | Msa0275840:three_prime_UTR |
| CATAGATCTTATCAGAAAAC+AGG | 0.416104 | 2_3:+7961152 | None:intergenic |
| TTGGTATTTGGATTTACCTC+TGG | 0.418748 | 2_3:-7961833 | Msa0275840:CDS |
| GTAAAAGGAGCAAGGATTGA+GGG | 0.423945 | 2_3:-7960298 | Msa0275840:three_prime_UTR |
| ATGTGTAAATTACAAATAGA+TGG | 0.428860 | 2_3:-7960178 | Msa0275840:three_prime_UTR |
| TGGTGCTGTTAGATCTTCCT+GGG | 0.430050 | 2_3:-7962642 | Msa0275840:CDS |
| TATTGAGTTGATATTCTCTT+CGG | 0.451424 | 2_3:+7960558 | None:intergenic |
| CTGCTTGAGAATATACTTGA+TGG | 0.463844 | 2_3:+7960429 | None:intergenic |
| CCATTAACTGTAGAGCATCT+TGG | 0.464462 | 2_3:-7960526 | Msa0275840:exon |
| CACAGAGAGTGTAGAAAAGT+GGG | 0.475634 | 2_3:+7963826 | None:intergenic |
| GTGAAACCATGAAGATGAAT+CGG | 0.486743 | 2_3:+7963872 | None:intergenic |
| GAGTTGAATAAGAGCAATGA+AGG | 0.494346 | 2_3:+7963785 | None:intergenic |
| GATTTCTAATATTTGGAGGA+AGG | 0.500607 | 2_3:-7961612 | Msa0275840:intron |
| GTAGAAAAGTGGGGAGTGAG+TGG | 0.511615 | 2_3:+7963836 | None:intergenic |
| AGTAAAAGGAGCAAGGATTG+AGG | 0.513487 | 2_3:-7960299 | Msa0275840:three_prime_UTR |
| GCACAGAGAGTGTAGAAAAG+TGG | 0.523675 | 2_3:+7963825 | None:intergenic |
| GATTGAGGGAAGTTCATTGA+GGG | 0.528468 | 2_3:-7960284 | Msa0275840:three_prime_UTR |
| TGCTGATTATCACACATGTA+AGG | 0.530767 | 2_3:+7960401 | None:intergenic |
| GCGTTTCCCAATTGAGTCGA+AGG | 0.541700 | 2_3:-7961438 | Msa0275840:CDS |
| TCTTCGGTGGCAATTTGCGT+AGG | 0.542095 | 2_3:+7960574 | None:intergenic |
| TTTGGACTTCATCTACTACA+TGG | 0.542851 | 2_3:-7960730 | Msa0275840:intron |
| TGAGTTGATATTCTCTTCGG+TGG | 0.546195 | 2_3:+7960561 | None:intergenic |
| GTTTACCAACTGATAAGCTC+AGG | 0.551142 | 2_3:-7962379 | Msa0275840:CDS |
| ATAGGATTTCTAATATTTGG+AGG | 0.559894 | 2_3:-7961616 | Msa0275840:CDS |
| TGGTGCTGTCTATTTAATCC+AGG | 0.560182 | 2_3:-7962336 | Msa0275840:intron |
| TTAGAGTACCTGAATATGGT+TGG | 0.563767 | 2_3:-7963749 | Msa0275840:CDS |
| GGATTGAGGGAAGTTCATTG+AGG | 0.565409 | 2_3:-7960285 | Msa0275840:three_prime_UTR |
| CGTTTCCCAATTGAGTCGAA+GGG | 0.580317 | 2_3:-7961437 | Msa0275840:CDS |
| GCCATTAAAATAATAACCGA+CGG | 0.588828 | 2_3:+7960484 | None:intergenic |
| ATTGGAAAGATATTTATAGG+AGG | 0.589271 | 2_3:-7961783 | Msa0275840:intron |
| GATAATCAGCAGTTGCTGCT+CGG | 0.591290 | 2_3:-7960389 | Msa0275840:three_prime_UTR |
| CCATGAAGATGAATCGGAGG+AGG | 0.591453 | 2_3:+7963878 | None:intergenic |
| GCAATTTGCGTAGGATGAAG+AGG | 0.595166 | 2_3:+7960583 | None:intergenic |
| CCATTAAAATAATAACCGAC+GGG | 0.604946 | 2_3:+7960485 | None:intergenic |
| GTTAGATTACAATGATGTTG+TGG | 0.605926 | 2_3:-7961811 | Msa0275840:CDS |
| TTACTGTATTCTTCACCCGT+CGG | 0.609725 | 2_3:-7960500 | Msa0275840:three_prime_UTR |
| AGAGGACTATAGCTGAAGGC+AGG | 0.610867 | 2_3:+7960601 | None:intergenic |
| TGCTTGAGAATATACTTGAT+GGG | 0.615437 | 2_3:+7960430 | None:intergenic |
| TCATGTAAGTAAAAGGAGCA+AGG | 0.617131 | 2_3:-7960306 | Msa0275840:three_prime_UTR |
| AGATGAAGTCCAAAATAGGA+TGG | 0.617784 | 2_3:+7960739 | None:intergenic |
| TGTAAATTACAAATAGATGG+AGG | 0.623062 | 2_3:-7960175 | Msa0275840:three_prime_UTR |
| ATGAAGAGGACTATAGCTGA+AGG | 0.637421 | 2_3:+7960597 | None:intergenic |
| ACTATCCTGAGCTTATCAGT+TGG | 0.646966 | 2_3:+7962374 | None:intergenic |
| AAACCATGAAGATGAATCGG+AGG | 0.647701 | 2_3:+7963875 | None:intergenic |
| GAGAAGAAAGAAGCTGCAAG+AGG | 0.662827 | 2_3:-7961414 | Msa0275840:intron |
| ATATACTTGATGGGCAAGAG+CGG | 0.663347 | 2_3:+7960439 | None:intergenic |
| ATTGAGGGAAGTTCATTGAG+GGG | 0.671328 | 2_3:-7960283 | Msa0275840:three_prime_UTR |
| GTTTCCCAATTGAGTCGAAG+GGG | 0.679602 | 2_3:-7961436 | Msa0275840:CDS |
| CATCATTGTAATCTAACCAG+AGG | 0.684919 | 2_3:+7961817 | None:intergenic |
| ACAGAGAGTGTAGAAAAGTG+GGG | 0.694273 | 2_3:+7963827 | None:intergenic |
| AGTGAGTGGAATCTGTGACA+AGG | 0.749614 | 2_3:+7963850 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATT+TGG | - | chr2_3:7960451-7960470 | Msa0275840:three_prime_UTR | 0.0% |
| !!! | AATGAATTTTATAAGAAAAA+CGG | - | chr2_3:7960766-7960785 | Msa0275840:CDS | 10.0% |
| !! | TTATGTTTATATACAATTCA+CGG | - | chr2_3:7960680-7960699 | Msa0275840:intron | 15.0% |
| !!! | ATGAATTTTATAAGAAAAAC+GGG | - | chr2_3:7960767-7960786 | Msa0275840:CDS | 15.0% |
| !!! | GTTTAAAGTAAAATGATTTA+TGG | - | chr2_3:7961004-7961023 | Msa0275840:intron | 15.0% |
| !!! | GTTATTTTTGTAAATATGTT+GGG | - | chr2_3:7962974-7962993 | Msa0275840:intron | 15.0% |
| !! | GATTAAATTTAATATATGTG+AGG | - | chr2_3:7963179-7963198 | Msa0275840:intron | 15.0% |
| !!! | TATAGAAATTTTTGTGATAT+AGG | - | chr2_3:7963786-7963805 | Msa0275840:CDS | 15.0% |
| !! | TATGTTTATATACAATTCAC+GGG | - | chr2_3:7960681-7960700 | Msa0275840:intron | 20.0% |
| !!! | TGAATTTTATAAGAAAAACG+GGG | - | chr2_3:7960768-7960787 | Msa0275840:CDS | 20.0% |
| !! | AAAGTAAAATGATTTATGGT+TGG | - | chr2_3:7961008-7961027 | Msa0275840:intron | 20.0% |
| !!! | CACAAATAAACTAGTTTTAA+AGG | + | chr2_3:7961507-7961526 | None:intergenic | 20.0% |
| !! | TTCATTGGAAAGATATTTAT+AGG | - | chr2_3:7962252-7962271 | Msa0275840:intron | 20.0% |
| !! | TATACCAATGTAATGTTTAA+AGG | + | chr2_3:7962338-7962357 | None:intergenic | 20.0% |
| !!! | AATTTTTTTTTATTTCCTCC+CGG | - | chr2_3:7962543-7962562 | Msa0275840:intron | 20.0% |
| !! | AATGTATAATTATCTACATC+TGG | + | chr2_3:7962778-7962797 | None:intergenic | 20.0% |
| !!! | CGTTATTTTTGTAAATATGT+TGG | - | chr2_3:7962973-7962992 | Msa0275840:intron | 20.0% |
| !!! | ATTGTTTTTCTTTTTTTGCT+TGG | - | chr2_3:7963003-7963022 | Msa0275840:intron | 20.0% |
| !!! | TTTCCATTTTCAAATTTCAT+GGG | - | chr2_3:7963830-7963849 | Msa0275840:CDS | 20.0% |
| !! | ATGTGTAAATTACAAATAGA+TGG | - | chr2_3:7963860-7963879 | Msa0275840:CDS | 20.0% |
| ! | AAACTAGAATTTGTAACCTT+TGG | + | chr2_3:7960739-7960758 | None:intergenic | 25.0% |
| !! | GAATTTTATAAGAAAAACGG+GGG | - | chr2_3:7960769-7960788 | Msa0275840:CDS | 25.0% |
| !!! | TAAACTAGTTTTAAAGGACA+AGG | + | chr2_3:7961501-7961520 | None:intergenic | 25.0% |
| !!! | TTTTTATTTCATGATTGAGC+AGG | - | chr2_3:7961630-7961649 | Msa0275840:CDS | 25.0% |
| ! | ATAGTTTACATCTCTGTAAA+TGG | - | chr2_3:7961682-7961701 | Msa0275840:intron | 25.0% |
| ! | TAGATTGCAAGAATATAGTT+AGG | + | chr2_3:7961863-7961882 | None:intergenic | 25.0% |
| !!! | ACTTAAAAGTGTCAAATTTG+CGG | + | chr2_3:7961939-7961958 | None:intergenic | 25.0% |
| ! | ATTATGGCACAAAAATTTCT+AGG | - | chr2_3:7961983-7962002 | Msa0275840:intron | 25.0% |
| !! | ATGGAATTCAATATCTGTTT+TGG | - | chr2_3:7962067-7962086 | Msa0275840:intron | 25.0% |
| !! | TGGAATTCAATATCTGTTTT+GGG | - | chr2_3:7962068-7962087 | Msa0275840:intron | 25.0% |
| ! | ATTGGAAAGATATTTATAGG+AGG | - | chr2_3:7962255-7962274 | Msa0275840:intron | 25.0% |
| !!! | AATCTACTTTACTTTTCTTC+AGG | - | chr2_3:7962380-7962399 | Msa0275840:CDS | 25.0% |
| ! | GCAATAGGATTTCTAATATT+TGG | - | chr2_3:7962419-7962438 | Msa0275840:intron | 25.0% |
| ! | ATAGGATTTCTAATATTTGG+AGG | - | chr2_3:7962422-7962441 | Msa0275840:intron | 25.0% |
| ! | AGTTTGATAAAACTTTCTGA+GGG | - | chr2_3:7962675-7962694 | Msa0275840:intron | 25.0% |
| !!! | GTTCTTTTTATTTCACAATG+AGG | + | chr2_3:7962730-7962749 | None:intergenic | 25.0% |
| ! | TAGTTATACTCACATAAACT+CGG | - | chr2_3:7962822-7962841 | Msa0275840:intron | 25.0% |
| !! | TTTTCTGATAAGATCTATGA+TGG | - | chr2_3:7962890-7962909 | Msa0275840:intron | 25.0% |
| ! | AAATTGCAAACAAAATCTCA+AGG | - | chr2_3:7963157-7963176 | Msa0275840:intron | 25.0% |
| !!! | TATTGAGTTGATATTCTCTT+CGG | + | chr2_3:7963483-7963502 | None:intergenic | 25.0% |
| ! | TTTCACATCATGTAAGTAAA+AGG | - | chr2_3:7963725-7963744 | Msa0275840:CDS | 25.0% |
| !! | CTTTCCATTTTCAAATTTCA+TGG | - | chr2_3:7963829-7963848 | Msa0275840:CDS | 25.0% |
| ! | AATCCCATGAAATTTGAAAA+TGG | + | chr2_3:7963836-7963855 | None:intergenic | 25.0% |
| ! | TGTAAATTACAAATAGATGG+AGG | - | chr2_3:7963863-7963882 | Msa0275840:CDS | 25.0% |
| !!! | GTAACATTTTAACTCAAACA+AGG | + | chr2_3:7963914-7963933 | None:intergenic | 25.0% |
| !!! | GTTCACTCTCTTTGTTTTTA+TGG | - | chr2_3:7960363-7960382 | Msa0275840:three_prime_UTR | 30.0% |
| CAAAAGTGAAAACTAACCTT+AGG | + | chr2_3:7960539-7960558 | None:intergenic | 30.0% | |
| TGGTTTACACTCAAATCTAT+TGG | + | chr2_3:7960719-7960738 | None:intergenic | 30.0% | |
| TAGATTTGAGTGTAAACCAA+AGG | - | chr2_3:7960720-7960739 | Msa0275840:intron | 30.0% | |
| CATGAAGGAGAAAATACTAA+AGG | - | chr2_3:7960856-7960875 | Msa0275840:intron | 30.0% | |
| ! | GTTTGACTTTGAATATACTG+TGG | - | chr2_3:7960942-7960961 | Msa0275840:intron | 30.0% |
| TTGAGTGTAAAAATCGTGTT+TGG | - | chr2_3:7961065-7961084 | Msa0275840:intron | 30.0% | |
| ! | TGAAGACTGCAAATTGATTT+CGG | + | chr2_3:7961173-7961192 | None:intergenic | 30.0% |
| !! | TTTGATTTGACTCTCTTGAA+AGG | - | chr2_3:7961201-7961220 | Msa0275840:intron | 30.0% |
| ! | TTGATTTGACTCTCTTGAAA+GGG | - | chr2_3:7961202-7961221 | Msa0275840:intron | 30.0% |
| !!! | CAATGGTTACTTTTTCATGT+AGG | - | chr2_3:7961364-7961383 | Msa0275840:intron | 30.0% |
| !!! | TTTCATGTAGGTTTTGACTT+TGG | - | chr2_3:7961376-7961395 | Msa0275840:intron | 30.0% |
| ! | ATACACTTCTTGTTCTTTTC+TGG | - | chr2_3:7961438-7961457 | Msa0275840:CDS | 30.0% |
| ! | TACACTTCTTGTTCTTTTCT+GGG | - | chr2_3:7961439-7961458 | Msa0275840:CDS | 30.0% |
| ! | ATTCGCTTCATTTTGTATGT+TGG | - | chr2_3:7961774-7961793 | Msa0275840:intron | 30.0% |
| ATGTATTGGAATAAACACCA+AGG | + | chr2_3:7961804-7961823 | None:intergenic | 30.0% | |
| AAGGGATATTCATCATGTAT+TGG | + | chr2_3:7961818-7961837 | None:intergenic | 30.0% | |
| !! | ACTTTTAAGTGAAGATCTTC+TGG | - | chr2_3:7961949-7961968 | Msa0275840:intron | 30.0% |
| TCTGGTGTATGAAATGATTA+TGG | - | chr2_3:7961967-7961986 | Msa0275840:intron | 30.0% | |
| CCAACACTATCAATTCATAT+TGG | + | chr2_3:7962031-7962050 | None:intergenic | 30.0% | |
| !! | CCAATATGAATTGATAGTGT+TGG | - | chr2_3:7962028-7962047 | Msa0275840:intron | 30.0% |
| ! | TGGAAGTGGTATTTAAGATA+TGG | - | chr2_3:7962048-7962067 | Msa0275840:intron | 30.0% |
| AGTATCACAATACTAAACTG+TGG | - | chr2_3:7962169-7962188 | Msa0275840:intron | 30.0% | |
| GTTAGATTACAATGATGTTG+TGG | - | chr2_3:7962227-7962246 | Msa0275840:intron | 30.0% | |
| GCAACCTTTAAACATTACAT+TGG | - | chr2_3:7962331-7962350 | Msa0275840:intron | 30.0% | |
| !! | TTTCATGAAAAAAGTGCCTA+TGG | + | chr2_3:7962362-7962381 | None:intergenic | 30.0% |
| GATTTCTAATATTTGGAGGA+AGG | - | chr2_3:7962426-7962445 | Msa0275840:intron | 30.0% | |
| CAAAATTGAGGAATTGCAAA+AGG | + | chr2_3:7962489-7962508 | None:intergenic | 30.0% | |
| CCACTGAATAAACAAAATTG+AGG | + | chr2_3:7962501-7962520 | None:intergenic | 30.0% | |
| !! | CCTCAATTTTGTTTATTCAG+TGG | - | chr2_3:7962498-7962517 | Msa0275840:intron | 30.0% |
| CTTCAGCATGAAAAATAATC+TGG | + | chr2_3:7962581-7962600 | None:intergenic | 30.0% | |
| CAGTTTGATAAAACTTTCTG+AGG | - | chr2_3:7962674-7962693 | Msa0275840:intron | 30.0% | |
| CATAGATCTTATCAGAAAAC+AGG | + | chr2_3:7962889-7962908 | None:intergenic | 30.0% | |
| TTGCAAGTTGCTTCAATTAA+GGG | + | chr2_3:7963071-7963090 | None:intergenic | 30.0% | |
| !! | GATTTTGTTTGCAATTTCTC+CGG | + | chr2_3:7963154-7963173 | None:intergenic | 30.0% |
| TTACATTATGTTACACATGC+AGG | - | chr2_3:7963230-7963249 | Msa0275840:intron | 30.0% | |
| TAGTAGATGAAGTCCAAAAT+AGG | + | chr2_3:7963306-7963325 | None:intergenic | 30.0% | |
| !!! | TACTTCGTGTTCTTTTTTGT+TGG | - | chr2_3:7963336-7963355 | Msa0275840:intron | 30.0% |
| !! | ACCTGTATTTTAAAAGCGAA+GGG | + | chr2_3:7963408-7963427 | None:intergenic | 30.0% |
| CCATTAAAATAATAACCGAC+GGG | + | chr2_3:7963556-7963575 | None:intergenic | 30.0% | |
| GCCATTAAAATAATAACCGA+CGG | + | chr2_3:7963557-7963576 | None:intergenic | 30.0% | |
| TGCTTGAGAATATACTTGAT+GGG | + | chr2_3:7963611-7963630 | None:intergenic | 30.0% | |
| GTGAAACCATGAAGATGAAT+CGG | + | chr2_3:7960169-7960188 | None:intergenic | 35.0% | |
| GAGTTGAATAAGAGCAATGA+AGG | + | chr2_3:7960256-7960275 | None:intergenic | 35.0% | |
| ! | GAACTTAGAGTACCTGAATA+TGG | - | chr2_3:7960285-7960304 | Msa0275840:three_prime_UTR | 35.0% |
| ! | TTAGAGTACCTGAATATGGT+TGG | - | chr2_3:7960289-7960308 | Msa0275840:three_prime_UTR | 35.0% |
| !! | CTCTTCAACTTCGTTTTTAG+TGG | - | chr2_3:7960333-7960352 | Msa0275840:three_prime_UTR | 35.0% |
| !!! | TTCAACTTCGTTTTTAGTGG+AGG | - | chr2_3:7960336-7960355 | Msa0275840:three_prime_UTR | 35.0% |
| ! | AGTGTTTTTCTTGCATCCTA+AGG | - | chr2_3:7960520-7960539 | Msa0275840:three_prime_UTR | 35.0% |
| TTATAAGAAAAACGGGGGTT+TGG | - | chr2_3:7960774-7960793 | Msa0275840:CDS | 35.0% | |
| AGTCTGAACTAAGGGTTTAA+AGG | - | chr2_3:7960807-7960826 | Msa0275840:intron | 35.0% | |
| AACTAAGGGTTTAAAGGAGT+TGG | - | chr2_3:7960813-7960832 | Msa0275840:intron | 35.0% | |
| GGAGAAAATACTAAAGGAGT+TGG | - | chr2_3:7960862-7960881 | Msa0275840:intron | 35.0% | |
| TTATGGTTGGATGTGTTTGT+AGG | - | chr2_3:7961021-7961040 | Msa0275840:intron | 35.0% | |
| AGTGTAAAAATCGTGTTTGG+AGG | - | chr2_3:7961068-7961087 | Msa0275840:intron | 35.0% | |
| ! | ATACTTGACTTTTGTGTGTG+TGG | - | chr2_3:7961260-7961279 | Msa0275840:intron | 35.0% |
| !! | TCACTTAGATTTGCTGAGAT+TGG | - | chr2_3:7961309-7961328 | Msa0275840:intron | 35.0% |
| AAAGCAAAAAAAGACATGCC+TGG | + | chr2_3:7961478-7961497 | None:intergenic | 35.0% | |
| TATAATCACTTTCCACTAGC+TGG | + | chr2_3:7961549-7961568 | None:intergenic | 35.0% | |
| ! | AACATTTTGTCATCACACGA+AGG | + | chr2_3:7961574-7961593 | None:intergenic | 35.0% |
| CAAGAAATGAGATAGATACC+TGG | + | chr2_3:7961723-7961742 | None:intergenic | 35.0% | |
| ! | TTTTGTATGTTGGATCTCCT+TGG | - | chr2_3:7961784-7961803 | Msa0275840:CDS | 35.0% |
| GATGAATATCCCTTTCAGTT+TGG | - | chr2_3:7961824-7961843 | Msa0275840:CDS | 35.0% | |
| GCAAGAATATAGTTAGGTGA+AGG | + | chr2_3:7961857-7961876 | None:intergenic | 35.0% | |
| !! | TGAATTGATAGTGTTGGAAG+TGG | - | chr2_3:7962034-7962053 | Msa0275840:intron | 35.0% |
| !!! | TCTGTTTTGGGTTGTAATTG+TGG | - | chr2_3:7962080-7962099 | Msa0275840:intron | 35.0% |
| ACAATACTAAACTGTGGCTT+TGG | - | chr2_3:7962175-7962194 | Msa0275840:intron | 35.0% | |
| !! | TTTGGATTCAGGTTGGTATT+TGG | - | chr2_3:7962193-7962212 | Msa0275840:intron | 35.0% |
| TTGGTATTTGGATTTACCTC+TGG | - | chr2_3:7962205-7962224 | Msa0275840:intron | 35.0% | |
| CATCATTGTAATCTAACCAG+AGG | + | chr2_3:7962224-7962243 | None:intergenic | 35.0% | |
| AATGATGTTGTGGACTTCAT+TGG | - | chr2_3:7962237-7962256 | Msa0275840:intron | 35.0% | |
| CATTACATTGGTATAGCCAT+AGG | - | chr2_3:7962343-7962362 | Msa0275840:CDS | 35.0% | |
| GTATCATTTGTAGCTGCAAT+AGG | - | chr2_3:7962404-7962423 | Msa0275840:intron | 35.0% | |
| GTGAGAATTCTACAGTTGAT+TGG | - | chr2_3:7962448-7962467 | Msa0275840:intron | 35.0% | |
| GTTTATTCAGTGGTTGTTCT+TGG | - | chr2_3:7962508-7962527 | Msa0275840:intron | 35.0% | |
| AATCTGGAAACACGAATTAC+CGG | + | chr2_3:7962565-7962584 | None:intergenic | 35.0% | |
| ! | TTCTGAGGGAAAAACATTCT+AGG | - | chr2_3:7962689-7962708 | Msa0275840:intron | 35.0% |
| ATACTCACATAAACTCGGTT+TGG | - | chr2_3:7962827-7962846 | Msa0275840:intron | 35.0% | |
| !! | TAAACTCGGTTTGGTATTAC+AGG | - | chr2_3:7962836-7962855 | Msa0275840:intron | 35.0% |
| CTTGCAAGTTGCTTCAATTA+AGG | + | chr2_3:7963072-7963091 | None:intergenic | 35.0% | |
| ATTGAGATCGACATACTCAT+TGG | - | chr2_3:7963100-7963119 | Msa0275840:intron | 35.0% | |
| TTGAGATCGACATACTCATT+GGG | - | chr2_3:7963101-7963120 | Msa0275840:intron | 35.0% | |
| CTTAGTACTTGTCAATTGTC+CGG | - | chr2_3:7963132-7963151 | Msa0275840:intron | 35.0% | |
| TCTTGTATCTGCAGTTGATT+CGG | - | chr2_3:7963254-7963273 | Msa0275840:intron | 35.0% | |
| !! | TGTTTTGGACCATCCTATTT+TGG | - | chr2_3:7963290-7963309 | Msa0275840:intron | 35.0% |
| AGATGAAGTCCAAAATAGGA+TGG | + | chr2_3:7963302-7963321 | None:intergenic | 35.0% | |
| TTTGGACTTCATCTACTACA+TGG | - | chr2_3:7963308-7963327 | Msa0275840:intron | 35.0% | |
| !!! | ACCCTTCGCTTTTAAAATAC+AGG | - | chr2_3:7963404-7963423 | Msa0275840:intron | 35.0% |
| !! | CACCTGTATTTTAAAAGCGA+AGG | + | chr2_3:7963409-7963428 | None:intergenic | 35.0% |
| !!! | CTTCGCTTTTAAAATACAGG+TGG | - | chr2_3:7963407-7963426 | Msa0275840:intron | 35.0% |
| !!! | CCCGTCGGTTATTATTTTAA+TGG | - | chr2_3:7963553-7963572 | Msa0275840:intron | 35.0% |
| CTGCTTGAGAATATACTTGA+TGG | + | chr2_3:7963612-7963631 | None:intergenic | 35.0% | |
| ! | TGCTGATTATCACACATGTA+AGG | + | chr2_3:7963640-7963659 | None:intergenic | 35.0% |
| TCATGTAAGTAAAAGGAGCA+AGG | - | chr2_3:7963732-7963751 | Msa0275840:CDS | 35.0% | |
| !! | GCGGAAAGTGTTACAGAAAA+TGG | - | chr2_3:7960104-7960123 | Msa0275840:three_prime_UTR | 40.0% |
| AAACCATGAAGATGAATCGG+AGG | + | chr2_3:7960166-7960185 | None:intergenic | 40.0% | |
| ! | ACAGAGAGTGTAGAAAAGTG+GGG | + | chr2_3:7960214-7960233 | None:intergenic | 40.0% |
| ! | CACAGAGAGTGTAGAAAAGT+GGG | + | chr2_3:7960215-7960234 | None:intergenic | 40.0% |
| TGAGTAGTCCAACCATATTC+AGG | + | chr2_3:7960300-7960319 | None:intergenic | 40.0% | |
| ! | AGCTCAACTAGTCTGAACTA+AGG | - | chr2_3:7960798-7960817 | Msa0275840:intron | 40.0% |
| ! | GCTCAACTAGTCTGAACTAA+GGG | - | chr2_3:7960799-7960818 | Msa0275840:intron | 40.0% |
| TAAGGGTTTAAAGGAGTTGG+AGG | - | chr2_3:7960816-7960835 | Msa0275840:intron | 40.0% | |
| AAGGGTTTAAAGGAGTTGGA+GGG | - | chr2_3:7960817-7960836 | Msa0275840:intron | 40.0% | |
| TCGATTGTTCAGCTTCACTT+TGG | - | chr2_3:7960889-7960908 | Msa0275840:intron | 40.0% | |
| TTCACTTTGGACTACTAGAG+TGG | - | chr2_3:7960902-7960921 | Msa0275840:intron | 40.0% | |
| GTGTTTGTAGGAAAGTGAGT+TGG | - | chr2_3:7961033-7961052 | Msa0275840:intron | 40.0% | |
| ! | ACTGCAAATTGATTTCGGTC+TGG | + | chr2_3:7961168-7961187 | None:intergenic | 40.0% |
| AAAGGGAATTTGAACGTGCA+TGG | - | chr2_3:7961219-7961238 | Msa0275840:intron | 40.0% | |
| GCTTGAATACTGACATGCAA+TGG | - | chr2_3:7961347-7961366 | Msa0275840:intron | 40.0% | |
| GAATGAAATGAACCAGCTAG+TGG | - | chr2_3:7961534-7961553 | Msa0275840:intron | 40.0% | |
| ATTTCATGATTGAGCAGGCA+AGG | - | chr2_3:7961635-7961654 | Msa0275840:CDS | 40.0% | |
| GTTTACCAACTGATAAGCTC+AGG | - | chr2_3:7961659-7961678 | Msa0275840:intron | 40.0% | |
| ACTATCCTGAGCTTATCAGT+TGG | + | chr2_3:7961667-7961686 | None:intergenic | 40.0% | |
| !! | TGGTGCTGTCTATTTAATCC+AGG | - | chr2_3:7961702-7961721 | Msa0275840:intron | 40.0% |
| GGTTGAACTCCAAACTGAAA+GGG | + | chr2_3:7961836-7961855 | None:intergenic | 40.0% | |
| AGGTTGAACTCCAAACTGAA+AGG | + | chr2_3:7961837-7961856 | None:intergenic | 40.0% | |
| !! | TAAACTGTGGCTTTGGATTC+AGG | - | chr2_3:7962182-7962201 | Msa0275840:intron | 40.0% |
| ATCTGGAAACACGAATTACC+GGG | + | chr2_3:7962564-7962583 | None:intergenic | 40.0% | |
| ATTGAAGCAACTTGCAAGAG+AGG | - | chr2_3:7963074-7963093 | Msa0275840:intron | 40.0% | |
| TTGAAGCAACTTGCAAGAGA+GGG | - | chr2_3:7963075-7963094 | Msa0275840:intron | 40.0% | |
| TGAGATCGACATACTCATTG+GGG | - | chr2_3:7963102-7963121 | Msa0275840:intron | 40.0% | |
| ! | GGATGCATCTCTTGATGTTT+TGG | - | chr2_3:7963275-7963294 | Msa0275840:intron | 40.0% |
| ! | GTTGGTTGCCCTAACAATTT+TGG | - | chr2_3:7963354-7963373 | Msa0275840:intron | 40.0% |
| GAGCGACACCAAAATTGTTA+GGG | + | chr2_3:7963365-7963384 | None:intergenic | 40.0% | |
| AGAGCGACACCAAAATTGTT+AGG | + | chr2_3:7963366-7963385 | None:intergenic | 40.0% | |
| ATGAAGAGGACTATAGCTGA+AGG | + | chr2_3:7963444-7963463 | None:intergenic | 40.0% | |
| !! | TGAGTTGATATTCTCTTCGG+TGG | + | chr2_3:7963480-7963499 | None:intergenic | 40.0% |
| CCAAGATGCTCTACAGTTAA+TGG | + | chr2_3:7963515-7963534 | None:intergenic | 40.0% | |
| ! | CCATTAACTGTAGAGCATCT+TGG | - | chr2_3:7963512-7963531 | Msa0275840:intron | 40.0% |
| TTACTGTATTCTTCACCCGT+CGG | - | chr2_3:7963538-7963557 | Msa0275840:CDS | 40.0% | |
| ! | ATATACTTGATGGGCAAGAG+CGG | + | chr2_3:7963602-7963621 | None:intergenic | 40.0% |
| AGTAAAAGGAGCAAGGATTG+AGG | - | chr2_3:7963739-7963758 | Msa0275840:CDS | 40.0% | |
| GTAAAAGGAGCAAGGATTGA+GGG | - | chr2_3:7963740-7963759 | Msa0275840:CDS | 40.0% | |
| GATTGAGGGAAGTTCATTGA+GGG | - | chr2_3:7963754-7963773 | Msa0275840:CDS | 40.0% | |
| ATTGAGGGAAGTTCATTGAG+GGG | - | chr2_3:7963755-7963774 | Msa0275840:CDS | 40.0% | |
| AGTGAGTGGAATCTGTGACA+AGG | + | chr2_3:7960191-7960210 | None:intergenic | 45.0% | |
| ! | GCACAGAGAGTGTAGAAAAG+TGG | + | chr2_3:7960216-7960235 | None:intergenic | 45.0% |
| !!! | CTTCGTTTTTAGTGGAGGTG+AGG | - | chr2_3:7960341-7960360 | Msa0275840:three_prime_UTR | 45.0% |
| CTTCATGAGAGTTTGAGCAC+CGG | + | chr2_3:7960843-7960862 | None:intergenic | 45.0% | |
| ! | ATTGATTTCGGTCTGGTTGC+TGG | + | chr2_3:7961161-7961180 | None:intergenic | 45.0% |
| !! | CGTGCATGGTTTGCTTGTTT+AGG | - | chr2_3:7961233-7961252 | Msa0275840:intron | 45.0% |
| !! | TTGGTGCTGTTAGATCTTCC+TGG | - | chr2_3:7961395-7961414 | Msa0275840:intron | 45.0% |
| !! | TGGTGCTGTTAGATCTTCCT+GGG | - | chr2_3:7961396-7961415 | Msa0275840:intron | 45.0% |
| GTTGAGAAAAACACAAGCCC+AGG | + | chr2_3:7961416-7961435 | None:intergenic | 45.0% | |
| CTGGGCTGAAATTTATCACC+AGG | - | chr2_3:7961457-7961476 | Msa0275840:CDS | 45.0% | |
| CGTTTCCCAATTGAGTCGAA+GGG | - | chr2_3:7962601-7962620 | Msa0275840:intron | 45.0% | |
| GTTTCCCAATTGAGTCGAAG+GGG | - | chr2_3:7962602-7962621 | Msa0275840:intron | 45.0% | |
| TTCTCCCCTTCGACTCAATT+GGG | + | chr2_3:7962609-7962628 | None:intergenic | 45.0% | |
| GAGAAGAAAGAAGCTGCAAG+AGG | - | chr2_3:7962624-7962643 | Msa0275840:CDS | 45.0% | |
| !! | CTCGGTTTGGTATTACAGGT+TGG | - | chr2_3:7962840-7962859 | Msa0275840:intron | 45.0% |
| ATCGACATACTCATTGGGGA+GGG | - | chr2_3:7963106-7963125 | Msa0275840:intron | 45.0% | |
| ! | GTGTCGCTCTCTTAACATAG+TGG | - | chr2_3:7963376-7963395 | Msa0275840:intron | 45.0% |
| GCAATTTGCGTAGGATGAAG+AGG | + | chr2_3:7963458-7963477 | None:intergenic | 45.0% | |
| TTTAATGGCGCTGCAGTTCA+TGG | - | chr2_3:7963568-7963587 | Msa0275840:intron | 45.0% | |
| GATAATCAGCAGTTGCTGCT+CGG | - | chr2_3:7963649-7963668 | Msa0275840:intron | 45.0% | |
| GGATTGAGGGAAGTTCATTG+AGG | - | chr2_3:7963753-7963772 | Msa0275840:CDS | 45.0% | |
| CCATGAAGATGAATCGGAGG+AGG | + | chr2_3:7960163-7960182 | None:intergenic | 50.0% | |
| CCTCCTCCGATTCATCTTCA+TGG | - | chr2_3:7960160-7960179 | Msa0275840:three_prime_UTR | 50.0% | |
| GTAGAAAAGTGGGGAGTGAG+TGG | + | chr2_3:7960205-7960224 | None:intergenic | 50.0% | |
| GCAGTACGTGCTCTTGTGTT+TGG | - | chr2_3:7960485-7960504 | Msa0275840:three_prime_UTR | 50.0% | |
| GTTTAAAGGAGTTGGAGGGC+CGG | - | chr2_3:7960821-7960840 | Msa0275840:intron | 50.0% | |
| CGGTGCTCAAACTCTCATGA+AGG | - | chr2_3:7960841-7960860 | Msa0275840:intron | 50.0% | |
| !! | CTGTGGCTTTGGATTCAGGT+TGG | - | chr2_3:7962186-7962205 | Msa0275840:intron | 50.0% |
| TGGAAACACGAATTACCGGG+AGG | + | chr2_3:7962561-7962580 | None:intergenic | 50.0% | |
| GCGTTTCCCAATTGAGTCGA+AGG | - | chr2_3:7962600-7962619 | Msa0275840:intron | 50.0% | |
| CTTCTCCCCTTCGACTCAAT+TGG | + | chr2_3:7962610-7962629 | None:intergenic | 50.0% | |
| GATCGACATACTCATTGGGG+AGG | - | chr2_3:7963105-7963124 | Msa0275840:intron | 50.0% | |
| TCGACATACTCATTGGGGAG+GGG | - | chr2_3:7963107-7963126 | Msa0275840:intron | 50.0% | |
| AGAGGACTATAGCTGAAGGC+AGG | + | chr2_3:7963440-7963459 | None:intergenic | 50.0% | |
| TCTTCGGTGGCAATTTGCGT+AGG | + | chr2_3:7963467-7963486 | None:intergenic | 50.0% | |
| CGACATACTCATTGGGGAGG+GGG | - | chr2_3:7963108-7963127 | Msa0275840:intron | 55.0% | |
| TCAGCAGTTGCTGCTCGGTT+AGG | - | chr2_3:7963654-7963673 | Msa0275840:intron | 55.0% | |
| CAGCAGTTGCTGCTCGGTTA+GGG | - | chr2_3:7963655-7963674 | Msa0275840:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 7960104 | 7963956 | 7960104 | ID=Msa0275840;Name=Msa0275840 |
| chr2_3 | mRNA | 7960104 | 7963956 | 7960104 | ID=Msa0275840-mRNA-1;Parent=Msa0275840;Name=Msa0275840-mRNA-1;_AED=0.16;_eAED=0.16;_QI=19|0.88|0.9|1|0.66|0.8|10|438|276 |
| chr2_3 | exon | 7960104 | 7960634 | 7960104 | ID=Msa0275840-mRNA-1:exon:3647;Parent=Msa0275840-mRNA-1 |
| chr2_3 | exon | 7960731 | 7960808 | 7960731 | ID=Msa0275840-mRNA-1:exon:3646;Parent=Msa0275840-mRNA-1 |
| chr2_3 | exon | 7961149 | 7961202 | 7961149 | ID=Msa0275840-mRNA-1:exon:3645;Parent=Msa0275840-mRNA-1 |
| chr2_3 | exon | 7961415 | 7961478 | 7961415 | ID=Msa0275840-mRNA-1:exon:3644;Parent=Msa0275840-mRNA-1 |
| chr2_3 | exon | 7961613 | 7961658 | 7961613 | ID=Msa0275840-mRNA-1:exon:3643;Parent=Msa0275840-mRNA-1 |
| chr2_3 | exon | 7961784 | 7961856 | 7961784 | ID=Msa0275840-mRNA-1:exon:3642;Parent=Msa0275840-mRNA-1 |
| chr2_3 | exon | 7962337 | 7962408 | 7962337 | ID=Msa0275840-mRNA-1:exon:3641;Parent=Msa0275840-mRNA-1 |
| chr2_3 | exon | 7962612 | 7962674 | 7962612 | ID=Msa0275840-mRNA-1:exon:3640;Parent=Msa0275840-mRNA-1 |
| chr2_3 | exon | 7963519 | 7963571 | 7963519 | ID=Msa0275840-mRNA-1:exon:3639;Parent=Msa0275840-mRNA-1 |
| chr2_3 | exon | 7963703 | 7963956 | 7963703 | ID=Msa0275840-mRNA-1:exon:3638;Parent=Msa0275840-mRNA-1 |
| chr2_3 | five_prime_UTR | 7963938 | 7963956 | 7963938 | ID=Msa0275840-mRNA-1:five_prime_utr;Parent=Msa0275840-mRNA-1 |
| chr2_3 | CDS | 7963703 | 7963937 | 7963703 | ID=Msa0275840-mRNA-1:cds;Parent=Msa0275840-mRNA-1 |
| chr2_3 | CDS | 7963519 | 7963571 | 7963519 | ID=Msa0275840-mRNA-1:cds;Parent=Msa0275840-mRNA-1 |
| chr2_3 | CDS | 7962612 | 7962674 | 7962612 | ID=Msa0275840-mRNA-1:cds;Parent=Msa0275840-mRNA-1 |
| chr2_3 | CDS | 7962337 | 7962408 | 7962337 | ID=Msa0275840-mRNA-1:cds;Parent=Msa0275840-mRNA-1 |
| chr2_3 | CDS | 7961784 | 7961856 | 7961784 | ID=Msa0275840-mRNA-1:cds;Parent=Msa0275840-mRNA-1 |
| chr2_3 | CDS | 7961613 | 7961658 | 7961613 | ID=Msa0275840-mRNA-1:cds;Parent=Msa0275840-mRNA-1 |
| chr2_3 | CDS | 7961415 | 7961478 | 7961415 | ID=Msa0275840-mRNA-1:cds;Parent=Msa0275840-mRNA-1 |
| chr2_3 | CDS | 7961149 | 7961202 | 7961149 | ID=Msa0275840-mRNA-1:cds;Parent=Msa0275840-mRNA-1 |
| chr2_3 | CDS | 7960731 | 7960808 | 7960731 | ID=Msa0275840-mRNA-1:cds;Parent=Msa0275840-mRNA-1 |
| chr2_3 | CDS | 7960542 | 7960634 | 7960542 | ID=Msa0275840-mRNA-1:cds;Parent=Msa0275840-mRNA-1 |
| chr2_3 | three_prime_UTR | 7960104 | 7960541 | 7960104 | ID=Msa0275840-mRNA-1:three_prime_utr;Parent=Msa0275840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
