Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316170 | XP_013462795.1 | 91.608 | 286 | 12 | 2 | 1 | 276 | 1 | 284 | 7.78e-172 | 486 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316170 | sp|Q402F4|TOM1_TOBAC | 65.157 | 287 | 88 | 2 | 1 | 275 | 1 | 287 | 1.77e-133 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0275840 | Msa0316170 | 0.960647 | 8.547464e-119 | -8.615850e-47 |
| Msa0316170 | Msa0625100 | 0.805696 | 1.178439e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316170 | MtrunA17_Chr2g0288191 | 91.608 | 286 | 12 | 2 | 1 | 276 | 1 | 284 | 7.15e-176 | 486 |
| Msa0316170 | MtrunA17_Chr4g0074691 | 69.466 | 262 | 70 | 1 | 25 | 276 | 17 | 278 | 1.96e-125 | 358 |
| Msa0316170 | MtrunA17_Chr4g0050391 | 56.115 | 278 | 110 | 2 | 11 | 276 | 12 | 289 | 1.68e-111 | 323 |
| Msa0316170 | MtrunA17_Chr1g0162201 | 55.474 | 274 | 110 | 2 | 15 | 276 | 24 | 297 | 1.53e-104 | 306 |
| Msa0316170 | MtrunA17_Chr8g0375261 | 52.920 | 274 | 117 | 2 | 15 | 276 | 21 | 294 | 1.09e-101 | 298 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316170 | AT4G21790.1 | 67.528 | 271 | 76 | 2 | 18 | 276 | 21 | 291 | 3.14e-133 | 379 |
| Msa0316170 | AT2G02180.1 | 54.745 | 274 | 112 | 2 | 15 | 276 | 30 | 303 | 4.41e-107 | 313 |
| Msa0316170 | AT1G14530.2 | 52.431 | 288 | 125 | 2 | 1 | 276 | 6 | 293 | 2.59e-97 | 288 |
| Msa0316170 | AT1G14530.1 | 48.498 | 233 | 108 | 2 | 1 | 221 | 6 | 238 | 6.98e-75 | 229 |
Find 73 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATAGGATTTCTAATATT+TGG | 0.124625 | 2_4:-13070702 | Msa0316170:CDS |
| CCTCCTCCGATTCATCTTCA+TGG | 0.199015 | 2_4:-13072939 | Msa0316170:CDS |
| CCAAGATGCTCTACAGTTAA+TGG | 0.201166 | 2_4:+13069611 | None:intergenic |
| CTTCTCCCCTTCGACTCAAT+TGG | 0.225125 | 2_4:+13070514 | None:intergenic |
| TTTGGATTCAGGTTGGTATT+TGG | 0.238716 | 2_4:-13070928 | Msa0316170:intron |
| TTTCACATCATGTAAGTAAA+AGG | 0.248422 | 2_4:-13069398 | Msa0316170:three_prime_UTR |
| GGATGCATCTCTTGATGTTT+TGG | 0.250674 | 2_4:-13069848 | Msa0316170:CDS |
| TTGGTGCTGTTAGATCTTCC+TGG | 0.284142 | 2_4:-13071724 | Msa0316170:CDS |
| GCGGAAAGTGTTACAGAAAA+TGG | 0.287187 | 2_4:-13072995 | Msa0316170:exon |
| TGAGTAGTCCAACCATATTC+AGG | 0.302915 | 2_4:+13072802 | None:intergenic |
| AATCCCATGAAATTTGAAAA+TGG | 0.306371 | 2_4:+13069290 | None:intergenic |
| TTCATTGGAAAGATATTTAT+AGG | 0.306665 | 2_4:-13070869 | Msa0316170:CDS |
| GAACTTAGAGTACCTGAATA+TGG | 0.316772 | 2_4:-13072814 | Msa0316170:CDS |
| ATAGTTTACATCTCTGTAAA+TGG | 0.340354 | 2_4:-13071439 | Msa0316170:CDS |
| TCAGCAGTTGCTGCTCGGTT+AGG | 0.360171 | 2_4:-13069469 | Msa0316170:three_prime_UTR |
| TAGTAGATGAAGTCCAAAAT+AGG | 0.369339 | 2_4:+13069820 | None:intergenic |
| AATGATGTTGTGGACTTCAT+TGG | 0.374030 | 2_4:-13070884 | Msa0316170:CDS |
| TTTAATGGCGCTGCAGTTCA+TGG | 0.375212 | 2_4:-13069555 | Msa0316170:three_prime_UTR |
| TTCTCCCCTTCGACTCAATT+GGG | 0.391195 | 2_4:+13070515 | None:intergenic |
| GTATCATTTGTAGCTGCAAT+AGG | 0.392978 | 2_4:-13070717 | Msa0316170:CDS |
| GCAGTACGTGCTCTTGTGTT+TGG | 0.396156 | 2_4:-13072634 | Msa0316170:intron |
| TCTTGTATCTGCAGTTGATT+CGG | 0.410575 | 2_4:-13069869 | Msa0316170:CDS |
| CAGCAGTTGCTGCTCGGTTA+GGG | 0.414023 | 2_4:-13069468 | Msa0316170:three_prime_UTR |
| CATAGATCTTATCAGAAAAC+AGG | 0.416104 | 2_4:+13070237 | None:intergenic |
| TTGGTATTTGGATTTACCTC+TGG | 0.418748 | 2_4:-13070916 | Msa0316170:CDS |
| GTAAAAGGAGCAAGGATTGA+GGG | 0.423945 | 2_4:-13069383 | Msa0316170:three_prime_UTR |
| ATGTGTAAATTACAAATAGA+TGG | 0.428860 | 2_4:-13069263 | Msa0316170:three_prime_UTR |
| TGGTGCTGTTAGATCTTCCT+GGG | 0.430050 | 2_4:-13071723 | Msa0316170:CDS |
| TATTGAGTTGATATTCTCTT+CGG | 0.451424 | 2_4:+13069643 | None:intergenic |
| CTGCTTGAGAATATACTTGA+TGG | 0.463844 | 2_4:+13069514 | None:intergenic |
| CCATTAACTGTAGAGCATCT+TGG | 0.464462 | 2_4:-13069611 | Msa0316170:exon |
| CACAGAGAGTGTAGAAAAGT+GGG | 0.475634 | 2_4:+13072887 | None:intergenic |
| GTGAAACCATGAAGATGAAT+CGG | 0.486743 | 2_4:+13072933 | None:intergenic |
| GAGTTGAATAAGAGCAATGA+AGG | 0.494346 | 2_4:+13072846 | None:intergenic |
| GATTTCTAATATTTGGAGGA+AGG | 0.500607 | 2_4:-13070695 | Msa0316170:intron |
| GTAGAAAAGTGGGGAGTGAG+TGG | 0.511615 | 2_4:+13072897 | None:intergenic |
| AGTAAAAGGAGCAAGGATTG+AGG | 0.513487 | 2_4:-13069384 | Msa0316170:three_prime_UTR |
| GCACAGAGAGTGTAGAAAAG+TGG | 0.523675 | 2_4:+13072886 | None:intergenic |
| GATTGAGGGAAGTTCATTGA+GGG | 0.528468 | 2_4:-13069369 | Msa0316170:three_prime_UTR |
| TGCTGATTATCACACATGTA+AGG | 0.530767 | 2_4:+13069486 | None:intergenic |
| GCGTTTCCCAATTGAGTCGA+AGG | 0.541700 | 2_4:-13070521 | Msa0316170:CDS |
| TCTTCGGTGGCAATTTGCGT+AGG | 0.542095 | 2_4:+13069659 | None:intergenic |
| TTTGGACTTCATCTACTACA+TGG | 0.542851 | 2_4:-13069815 | Msa0316170:intron |
| TGAGTTGATATTCTCTTCGG+TGG | 0.546195 | 2_4:+13069646 | None:intergenic |
| GTTTACCAACTGATAAGCTC+AGG | 0.551142 | 2_4:-13071462 | Msa0316170:CDS |
| ATAGGATTTCTAATATTTGG+AGG | 0.559894 | 2_4:-13070699 | Msa0316170:CDS |
| TGGTGCTGTCTATTTAATCC+AGG | 0.560182 | 2_4:-13071419 | Msa0316170:intron |
| TTAGAGTACCTGAATATGGT+TGG | 0.563767 | 2_4:-13072810 | Msa0316170:CDS |
| GGATTGAGGGAAGTTCATTG+AGG | 0.565409 | 2_4:-13069370 | Msa0316170:three_prime_UTR |
| CGTTTCCCAATTGAGTCGAA+GGG | 0.580317 | 2_4:-13070520 | Msa0316170:CDS |
| GCCATTAAAATAATAACCGA+CGG | 0.588828 | 2_4:+13069569 | None:intergenic |
| ATTGGAAAGATATTTATAGG+AGG | 0.589271 | 2_4:-13070866 | Msa0316170:intron |
| GATAATCAGCAGTTGCTGCT+CGG | 0.591290 | 2_4:-13069474 | Msa0316170:three_prime_UTR |
| CCATGAAGATGAATCGGAGG+AGG | 0.591453 | 2_4:+13072939 | None:intergenic |
| GCAATTTGCGTAGGATGAAG+AGG | 0.595166 | 2_4:+13069668 | None:intergenic |
| CCATTAAAATAATAACCGAC+GGG | 0.604946 | 2_4:+13069570 | None:intergenic |
| GTTAGATTACAATGATGTTG+TGG | 0.605926 | 2_4:-13070894 | Msa0316170:CDS |
| TTACTGTATTCTTCACCCGT+CGG | 0.609725 | 2_4:-13069585 | Msa0316170:three_prime_UTR |
| AGAGGACTATAGCTGAAGGC+AGG | 0.610867 | 2_4:+13069686 | None:intergenic |
| TGCTTGAGAATATACTTGAT+GGG | 0.615437 | 2_4:+13069515 | None:intergenic |
| TCATGTAAGTAAAAGGAGCA+AGG | 0.617131 | 2_4:-13069391 | Msa0316170:three_prime_UTR |
| AGATGAAGTCCAAAATAGGA+TGG | 0.617784 | 2_4:+13069824 | None:intergenic |
| TGTAAATTACAAATAGATGG+AGG | 0.623062 | 2_4:-13069260 | Msa0316170:three_prime_UTR |
| ATGAAGAGGACTATAGCTGA+AGG | 0.637421 | 2_4:+13069682 | None:intergenic |
| ACTATCCTGAGCTTATCAGT+TGG | 0.646966 | 2_4:+13071457 | None:intergenic |
| AAACCATGAAGATGAATCGG+AGG | 0.647701 | 2_4:+13072936 | None:intergenic |
| GAGAAGAAAGAAGCTGCAAG+AGG | 0.662827 | 2_4:-13070497 | Msa0316170:intron |
| ATATACTTGATGGGCAAGAG+CGG | 0.663347 | 2_4:+13069524 | None:intergenic |
| ATTGAGGGAAGTTCATTGAG+GGG | 0.671328 | 2_4:-13069368 | Msa0316170:three_prime_UTR |
| GTTTCCCAATTGAGTCGAAG+GGG | 0.679602 | 2_4:-13070519 | Msa0316170:CDS |
| CATCATTGTAATCTAACCAG+AGG | 0.684919 | 2_4:+13070900 | None:intergenic |
| ACAGAGAGTGTAGAAAAGTG+GGG | 0.694273 | 2_4:+13072888 | None:intergenic |
| AGTGAGTGGAATCTGTGACA+AGG | 0.749614 | 2_4:+13072911 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATT+TGG | - | chr2_4:13069516-13069535 | Msa0316170:three_prime_UTR | 0.0% |
| !!! | AATGAATTTTATAAGAAAAA+CGG | - | chr2_4:13069831-13069850 | Msa0316170:CDS | 10.0% |
| !! | TTATGTTTATATACAATTCA+CGG | - | chr2_4:13069745-13069764 | Msa0316170:intron | 15.0% |
| !!! | ATGAATTTTATAAGAAAAAC+GGG | - | chr2_4:13069832-13069851 | Msa0316170:CDS | 15.0% |
| !!! | GTTTAAAGTAAAATGATTTA+TGG | - | chr2_4:13070069-13070088 | Msa0316170:intron | 15.0% |
| !!! | GTTATTTTTGTAAATATGTT+AGG | - | chr2_4:13072035-13072054 | Msa0316170:intron | 15.0% |
| !! | GATTAAATTTAATATATGTG+AGG | - | chr2_4:13072240-13072259 | Msa0316170:intron | 15.0% |
| !!! | TATAGAAATTTTTGTGATAT+AGG | - | chr2_4:13072847-13072866 | Msa0316170:CDS | 15.0% |
| !! | TATGTTTATATACAATTCAC+GGG | - | chr2_4:13069746-13069765 | Msa0316170:intron | 20.0% |
| !!! | AAACTAGAATTTGTAACTTT+TGG | + | chr2_4:13069804-13069823 | None:intergenic | 20.0% |
| !!! | TGAATTTTATAAGAAAAACG+GGG | - | chr2_4:13069833-13069852 | Msa0316170:CDS | 20.0% |
| !! | AAAGTAAAATGATTTATGGT+TGG | - | chr2_4:13070073-13070092 | Msa0316170:intron | 20.0% |
| !!! | CACAAATAAACTAGTTTTAA+AGG | + | chr2_4:13070572-13070591 | None:intergenic | 20.0% |
| !! | TTCATTGGAAAGATATTTAT+AGG | - | chr2_4:13071315-13071334 | Msa0316170:intron | 20.0% |
| !! | TATACCAATGTAATGTTTAA+AGG | + | chr2_4:13071401-13071420 | None:intergenic | 20.0% |
| !!! | AATTTTTTTTTATTTCCTCC+CGG | - | chr2_4:13071606-13071625 | Msa0316170:intron | 20.0% |
| !! | AATGTATAATTATCTACATC+TGG | + | chr2_4:13071841-13071860 | None:intergenic | 20.0% |
| !!! | ATTGTTTTTCTTTTTTTGCT+TGG | - | chr2_4:13072064-13072083 | Msa0316170:intron | 20.0% |
| !!! | TTTCCATTTTCAAATTTCAT+GGG | - | chr2_4:13072891-13072910 | Msa0316170:CDS | 20.0% |
| !! | ATGTGTAAATTACAAATAGA+TGG | - | chr2_4:13072921-13072940 | Msa0316170:CDS | 20.0% |
| !! | GAATTTTATAAGAAAAACGG+GGG | - | chr2_4:13069834-13069853 | Msa0316170:CDS | 25.0% |
| !!! | TTTGATTTGACTCTCTTAAA+AGG | - | chr2_4:13070266-13070285 | Msa0316170:CDS | 25.0% |
| !! | TTGATTTGACTCTCTTAAAA+GGG | - | chr2_4:13070267-13070286 | Msa0316170:CDS | 25.0% |
| !!! | TAAACTAGTTTTAAAGGACA+AGG | + | chr2_4:13070566-13070585 | None:intergenic | 25.0% |
| !!! | TTTTTATTTCATGATTGAGC+AGG | - | chr2_4:13070693-13070712 | Msa0316170:intron | 25.0% |
| ! | ATAGTTTACATCTCTGTAAA+TGG | - | chr2_4:13070745-13070764 | Msa0316170:intron | 25.0% |
| ! | TAGATTGCAAGAATATAGTT+AGG | + | chr2_4:13070926-13070945 | None:intergenic | 25.0% |
| !!! | ACTTAAAAGTGTCAAATTTG+CGG | + | chr2_4:13071002-13071021 | None:intergenic | 25.0% |
| ! | ATTATGGCACAAAAATTTCT+AGG | - | chr2_4:13071046-13071065 | Msa0316170:intron | 25.0% |
| !! | ATGGAATTCAATATCTGTTT+TGG | - | chr2_4:13071130-13071149 | Msa0316170:intron | 25.0% |
| !! | TGGAATTCAATATCTGTTTT+GGG | - | chr2_4:13071131-13071150 | Msa0316170:intron | 25.0% |
| ! | ATTGGAAAGATATTTATAGG+AGG | - | chr2_4:13071318-13071337 | Msa0316170:intron | 25.0% |
| !!! | AATCTACTTTACTTTTCTTC+AGG | - | chr2_4:13071443-13071462 | Msa0316170:CDS | 25.0% |
| ! | GCAATAGGATTTCTAATATT+TGG | - | chr2_4:13071482-13071501 | Msa0316170:intron | 25.0% |
| ! | ATAGGATTTCTAATATTTGG+AGG | - | chr2_4:13071485-13071504 | Msa0316170:intron | 25.0% |
| ! | AGTTTGATAAAACTTTCTGA+GGG | - | chr2_4:13071738-13071757 | Msa0316170:intron | 25.0% |
| !!! | GTTCTTTTTATTTCACAATG+AGG | + | chr2_4:13071793-13071812 | None:intergenic | 25.0% |
| ! | TTATACTCACATAAACTGTT+TGG | - | chr2_4:13071888-13071907 | Msa0316170:intron | 25.0% |
| !! | TTTTCTGATAAGATCTATGA+TGG | - | chr2_4:13071951-13071970 | Msa0316170:intron | 25.0% |
| ! | AAATTGCAAACAAAATCTCA+AGG | - | chr2_4:13072218-13072237 | Msa0316170:intron | 25.0% |
| !!! | TATTGAGTTGATATTCTCTT+CGG | + | chr2_4:13072544-13072563 | None:intergenic | 25.0% |
| ! | TTTCACATCATGTAAGTAAA+AGG | - | chr2_4:13072786-13072805 | Msa0316170:CDS | 25.0% |
| !! | CTTTCCATTTTCAAATTTCA+TGG | - | chr2_4:13072890-13072909 | Msa0316170:CDS | 25.0% |
| ! | AATCCCATGAAATTTGAAAA+TGG | + | chr2_4:13072897-13072916 | None:intergenic | 25.0% |
| ! | TGTAAATTACAAATAGATGG+AGG | - | chr2_4:13072924-13072943 | Msa0316170:CDS | 25.0% |
| !!! | GTAACATTTTAACTCAAACA+AGG | + | chr2_4:13072975-13072994 | None:intergenic | 25.0% |
| !!! | GTTCACTCTCTTTGTTTTTA+TGG | - | chr2_4:13069448-13069467 | Msa0316170:three_prime_UTR | 30.0% |
| CAAAAGTGAAAACTAACCTT+AGG | + | chr2_4:13069604-13069623 | None:intergenic | 30.0% | |
| CATGAAGGAGAAAATACTAA+AGG | - | chr2_4:13069921-13069940 | Msa0316170:intron | 30.0% | |
| ! | GTTTGACTTTGAATATACTG+TGG | - | chr2_4:13070007-13070026 | Msa0316170:intron | 30.0% |
| TTGAGTGTAAAAATCGTGTT+TGG | - | chr2_4:13070130-13070149 | Msa0316170:intron | 30.0% | |
| ! | TGAAGACTGCAAATTGATTT+CGG | + | chr2_4:13070238-13070257 | None:intergenic | 30.0% |
| !!! | CAATGGTTACTTTTTCATGT+AGG | - | chr2_4:13070429-13070448 | Msa0316170:intron | 30.0% |
| !!! | TTTCATGTAGGTTTTGACTT+TGG | - | chr2_4:13070441-13070460 | Msa0316170:intron | 30.0% |
| ! | ATACACTTCTTGTTCTTTTC+TGG | - | chr2_4:13070503-13070522 | Msa0316170:CDS | 30.0% |
| ! | TACACTTCTTGTTCTTTTCT+GGG | - | chr2_4:13070504-13070523 | Msa0316170:CDS | 30.0% |
| ! | ATTCGCTTCATTTTGTATGT+TGG | - | chr2_4:13070837-13070856 | Msa0316170:intron | 30.0% |
| ATGTATTGGAATAAACACCA+AGG | + | chr2_4:13070867-13070886 | None:intergenic | 30.0% | |
| AAGGGATATTCATCATGTAT+TGG | + | chr2_4:13070881-13070900 | None:intergenic | 30.0% | |
| !! | ACTTTTAAGTGAAGATCTTC+TGG | - | chr2_4:13071012-13071031 | Msa0316170:intron | 30.0% |
| TCTGGTGTATGAAATGATTA+TGG | - | chr2_4:13071030-13071049 | Msa0316170:intron | 30.0% | |
| CCAACACTATCAATTCATAT+TGG | + | chr2_4:13071094-13071113 | None:intergenic | 30.0% | |
| !! | CCAATATGAATTGATAGTGT+TGG | - | chr2_4:13071091-13071110 | Msa0316170:intron | 30.0% |
| ! | TGGAAGTGGTATTTAAGATA+TGG | - | chr2_4:13071111-13071130 | Msa0316170:intron | 30.0% |
| AGTATCACAATACTAAACTG+TGG | - | chr2_4:13071232-13071251 | Msa0316170:intron | 30.0% | |
| GTTAGATTACAATGATGTTG+TGG | - | chr2_4:13071290-13071309 | Msa0316170:intron | 30.0% | |
| GCAACCTTTAAACATTACAT+TGG | - | chr2_4:13071394-13071413 | Msa0316170:intron | 30.0% | |
| !! | TTTCATGAAAAAAGTGCCTA+TGG | + | chr2_4:13071425-13071444 | None:intergenic | 30.0% |
| GATTTCTAATATTTGGAGGA+AGG | - | chr2_4:13071489-13071508 | Msa0316170:intron | 30.0% | |
| CAAAATTGAGGAATTGCAAA+AGG | + | chr2_4:13071552-13071571 | None:intergenic | 30.0% | |
| CCACTGAATAAACAAAATTG+AGG | + | chr2_4:13071564-13071583 | None:intergenic | 30.0% | |
| !! | CCTCAATTTTGTTTATTCAG+TGG | - | chr2_4:13071561-13071580 | Msa0316170:intron | 30.0% |
| CTTCAGCATGAAAAATAATC+TGG | + | chr2_4:13071644-13071663 | None:intergenic | 30.0% | |
| CAGTTTGATAAAACTTTCTG+AGG | - | chr2_4:13071737-13071756 | Msa0316170:intron | 30.0% | |
| CATAAACTGTTTGGTATTAC+AGG | - | chr2_4:13071897-13071916 | Msa0316170:intron | 30.0% | |
| CATAGATCTTATCAGAAAAC+AGG | + | chr2_4:13071950-13071969 | None:intergenic | 30.0% | |
| TTGCAAGTTGCTTCAATTAA+GGG | + | chr2_4:13072132-13072151 | None:intergenic | 30.0% | |
| !! | GATTTTGTTTGCAATTTCTC+CGG | + | chr2_4:13072215-13072234 | None:intergenic | 30.0% |
| ! | TTACATTTTGTTACACATGC+AGG | - | chr2_4:13072291-13072310 | Msa0316170:intron | 30.0% |
| TAGTAGATGAAGTCCAAAAT+AGG | + | chr2_4:13072367-13072386 | None:intergenic | 30.0% | |
| !!! | TACTTCGTGTTCTTTTTTGT+TGG | - | chr2_4:13072397-13072416 | Msa0316170:intron | 30.0% |
| !! | ACCTGTATTTTAAAAGCGAA+GGG | + | chr2_4:13072469-13072488 | None:intergenic | 30.0% |
| CCATTAAAATAATAACCGAC+GGG | + | chr2_4:13072617-13072636 | None:intergenic | 30.0% | |
| GCCATTAAAATAATAACCGA+CGG | + | chr2_4:13072618-13072637 | None:intergenic | 30.0% | |
| TGCTTGAGAATATACTTGAT+GGG | + | chr2_4:13072672-13072691 | None:intergenic | 30.0% | |
| GTGAAACCATGAAGATGAAT+CGG | + | chr2_4:13069254-13069273 | None:intergenic | 35.0% | |
| GAGTTGAATAAGAGCAATGA+AGG | + | chr2_4:13069341-13069360 | None:intergenic | 35.0% | |
| ! | GAACTTAGAGTACCTGAATA+TGG | - | chr2_4:13069370-13069389 | Msa0316170:three_prime_UTR | 35.0% |
| ! | TTAGAGTACCTGAATATGGT+TGG | - | chr2_4:13069374-13069393 | Msa0316170:three_prime_UTR | 35.0% |
| !! | CTCTTCAACTTCGTTTTTAG+TGG | - | chr2_4:13069418-13069437 | Msa0316170:three_prime_UTR | 35.0% |
| !!! | TTCAACTTCGTTTTTAGTGG+AGG | - | chr2_4:13069421-13069440 | Msa0316170:three_prime_UTR | 35.0% |
| ! | AGTGTTTTTCTTGCATCCTA+AGG | - | chr2_4:13069585-13069604 | Msa0316170:three_prime_UTR | 35.0% |
| TGGTTTACACTCAAATCTAC+TGG | + | chr2_4:13069784-13069803 | None:intergenic | 35.0% | |
| TTATAAGAAAAACGGGGGTT+TGG | - | chr2_4:13069839-13069858 | Msa0316170:CDS | 35.0% | |
| AGTCTGAACTAAGGGTTTAA+AGG | - | chr2_4:13069872-13069891 | Msa0316170:CDS | 35.0% | |
| AACTAAGGGTTTAAAGGAGT+TGG | - | chr2_4:13069878-13069897 | Msa0316170:intron | 35.0% | |
| GGAGAAAATACTAAAGGAGT+TGG | - | chr2_4:13069927-13069946 | Msa0316170:intron | 35.0% | |
| TTATGGTTGGATGTGTTTGT+AGG | - | chr2_4:13070086-13070105 | Msa0316170:intron | 35.0% | |
| AGTGTAAAAATCGTGTTTGG+AGG | - | chr2_4:13070133-13070152 | Msa0316170:intron | 35.0% | |
| ! | ATACTTGACTTTTGTGTGTG+TGG | - | chr2_4:13070325-13070344 | Msa0316170:intron | 35.0% |
| !! | TCACTTAGATTTGCTGAGAT+TGG | - | chr2_4:13070374-13070393 | Msa0316170:intron | 35.0% |
| AAAGCAAAAAAAGACATGCC+TGG | + | chr2_4:13070543-13070562 | None:intergenic | 35.0% | |
| TATAATCACTTTCCACTAGC+TGG | + | chr2_4:13070614-13070633 | None:intergenic | 35.0% | |
| CAAGAAATGAGATAGATACC+TGG | + | chr2_4:13070786-13070805 | None:intergenic | 35.0% | |
| ! | TTTTGTATGTTGGATCTCCT+TGG | - | chr2_4:13070847-13070866 | Msa0316170:intron | 35.0% |
| GATGAATATCCCTTTCAGTT+TGG | - | chr2_4:13070887-13070906 | Msa0316170:CDS | 35.0% | |
| GCAAGAATATAGTTAGGTGA+AGG | + | chr2_4:13070920-13070939 | None:intergenic | 35.0% | |
| !! | TGAATTGATAGTGTTGGAAG+TGG | - | chr2_4:13071097-13071116 | Msa0316170:intron | 35.0% |
| !!! | TCTGTTTTGGGTTGTAATTG+TGG | - | chr2_4:13071143-13071162 | Msa0316170:intron | 35.0% |
| ACAATACTAAACTGTGGCTT+TGG | - | chr2_4:13071238-13071257 | Msa0316170:intron | 35.0% | |
| !! | TTTGGATTCAGGTTGGTATT+TGG | - | chr2_4:13071256-13071275 | Msa0316170:intron | 35.0% |
| TTGGTATTTGGATTTACCTC+TGG | - | chr2_4:13071268-13071287 | Msa0316170:intron | 35.0% | |
| CATCATTGTAATCTAACCAG+AGG | + | chr2_4:13071287-13071306 | None:intergenic | 35.0% | |
| AATGATGTTGTGGACTTCAT+TGG | - | chr2_4:13071300-13071319 | Msa0316170:intron | 35.0% | |
| CATTACATTGGTATAGCCAT+AGG | - | chr2_4:13071406-13071425 | Msa0316170:intron | 35.0% | |
| GTATCATTTGTAGCTGCAAT+AGG | - | chr2_4:13071467-13071486 | Msa0316170:CDS | 35.0% | |
| GTGAGAATTCTACAGTTGAT+TGG | - | chr2_4:13071511-13071530 | Msa0316170:intron | 35.0% | |
| GTTTATTCAGTGGTTGTTCT+TGG | - | chr2_4:13071571-13071590 | Msa0316170:intron | 35.0% | |
| AATCTGGAAACACGAATTAC+CGG | + | chr2_4:13071628-13071647 | None:intergenic | 35.0% | |
| ! | TTCTGAGGGAAAAACATTCT+AGG | - | chr2_4:13071752-13071771 | Msa0316170:intron | 35.0% |
| AACTGTTTGGTATTACAGGT+TGG | - | chr2_4:13071901-13071920 | Msa0316170:intron | 35.0% | |
| CTTGCAAGTTGCTTCAATTA+AGG | + | chr2_4:13072133-13072152 | None:intergenic | 35.0% | |
| ATTGAGATCGACATACTCAT+TGG | - | chr2_4:13072161-13072180 | Msa0316170:intron | 35.0% | |
| TTGAGATCGACATACTCATT+GGG | - | chr2_4:13072162-13072181 | Msa0316170:intron | 35.0% | |
| CTTAGTACTTGTCAATTGTC+CGG | - | chr2_4:13072193-13072212 | Msa0316170:intron | 35.0% | |
| TCTTGTATCTGCAGTTGATT+CGG | - | chr2_4:13072315-13072334 | Msa0316170:intron | 35.0% | |
| !! | TGTTTTGGACCATCCTATTT+TGG | - | chr2_4:13072351-13072370 | Msa0316170:intron | 35.0% |
| AGATGAAGTCCAAAATAGGA+TGG | + | chr2_4:13072363-13072382 | None:intergenic | 35.0% | |
| TTTGGACTTCATCTACTACA+TGG | - | chr2_4:13072369-13072388 | Msa0316170:intron | 35.0% | |
| !!! | ACCCTTCGCTTTTAAAATAC+AGG | - | chr2_4:13072465-13072484 | Msa0316170:intron | 35.0% |
| !! | CACCTGTATTTTAAAAGCGA+AGG | + | chr2_4:13072470-13072489 | None:intergenic | 35.0% |
| !!! | CTTCGCTTTTAAAATACAGG+TGG | - | chr2_4:13072468-13072487 | Msa0316170:intron | 35.0% |
| !!! | CCCGTCGGTTATTATTTTAA+TGG | - | chr2_4:13072614-13072633 | Msa0316170:CDS | 35.0% |
| CTGCTTGAGAATATACTTGA+TGG | + | chr2_4:13072673-13072692 | None:intergenic | 35.0% | |
| ! | TGCTGATTATCACACATGTA+AGG | + | chr2_4:13072701-13072720 | None:intergenic | 35.0% |
| TCATGTAAGTAAAAGGAGCA+AGG | - | chr2_4:13072793-13072812 | Msa0316170:CDS | 35.0% | |
| !! | GCGGAAAGTGTTACAGAAAA+TGG | - | chr2_4:13069189-13069208 | Msa0316170:three_prime_UTR | 40.0% |
| AAACCATGAAGATGAATCGG+AGG | + | chr2_4:13069251-13069270 | None:intergenic | 40.0% | |
| ! | ACAGAGAGTGTAGAAAAGTG+GGG | + | chr2_4:13069299-13069318 | None:intergenic | 40.0% |
| ! | CACAGAGAGTGTAGAAAAGT+GGG | + | chr2_4:13069300-13069319 | None:intergenic | 40.0% |
| TGAGTAGTCCAACCATATTC+AGG | + | chr2_4:13069385-13069404 | None:intergenic | 40.0% | |
| ! | AGCTCAACTAGTCTGAACTA+AGG | - | chr2_4:13069863-13069882 | Msa0316170:CDS | 40.0% |
| ! | GCTCAACTAGTCTGAACTAA+GGG | - | chr2_4:13069864-13069883 | Msa0316170:CDS | 40.0% |
| TAAGGGTTTAAAGGAGTTGG+AGG | - | chr2_4:13069881-13069900 | Msa0316170:intron | 40.0% | |
| AAGGGTTTAAAGGAGTTGGA+GGG | - | chr2_4:13069882-13069901 | Msa0316170:intron | 40.0% | |
| TCGATTGTTCAGCTTCACTT+TGG | - | chr2_4:13069954-13069973 | Msa0316170:intron | 40.0% | |
| TTCACTTTGGACTACTAGAG+TGG | - | chr2_4:13069967-13069986 | Msa0316170:intron | 40.0% | |
| GTGTTTGTAGGAAAGTGAGT+TGG | - | chr2_4:13070098-13070117 | Msa0316170:intron | 40.0% | |
| ! | ACTGCAAATTGATTTCGGTC+TGG | + | chr2_4:13070233-13070252 | None:intergenic | 40.0% |
| AAAGGGAATTTGAACGTGCA+TGG | - | chr2_4:13070284-13070303 | Msa0316170:intron | 40.0% | |
| GCTTGAATACTGACATGCAA+TGG | - | chr2_4:13070412-13070431 | Msa0316170:intron | 40.0% | |
| GAATGAAATGAACCAGCTAG+TGG | - | chr2_4:13070599-13070618 | Msa0316170:intron | 40.0% | |
| AACATTTCGTCATCACACGA+AGG | + | chr2_4:13070639-13070658 | None:intergenic | 40.0% | |
| ATTTCATGATTGAGCAGGCA+AGG | - | chr2_4:13070698-13070717 | Msa0316170:CDS | 40.0% | |
| GTTTACCAACTGATAAGCTC+AGG | - | chr2_4:13070722-13070741 | Msa0316170:CDS | 40.0% | |
| ACTATCCTGAGCTTATCAGT+TGG | + | chr2_4:13070730-13070749 | None:intergenic | 40.0% | |
| !! | TGGTGCTGTCTATTTAATCC+AGG | - | chr2_4:13070765-13070784 | Msa0316170:intron | 40.0% |
| GGTTGAACTCCAAACTGAAA+GGG | + | chr2_4:13070899-13070918 | None:intergenic | 40.0% | |
| AGGTTGAACTCCAAACTGAA+AGG | + | chr2_4:13070900-13070919 | None:intergenic | 40.0% | |
| !! | TAAACTGTGGCTTTGGATTC+AGG | - | chr2_4:13071245-13071264 | Msa0316170:intron | 40.0% |
| ATCTGGAAACACGAATTACC+GGG | + | chr2_4:13071627-13071646 | None:intergenic | 40.0% | |
| ATTGAAGCAACTTGCAAGAG+AGG | - | chr2_4:13072135-13072154 | Msa0316170:intron | 40.0% | |
| TTGAAGCAACTTGCAAGAGA+GGG | - | chr2_4:13072136-13072155 | Msa0316170:intron | 40.0% | |
| TGAGATCGACATACTCATTG+GGG | - | chr2_4:13072163-13072182 | Msa0316170:intron | 40.0% | |
| ! | GGATGCATCTCTTGATGTTT+TGG | - | chr2_4:13072336-13072355 | Msa0316170:intron | 40.0% |
| ! | GTTGGTTGCCCTAACAATTT+TGG | - | chr2_4:13072415-13072434 | Msa0316170:intron | 40.0% |
| GAGCGACACCAAAATTGTTA+GGG | + | chr2_4:13072426-13072445 | None:intergenic | 40.0% | |
| AGAGCGACACCAAAATTGTT+AGG | + | chr2_4:13072427-13072446 | None:intergenic | 40.0% | |
| ATGAAGAGGACTATAGCTGA+AGG | + | chr2_4:13072505-13072524 | None:intergenic | 40.0% | |
| !! | TGAGTTGATATTCTCTTCGG+TGG | + | chr2_4:13072541-13072560 | None:intergenic | 40.0% |
| CCAAGATGCTCTACAGTTAA+TGG | + | chr2_4:13072576-13072595 | None:intergenic | 40.0% | |
| ! | CCATTAACTGTAGAGCATCT+TGG | - | chr2_4:13072573-13072592 | Msa0316170:intron | 40.0% |
| TTACTGTATTCTTCACCCGT+CGG | - | chr2_4:13072599-13072618 | Msa0316170:intron | 40.0% | |
| ! | ATATACTTGATGGGCAAGAG+CGG | + | chr2_4:13072663-13072682 | None:intergenic | 40.0% |
| AGTAAAAGGAGCAAGGATTG+AGG | - | chr2_4:13072800-13072819 | Msa0316170:CDS | 40.0% | |
| GTAAAAGGAGCAAGGATTGA+GGG | - | chr2_4:13072801-13072820 | Msa0316170:CDS | 40.0% | |
| GATTGAGGGAAGTTCATTGA+GGG | - | chr2_4:13072815-13072834 | Msa0316170:CDS | 40.0% | |
| ATTGAGGGAAGTTCATTGAG+GGG | - | chr2_4:13072816-13072835 | Msa0316170:CDS | 40.0% | |
| AGTGAGTGGAATCTGTGACA+AGG | + | chr2_4:13069276-13069295 | None:intergenic | 45.0% | |
| ! | GCACAGAGAGTGTAGAAAAG+TGG | + | chr2_4:13069301-13069320 | None:intergenic | 45.0% |
| !!! | CTTCGTTTTTAGTGGAGGTG+AGG | - | chr2_4:13069426-13069445 | Msa0316170:three_prime_UTR | 45.0% |
| CTTCATGAGAGTTTGAGCAC+CGG | + | chr2_4:13069908-13069927 | None:intergenic | 45.0% | |
| ! | ATTGATTTCGGTCTGGTTGC+TGG | + | chr2_4:13070226-13070245 | None:intergenic | 45.0% |
| !! | CGTGCATGGTTTGCTTGTTT+AGG | - | chr2_4:13070298-13070317 | Msa0316170:intron | 45.0% |
| !! | TTGGTGCTGTTAGATCTTCC+TGG | - | chr2_4:13070460-13070479 | Msa0316170:intron | 45.0% |
| !! | TGGTGCTGTTAGATCTTCCT+GGG | - | chr2_4:13070461-13070480 | Msa0316170:intron | 45.0% |
| GTTGAGAAAAACACAAGCCC+AGG | + | chr2_4:13070481-13070500 | None:intergenic | 45.0% | |
| CTGGGCTGAAATTTATCACC+AGG | - | chr2_4:13070522-13070541 | Msa0316170:CDS | 45.0% | |
| CGTTTCCCAATTGAGTCGAA+GGG | - | chr2_4:13071664-13071683 | Msa0316170:intron | 45.0% | |
| GTTTCCCAATTGAGTCGAAG+GGG | - | chr2_4:13071665-13071684 | Msa0316170:intron | 45.0% | |
| TTCTCCCCTTCGACTCAATT+GGG | + | chr2_4:13071672-13071691 | None:intergenic | 45.0% | |
| GAGAAGAAAGAAGCTGCAAG+AGG | - | chr2_4:13071687-13071706 | Msa0316170:intron | 45.0% | |
| ATCGACATACTCATTGGGGA+GGG | - | chr2_4:13072167-13072186 | Msa0316170:intron | 45.0% | |
| ! | GTGTCGCTCTCTTAACATAG+TGG | - | chr2_4:13072437-13072456 | Msa0316170:intron | 45.0% |
| GCAATTTGCGTAGGATGAAG+AGG | + | chr2_4:13072519-13072538 | None:intergenic | 45.0% | |
| TTTAATGGCGCTGCAGTTCA+TGG | - | chr2_4:13072629-13072648 | Msa0316170:CDS | 45.0% | |
| GATAATCAGCAGTTGCTGCT+CGG | - | chr2_4:13072710-13072729 | Msa0316170:intron | 45.0% | |
| GGATTGAGGGAAGTTCATTG+AGG | - | chr2_4:13072814-13072833 | Msa0316170:CDS | 45.0% | |
| CCATGAAGATGAATCGGAGG+AGG | + | chr2_4:13069248-13069267 | None:intergenic | 50.0% | |
| CCTCCTCCGATTCATCTTCA+TGG | - | chr2_4:13069245-13069264 | Msa0316170:three_prime_UTR | 50.0% | |
| GTAGAAAAGTGGGGAGTGAG+TGG | + | chr2_4:13069290-13069309 | None:intergenic | 50.0% | |
| GCAGTACGTGCTCTTGTGTT+TGG | - | chr2_4:13069550-13069569 | Msa0316170:three_prime_UTR | 50.0% | |
| GTTTAAAGGAGTTGGAGGGC+CGG | - | chr2_4:13069886-13069905 | Msa0316170:intron | 50.0% | |
| CGGTGCTCAAACTCTCATGA+AGG | - | chr2_4:13069906-13069925 | Msa0316170:intron | 50.0% | |
| !! | CTGTGGCTTTGGATTCAGGT+TGG | - | chr2_4:13071249-13071268 | Msa0316170:intron | 50.0% |
| TGGAAACACGAATTACCGGG+AGG | + | chr2_4:13071624-13071643 | None:intergenic | 50.0% | |
| GCGTTTCCCAATTGAGTCGA+AGG | - | chr2_4:13071663-13071682 | Msa0316170:intron | 50.0% | |
| CTTCTCCCCTTCGACTCAAT+TGG | + | chr2_4:13071673-13071692 | None:intergenic | 50.0% | |
| GATCGACATACTCATTGGGG+AGG | - | chr2_4:13072166-13072185 | Msa0316170:intron | 50.0% | |
| TCGACATACTCATTGGGGAG+GGG | - | chr2_4:13072168-13072187 | Msa0316170:intron | 50.0% | |
| AGAGGACTATAGCTGAAGGC+AGG | + | chr2_4:13072501-13072520 | None:intergenic | 50.0% | |
| TCTTCGGTGGCAATTTGCGT+AGG | + | chr2_4:13072528-13072547 | None:intergenic | 50.0% | |
| CGACATACTCATTGGGGAGG+GGG | - | chr2_4:13072169-13072188 | Msa0316170:intron | 55.0% | |
| TCAGCAGTTGCTGCTCGGTT+AGG | - | chr2_4:13072715-13072734 | Msa0316170:intron | 55.0% | |
| CAGCAGTTGCTGCTCGGTTA+GGG | - | chr2_4:13072716-13072735 | Msa0316170:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 13069189 | 13073017 | 13069189 | ID=Msa0316170;Name=Msa0316170 |
| chr2_4 | mRNA | 13069189 | 13073017 | 13069189 | ID=Msa0316170-mRNA-1;Parent=Msa0316170;Name=Msa0316170-mRNA-1;_AED=0.19;_eAED=0.19;_QI=19|0.88|0.9|1|0.66|0.8|10|438|276 |
| chr2_4 | exon | 13069189 | 13069719 | 13069189 | ID=Msa0316170-mRNA-1:exon:4946;Parent=Msa0316170-mRNA-1 |
| chr2_4 | exon | 13069816 | 13069893 | 13069816 | ID=Msa0316170-mRNA-1:exon:4945;Parent=Msa0316170-mRNA-1 |
| chr2_4 | exon | 13070234 | 13070287 | 13070234 | ID=Msa0316170-mRNA-1:exon:4944;Parent=Msa0316170-mRNA-1 |
| chr2_4 | exon | 13070498 | 13070561 | 13070498 | ID=Msa0316170-mRNA-1:exon:4943;Parent=Msa0316170-mRNA-1 |
| chr2_4 | exon | 13070696 | 13070741 | 13070696 | ID=Msa0316170-mRNA-1:exon:4942;Parent=Msa0316170-mRNA-1 |
| chr2_4 | exon | 13070867 | 13070939 | 13070867 | ID=Msa0316170-mRNA-1:exon:4941;Parent=Msa0316170-mRNA-1 |
| chr2_4 | exon | 13071420 | 13071491 | 13071420 | ID=Msa0316170-mRNA-1:exon:4940;Parent=Msa0316170-mRNA-1 |
| chr2_4 | exon | 13071693 | 13071755 | 13071693 | ID=Msa0316170-mRNA-1:exon:4939;Parent=Msa0316170-mRNA-1 |
| chr2_4 | exon | 13072600 | 13072652 | 13072600 | ID=Msa0316170-mRNA-1:exon:4938;Parent=Msa0316170-mRNA-1 |
| chr2_4 | exon | 13072764 | 13073017 | 13072764 | ID=Msa0316170-mRNA-1:exon:4937;Parent=Msa0316170-mRNA-1 |
| chr2_4 | five_prime_UTR | 13072999 | 13073017 | 13072999 | ID=Msa0316170-mRNA-1:five_prime_utr;Parent=Msa0316170-mRNA-1 |
| chr2_4 | CDS | 13072764 | 13072998 | 13072764 | ID=Msa0316170-mRNA-1:cds;Parent=Msa0316170-mRNA-1 |
| chr2_4 | CDS | 13072600 | 13072652 | 13072600 | ID=Msa0316170-mRNA-1:cds;Parent=Msa0316170-mRNA-1 |
| chr2_4 | CDS | 13071693 | 13071755 | 13071693 | ID=Msa0316170-mRNA-1:cds;Parent=Msa0316170-mRNA-1 |
| chr2_4 | CDS | 13071420 | 13071491 | 13071420 | ID=Msa0316170-mRNA-1:cds;Parent=Msa0316170-mRNA-1 |
| chr2_4 | CDS | 13070867 | 13070939 | 13070867 | ID=Msa0316170-mRNA-1:cds;Parent=Msa0316170-mRNA-1 |
| chr2_4 | CDS | 13070696 | 13070741 | 13070696 | ID=Msa0316170-mRNA-1:cds;Parent=Msa0316170-mRNA-1 |
| chr2_4 | CDS | 13070498 | 13070561 | 13070498 | ID=Msa0316170-mRNA-1:cds;Parent=Msa0316170-mRNA-1 |
| chr2_4 | CDS | 13070234 | 13070287 | 13070234 | ID=Msa0316170-mRNA-1:cds;Parent=Msa0316170-mRNA-1 |
| chr2_4 | CDS | 13069816 | 13069893 | 13069816 | ID=Msa0316170-mRNA-1:cds;Parent=Msa0316170-mRNA-1 |
| chr2_4 | CDS | 13069627 | 13069719 | 13069627 | ID=Msa0316170-mRNA-1:cds;Parent=Msa0316170-mRNA-1 |
| chr2_4 | three_prime_UTR | 13069189 | 13069626 | 13069189 | ID=Msa0316170-mRNA-1:three_prime_utr;Parent=Msa0316170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
