Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0276760 | XP_013462902.1 | 83.689 | 515 | 51 | 4 | 1 | 482 | 1 | 515 | 0.0 | 868 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0276760 | sp|Q84WU6|ARFQ_ARATH | 35.586 | 503 | 254 | 16 | 14 | 459 | 42 | 531 | 1.11e-79 | 261 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0276760 | A0A072V559 | 83.689 | 515 | 51 | 4 | 1 | 482 | 1 | 515 | 0.0 | 868 |
Gene ID | Type | Classification |
---|---|---|
Msa0276760 | TF | B3-ARF |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0197120 | Msa0276760 | 0.956460 | 2.802850e-114 | -8.615850e-47 |
Msa0276760 | Msa0316700 | 0.912404 | 2.025143e-83 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0276760 | MtrunA17_Chr2g0289221 | 83.489 | 321 | 23 | 2 | 1 | 291 | 1 | 321 | 0.0 | 543 |
Msa0276760 | MtrunA17_Chr5g0417281 | 58.058 | 484 | 184 | 9 | 14 | 481 | 34 | 514 | 2.36e-176 | 505 |
Msa0276760 | MtrunA17_Chr5g0436761 | 53.305 | 469 | 168 | 7 | 14 | 476 | 35 | 458 | 3.24e-158 | 456 |
Msa0276760 | MtrunA17_Chr5g0424931 | 49.012 | 506 | 199 | 13 | 14 | 481 | 42 | 526 | 4.36e-143 | 421 |
Msa0276760 | MtrunA17_Chr5g0417211 | 51.163 | 473 | 124 | 9 | 14 | 481 | 35 | 405 | 1.46e-140 | 410 |
Msa0276760 | MtrunA17_Chr1g0178011 | 42.947 | 475 | 190 | 14 | 14 | 474 | 35 | 442 | 1.08e-108 | 330 |
Msa0276760 | MtrunA17_Chr3g0115271 | 42.515 | 501 | 223 | 12 | 39 | 481 | 64 | 557 | 4.49e-108 | 333 |
Msa0276760 | MtrunA17_Chr2g0277461 | 43.277 | 476 | 200 | 11 | 14 | 480 | 36 | 450 | 2.90e-107 | 326 |
Msa0276760 | MtrunA17_Chr5g0424741 | 38.710 | 496 | 210 | 19 | 17 | 434 | 38 | 517 | 1.91e-78 | 254 |
Msa0276760 | MtrunA17_Chr5g0425261 | 45.257 | 369 | 156 | 16 | 14 | 363 | 35 | 376 | 4.82e-77 | 246 |
Msa0276760 | MtrunA17_Chr5g0424801 | 47.634 | 317 | 132 | 13 | 14 | 311 | 35 | 336 | 1.26e-76 | 244 |
Msa0276760 | MtrunA17_Chr2g0326761 | 39.474 | 380 | 155 | 11 | 14 | 332 | 34 | 399 | 4.80e-73 | 244 |
Msa0276760 | MtrunA17_Chr1g0199681 | 33.996 | 503 | 231 | 15 | 17 | 434 | 94 | 580 | 4.74e-71 | 238 |
Msa0276760 | MtrunA17_Chr1g0181211 | 38.947 | 380 | 163 | 10 | 14 | 331 | 50 | 422 | 8.58e-71 | 238 |
Msa0276760 | MtrunA17_Chr2g0277531 | 45.965 | 285 | 138 | 10 | 14 | 291 | 43 | 318 | 4.00e-69 | 223 |
Msa0276760 | MtrunA17_Chr4g0028971 | 38.624 | 378 | 161 | 10 | 14 | 329 | 35 | 403 | 7.16e-69 | 233 |
Msa0276760 | MtrunA17_Chr7g0264171 | 36.410 | 390 | 164 | 12 | 14 | 332 | 54 | 430 | 1.69e-63 | 216 |
Msa0276760 | MtrunA17_Chr7g0264161 | 39.735 | 302 | 143 | 10 | 14 | 291 | 15 | 301 | 2.28e-56 | 189 |
Msa0276760 | MtrunA17_Chr2g0282961 | 34.225 | 374 | 192 | 13 | 11 | 336 | 45 | 412 | 3.31e-50 | 181 |
Msa0276760 | MtrunA17_Chr5g0425661 | 47.191 | 178 | 88 | 2 | 14 | 189 | 60 | 233 | 9.62e-47 | 162 |
Msa0276760 | MtrunA17_Chr4g0046371 | 30.947 | 433 | 244 | 13 | 14 | 416 | 61 | 468 | 5.37e-46 | 170 |
Msa0276760 | MtrunA17_Chr2g0276781 | 36.610 | 295 | 166 | 9 | 43 | 321 | 76 | 365 | 2.77e-43 | 162 |
Msa0276760 | MtrunA17_Chr4g0009751 | 33.770 | 305 | 177 | 8 | 43 | 329 | 72 | 369 | 3.03e-42 | 159 |
Msa0276760 | MtrunA17_Chr8g0385791 | 34.967 | 306 | 176 | 8 | 43 | 330 | 112 | 412 | 2.51e-41 | 157 |
Msa0276760 | MtrunA17_Chr8g0346711 | 35.430 | 302 | 174 | 9 | 43 | 329 | 82 | 377 | 1.07e-40 | 155 |
Msa0276760 | MtrunA17_Chr2g0326281 | 30.221 | 407 | 221 | 13 | 36 | 386 | 101 | 500 | 1.88e-40 | 155 |
Msa0276760 | MtrunA17_Chr2g0301251 | 32.069 | 290 | 169 | 9 | 43 | 312 | 76 | 357 | 2.88e-40 | 155 |
Msa0276760 | MtrunA17_Chr4g0029671 | 33.333 | 312 | 179 | 8 | 43 | 329 | 106 | 413 | 3.97e-40 | 154 |
Msa0276760 | MtrunA17_Chr4g0070181 | 32.414 | 290 | 168 | 9 | 43 | 312 | 76 | 357 | 1.19e-39 | 153 |
Msa0276760 | MtrunA17_Chr2g0285461 | 32.476 | 311 | 174 | 10 | 34 | 316 | 61 | 363 | 1.32e-39 | 152 |
Msa0276760 | MtrunA17_Chr7g0239061 | 34.539 | 304 | 175 | 11 | 43 | 329 | 67 | 363 | 8.24e-39 | 149 |
Msa0276760 | MtrunA17_Chr5g0433301 | 32.362 | 309 | 177 | 9 | 34 | 316 | 62 | 364 | 1.25e-38 | 149 |
Msa0276760 | MtrunA17_Chr8g0376771 | 33.000 | 300 | 162 | 11 | 43 | 316 | 76 | 362 | 1.94e-38 | 149 |
Msa0276760 | MtrunA17_Chr8g0389081 | 31.507 | 292 | 173 | 9 | 42 | 313 | 85 | 369 | 8.18e-38 | 147 |
Msa0276760 | MtrunA17_Chr3g0109391 | 32.039 | 309 | 178 | 9 | 34 | 316 | 64 | 366 | 1.37e-37 | 147 |
Msa0276760 | MtrunA17_Chr1g0156321 | 36.207 | 290 | 153 | 13 | 43 | 310 | 97 | 376 | 1.79e-37 | 146 |
Msa0276760 | MtrunA17_Chr5g0424791 | 44.000 | 150 | 72 | 6 | 42 | 190 | 13 | 151 | 8.34e-24 | 97.4 |
Msa0276760 | MtrunA17_Chr5g0425651 | 49.558 | 113 | 49 | 6 | 209 | 314 | 1 | 112 | 2.05e-23 | 95.1 |
Msa0276760 | MtrunA17_Chr8g0356211 | 27.354 | 223 | 145 | 5 | 101 | 310 | 2 | 220 | 3.97e-23 | 99.8 |
Msa0276760 | MtrunA17_Chr5g0419861 | 42.623 | 122 | 64 | 2 | 23 | 141 | 5 | 123 | 1.81e-18 | 81.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0276760 | AT1G77850.1 | 35.586 | 503 | 254 | 16 | 14 | 459 | 42 | 531 | 1.13e-80 | 261 |
Msa0276760 | AT1G77850.2 | 35.586 | 503 | 254 | 16 | 14 | 459 | 42 | 531 | 1.41e-80 | 262 |
Msa0276760 | AT4G30080.1 | 37.923 | 414 | 168 | 13 | 17 | 350 | 19 | 423 | 3.58e-70 | 236 |
Msa0276760 | AT2G28350.2 | 37.859 | 383 | 161 | 12 | 17 | 334 | 36 | 406 | 1.22e-65 | 224 |
Msa0276760 | AT2G28350.1 | 37.859 | 383 | 161 | 12 | 17 | 334 | 36 | 406 | 1.54e-65 | 224 |
Msa0276760 | AT2G46530.1 | 36.808 | 307 | 165 | 12 | 43 | 329 | 75 | 372 | 4.91e-44 | 164 |
Msa0276760 | AT2G46530.3 | 36.808 | 307 | 165 | 12 | 43 | 329 | 96 | 393 | 1.20e-43 | 163 |
Msa0276760 | AT3G61830.2 | 36.842 | 285 | 154 | 11 | 43 | 310 | 28 | 303 | 1.94e-42 | 159 |
Msa0276760 | AT5G37020.2 | 33.333 | 309 | 174 | 9 | 34 | 316 | 60 | 362 | 3.92e-42 | 160 |
Msa0276760 | AT3G61830.1 | 36.842 | 285 | 154 | 11 | 43 | 310 | 79 | 354 | 4.45e-42 | 158 |
Msa0276760 | AT5G37020.1 | 33.333 | 309 | 174 | 9 | 34 | 316 | 60 | 362 | 4.67e-42 | 160 |
Msa0276760 | AT5G60450.2 | 35.599 | 309 | 173 | 11 | 43 | 327 | 93 | 399 | 2.02e-41 | 158 |
Msa0276760 | AT5G60450.1 | 35.599 | 309 | 173 | 11 | 43 | 327 | 117 | 423 | 2.44e-41 | 158 |
Msa0276760 | AT1G35520.1 | 36.538 | 312 | 168 | 12 | 43 | 336 | 80 | 379 | 2.48e-41 | 156 |
Msa0276760 | AT1G59750.1 | 35.211 | 284 | 163 | 8 | 43 | 310 | 75 | 353 | 3.92e-41 | 156 |
Msa0276760 | AT1G59750.3 | 35.211 | 284 | 163 | 8 | 43 | 310 | 75 | 353 | 3.92e-41 | 156 |
Msa0276760 | AT1G59750.2 | 35.211 | 284 | 163 | 8 | 43 | 310 | 75 | 353 | 4.43e-41 | 156 |
Msa0276760 | AT1G59750.4 | 35.211 | 284 | 163 | 8 | 43 | 310 | 75 | 353 | 4.94e-41 | 156 |
Msa0276760 | AT2G33860.1 | 33.540 | 322 | 179 | 10 | 14 | 310 | 77 | 388 | 1.08e-40 | 154 |
Msa0276760 | AT1G34410.1 | 34.936 | 312 | 173 | 11 | 43 | 336 | 80 | 379 | 2.22e-40 | 154 |
Msa0276760 | AT2G46530.2 | 37.638 | 271 | 142 | 11 | 77 | 329 | 24 | 285 | 2.52e-40 | 152 |
Msa0276760 | AT2G33860.2 | 37.931 | 232 | 124 | 7 | 95 | 310 | 4 | 231 | 3.32e-40 | 150 |
Msa0276760 | AT1G34390.1 | 37.049 | 305 | 160 | 14 | 43 | 329 | 80 | 370 | 3.54e-40 | 153 |
Msa0276760 | AT4G23980.1 | 34.035 | 285 | 163 | 9 | 43 | 310 | 66 | 342 | 3.97e-40 | 153 |
Msa0276760 | AT4G23980.2 | 34.035 | 285 | 163 | 9 | 43 | 310 | 66 | 342 | 4.01e-40 | 153 |
Msa0276760 | AT5G62000.2 | 34.098 | 305 | 178 | 8 | 43 | 329 | 114 | 413 | 1.05e-39 | 153 |
Msa0276760 | AT5G62000.5 | 34.098 | 305 | 178 | 8 | 43 | 329 | 114 | 413 | 1.05e-39 | 153 |
Msa0276760 | AT5G62000.3 | 34.098 | 305 | 178 | 8 | 43 | 329 | 114 | 413 | 1.05e-39 | 153 |
Msa0276760 | AT5G62000.1 | 34.098 | 305 | 178 | 8 | 43 | 329 | 114 | 413 | 1.05e-39 | 153 |
Msa0276760 | AT5G62000.4 | 34.098 | 305 | 178 | 8 | 43 | 329 | 114 | 413 | 1.14e-39 | 153 |
Msa0276760 | AT1G34310.1 | 35.410 | 305 | 167 | 12 | 43 | 329 | 80 | 372 | 1.84e-38 | 148 |
Msa0276760 | AT1G19850.2 | 35.836 | 293 | 151 | 10 | 43 | 310 | 97 | 377 | 2.46e-38 | 149 |
Msa0276760 | AT1G30330.1 | 32.362 | 309 | 177 | 9 | 34 | 316 | 61 | 363 | 2.65e-38 | 149 |
Msa0276760 | AT1G19850.1 | 35.836 | 293 | 151 | 10 | 43 | 310 | 108 | 388 | 2.74e-38 | 149 |
Msa0276760 | AT1G30330.3 | 32.362 | 309 | 177 | 9 | 34 | 316 | 63 | 365 | 2.84e-38 | 149 |
Msa0276760 | AT1G30330.2 | 32.362 | 309 | 177 | 9 | 34 | 316 | 63 | 365 | 2.84e-38 | 149 |
Msa0276760 | AT1G35240.1 | 35.314 | 303 | 170 | 11 | 43 | 329 | 80 | 372 | 5.49e-38 | 147 |
Msa0276760 | AT5G37020.3 | 35.685 | 241 | 130 | 8 | 95 | 316 | 33 | 267 | 7.80e-38 | 147 |
Msa0276760 | AT5G20730.3 | 32.069 | 290 | 170 | 8 | 43 | 312 | 77 | 359 | 1.13e-37 | 147 |
Msa0276760 | AT5G20730.1 | 32.069 | 290 | 170 | 8 | 43 | 312 | 77 | 359 | 1.20e-37 | 147 |
Msa0276760 | AT1G35540.1 | 34.276 | 283 | 161 | 10 | 43 | 310 | 80 | 352 | 3.15e-37 | 144 |
Msa0276760 | AT5G20730.2 | 32.069 | 290 | 169 | 9 | 43 | 312 | 77 | 358 | 1.81e-36 | 144 |
Msa0276760 | AT1G19220.1 | 32.302 | 291 | 167 | 9 | 43 | 312 | 76 | 357 | 3.02e-36 | 143 |
Msa0276760 | AT1G34170.1 | 28.780 | 410 | 247 | 16 | 43 | 427 | 78 | 467 | 6.52e-34 | 134 |
Msa0276760 | AT1G34170.2 | 27.930 | 401 | 236 | 16 | 43 | 427 | 78 | 441 | 2.75e-28 | 117 |
Msa0276760 | AT1G34170.3 | 27.806 | 392 | 231 | 15 | 43 | 419 | 78 | 432 | 1.15e-27 | 116 |
Msa0276760 | AT1G43950.1 | 39.474 | 152 | 82 | 5 | 43 | 193 | 80 | 222 | 8.23e-21 | 91.3 |
Msa0276760 | ATMG00940.1 | 37.963 | 108 | 62 | 3 | 180 | 287 | 42 | 144 | 9.34e-13 | 66.6 |
Msa0276760 | AT4G01500.1 | 30.597 | 134 | 90 | 1 | 95 | 228 | 38 | 168 | 2.78e-11 | 65.1 |
Find 128 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTGGTTCATTTATGCTATT+TGG | 0.105998 | 2_3:+9023984 | Msa0276760:CDS |
AACATTAGCACATCTATATT+TGG | 0.209645 | 2_3:+9023873 | Msa0276760:CDS |
AATATATATTATAGGTTAAC+TGG | 0.211032 | 2_3:+9023496 | Msa0276760:intron |
GGAGACATGGCGGAAATATT+TGG | 0.255210 | 2_3:-9021581 | None:intergenic |
CTTCCAACTCTTTCAATGAT+AGG | 0.271660 | 2_3:+9023790 | Msa0276760:CDS |
TTCTTTGGTGCTGCACTTGT+GGG | 0.284414 | 2_3:-9023955 | None:intergenic |
TGAACCAGGATTAACTTCTT+TGG | 0.304162 | 2_3:-9023970 | None:intergenic |
AGGGATAGGGTTTCAGTGTT+GGG | 0.310433 | 2_3:-9021733 | None:intergenic |
ACCTCCCAAGGGCTTTGCTT+TGG | 0.312781 | 2_3:-9023543 | None:intergenic |
GACACCTGATCACCACTAAT+TGG | 0.319561 | 2_3:+9022121 | Msa0276760:CDS |
CCGACGTTCATGGCAAAGTC+TGG | 0.342190 | 2_3:+9022064 | Msa0276760:CDS |
TACAATTGCCCTCAGCAAAA+AGG | 0.346652 | 2_3:+9023598 | Msa0276760:CDS |
TTTGGATTATGTGAGACTTC+AGG | 0.376866 | 2_3:-9023525 | None:intergenic |
AGGATGCAATGAAGATTAAC+TGG | 0.377747 | 2_3:+9022385 | Msa0276760:CDS |
ATCCGTCGGCATACTAAGTT+TGG | 0.389012 | 2_3:+9022231 | Msa0276760:CDS |
CTTCTTTGGTGCTGCACTTG+TGG | 0.393725 | 2_3:-9023956 | None:intergenic |
CCCTTTGAGACAAAGTTTGA+CGG | 0.397840 | 2_3:+9023930 | Msa0276760:CDS |
AATATAGATGTGCTAATGTT+TGG | 0.410256 | 2_3:-9023870 | None:intergenic |
AAAATCCTTGAATACATTGT+TGG | 0.413811 | 2_3:+9023704 | Msa0276760:CDS |
CTGTCTGTTACCGACGTTCA+TGG | 0.414559 | 2_3:+9022054 | Msa0276760:CDS |
CACCGTTATTAGCATCAGAT+AGG | 0.414739 | 2_3:-9021951 | None:intergenic |
CCGTCAAACTTTGTCTCAAA+GGG | 0.416058 | 2_3:-9023930 | None:intergenic |
GGTGATGAAATTGTTTCCTC+TGG | 0.421466 | 2_3:+9021916 | Msa0276760:CDS |
GGGATAGGGTTTCAGTGTTG+GGG | 0.425954 | 2_3:-9021732 | None:intergenic |
TACTCCAATTAGTGGTGATC+AGG | 0.433415 | 2_3:-9022125 | None:intergenic |
AGCATGCGCCATGGACGATT+AGG | 0.434996 | 2_3:-9022501 | None:intergenic |
TCATCTGGAGATATGTTTGT+TGG | 0.440275 | 2_3:+9022207 | Msa0276760:CDS |
GAAACCCTATCCCTTCTTGA+TGG | 0.440854 | 2_3:+9021742 | Msa0276760:CDS |
ACAATCCAACAATGTATTCA+AGG | 0.441558 | 2_3:-9023709 | None:intergenic |
AACCATCAGTGATGGGAGTT+AGG | 0.442469 | 2_3:-9021849 | None:intergenic |
CAAGGGAGAAGATGGTTGTA+TGG | 0.451305 | 2_3:+9024052 | Msa0276760:CDS |
CACGAACTTACTCCAATTAG+TGG | 0.453246 | 2_3:-9022133 | None:intergenic |
GGTTATGGCGGCAGCGGAGT+TGG | 0.455795 | 2_3:+9022278 | Msa0276760:CDS |
GAGATGGCTGTTTAGTTTCG+AGG | 0.456957 | 2_3:-9022026 | None:intergenic |
AAGGGATAGGGTTTCAGTGT+TGG | 0.458344 | 2_3:-9021734 | None:intergenic |
TCATGCAAATTACTTCCAAC+AGG | 0.463742 | 2_3:-9024020 | None:intergenic |
TTCAAAATGCTATGGTTAAG+AGG | 0.466292 | 2_3:-9023906 | None:intergenic |
GATAACTAAAGAATCGGTTA+TGG | 0.468357 | 2_3:+9022263 | Msa0276760:CDS |
GGTTCTACACGGCTGGGTTG+TGG | 0.468361 | 2_3:-9021605 | None:intergenic |
TTTCAATCCTTGCATTGTAT+CGG | 0.468436 | 2_3:+9021774 | Msa0276760:CDS |
GAGTATTATCCTACGATTGA+AGG | 0.470883 | 2_3:+9022327 | Msa0276760:CDS |
TTCCAACTCTTTCAATGATA+GGG | 0.473757 | 2_3:+9023791 | Msa0276760:CDS |
ACAAAGACTTCATCAGTATG+AGG | 0.479542 | 2_3:-9021817 | None:intergenic |
GATAGGGTTTCAGTGTTGGG+GGG | 0.483168 | 2_3:-9021730 | None:intergenic |
ACCGTCAAACTTTGTCTCAA+AGG | 0.497762 | 2_3:-9023931 | None:intergenic |
CATTGCATCCTCAACAACCT+TGG | 0.498204 | 2_3:-9022373 | None:intergenic |
GGATAGGGTTTCAGTGTTGG+GGG | 0.498312 | 2_3:-9021731 | None:intergenic |
AGAATCGGTTATGGCGGCAG+CGG | 0.500580 | 2_3:+9022272 | Msa0276760:CDS |
GGCCCTATCATTGAAAGAGT+TGG | 0.504567 | 2_3:-9023793 | None:intergenic |
CTGGAAATCTATCATTGGAA+TGG | 0.511209 | 2_3:-9023670 | None:intergenic |
TCTGCTACCAAGGGAGAAGA+TGG | 0.513250 | 2_3:+9024044 | Msa0276760:CDS |
GAATGCTGGAAATCTATCAT+TGG | 0.515653 | 2_3:-9023675 | None:intergenic |
GAAATATTTGGTTCTACCAT+CGG | 0.518665 | 2_3:-9021569 | None:intergenic |
TGCTAAGATAACTAAAGAAT+CGG | 0.520496 | 2_3:+9022257 | Msa0276760:CDS |
CGTGACCATCAAGAAGGGAT+AGG | 0.523750 | 2_3:-9021747 | None:intergenic |
TCTCTCTATATTATCTAATG+AGG | 0.525248 | 2_3:-9023643 | None:intergenic |
TTTGCATGATTCTGCTACCA+AGG | 0.526896 | 2_3:+9024034 | Msa0276760:CDS |
GCTGGGTTGTGGTGGAGACA+TGG | 0.530128 | 2_3:-9021594 | None:intergenic |
ATATTATAGGTTAACTGGGA+TGG | 0.530339 | 2_3:+9023501 | Msa0276760:intron |
AGTGGTGATCAGGTGTCTCA+AGG | 0.534349 | 2_3:-9022115 | None:intergenic |
TAATCCAAAGCAAAGCCCTT+GGG | 0.536094 | 2_3:+9023539 | Msa0276760:CDS |
GTATGGGCTGCAATAATTGA+AGG | 0.536513 | 2_3:+9024069 | Msa0276760:CDS |
GAAATTAGTTCAACCTCCCA+AGG | 0.540471 | 2_3:-9023555 | None:intergenic |
TATGGCGGCAGCGGAGTTGG+CGG | 0.543054 | 2_3:+9022281 | Msa0276760:CDS |
ATGAAGATTAACTGGAATTG+TGG | 0.543117 | 2_3:+9022393 | Msa0276760:CDS |
CACTAATTGGAGTAAGTTCG+TGG | 0.543836 | 2_3:+9022134 | Msa0276760:CDS |
GATACAATGCAAGGATTGAA+AGG | 0.544112 | 2_3:-9021772 | None:intergenic |
CAAAGGGGTTCAAAATGCTA+TGG | 0.546020 | 2_3:-9023914 | None:intergenic |
CTCCTAACTCCCATCACTGA+TGG | 0.547018 | 2_3:+9021847 | Msa0276760:CDS |
ATAATCCAAAGCAAAGCCCT+TGG | 0.548641 | 2_3:+9023538 | Msa0276760:CDS |
CATACAACCATCTTCTCCCT+TGG | 0.552659 | 2_3:-9024051 | None:intergenic |
TCGTCCATGGCGCATGCTTG+AGG | 0.553392 | 2_3:+9022506 | Msa0276760:CDS |
ACCGTTATTAGCATCAGATA+GGG | 0.553783 | 2_3:-9021950 | None:intergenic |
TCTTCACGAACCTCAGTAGG+AGG | 0.555844 | 2_3:-9021883 | None:intergenic |
TCTCTGCTCCTAATCGTCCA+TGG | 0.557073 | 2_3:+9022493 | Msa0276760:CDS |
TTGCATGATTCTGCTACCAA+GGG | 0.558661 | 2_3:+9024035 | Msa0276760:CDS |
TCTTTGGTGCTGCACTTGTG+GGG | 0.558880 | 2_3:-9023954 | None:intergenic |
ATGATGATTATTCAAAGAGA+TGG | 0.559089 | 2_3:+9022442 | Msa0276760:CDS |
GGCAATTGTAGATTCAGTGC+AGG | 0.560065 | 2_3:-9023585 | None:intergenic |
ACCCTATCTGATGCTAATAA+CGG | 0.564674 | 2_3:+9021949 | Msa0276760:CDS |
TCCTACTGAGGTTCGTGAAG+AGG | 0.565181 | 2_3:+9021885 | Msa0276760:CDS |
AGTATTATCCTACGATTGAA+GGG | 0.565286 | 2_3:+9022328 | Msa0276760:CDS |
AAGGGAGAAGATGGTTGTAT+GGG | 0.567406 | 2_3:+9024053 | Msa0276760:CDS |
GGTGGATGCCAAGGTTGTTG+AGG | 0.569678 | 2_3:+9022365 | Msa0276760:CDS |
TCACAAAACCCTTCAATCGT+AGG | 0.570407 | 2_3:-9022336 | None:intergenic |
GTGAACACAACCATCAGTGA+TGG | 0.572216 | 2_3:-9021857 | None:intergenic |
CGACGTTCATGGCAAAGTCT+GGG | 0.573902 | 2_3:+9022065 | Msa0276760:CDS |
CCAAATAGCATAAATGAACC+AGG | 0.581265 | 2_3:-9023984 | None:intergenic |
AGCACCAAAGAAGTTAATCC+TGG | 0.583231 | 2_3:+9023966 | Msa0276760:CDS |
GTGACCATCAAGAAGGGATA+GGG | 0.586087 | 2_3:-9021746 | None:intergenic |
ATATGTTTGTTGGAATCCGT+CGG | 0.586941 | 2_3:+9022217 | Msa0276760:CDS |
GTTCGTGAAGAGGAACCTAC+AGG | 0.587140 | 2_3:+9021895 | Msa0276760:CDS |
TCTACACGGCTGGGTTGTGG+TGG | 0.587866 | 2_3:-9021602 | None:intergenic |
GTGGTGATCAGGTGTCTCAA+GGG | 0.590017 | 2_3:-9022114 | None:intergenic |
TGTTCACAAACCTCCTACTG+AGG | 0.591520 | 2_3:+9021873 | Msa0276760:CDS |
AACTAAAGAATCGGTTATGG+CGG | 0.592037 | 2_3:+9022266 | Msa0276760:CDS |
GACTTCATCAGTATGAGGAT+CGG | 0.593232 | 2_3:-9021812 | None:intergenic |
GAAACAATTTCATCACCTGT+AGG | 0.594064 | 2_3:-9021910 | None:intergenic |
ATATATATTATAGGTTAACT+GGG | 0.595356 | 2_3:+9023497 | Msa0276760:intron |
AGGGAGTTCCACGGTAGACA+TGG | 0.596664 | 2_3:-9022095 | None:intergenic |
CTATCCCTTCTTGATGGTCA+CGG | 0.597434 | 2_3:+9021748 | Msa0276760:CDS |
AAGGACCGTGACCATCAAGA+AGG | 0.601243 | 2_3:-9021753 | None:intergenic |
TGTTTAGTTTCGAGGTCAAG+CGG | 0.603245 | 2_3:-9022018 | None:intergenic |
GGTAAGATGATACATCCTGT+TGG | 0.604159 | 2_3:+9024005 | Msa0276760:CDS |
TAGTTTCGAGGTCAAGCGGT+GGG | 0.611231 | 2_3:-9022014 | None:intergenic |
TGAACACAACCATCAGTGAT+GGG | 0.614197 | 2_3:-9021856 | None:intergenic |
ATTGATGTCGCGCAAGAACG+AGG | 0.619010 | 2_3:-9021988 | None:intergenic |
TCCTCTTCACGAACCTCAGT+AGG | 0.621000 | 2_3:-9021886 | None:intergenic |
AGAGTTGGAAGTAGTTCCTG+TGG | 0.623129 | 2_3:-9023778 | None:intergenic |
TATACCTCAAGCATGCGCCA+TGG | 0.631418 | 2_3:-9022510 | None:intergenic |
TCCAAAGCAAAGCCCTTGGG+AGG | 0.633549 | 2_3:+9023542 | Msa0276760:CDS |
AAATTAGTTCAACCTCCCAA+GGG | 0.635245 | 2_3:-9023554 | None:intergenic |
CACCAAACTTAGTATGCCGA+CGG | 0.637276 | 2_3:-9022233 | None:intergenic |
GTAACAGACAGTTCTTGAGA+TGG | 0.639997 | 2_3:-9022042 | None:intergenic |
AGGACCGTGACCATCAAGAA+GGG | 0.643039 | 2_3:-9021752 | None:intergenic |
AAAAGGCTTAGAGTTGCTCA+GGG | 0.650442 | 2_3:+9023615 | Msa0276760:CDS |
TGTCGCGCAAGAACGAGGTA+CGG | 0.658162 | 2_3:-9021983 | None:intergenic |
GACGAAAAGAAACTCGTCTG+CGG | 0.661354 | 2_3:+9022156 | Msa0276760:CDS |
GGGTTGTGGTGGAGACATGG+CGG | 0.664200 | 2_3:-9021591 | None:intergenic |
GAGTTTCGCCATGTCTACCG+TGG | 0.667413 | 2_3:+9022087 | Msa0276760:CDS |
CGTCAAACTTTGTCTCAAAG+GGG | 0.667527 | 2_3:-9023929 | None:intergenic |
TCAACGGCCGATACAATGCA+AGG | 0.667965 | 2_3:-9021781 | None:intergenic |
AGGATCGGCGAGGTAATCAA+CGG | 0.669436 | 2_3:-9021797 | None:intergenic |
GGTGTCTCAAGGGAGTTCCA+CGG | 0.685317 | 2_3:-9022104 | None:intergenic |
CCAGACTTTGCCATGAACGT+CGG | 0.685939 | 2_3:-9022064 | None:intergenic |
CTATCTGATGCTAATAACGG+TGG | 0.699278 | 2_3:+9021952 | Msa0276760:CDS |
TTAGTTTCGAGGTCAAGCGG+TGG | 0.704813 | 2_3:-9022015 | None:intergenic |
CATCAGTATGAGGATCGGCG+AGG | 0.728455 | 2_3:-9021807 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAACATATATGTAAACAAA+CGG | - | chr2_3:9023198-9023217 | None:intergenic | 15.0% |
!! | ATCATATAAATGATTAATGT+TGG | + | chr2_3:9023452-9023471 | Msa0276760:intron | 15.0% |
!! | TTCATCTCAATATATATTAT+AGG | + | chr2_3:9023488-9023507 | Msa0276760:intron | 15.0% |
!! | AATATATATTATAGGTTAAC+TGG | + | chr2_3:9023496-9023515 | Msa0276760:intron | 15.0% |
!! | ATATATATTATAGGTTAACT+GGG | + | chr2_3:9023497-9023516 | Msa0276760:intron | 15.0% |
!!! | TAAACTTTTGAATGAAGTTT+AGG | - | chr2_3:9021671-9021690 | None:intergenic | 20.0% |
!! | TTTATGAAAAAGAAATCATC+TGG | + | chr2_3:9022192-9022211 | Msa0276760:CDS | 20.0% |
!! | TTATGAACAATTATATGCAA+AGG | + | chr2_3:9022699-9022718 | Msa0276760:intron | 20.0% |
!! | AAAAACAACAACGATATATT+GGG | - | chr2_3:9022974-9022993 | None:intergenic | 20.0% |
!! | AAAAAACAACAACGATATAT+TGG | - | chr2_3:9022975-9022994 | None:intergenic | 20.0% |
!!! | TTTCTAAAAAAACAAGCAAA+TGG | - | chr2_3:9023021-9023040 | None:intergenic | 20.0% |
!! | TAAAATCAATGAAGTTAATG+TGG | - | chr2_3:9023111-9023130 | None:intergenic | 20.0% |
!! | AATTATTTCAGAAGTTGAAA+TGG | + | chr2_3:9023154-9023173 | Msa0276760:intron | 20.0% |
!! | ATTATTTCAGAAGTTGAAAT+GGG | + | chr2_3:9023155-9023174 | Msa0276760:intron | 20.0% |
!! | GTTAAAATTAATATCCTACT+TGG | - | chr2_3:9023373-9023392 | None:intergenic | 20.0% |
!! | TATGTATCTATATAAGTCAA+TGG | - | chr2_3:9023421-9023440 | None:intergenic | 20.0% |
!!! | ATTTTTCTCAATGAAATCAT+TGG | - | chr2_3:9023817-9023836 | None:intergenic | 20.0% |
!! | TTTCATTGAGAAAAATTCAA+TGG | + | chr2_3:9023821-9023840 | Msa0276760:CDS | 20.0% |
!! | TTCATTGAGAAAAATTCAAT+GGG | + | chr2_3:9023822-9023841 | Msa0276760:CDS | 20.0% |
! | TGCTAAGATAACTAAAGAAT+CGG | + | chr2_3:9022257-9022276 | Msa0276760:CDS | 25.0% |
! | ATGATGATTATTCAAAGAGA+TGG | + | chr2_3:9022442-9022461 | Msa0276760:CDS | 25.0% |
! | ACAATTATATGCAAAGGATA+TGG | + | chr2_3:9022705-9022724 | Msa0276760:intron | 25.0% |
! | TAAATACCTAATACATCCAT+AGG | - | chr2_3:9022795-9022814 | None:intergenic | 25.0% |
! | TGGATGTATTAGGTATTTAT+AGG | + | chr2_3:9022796-9022815 | Msa0276760:intron | 25.0% |
! | ATGTGATAAACGTGATAAAT+TGG | + | chr2_3:9022886-9022905 | Msa0276760:intron | 25.0% |
! | GAAACTTTATACACTATTGA+TGG | + | chr2_3:9023131-9023150 | Msa0276760:intron | 25.0% |
! | ATTAAAACTGATACATCCTT+GGG | - | chr2_3:9023302-9023321 | None:intergenic | 25.0% |
! | AATTAAAACTGATACATCCT+TGG | - | chr2_3:9023303-9023322 | None:intergenic | 25.0% |
!!! | GGAATTAAGAGTATTTACAA+TGG | - | chr2_3:9023352-9023371 | None:intergenic | 25.0% |
! | AAATACTCTTAATTCCAAGT+AGG | + | chr2_3:9023356-9023375 | Msa0276760:intron | 25.0% |
!!! | GGATATTAATTTTAACTCCT+AGG | + | chr2_3:9023377-9023396 | Msa0276760:intron | 25.0% |
!! | TTTTTATGAATTGAATGCCT+AGG | - | chr2_3:9023397-9023416 | None:intergenic | 25.0% |
! | TCTCTCTATATTATCTAATG+AGG | - | chr2_3:9023646-9023665 | None:intergenic | 25.0% |
! | AAAATCCTTGAATACATTGT+TGG | + | chr2_3:9023704-9023723 | Msa0276760:CDS | 25.0% |
!! | GATTGTGATACTTTTATTGA+GGG | + | chr2_3:9023726-9023745 | Msa0276760:CDS | 25.0% |
! | AATATAGATGTGCTAATGTT+TGG | - | chr2_3:9023873-9023892 | None:intergenic | 25.0% |
! | AACATTAGCACATCTATATT+TGG | + | chr2_3:9023873-9023892 | Msa0276760:CDS | 25.0% |
AAAAGTTTACTATTTCCGCA+AGG | + | chr2_3:9021682-9021701 | Msa0276760:intron | 30.0% | |
TTTCAATCCTTGCATTGTAT+CGG | + | chr2_3:9021774-9021793 | Msa0276760:CDS | 30.0% | |
GATAACTAAAGAATCGGTTA+TGG | + | chr2_3:9022263-9022282 | Msa0276760:CDS | 30.0% | |
AGTATTATCCTACGATTGAA+GGG | + | chr2_3:9022328-9022347 | Msa0276760:CDS | 30.0% | |
ATGAAGATTAACTGGAATTG+TGG | + | chr2_3:9022393-9022412 | Msa0276760:CDS | 30.0% | |
! | AAAGAGATGGTCAGTTTTTA+AGG | + | chr2_3:9022455-9022474 | Msa0276760:CDS | 30.0% |
! | AAGAGATGGTCAGTTTTTAA+GGG | + | chr2_3:9022456-9022475 | Msa0276760:CDS | 30.0% |
! | TTAGTAGCTTTGCAATCTAT+AGG | + | chr2_3:9022648-9022667 | Msa0276760:intron | 30.0% |
! | AATCTATGCTCAAGTGATTT+TGG | + | chr2_3:9022741-9022760 | Msa0276760:intron | 30.0% |
! | ATCTATGCTCAAGTGATTTT+GGG | + | chr2_3:9022742-9022761 | Msa0276760:intron | 30.0% |
GTACTATTGAAGATGCTTAA+AGG | - | chr2_3:9023050-9023069 | None:intergenic | 30.0% | |
TGTGGTATGACTCATAAAAA+AGG | - | chr2_3:9023093-9023112 | None:intergenic | 30.0% | |
ATATTATAGGTTAACTGGGA+TGG | + | chr2_3:9023501-9023520 | Msa0276760:intron | 30.0% | |
ACAATCCAACAATGTATTCA+AGG | - | chr2_3:9023712-9023731 | None:intergenic | 30.0% | |
! | GGATTGTGATACTTTTATTG+AGG | + | chr2_3:9023725-9023744 | Msa0276760:CDS | 30.0% |
TTCCAACTCTTTCAATGATA+GGG | + | chr2_3:9023791-9023810 | Msa0276760:CDS | 30.0% | |
TTGAGAAAAATTCAATGGGA+AGG | + | chr2_3:9023826-9023845 | Msa0276760:CDS | 30.0% | |
TTCAAAATGCTATGGTTAAG+AGG | - | chr2_3:9023909-9023928 | None:intergenic | 30.0% | |
GATACAATGCAAGGATTGAA+AGG | - | chr2_3:9021775-9021794 | None:intergenic | 35.0% | |
ACAAAGACTTCATCAGTATG+AGG | - | chr2_3:9021820-9021839 | None:intergenic | 35.0% | |
GAAACAATTTCATCACCTGT+AGG | - | chr2_3:9021913-9021932 | None:intergenic | 35.0% | |
ACCCTATCTGATGCTAATAA+CGG | + | chr2_3:9021949-9021968 | Msa0276760:CDS | 35.0% | |
ACCGTTATTAGCATCAGATA+GGG | - | chr2_3:9021953-9021972 | None:intergenic | 35.0% | |
TCATCTGGAGATATGTTTGT+TGG | + | chr2_3:9022207-9022226 | Msa0276760:CDS | 35.0% | |
! | ATATGTTTGTTGGAATCCGT+CGG | + | chr2_3:9022217-9022236 | Msa0276760:CDS | 35.0% |
AACTAAAGAATCGGTTATGG+CGG | + | chr2_3:9022266-9022285 | Msa0276760:CDS | 35.0% | |
GAGTATTATCCTACGATTGA+AGG | + | chr2_3:9022327-9022346 | Msa0276760:CDS | 35.0% | |
!! | TGAAGGGTTTTGTGATTTTG+TGG | + | chr2_3:9022344-9022363 | Msa0276760:CDS | 35.0% |
AGGATGCAATGAAGATTAAC+TGG | + | chr2_3:9022385-9022404 | Msa0276760:CDS | 35.0% | |
!! | TTCCATAATTTGATGATGCG+TGG | + | chr2_3:9022616-9022635 | Msa0276760:intron | 35.0% |
AACCACGCATCATCAAATTA+TGG | - | chr2_3:9022621-9022640 | None:intergenic | 35.0% | |
GAGAAGTTGAATGAATGTTG+TGG | + | chr2_3:9022937-9022956 | Msa0276760:intron | 35.0% | |
CAAGCAAATGGATAGAAGTA+TGG | - | chr2_3:9023009-9023028 | None:intergenic | 35.0% | |
CTATTGAAGATGCTTAAAGG+AGG | - | chr2_3:9023047-9023066 | None:intergenic | 35.0% | |
TTGGAGCAAGTTAAGTTTGT+AGG | - | chr2_3:9023274-9023293 | None:intergenic | 35.0% | |
TTTGGATTATGTGAGACTTC+AGG | - | chr2_3:9023528-9023547 | None:intergenic | 35.0% | |
AAATTAGTTCAACCTCCCAA+GGG | - | chr2_3:9023557-9023576 | None:intergenic | 35.0% | |
CTGGAAATCTATCATTGGAA+TGG | - | chr2_3:9023673-9023692 | None:intergenic | 35.0% | |
GAATGCTGGAAATCTATCAT+TGG | - | chr2_3:9023678-9023697 | None:intergenic | 35.0% | |
TGTGGAAAAAAGACTGTCTT+GGG | - | chr2_3:9023763-9023782 | None:intergenic | 35.0% | |
CTTCCAACTCTTTCAATGAT+AGG | + | chr2_3:9023790-9023809 | Msa0276760:CDS | 35.0% | |
GAAAAATTCAATGGGAAGGT+TGG | + | chr2_3:9023830-9023849 | Msa0276760:CDS | 35.0% | |
TGAACCAGGATTAACTTCTT+TGG | - | chr2_3:9023973-9023992 | None:intergenic | 35.0% | |
CCAAATAGCATAAATGAACC+AGG | - | chr2_3:9023987-9024006 | None:intergenic | 35.0% | |
CCTGGTTCATTTATGCTATT+TGG | + | chr2_3:9023984-9024003 | Msa0276760:CDS | 35.0% | |
TCATGCAAATTACTTCCAAC+AGG | - | chr2_3:9024023-9024042 | None:intergenic | 35.0% | |
!! | GCCAAATCTTTGGTTCTACA+CGG | - | chr2_3:9021619-9021638 | None:intergenic | 40.0% |
GTGTAGAACCAAAGATTTGG+CGG | + | chr2_3:9021618-9021637 | Msa0276760:intron | 40.0% | |
!! | AGGAATTTTGACAGAGTGTC+CGG | - | chr2_3:9021651-9021670 | None:intergenic | 40.0% |
GACTTCATCAGTATGAGGAT+CGG | - | chr2_3:9021815-9021834 | None:intergenic | 40.0% | |
TGAACACAACCATCAGTGAT+GGG | - | chr2_3:9021859-9021878 | None:intergenic | 40.0% | |
GGTGATGAAATTGTTTCCTC+TGG | + | chr2_3:9021916-9021935 | Msa0276760:CDS | 40.0% | |
! | TAGGGTTAGAGTTTTTCCAG+AGG | - | chr2_3:9021935-9021954 | None:intergenic | 40.0% |
CACCGTTATTAGCATCAGAT+AGG | - | chr2_3:9021954-9021973 | None:intergenic | 40.0% | |
CTATCTGATGCTAATAACGG+TGG | + | chr2_3:9021952-9021971 | Msa0276760:CDS | 40.0% | |
! | TGTTTAGTTTCGAGGTCAAG+CGG | - | chr2_3:9022021-9022040 | None:intergenic | 40.0% |
GTAACAGACAGTTCTTGAGA+TGG | - | chr2_3:9022045-9022064 | None:intergenic | 40.0% | |
TACTCCAATTAGTGGTGATC+AGG | - | chr2_3:9022128-9022147 | None:intergenic | 40.0% | |
CACGAACTTACTCCAATTAG+TGG | - | chr2_3:9022136-9022155 | None:intergenic | 40.0% | |
CACTAATTGGAGTAAGTTCG+TGG | + | chr2_3:9022134-9022153 | Msa0276760:CDS | 40.0% | |
TCACAAAACCCTTCAATCGT+AGG | - | chr2_3:9022339-9022358 | None:intergenic | 40.0% | |
!! | AGGGTTTTGTGATTTTGTGG+TGG | + | chr2_3:9022347-9022366 | Msa0276760:CDS | 40.0% |
GCTTCTCCTATGGATGTATT+AGG | + | chr2_3:9022786-9022805 | Msa0276760:intron | 40.0% | |
! | GATACATCCTTGGGAACTTT+TGG | - | chr2_3:9023293-9023312 | None:intergenic | 40.0% |
ATAATCCAAAGCAAAGCCCT+TGG | + | chr2_3:9023538-9023557 | Msa0276760:CDS | 40.0% | |
TAATCCAAAGCAAAGCCCTT+GGG | + | chr2_3:9023539-9023558 | Msa0276760:CDS | 40.0% | |
GAAATTAGTTCAACCTCCCA+AGG | - | chr2_3:9023558-9023577 | None:intergenic | 40.0% | |
TACAATTGCCCTCAGCAAAA+AGG | + | chr2_3:9023598-9023617 | Msa0276760:CDS | 40.0% | |
! | ACTCTAAGCCTTTTTGCTGA+GGG | - | chr2_3:9023609-9023628 | None:intergenic | 40.0% |
! | AACTCTAAGCCTTTTTGCTG+AGG | - | chr2_3:9023610-9023629 | None:intergenic | 40.0% |
AAAAAGGCTTAGAGTTGCTC+AGG | + | chr2_3:9023614-9023633 | Msa0276760:CDS | 40.0% | |
AAAAGGCTTAGAGTTGCTCA+GGG | + | chr2_3:9023615-9023634 | Msa0276760:CDS | 40.0% | |
!!! | AGGATTTTGCTGTTGAATGC+TGG | - | chr2_3:9023692-9023711 | None:intergenic | 40.0% |
CTGTGGAAAAAAGACTGTCT+TGG | - | chr2_3:9023764-9023783 | None:intergenic | 40.0% | |
!!! | CAAGACAGTCTTTTTTCCAC+AGG | + | chr2_3:9023762-9023781 | Msa0276760:CDS | 40.0% |
CAAAGGGGTTCAAAATGCTA+TGG | - | chr2_3:9023917-9023936 | None:intergenic | 40.0% | |
CGTCAAACTTTGTCTCAAAG+GGG | - | chr2_3:9023932-9023951 | None:intergenic | 40.0% | |
CCGTCAAACTTTGTCTCAAA+GGG | - | chr2_3:9023933-9023952 | None:intergenic | 40.0% | |
!! | CCCTTTGAGACAAAGTTTGA+CGG | + | chr2_3:9023930-9023949 | Msa0276760:CDS | 40.0% |
ACCGTCAAACTTTGTCTCAA+AGG | - | chr2_3:9023934-9023953 | None:intergenic | 40.0% | |
AGCACCAAAGAAGTTAATCC+TGG | + | chr2_3:9023966-9023985 | Msa0276760:CDS | 40.0% | |
GGTAAGATGATACATCCTGT+TGG | + | chr2_3:9024005-9024024 | Msa0276760:CDS | 40.0% | |
TTTGCATGATTCTGCTACCA+AGG | + | chr2_3:9024034-9024053 | Msa0276760:CDS | 40.0% | |
TTGCATGATTCTGCTACCAA+GGG | + | chr2_3:9024035-9024054 | Msa0276760:CDS | 40.0% | |
AAGGGAGAAGATGGTTGTAT+GGG | + | chr2_3:9024053-9024072 | Msa0276760:CDS | 40.0% | |
! | GGAGACATGGCGGAAATATT+TGG | - | chr2_3:9021584-9021603 | None:intergenic | 45.0% |
!! | ATCTTTGGTTCTACACGGCT+GGG | - | chr2_3:9021614-9021633 | None:intergenic | 45.0% |
!! | AATCTTTGGTTCTACACGGC+TGG | - | chr2_3:9021615-9021634 | None:intergenic | 45.0% |
GCCGTGTAGAACCAAAGATT+TGG | + | chr2_3:9021615-9021634 | Msa0276760:intron | 45.0% | |
! | GCATGTTCTAAGTGACCTTG+CGG | - | chr2_3:9021700-9021719 | None:intergenic | 45.0% |
! | TTTCAGTGTTGGGGGGATTA+GGG | - | chr2_3:9021726-9021745 | None:intergenic | 45.0% |
AGGGATAGGGTTTCAGTGTT+GGG | - | chr2_3:9021736-9021755 | None:intergenic | 45.0% | |
AAGGGATAGGGTTTCAGTGT+TGG | - | chr2_3:9021737-9021756 | None:intergenic | 45.0% | |
GAAACCCTATCCCTTCTTGA+TGG | + | chr2_3:9021742-9021761 | Msa0276760:CDS | 45.0% | |
GTGACCATCAAGAAGGGATA+GGG | - | chr2_3:9021749-9021768 | None:intergenic | 45.0% | |
! | CTATCCCTTCTTGATGGTCA+CGG | + | chr2_3:9021748-9021767 | Msa0276760:CDS | 45.0% |
! | AACCATCAGTGATGGGAGTT+AGG | - | chr2_3:9021852-9021871 | None:intergenic | 45.0% |
GTGAACACAACCATCAGTGA+TGG | - | chr2_3:9021860-9021879 | None:intergenic | 45.0% | |
TGTTCACAAACCTCCTACTG+AGG | + | chr2_3:9021873-9021892 | Msa0276760:CDS | 45.0% | |
! | GAGATGGCTGTTTAGTTTCG+AGG | - | chr2_3:9022029-9022048 | None:intergenic | 45.0% |
GACACCTGATCACCACTAAT+TGG | + | chr2_3:9022121-9022140 | Msa0276760:CDS | 45.0% | |
GACGAAAAGAAACTCGTCTG+CGG | + | chr2_3:9022156-9022175 | Msa0276760:CDS | 45.0% | |
ATCCGTCGGCATACTAAGTT+TGG | + | chr2_3:9022231-9022250 | Msa0276760:CDS | 45.0% | |
CACCAAACTTAGTATGCCGA+CGG | - | chr2_3:9022236-9022255 | None:intergenic | 45.0% | |
!!! | TGATTTTGTGGTGGATGCCA+AGG | + | chr2_3:9022356-9022375 | Msa0276760:CDS | 45.0% |
CATTGCATCCTCAACAACCT+TGG | - | chr2_3:9022376-9022395 | None:intergenic | 45.0% | |
!! | CATAGGAGAAGCATCTTCGT+TGG | - | chr2_3:9022778-9022797 | None:intergenic | 45.0% |
CAACGAAGATGCTTCTCCTA+TGG | + | chr2_3:9022776-9022795 | Msa0276760:intron | 45.0% | |
CAAACGGTGAGACAACTTCT+TGG | - | chr2_3:9023182-9023201 | None:intergenic | 45.0% | |
ACTTGCTCCAAAAGTTCCCA+AGG | + | chr2_3:9023283-9023302 | Msa0276760:intron | 45.0% | |
GGCAATTGTAGATTCAGTGC+AGG | - | chr2_3:9023588-9023607 | None:intergenic | 45.0% | |
AGAGTTGGAAGTAGTTCCTG+TGG | - | chr2_3:9023781-9023800 | None:intergenic | 45.0% | |
GGCCCTATCATTGAAAGAGT+TGG | - | chr2_3:9023796-9023815 | None:intergenic | 45.0% | |
!! | TTCTTTGGTGCTGCACTTGT+GGG | - | chr2_3:9023958-9023977 | None:intergenic | 45.0% |
CATACAACCATCTTCTCCCT+TGG | - | chr2_3:9024054-9024073 | None:intergenic | 45.0% | |
CAAGGGAGAAGATGGTTGTA+TGG | + | chr2_3:9024052-9024071 | Msa0276760:CDS | 45.0% | |
! | GTTTCAGTGTTGGGGGGATT+AGG | - | chr2_3:9021727-9021746 | None:intergenic | 50.0% |
! | GATAGGGTTTCAGTGTTGGG+GGG | - | chr2_3:9021733-9021752 | None:intergenic | 50.0% |
! | GGATAGGGTTTCAGTGTTGG+GGG | - | chr2_3:9021734-9021753 | None:intergenic | 50.0% |
GGGATAGGGTTTCAGTGTTG+GGG | - | chr2_3:9021735-9021754 | None:intergenic | 50.0% | |
CGTGACCATCAAGAAGGGAT+AGG | - | chr2_3:9021750-9021769 | None:intergenic | 50.0% | |
AGGACCGTGACCATCAAGAA+GGG | - | chr2_3:9021755-9021774 | None:intergenic | 50.0% | |
AAGGACCGTGACCATCAAGA+AGG | - | chr2_3:9021756-9021775 | None:intergenic | 50.0% | |
TCAACGGCCGATACAATGCA+AGG | - | chr2_3:9021784-9021803 | None:intergenic | 50.0% | |
AGGATCGGCGAGGTAATCAA+CGG | - | chr2_3:9021800-9021819 | None:intergenic | 50.0% | |
CTCCTAACTCCCATCACTGA+TGG | + | chr2_3:9021847-9021866 | Msa0276760:CDS | 50.0% | |
TCTTCACGAACCTCAGTAGG+AGG | - | chr2_3:9021886-9021905 | None:intergenic | 50.0% | |
TCCTACTGAGGTTCGTGAAG+AGG | + | chr2_3:9021885-9021904 | Msa0276760:CDS | 50.0% | |
TCCTCTTCACGAACCTCAGT+AGG | - | chr2_3:9021889-9021908 | None:intergenic | 50.0% | |
GTTCGTGAAGAGGAACCTAC+AGG | + | chr2_3:9021895-9021914 | Msa0276760:CDS | 50.0% | |
ATTGATGTCGCGCAAGAACG+AGG | - | chr2_3:9021991-9022010 | None:intergenic | 50.0% | |
TAGTTTCGAGGTCAAGCGGT+GGG | - | chr2_3:9022017-9022036 | None:intergenic | 50.0% | |
TTAGTTTCGAGGTCAAGCGG+TGG | - | chr2_3:9022018-9022037 | None:intergenic | 50.0% | |
CTGTCTGTTACCGACGTTCA+TGG | + | chr2_3:9022054-9022073 | Msa0276760:CDS | 50.0% | |
CCAGACTTTGCCATGAACGT+CGG | - | chr2_3:9022067-9022086 | None:intergenic | 50.0% | |
CGACGTTCATGGCAAAGTCT+GGG | + | chr2_3:9022065-9022084 | Msa0276760:CDS | 50.0% | |
GTGGTGATCAGGTGTCTCAA+GGG | - | chr2_3:9022117-9022136 | None:intergenic | 50.0% | |
AGTGGTGATCAGGTGTCTCA+AGG | - | chr2_3:9022118-9022137 | None:intergenic | 50.0% | |
TCTCTGCTCCTAATCGTCCA+TGG | + | chr2_3:9022493-9022512 | Msa0276760:CDS | 50.0% | |
TATACCTCAAGCATGCGCCA+TGG | - | chr2_3:9022513-9022532 | None:intergenic | 50.0% | |
!! | TCTTTGGTGCTGCACTTGTG+GGG | - | chr2_3:9023957-9023976 | None:intergenic | 50.0% |
!! | CTTCTTTGGTGCTGCACTTG+TGG | - | chr2_3:9023959-9023978 | None:intergenic | 50.0% |
TCTGCTACCAAGGGAGAAGA+TGG | + | chr2_3:9024044-9024063 | Msa0276760:CDS | 50.0% | |
GAGCAGCACCGCCAAATCTT+TGG | - | chr2_3:9021629-9021648 | None:intergenic | 55.0% | |
!! | AAGATTTGGCGGTGCTGCTC+CGG | + | chr2_3:9021629-9021648 | Msa0276760:intron | 55.0% |
CATCAGTATGAGGATCGGCG+AGG | - | chr2_3:9021810-9021829 | None:intergenic | 55.0% | |
TGTCGCGCAAGAACGAGGTA+CGG | - | chr2_3:9021986-9022005 | None:intergenic | 55.0% | |
CCGACGTTCATGGCAAAGTC+TGG | + | chr2_3:9022064-9022083 | Msa0276760:CDS | 55.0% | |
GAGTTTCGCCATGTCTACCG+TGG | + | chr2_3:9022087-9022106 | Msa0276760:CDS | 55.0% | |
AGGGAGTTCCACGGTAGACA+TGG | - | chr2_3:9022098-9022117 | None:intergenic | 55.0% | |
GGTGTCTCAAGGGAGTTCCA+CGG | - | chr2_3:9022107-9022126 | None:intergenic | 55.0% | |
AGAATCGGTTATGGCGGCAG+CGG | + | chr2_3:9022272-9022291 | Msa0276760:CDS | 55.0% | |
GGTGGATGCCAAGGTTGTTG+AGG | + | chr2_3:9022365-9022384 | Msa0276760:CDS | 55.0% | |
AGCATGCGCCATGGACGATT+AGG | - | chr2_3:9022504-9022523 | None:intergenic | 55.0% | |
TCCAAAGCAAAGCCCTTGGG+AGG | + | chr2_3:9023542-9023561 | Msa0276760:CDS | 55.0% | |
ACCTCCCAAGGGCTTTGCTT+TGG | - | chr2_3:9023546-9023565 | None:intergenic | 55.0% | |
! | GGGTTGTGGTGGAGACATGG+CGG | - | chr2_3:9021594-9021613 | None:intergenic | 60.0% |
! | GCTGGGTTGTGGTGGAGACA+TGG | - | chr2_3:9021597-9021616 | None:intergenic | 60.0% |
TCTACACGGCTGGGTTGTGG+TGG | - | chr2_3:9021605-9021624 | None:intergenic | 60.0% | |
GGTTCTACACGGCTGGGTTG+TGG | - | chr2_3:9021608-9021627 | None:intergenic | 60.0% | |
TCGTCCATGGCGCATGCTTG+AGG | + | chr2_3:9022506-9022525 | Msa0276760:CDS | 60.0% | |
GGTTATGGCGGCAGCGGAGT+TGG | + | chr2_3:9022278-9022297 | Msa0276760:CDS | 65.0% | |
TATGGCGGCAGCGGAGTTGG+CGG | + | chr2_3:9022281-9022300 | Msa0276760:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 9021572 | 9024088 | 9021572 | ID=Msa0276760;Name=Msa0276760 |
chr2_3 | mRNA | 9021572 | 9024088 | 9021572 | ID=Msa0276760-mRNA-1;Parent=Msa0276760;Name=Msa0276760-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|482 |
chr2_3 | exon | 9021572 | 9021617 | 9021572 | ID=Msa0276760-mRNA-1:exon:4126;Parent=Msa0276760-mRNA-1 |
chr2_3 | exon | 9021704 | 9022527 | 9021704 | ID=Msa0276760-mRNA-1:exon:4127;Parent=Msa0276760-mRNA-1 |
chr2_3 | exon | 9023510 | 9024088 | 9023510 | ID=Msa0276760-mRNA-1:exon:4128;Parent=Msa0276760-mRNA-1 |
chr2_3 | CDS | 9021572 | 9021617 | 9021572 | ID=Msa0276760-mRNA-1:cds;Parent=Msa0276760-mRNA-1 |
chr2_3 | CDS | 9021704 | 9022527 | 9021704 | ID=Msa0276760-mRNA-1:cds;Parent=Msa0276760-mRNA-1 |
chr2_3 | CDS | 9023510 | 9024088 | 9023510 | ID=Msa0276760-mRNA-1:cds;Parent=Msa0276760-mRNA-1 |
Gene Sequence |
Protein sequence |