Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277700 | XP_003594312.1 | 97.256 | 328 | 9 | 0 | 1 | 328 | 1 | 328 | 0.0 | 665 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277700 | sp|F4JVA9|SFH2_ARATH | 29.889 | 271 | 173 | 7 | 1 | 259 | 60 | 325 | 1.64e-21 | 98.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277700 | Q2HV32 | 97.256 | 328 | 9 | 0 | 1 | 328 | 1 | 328 | 0.0 | 665 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0239520 | Msa0277700 | 0.850092 | 2.122894e-60 | -8.615850e-47 |
| Msa0277700 | Msa0317400 | 0.825216 | 5.291257e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277700 | MtrunA17_Chr2g0290661 | 97.256 | 328 | 9 | 0 | 1 | 328 | 1 | 328 | 0.0 | 665 |
| Msa0277700 | MtrunA17_Chr4g0076441 | 81.107 | 307 | 58 | 0 | 7 | 313 | 2 | 308 | 0.0 | 528 |
| Msa0277700 | MtrunA17_Chr3g0102691 | 68.210 | 324 | 99 | 3 | 7 | 327 | 2 | 324 | 1.24e-168 | 473 |
| Msa0277700 | MtrunA17_Chr4g0075941 | 81.818 | 165 | 30 | 0 | 7 | 171 | 2 | 166 | 3.75e-96 | 282 |
| Msa0277700 | MtrunA17_Chr3g0144891 | 29.437 | 231 | 151 | 4 | 39 | 259 | 98 | 326 | 1.34e-20 | 92.4 |
| Msa0277700 | MtrunA17_Chr4g0035361 | 28.571 | 231 | 153 | 4 | 39 | 259 | 2 | 230 | 1.76e-20 | 91.7 |
| Msa0277700 | MtrunA17_Chr8g0369291 | 31.092 | 238 | 141 | 6 | 38 | 259 | 90 | 320 | 1.03e-19 | 89.7 |
| Msa0277700 | MtrunA17_Chr7g0236461 | 27.306 | 271 | 167 | 6 | 38 | 295 | 100 | 353 | 1.17e-19 | 89.7 |
| Msa0277700 | MtrunA17_Chr5g0399151 | 29.048 | 210 | 141 | 3 | 38 | 241 | 115 | 322 | 2.04e-19 | 88.6 |
| Msa0277700 | MtrunA17_Chr3g0144911 | 27.490 | 251 | 150 | 7 | 13 | 246 | 93 | 328 | 7.41e-19 | 86.7 |
| Msa0277700 | MtrunA17_Chr5g0404711 | 28.333 | 240 | 136 | 6 | 39 | 256 | 77 | 302 | 9.63e-18 | 83.6 |
| Msa0277700 | MtrunA17_Chr8g0372651 | 27.632 | 228 | 153 | 4 | 39 | 256 | 80 | 305 | 1.27e-17 | 83.6 |
| Msa0277700 | MtrunA17_Chr1g0155521 | 29.108 | 213 | 135 | 4 | 39 | 241 | 113 | 319 | 3.72e-17 | 82.4 |
| Msa0277700 | MtrunA17_Chr4g0035391 | 28.085 | 235 | 153 | 5 | 13 | 241 | 90 | 314 | 4.45e-17 | 82.0 |
| Msa0277700 | MtrunA17_Chr3g0141821 | 28.169 | 213 | 137 | 5 | 39 | 241 | 94 | 300 | 2.17e-16 | 80.1 |
| Msa0277700 | MtrunA17_Chr3g0080051 | 27.897 | 233 | 155 | 5 | 38 | 259 | 102 | 332 | 9.65e-16 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277700 | AT5G47730.4 | 74.613 | 323 | 80 | 1 | 1 | 323 | 1 | 321 | 0.0 | 507 |
| Msa0277700 | AT5G47730.1 | 74.613 | 323 | 80 | 1 | 1 | 323 | 1 | 321 | 0.0 | 507 |
| Msa0277700 | AT1G55840.1 | 66.978 | 321 | 105 | 1 | 1 | 320 | 1 | 321 | 2.42e-173 | 484 |
| Msa0277700 | AT1G55840.2 | 70.307 | 293 | 86 | 1 | 29 | 320 | 2 | 294 | 1.92e-164 | 460 |
| Msa0277700 | AT5G47730.2 | 77.239 | 268 | 59 | 1 | 56 | 323 | 1 | 266 | 3.84e-153 | 431 |
| Msa0277700 | AT5G47730.3 | 77.239 | 268 | 59 | 1 | 56 | 323 | 1 | 266 | 3.84e-153 | 431 |
| Msa0277700 | AT4G39180.1 | 29.889 | 271 | 173 | 7 | 1 | 259 | 60 | 325 | 1.67e-22 | 98.6 |
| Msa0277700 | AT4G39180.3 | 29.889 | 271 | 173 | 7 | 1 | 259 | 60 | 325 | 1.75e-22 | 98.6 |
| Msa0277700 | AT4G39180.2 | 29.889 | 271 | 173 | 7 | 1 | 259 | 60 | 325 | 1.75e-22 | 98.6 |
| Msa0277700 | AT3G24840.1 | 30.172 | 232 | 150 | 4 | 38 | 259 | 103 | 332 | 4.96e-22 | 97.1 |
| Msa0277700 | AT3G24840.6 | 30.172 | 232 | 150 | 4 | 38 | 259 | 103 | 332 | 4.96e-22 | 97.1 |
| Msa0277700 | AT3G24840.4 | 30.172 | 232 | 150 | 4 | 38 | 259 | 103 | 332 | 4.96e-22 | 97.1 |
| Msa0277700 | AT3G24840.2 | 30.172 | 232 | 150 | 4 | 38 | 259 | 103 | 332 | 4.96e-22 | 97.1 |
| Msa0277700 | AT3G24840.7 | 30.172 | 232 | 150 | 4 | 38 | 259 | 103 | 332 | 4.97e-22 | 97.1 |
| Msa0277700 | AT3G24840.3 | 30.172 | 232 | 150 | 4 | 38 | 259 | 103 | 332 | 4.97e-22 | 97.1 |
| Msa0277700 | AT3G24840.5 | 30.172 | 232 | 150 | 4 | 38 | 259 | 103 | 332 | 4.97e-22 | 97.1 |
| Msa0277700 | AT2G21540.3 | 28.727 | 275 | 171 | 8 | 1 | 259 | 59 | 324 | 4.06e-21 | 94.4 |
| Msa0277700 | AT2G21540.5 | 28.727 | 275 | 171 | 8 | 1 | 259 | 59 | 324 | 4.06e-21 | 94.4 |
| Msa0277700 | AT2G21540.6 | 28.727 | 275 | 171 | 8 | 1 | 259 | 59 | 324 | 4.65e-21 | 94.4 |
| Msa0277700 | AT2G21540.2 | 28.727 | 275 | 171 | 8 | 1 | 259 | 59 | 324 | 4.65e-21 | 94.4 |
| Msa0277700 | AT2G21540.1 | 28.727 | 275 | 171 | 8 | 1 | 259 | 59 | 324 | 4.65e-21 | 94.4 |
| Msa0277700 | AT2G21540.4 | 28.727 | 275 | 171 | 8 | 1 | 259 | 59 | 324 | 4.65e-21 | 94.4 |
| Msa0277700 | AT4G34580.2 | 29.183 | 257 | 162 | 6 | 13 | 259 | 71 | 317 | 6.00e-21 | 94.0 |
| Msa0277700 | AT4G34580.1 | 29.183 | 257 | 162 | 6 | 13 | 259 | 71 | 317 | 6.00e-21 | 94.0 |
| Msa0277700 | AT2G18180.1 | 29.362 | 235 | 146 | 5 | 39 | 259 | 82 | 310 | 7.55e-20 | 90.5 |
| Msa0277700 | AT2G18180.2 | 29.362 | 235 | 146 | 5 | 39 | 259 | 82 | 310 | 7.73e-20 | 90.5 |
| Msa0277700 | AT2G18180.4 | 29.237 | 236 | 147 | 5 | 38 | 259 | 10 | 239 | 1.10e-19 | 89.7 |
| Msa0277700 | AT2G18180.3 | 29.237 | 236 | 147 | 5 | 38 | 259 | 10 | 239 | 1.12e-19 | 90.1 |
| Msa0277700 | AT4G36490.1 | 28.947 | 228 | 150 | 4 | 39 | 256 | 79 | 304 | 1.64e-19 | 89.7 |
| Msa0277700 | AT5G47510.2 | 28.511 | 235 | 152 | 6 | 21 | 241 | 26 | 258 | 3.00e-19 | 87.4 |
| Msa0277700 | AT5G47510.1 | 28.511 | 235 | 152 | 6 | 21 | 241 | 25 | 257 | 4.03e-19 | 87.4 |
| Msa0277700 | AT5G47510.4 | 28.016 | 257 | 165 | 7 | 21 | 259 | 26 | 280 | 4.18e-19 | 87.4 |
| Msa0277700 | AT2G16380.2 | 27.542 | 236 | 149 | 5 | 39 | 259 | 89 | 317 | 5.01e-19 | 88.2 |
| Msa0277700 | AT2G16380.1 | 27.542 | 236 | 149 | 5 | 39 | 259 | 89 | 317 | 5.01e-19 | 88.2 |
| Msa0277700 | AT2G21520.2 | 28.440 | 218 | 130 | 4 | 39 | 241 | 115 | 321 | 3.67e-18 | 85.9 |
| Msa0277700 | AT2G21520.3 | 28.440 | 218 | 130 | 4 | 39 | 241 | 115 | 321 | 3.67e-18 | 85.9 |
| Msa0277700 | AT2G21520.1 | 28.440 | 218 | 130 | 4 | 39 | 241 | 111 | 317 | 4.45e-18 | 85.5 |
| Msa0277700 | AT1G19650.2 | 28.755 | 233 | 154 | 5 | 34 | 256 | 28 | 258 | 4.90e-17 | 82.0 |
| Msa0277700 | AT4G39170.2 | 27.869 | 244 | 157 | 7 | 9 | 241 | 80 | 315 | 5.79e-17 | 82.0 |
| Msa0277700 | AT4G39170.1 | 27.869 | 244 | 157 | 7 | 9 | 241 | 80 | 315 | 6.13e-17 | 82.0 |
| Msa0277700 | AT1G19650.3 | 28.509 | 228 | 151 | 5 | 39 | 256 | 105 | 330 | 7.02e-17 | 81.6 |
| Msa0277700 | AT1G19650.1 | 28.509 | 228 | 151 | 5 | 39 | 256 | 105 | 330 | 8.04e-17 | 81.6 |
| Msa0277700 | AT5G56160.2 | 28.448 | 232 | 153 | 6 | 39 | 259 | 95 | 324 | 1.10e-15 | 78.2 |
| Msa0277700 | AT5G56160.1 | 28.448 | 232 | 153 | 6 | 39 | 259 | 95 | 324 | 1.39e-15 | 77.8 |
| Msa0277700 | AT5G56160.3 | 28.448 | 232 | 153 | 6 | 39 | 259 | 95 | 324 | 1.39e-15 | 77.8 |
| Msa0277700 | AT1G75370.2 | 26.407 | 231 | 158 | 4 | 39 | 259 | 114 | 342 | 1.71e-15 | 77.8 |
| Msa0277700 | AT1G75370.1 | 26.407 | 231 | 158 | 4 | 39 | 259 | 114 | 342 | 2.00e-15 | 77.4 |
| Msa0277700 | AT5G47510.3 | 27.232 | 224 | 151 | 5 | 46 | 259 | 2 | 223 | 2.03e-15 | 76.3 |
| Msa0277700 | AT1G55690.3 | 29.204 | 226 | 149 | 5 | 38 | 256 | 101 | 322 | 9.59e-15 | 75.5 |
| Msa0277700 | AT1G55690.2 | 29.204 | 226 | 149 | 5 | 38 | 256 | 101 | 322 | 1.14e-14 | 75.1 |
| Msa0277700 | AT1G55690.4 | 29.204 | 226 | 149 | 5 | 38 | 256 | 101 | 322 | 1.14e-14 | 75.1 |
| Msa0277700 | AT1G55690.1 | 29.204 | 226 | 149 | 5 | 38 | 256 | 101 | 322 | 1.14e-14 | 75.1 |
| Msa0277700 | AT1G55690.5 | 29.204 | 226 | 149 | 5 | 38 | 256 | 101 | 322 | 1.14e-14 | 75.1 |
| Msa0277700 | AT2G18180.5 | 29.944 | 177 | 114 | 3 | 93 | 259 | 36 | 212 | 1.14e-14 | 74.7 |
| Msa0277700 | AT2G16380.3 | 26.484 | 219 | 139 | 5 | 56 | 259 | 1 | 212 | 1.55e-13 | 71.6 |
| Msa0277700 | AT1G01630.1 | 26.389 | 216 | 139 | 7 | 28 | 239 | 41 | 240 | 6.38e-12 | 65.1 |
Find 98 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCACTTCAGAAAACATTTC+AGG | 0.208871 | 2_3:+10474878 | Msa0277700:CDS |
| TTTCGTATCTTCATTCATTC+TGG | 0.215280 | 2_3:-10478778 | None:intergenic |
| TATAGATCTGGAGGGATTAT+TGG | 0.234508 | 2_3:-10475988 | None:intergenic |
| TTAGTTAGTTTCATAAATTT+AGG | 0.236031 | 2_3:+10479078 | Msa0277700:three_prime_UTR |
| TACAACATGTGTGAAGGTTT+TGG | 0.265335 | 2_3:+10477295 | Msa0277700:CDS |
| ACCTTCACACATGTTGTAAT+AGG | 0.265485 | 2_3:-10477290 | None:intergenic |
| GTTACACCTTCGTATTTATC+AGG | 0.279976 | 2_3:+10479040 | Msa0277700:three_prime_UTR |
| TGTGGTTTCTTCTCTATGTT+TGG | 0.292849 | 2_3:+10479190 | Msa0277700:three_prime_UTR |
| TGCTTCAAAGGCACATAAAA+TGG | 0.293424 | 2_3:+10475553 | Msa0277700:CDS |
| TCAACGGTGTCTTCACCTTC+TGG | 0.304827 | 2_3:+10478950 | Msa0277700:three_prime_UTR |
| AAATAATTAAGAAAACTTAT+AGG | 0.315780 | 2_3:-10478986 | None:intergenic |
| CCTGTCTTTGCAATTGGTGT+TGG | 0.322928 | 2_3:+10476928 | Msa0277700:CDS |
| CTGTCTTTGCAATTGGTGTT+GGG | 0.324442 | 2_3:+10476929 | Msa0277700:CDS |
| GTCAGCTCTGAATCAGATTA+AGG | 0.332818 | 2_3:+10477337 | Msa0277700:CDS |
| TAATAAGTATTTGTCTTCTC+AGG | 0.333195 | 2_3:-10477632 | None:intergenic |
| ACTCCCACTACCCGAGTGTT+TGG | 0.355591 | 2_3:-10478691 | None:intergenic |
| TAGTTAGTTTCATAAATTTA+GGG | 0.355670 | 2_3:+10479079 | Msa0277700:three_prime_UTR |
| AAAGTAGAGATGAAAATAAA+AGG | 0.356262 | 2_3:-10474512 | None:intergenic |
| CCATCATCGGCAGCAGGTTC+AGG | 0.364690 | 2_3:-10478834 | None:intergenic |
| CAACAACCTGAAAATATGTA+TGG | 0.370791 | 2_3:-10477668 | None:intergenic |
| CAAAATGGGGATTGTCTCTC+AGG | 0.375477 | 2_3:+10474695 | Msa0277700:exon |
| TGAGATAGACAAAATATTAT+CGG | 0.377453 | 2_3:+10475722 | Msa0277700:CDS |
| AGAACTCTACGACTACATTA+AGG | 0.379460 | 2_3:+10478749 | Msa0277700:CDS |
| GGCCTGCCTGTCTTTGCAAT+TGG | 0.380598 | 2_3:+10476922 | Msa0277700:CDS |
| TGGAAAGATCCCTGCTTGAT+TGG | 0.395332 | 2_3:-10478801 | None:intergenic |
| TCTCAACTCATAGGATTGTC+AGG | 0.397183 | 2_3:+10476027 | Msa0277700:CDS |
| TGAGAGCCTGAAGTTGGTTA+AGG | 0.402830 | 2_3:-10474722 | None:intergenic |
| TGTAGTCGTAGAGTTCTTGA+TGG | 0.410837 | 2_3:-10478743 | None:intergenic |
| TGTGAGACTGAACATAATAA+TGG | 0.417738 | 2_3:-10477102 | None:intergenic |
| CTAGTCCTCTCTTGTAAAAG+TGG | 0.425139 | 2_3:-10477840 | None:intergenic |
| CCTTCACACATGTTGTAATA+GGG | 0.428167 | 2_3:-10477289 | None:intergenic |
| GGATGCCCTTAACCAACTTC+AGG | 0.433838 | 2_3:+10474716 | Msa0277700:CDS |
| CTGTGTAAAGACACAGTAAC+AGG | 0.435129 | 2_3:-10474549 | None:intergenic |
| CCTGAACCTGCTGCCGATGA+TGG | 0.441897 | 2_3:+10478834 | Msa0277700:CDS |
| ATTAAGAAAACTTATAGGAT+TGG | 0.449957 | 2_3:-10478981 | None:intergenic |
| CGCACACCTCTATATAGATC+TGG | 0.455110 | 2_3:-10476000 | None:intergenic |
| AGTTGATTGATAGTTTGAAC+TGG | 0.457873 | 2_3:+10475688 | Msa0277700:intron |
| GAGTGAAAATTGCTATTCCT+TGG | 0.463889 | 2_3:+10478710 | Msa0277700:CDS |
| GAGAGCCTGAAGTTGGTTAA+GGG | 0.477716 | 2_3:-10474721 | None:intergenic |
| GTGCGTGATTCTCAACTCAT+AGG | 0.478305 | 2_3:+10476018 | Msa0277700:CDS |
| TACAACAACAAAGGATTGGT+TGG | 0.479331 | 2_3:-10479012 | None:intergenic |
| TTTGTACAACAACAAAGGAT+TGG | 0.480635 | 2_3:-10479016 | None:intergenic |
| CTCTGGATCATCCAAACACT+CGG | 0.480807 | 2_3:+10478680 | Msa0277700:CDS |
| ATGTAACTGAAACCTTGATT+CGG | 0.484290 | 2_3:+10475507 | Msa0277700:CDS |
| GATCTATGAGAGCCTGAAGT+TGG | 0.490051 | 2_3:-10474728 | None:intergenic |
| TCATCCAAACACTCGGGTAG+TGG | 0.491876 | 2_3:+10478687 | Msa0277700:CDS |
| ATATCGTGATCGTGTAATCT+TGG | 0.498359 | 2_3:+10477138 | Msa0277700:CDS |
| GTGCAAGTCTTACAAGGCTG+TGG | 0.503529 | 2_3:+10477870 | Msa0277700:CDS |
| ATTTCTCCATCATCGGCAGC+AGG | 0.503769 | 2_3:-10478840 | None:intergenic |
| TGCTTTCAGAAACCGAATCA+AGG | 0.505557 | 2_3:-10475519 | None:intergenic |
| ATCCCTCCAGATCTATATAG+AGG | 0.514400 | 2_3:+10475994 | Msa0277700:CDS |
| TCATAAATTTAGGGAATAGT+CGG | 0.517602 | 2_3:+10479088 | Msa0277700:three_prime_UTR |
| CATCTCCGACTCTATAGTCT+TGG | 0.525279 | 2_3:-10478865 | None:intergenic |
| GGTTTCTGAAAGCAAGGGAA+TGG | 0.525303 | 2_3:+10475528 | Msa0277700:CDS |
| AGGGTAGTTCAGATCATCAA+TGG | 0.526588 | 2_3:-10477612 | None:intergenic |
| GTCGTAGAGTTCTTGATGGA+AGG | 0.530137 | 2_3:-10478739 | None:intergenic |
| CCTTGCTTCTTCGATGCAGA+AGG | 0.533845 | 2_3:-10477263 | None:intergenic |
| ACTTTACTATTATTACTATG+TGG | 0.534472 | 2_3:+10479172 | Msa0277700:three_prime_UTR |
| AAGGGAATGGAATGCTTCAA+AGG | 0.536440 | 2_3:+10475541 | Msa0277700:CDS |
| AACAACCTGAAAATATGTAT+GGG | 0.537851 | 2_3:-10477667 | None:intergenic |
| CCAACACCAATTGCAAAGAC+AGG | 0.538306 | 2_3:-10476928 | None:intergenic |
| CTTGGCAATTTCTCCATCAT+CGG | 0.538362 | 2_3:-10478847 | None:intergenic |
| AGCCATGGGAATGTGATTGA+TGG | 0.540123 | 2_3:+10478903 | Msa0277700:CDS |
| CTTCAGGCTCTCATAGATCA+AGG | 0.542568 | 2_3:+10474732 | Msa0277700:CDS |
| CACAAGTTTGAGAACAGCCA+TGG | 0.545999 | 2_3:+10478888 | Msa0277700:CDS |
| AATCCTTTGTTGTTGTACAA+AGG | 0.546984 | 2_3:+10479018 | Msa0277700:three_prime_UTR |
| ATTTATGAGTTAATTGTCAA+CGG | 0.547363 | 2_3:+10478934 | Msa0277700:three_prime_UTR |
| TCGTAGAGTTCTTGATGGAA+GGG | 0.547859 | 2_3:-10478738 | None:intergenic |
| TACTTGCAGAATGTTCATCA+AGG | 0.549294 | 2_3:+10475482 | Msa0277700:intron |
| AGATACGAAACCAATCAAGC+AGG | 0.555385 | 2_3:+10478791 | Msa0277700:CDS |
| CCCTATTACAACATGTGTGA+AGG | 0.558981 | 2_3:+10477289 | Msa0277700:CDS |
| CATCCAAACACTCGGGTAGT+GGG | 0.564933 | 2_3:+10478688 | Msa0277700:CDS |
| CACCAATTGCAAAGACAGGC+AGG | 0.565402 | 2_3:-10476924 | None:intergenic |
| TGATTCGGTTTCTGAAAGCA+AGG | 0.571047 | 2_3:+10475522 | Msa0277700:CDS |
| AATAAGTATTTGTCTTCTCA+GGG | 0.572204 | 2_3:-10477631 | None:intergenic |
| TGATTGATAGTTTGAACTGG+AGG | 0.575502 | 2_3:+10475691 | Msa0277700:CDS |
| CGTAGAGTTCTTGATGGAAG+GGG | 0.578262 | 2_3:-10478737 | None:intergenic |
| TGCAAGTCTTACAAGGCTGT+GGG | 0.587027 | 2_3:+10477871 | Msa0277700:CDS |
| GATTCGGTTTCTGAAAGCAA+GGG | 0.593415 | 2_3:+10475523 | Msa0277700:CDS |
| TTGATGGAAGGGGTGATCCA+AGG | 0.596882 | 2_3:-10478727 | None:intergenic |
| TAACCTTTGTACAACAACAA+AGG | 0.603310 | 2_3:-10479021 | None:intergenic |
| GATACGAAACCAATCAAGCA+GGG | 0.614789 | 2_3:+10478792 | Msa0277700:CDS |
| ACACCTCTATATAGATCTGG+AGG | 0.616034 | 2_3:-10475997 | None:intergenic |
| GATTGATAGTTTGAACTGGA+GGG | 0.619800 | 2_3:+10475692 | Msa0277700:CDS |
| CAGGTTCAGGAAATTCAACA+TGG | 0.620141 | 2_3:-10478821 | None:intergenic |
| TGGGCGAGATGAGCTGCTGA+AGG | 0.621337 | 2_3:+10477890 | Msa0277700:CDS |
| AACCATCAATCACATTCCCA+TGG | 0.627533 | 2_3:-10478905 | None:intergenic |
| AATTGCCAAGACTATAGAGT+CGG | 0.634645 | 2_3:+10478860 | Msa0277700:CDS |
| CTCAACTCATAGGATTGTCA+GGG | 0.644258 | 2_3:+10476028 | Msa0277700:CDS |
| CCTTCTGCATCGAAGAAGCA+AGG | 0.647634 | 2_3:+10477263 | Msa0277700:CDS |
| ACACAATGCAAAGCTCGTAA+CGG | 0.650661 | 2_3:-10479118 | None:intergenic |
| ACAAGTTTGAGAACAGCCAT+GGG | 0.655199 | 2_3:+10478889 | Msa0277700:CDS |
| ACACAGACACAGTGAAACAC+AGG | 0.659073 | 2_3:+10474566 | Msa0277700:five_prime_UTR |
| TCTGGATCATCCAAACACTC+GGG | 0.660259 | 2_3:+10478681 | Msa0277700:CDS |
| ATTGTCAGGGTACTCAAGAG+AGG | 0.668401 | 2_3:+10476041 | Msa0277700:CDS |
| ACAACCTGAAAATATGTATG+GGG | 0.668972 | 2_3:-10477666 | None:intergenic |
| CACCTCTATATAGATCTGGA+GGG | 0.669545 | 2_3:-10475996 | None:intergenic |
| CAGAATCCTGATAAATACGA+AGG | 0.670487 | 2_3:-10479046 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTAAATTTTTTATTAT+TGG | + | chr2_3:10477926-10477945 | Msa0277700:intron | 0.0% |
| !! | ATAAAATGGTATAATATTTA+TGG | + | chr2_3:10475567-10475586 | Msa0277700:intron | 10.0% |
| !!! | TATTGTTTATATATTTCTTT+TGG | + | chr2_3:10475775-10475794 | Msa0277700:intron | 10.0% |
| !!! | ATTATATTTTATATGTGATT+GGG | - | chr2_3:10476227-10476246 | None:intergenic | 10.0% |
| !!! | ATTAAATTTTTTATTATTGG+AGG | + | chr2_3:10477929-10477948 | Msa0277700:intron | 10.0% |
| !!! | TTTTATTTTTGTTATAGAAA+TGG | + | chr2_3:10478322-10478341 | Msa0277700:intron | 10.0% |
| !! | AAACAAATAACAATATATTA+AGG | - | chr2_3:10478585-10478604 | None:intergenic | 10.0% |
| !! | AAATAATTAAGAAAACTTAT+AGG | - | chr2_3:10478989-10479008 | None:intergenic | 10.0% |
| !!! | AAAATCTAGTGTTTTTTTTA+AGG | + | chr2_3:10474641-10474660 | Msa0277700:five_prime_UTR | 15.0% |
| !! | AAAAAGAAAAACTCAATAAA+GGG | - | chr2_3:10474837-10474856 | None:intergenic | 15.0% |
| !! | AAAAAAGAAAAACTCAATAA+AGG | - | chr2_3:10474838-10474857 | None:intergenic | 15.0% |
| !!! | CATTCCTTTTTTATATTTAT+TGG | + | chr2_3:10475883-10475902 | Msa0277700:intron | 15.0% |
| !! | TTTGCCAATAAATATAAAAA+AGG | - | chr2_3:10475890-10475909 | None:intergenic | 15.0% |
| !!! | GATTATATTTTATATGTGAT+TGG | - | chr2_3:10476228-10476247 | None:intergenic | 15.0% |
| !! | TCACATATAAAATATAATCT+AGG | + | chr2_3:10476229-10476248 | Msa0277700:intron | 15.0% |
| !! | CACATATAAAATATAATCTA+GGG | + | chr2_3:10476230-10476249 | Msa0277700:intron | 15.0% |
| !!! | AAATTTTATAAACATTACAC+GGG | - | chr2_3:10476533-10476552 | None:intergenic | 15.0% |
| !!! | CAAATTTTATAAACATTACA+CGG | - | chr2_3:10476534-10476553 | None:intergenic | 15.0% |
| !! | GTGTAATGTTTATAAAATTT+GGG | + | chr2_3:10476533-10476552 | Msa0277700:intron | 15.0% |
| !!! | TTTGAACAATTTTACATTTT+AGG | + | chr2_3:10476701-10476720 | Msa0277700:intron | 15.0% |
| !! | TAAGTTTCATTTATTAGAAA+GGG | + | chr2_3:10476977-10476996 | Msa0277700:intron | 15.0% |
| !! | TTTATTTGTTCATACAATAA+CGG | - | chr2_3:10477488-10477507 | None:intergenic | 15.0% |
| !!! | TTAGTTAGTTTCATAAATTT+AGG | + | chr2_3:10479078-10479097 | Msa0277700:three_prime_UTR | 15.0% |
| !!! | TAGTTAGTTTCATAAATTTA+GGG | + | chr2_3:10479079-10479098 | Msa0277700:three_prime_UTR | 15.0% |
| !! | TGAATATGATTAACTGAAAA+TGG | - | chr2_3:10474913-10474932 | None:intergenic | 20.0% |
| !! | AGATTCAAACTTTATAATGT+TGG | - | chr2_3:10474943-10474962 | None:intergenic | 20.0% |
| !!! | TTTATTATGTTTTTGCTACT+TGG | + | chr2_3:10474972-10474991 | Msa0277700:intron | 20.0% |
| !!! | TTATTATGTTTTTGCTACTT+GGG | + | chr2_3:10474973-10474992 | Msa0277700:intron | 20.0% |
| !!! | TGACAATTTATGTTCTTTTT+TGG | + | chr2_3:10475037-10475056 | Msa0277700:intron | 20.0% |
| !!! | ATGACTTAAATTTTCTGATA+TGG | + | chr2_3:10475383-10475402 | Msa0277700:intron | 20.0% |
| !!! | TTAAATTTTCTGATATGGTT+TGG | + | chr2_3:10475388-10475407 | Msa0277700:intron | 20.0% |
| !! | TGAGATAGACAAAATATTAT+CGG | + | chr2_3:10475722-10475741 | Msa0277700:CDS | 20.0% |
| !! | AAACAATAATCTACAAGTAT+CGG | - | chr2_3:10475763-10475782 | None:intergenic | 20.0% |
| !!! | TGTCATTTAATAGATAAACA+TGG | - | chr2_3:10475922-10475941 | None:intergenic | 20.0% |
| !! | CGTGTAATGTTTATAAAATT+TGG | + | chr2_3:10476532-10476551 | Msa0277700:intron | 20.0% |
| !!! | AGAAATTGAGTTTTTATAGA+GGG | - | chr2_3:10476601-10476620 | None:intergenic | 20.0% |
| !!! | TAGAAATTGAGTTTTTATAG+AGG | - | chr2_3:10476602-10476621 | None:intergenic | 20.0% |
| !!! | AACAATTTTACATTTTAGGT+AGG | + | chr2_3:10476705-10476724 | Msa0277700:intron | 20.0% |
| !! | GTAAGTTTCATTTATTAGAA+AGG | + | chr2_3:10476976-10476995 | Msa0277700:intron | 20.0% |
| !! | AAGTTTCATTTATTAGAAAG+GGG | + | chr2_3:10476978-10476997 | Msa0277700:intron | 20.0% |
| !! | CATAAAATATCCAAAAAGAA+AGG | - | chr2_3:10477542-10477561 | None:intergenic | 20.0% |
| !!! | TTTTCTTACTATATTAGCTT+AGG | + | chr2_3:10477738-10477757 | Msa0277700:intron | 20.0% |
| !! | TGTTTAATATTATTATCTCG+AGG | - | chr2_3:10477797-10477816 | None:intergenic | 20.0% |
| !!! | TTTATTTTCATAAACTTTCC+AGG | + | chr2_3:10478250-10478269 | Msa0277700:intron | 20.0% |
| !! | TTTCACTGAAATTATCAAAA+GGG | + | chr2_3:10478461-10478480 | Msa0277700:intron | 20.0% |
| !!! | CTTGAATTTGACTAAAATTT+TGG | + | chr2_3:10478606-10478625 | Msa0277700:intron | 20.0% |
| !! | ATTTATGAGTTAATTGTCAA+CGG | + | chr2_3:10478934-10478953 | Msa0277700:three_prime_UTR | 20.0% |
| !! | ATTAAGAAAACTTATAGGAT+TGG | - | chr2_3:10478984-10479003 | None:intergenic | 20.0% |
| !! | ACTTTACTATTATTACTATG+TGG | + | chr2_3:10479172-10479191 | Msa0277700:three_prime_UTR | 20.0% |
| !! | GTAACAAAAAAAAATGCAAA+AGG | - | chr2_3:10479216-10479235 | None:intergenic | 20.0% |
| !!! | CATTTTTTTTTGTTACTATG+TGG | + | chr2_3:10479220-10479239 | Msa0277700:three_prime_UTR | 20.0% |
| !!! | ACACTAGATTTTGTTTTTCT+AGG | - | chr2_3:10474633-10474652 | None:intergenic | 25.0% |
| !! | TTCTTAGATTTTGTGTATGA+TGG | + | chr2_3:10475085-10475104 | Msa0277700:intron | 25.0% |
| !! | GCATTTTTCTATCAATGTTT+TGG | + | chr2_3:10475184-10475203 | Msa0277700:intron | 25.0% |
| !!! | TGTTTTGGATATTTAACCTA+TGG | + | chr2_3:10475199-10475218 | Msa0277700:intron | 25.0% |
| !!! | AATTTGTTGTTCAATCAATG+TGG | + | chr2_3:10475250-10475269 | Msa0277700:intron | 25.0% |
| ! | TAACTAAAAATGTCACAATC+AGG | - | chr2_3:10475853-10475872 | None:intergenic | 25.0% |
| ! | CTGAAAATAAATCAAAATCC+AGG | - | chr2_3:10475965-10475984 | None:intergenic | 25.0% |
| !! | TTGTACTCAAAAGTATATGT+TGG | + | chr2_3:10476106-10476125 | Msa0277700:intron | 25.0% |
| !!! | AATCAGAGTTTTAACAACAT+CGG | - | chr2_3:10476156-10476175 | None:intergenic | 25.0% |
| !! | ATTTTATATGTGATTGGGAT+TGG | - | chr2_3:10476222-10476241 | None:intergenic | 25.0% |
| ! | TAACAGTTACATAGGAATAT+AGG | + | chr2_3:10476285-10476304 | Msa0277700:intron | 25.0% |
| ! | CTAACTGAACATTATAAAAC+TGG | - | chr2_3:10476577-10476596 | None:intergenic | 25.0% |
| !!! | CAGTTTTATAATGTTCAGTT+AGG | + | chr2_3:10476575-10476594 | Msa0277700:intron | 25.0% |
| ! | GTATGAACAAATAAATAGAG+CGG | + | chr2_3:10477493-10477512 | Msa0277700:intron | 25.0% |
| !!! | ACTTTGTTTTCCTTTCTTTT+TGG | + | chr2_3:10477529-10477548 | Msa0277700:intron | 25.0% |
| ! | AATAAGTATTTGTCTTCTCA+GGG | - | chr2_3:10477634-10477653 | None:intergenic | 25.0% |
| ! | TAATAAGTATTTGTCTTCTC+AGG | - | chr2_3:10477635-10477654 | None:intergenic | 25.0% |
| ! | AACAACCTGAAAATATGTAT+GGG | - | chr2_3:10477670-10477689 | None:intergenic | 25.0% |
| !!! | TCAAGATAAAGTTTTATGCA+AGG | - | chr2_3:10478100-10478119 | None:intergenic | 25.0% |
| ! | CAAACATAGTCTACTTTAAA+AGG | - | chr2_3:10478125-10478144 | None:intergenic | 25.0% |
| !!! | CTTTTAAAGTAGACTATGTT+TGG | + | chr2_3:10478123-10478142 | Msa0277700:intron | 25.0% |
| ! | AATAAACTGTTAATCCAAAC+AGG | + | chr2_3:10478391-10478410 | Msa0277700:intron | 25.0% |
| ! | ATAAACTGTTAATCCAAACA+GGG | + | chr2_3:10478392-10478411 | Msa0277700:intron | 25.0% |
| ! | CTTTCACTGAAATTATCAAA+AGG | + | chr2_3:10478460-10478479 | Msa0277700:intron | 25.0% |
| ! | TCATAAATTTAGGGAATAGT+CGG | + | chr2_3:10479088-10479107 | Msa0277700:three_prime_UTR | 25.0% |
| !!! | GATTTTGTTTTTCTAGGTGT+TGG | - | chr2_3:10474627-10474646 | None:intergenic | 30.0% |
| TTTGATGAGAAAAACAGCAA+AGG | - | chr2_3:10474679-10474698 | None:intergenic | 30.0% | |
| !!! | TGCTGTTTTTCTCATCAAAA+TGG | + | chr2_3:10474680-10474699 | Msa0277700:exon | 30.0% |
| !!! | GCTGTTTTTCTCATCAAAAT+GGG | + | chr2_3:10474681-10474700 | Msa0277700:exon | 30.0% |
| !! | CTGTTTTTCTCATCAAAATG+GGG | + | chr2_3:10474682-10474701 | Msa0277700:exon | 30.0% |
| !!! | ATTTTGTGTATGATGGACTT+TGG | + | chr2_3:10475092-10475111 | Msa0277700:intron | 30.0% |
| !! | TTTGTTGTTGCTGATTAGTT+TGG | + | chr2_3:10475154-10475173 | Msa0277700:intron | 30.0% |
| ! | TGTGTGCTGAAGTTTAAAAT+TGG | + | chr2_3:10475322-10475341 | Msa0277700:intron | 30.0% |
| ATCTGACAATCTCTTATGAA+TGG | + | chr2_3:10475415-10475434 | Msa0277700:intron | 30.0% | |
| ATGTAACTGAAACCTTGATT+CGG | + | chr2_3:10475507-10475526 | Msa0277700:CDS | 30.0% | |
| ! | AGTTGATTGATAGTTTGAAC+TGG | + | chr2_3:10475688-10475707 | Msa0277700:intron | 30.0% |
| TTATGAGATTGCATGACTAT+AGG | + | chr2_3:10476180-10476199 | Msa0277700:intron | 30.0% | |
| AGAAAACAAAATCACGCTTT+AGG | - | chr2_3:10476349-10476368 | None:intergenic | 30.0% | |
| TACAACGTGTGTTCATAATA+TGG | - | chr2_3:10476741-10476760 | None:intergenic | 30.0% | |
| ATATTATGAACACACGTTGT+AGG | + | chr2_3:10476740-10476759 | Msa0277700:intron | 30.0% | |
| TGTGAGACTGAACATAATAA+TGG | - | chr2_3:10477105-10477124 | None:intergenic | 30.0% | |
| GGTCAAAACAAACAAAAGAA+CGG | - | chr2_3:10477228-10477247 | None:intergenic | 30.0% | |
| TGAATAAACTATAGCACATC+TGG | + | chr2_3:10477419-10477438 | Msa0277700:intron | 30.0% | |
| CTGTTATAGAAACACAATCT+TGG | - | chr2_3:10477460-10477479 | None:intergenic | 30.0% | |
| ACAACCTGAAAATATGTATG+GGG | - | chr2_3:10477669-10477688 | None:intergenic | 30.0% | |
| CAACAACCTGAAAATATGTA+TGG | - | chr2_3:10477671-10477690 | None:intergenic | 30.0% | |
| !!! | CATACATATTTTCAGGTTGT+TGG | + | chr2_3:10477669-10477688 | Msa0277700:CDS | 30.0% |
| TATTATCTCGAGGTTTCAAT+AGG | - | chr2_3:10477787-10477806 | None:intergenic | 30.0% | |
| ! | AAAAAAGTGCAAGTCTTACA+AGG | + | chr2_3:10477864-10477883 | Msa0277700:CDS | 30.0% |
| TCTTCTATACTGACACTATA+AGG | - | chr2_3:10477999-10478018 | None:intergenic | 30.0% | |
| TAAGCACTTATGAGAATGTT+TGG | + | chr2_3:10478174-10478193 | Msa0277700:intron | 30.0% | |
| AAGCACTTATGAGAATGTTT+GGG | + | chr2_3:10478175-10478194 | Msa0277700:intron | 30.0% | |
| ! | TTTTCATAAACTTTCCAGGA+TGG | + | chr2_3:10478254-10478273 | Msa0277700:intron | 30.0% |
| GTTCACATAAATCTAGAAGT+AGG | + | chr2_3:10478483-10478502 | Msa0277700:intron | 30.0% | |
| CATAAATCTAGAAGTAGGAT+AGG | + | chr2_3:10478488-10478507 | Msa0277700:intron | 30.0% | |
| !! | AAATTTTGGCATGTAGATCA+TGG | + | chr2_3:10478620-10478639 | Msa0277700:intron | 30.0% |
| !!! | CCTTCTTTTTTACAGAAATG+TGG | - | chr2_3:10478660-10478679 | None:intergenic | 30.0% |
| CCACATTTCTGTAAAAAAGA+AGG | + | chr2_3:10478657-10478676 | Msa0277700:CDS | 30.0% | |
| TTTCGTATCTTCATTCATTC+TGG | - | chr2_3:10478781-10478800 | None:intergenic | 30.0% | |
| TTTGTACAACAACAAAGGAT+TGG | - | chr2_3:10479019-10479038 | None:intergenic | 30.0% | |
| !! | AATCCTTTGTTGTTGTACAA+AGG | + | chr2_3:10479018-10479037 | Msa0277700:three_prime_UTR | 30.0% |
| TAACCTTTGTACAACAACAA+AGG | - | chr2_3:10479024-10479043 | None:intergenic | 30.0% | |
| !! | ACCTGAAATGTTTTCTGAAG+TGG | - | chr2_3:10474882-10474901 | None:intergenic | 35.0% |
| !! | TATGATGGACTTTGGAACAT+AGG | + | chr2_3:10475100-10475119 | Msa0277700:intron | 35.0% |
| TCATTCAACTTCATCACCAT+AGG | - | chr2_3:10475218-10475237 | None:intergenic | 35.0% | |
| ! | TTCAACTAGATAGAGTGCTT+TGG | + | chr2_3:10475438-10475457 | Msa0277700:intron | 35.0% |
| TACTTGCAGAATGTTCATCA+AGG | + | chr2_3:10475482-10475501 | Msa0277700:intron | 35.0% | |
| ! | TGCTTCAAAGGCACATAAAA+TGG | + | chr2_3:10475553-10475572 | Msa0277700:CDS | 35.0% |
| ! | TGATTGATAGTTTGAACTGG+AGG | + | chr2_3:10475691-10475710 | Msa0277700:CDS | 35.0% |
| ! | GATTGATAGTTTGAACTGGA+GGG | + | chr2_3:10475692-10475711 | Msa0277700:CDS | 35.0% |
| AATCAAAATCCAGGCACAAA+AGG | - | chr2_3:10475956-10475975 | None:intergenic | 35.0% | |
| TATAGATCTGGAGGGATTAT+TGG | - | chr2_3:10475991-10476010 | None:intergenic | 35.0% | |
| ! | AACAAAATCACGCTTTAGGT+TGG | - | chr2_3:10476345-10476364 | None:intergenic | 35.0% |
| TCCAACATCTTCGATGTATT+GGG | + | chr2_3:10476459-10476478 | Msa0277700:intron | 35.0% | |
| ! | ATTTAGTTCCACATTGCCTT+TGG | + | chr2_3:10476495-10476514 | Msa0277700:intron | 35.0% |
| TAGAAAGGGGAAAAAGAACA+TGG | + | chr2_3:10476991-10477010 | Msa0277700:intron | 35.0% | |
| GCTTAAGATAAAGCAGTAGA+CGG | - | chr2_3:10477030-10477049 | None:intergenic | 35.0% | |
| AATACACGCAGCACAATATT+AGG | - | chr2_3:10477070-10477089 | None:intergenic | 35.0% | |
| ATATCGTGATCGTGTAATCT+TGG | + | chr2_3:10477138-10477157 | Msa0277700:CDS | 35.0% | |
| CCTTCACACATGTTGTAATA+GGG | - | chr2_3:10477292-10477311 | None:intergenic | 35.0% | |
| ACCTTCACACATGTTGTAAT+AGG | - | chr2_3:10477293-10477312 | None:intergenic | 35.0% | |
| ! | TACAACATGTGTGAAGGTTT+TGG | + | chr2_3:10477295-10477314 | Msa0277700:CDS | 35.0% |
| ! | AATGCCCCATACATATTTTC+AGG | + | chr2_3:10477662-10477681 | Msa0277700:CDS | 35.0% |
| !!! | CATATTTTCAGGTTGTTGGA+AGG | + | chr2_3:10477673-10477692 | Msa0277700:CDS | 35.0% |
| CAATAGGTGACAGGTAAAAT+AGG | - | chr2_3:10477771-10477790 | None:intergenic | 35.0% | |
| GAAGAGAGAATTGCAAAGAA+AGG | + | chr2_3:10478014-10478033 | Msa0277700:intron | 35.0% | |
| ATTGCAAAGAAAGGCTTAGT+TGG | + | chr2_3:10478023-10478042 | Msa0277700:intron | 35.0% | |
| ATGCAAGGACTTTCATGAAT+AGG | - | chr2_3:10478085-10478104 | None:intergenic | 35.0% | |
| AGCACATATGATAAGCACTT+AGG | + | chr2_3:10478355-10478374 | Msa0277700:intron | 35.0% | |
| TTCTGTAAAAAAGAAGGCTC+TGG | + | chr2_3:10478663-10478682 | Msa0277700:CDS | 35.0% | |
| ! | GAGTGAAAATTGCTATTCCT+TGG | + | chr2_3:10478710-10478729 | Msa0277700:CDS | 35.0% |
| AGAACTCTACGACTACATTA+AGG | + | chr2_3:10478749-10478768 | Msa0277700:CDS | 35.0% | |
| AATTGCCAAGACTATAGAGT+CGG | + | chr2_3:10478860-10478879 | Msa0277700:CDS | 35.0% | |
| ! | TACAACAACAAAGGATTGGT+TGG | - | chr2_3:10479015-10479034 | None:intergenic | 35.0% |
| GTTACACCTTCGTATTTATC+AGG | + | chr2_3:10479040-10479059 | Msa0277700:three_prime_UTR | 35.0% | |
| CAGAATCCTGATAAATACGA+AGG | - | chr2_3:10479049-10479068 | None:intergenic | 35.0% | |
| TGTGGTTTCTTCTCTATGTT+TGG | + | chr2_3:10479190-10479209 | Msa0277700:three_prime_UTR | 35.0% | |
| CTGTGTAAAGACACAGTAAC+AGG | - | chr2_3:10474552-10474571 | None:intergenic | 40.0% | |
| GCCACTTCAGAAAACATTTC+AGG | + | chr2_3:10474878-10474897 | Msa0277700:CDS | 40.0% | |
| ! | AACTAGATAGAGTGCTTTGG+TGG | + | chr2_3:10475441-10475460 | Msa0277700:intron | 40.0% |
| ! | ACTAGATAGAGTGCTTTGGT+GGG | + | chr2_3:10475442-10475461 | Msa0277700:intron | 40.0% |
| TGCTTTCAGAAACCGAATCA+AGG | - | chr2_3:10475522-10475541 | None:intergenic | 40.0% | |
| !! | TGATTCGGTTTCTGAAAGCA+AGG | + | chr2_3:10475522-10475541 | Msa0277700:CDS | 40.0% |
| ! | GATTCGGTTTCTGAAAGCAA+GGG | + | chr2_3:10475523-10475542 | Msa0277700:CDS | 40.0% |
| AAGGGAATGGAATGCTTCAA+AGG | + | chr2_3:10475541-10475560 | Msa0277700:CDS | 40.0% | |
| ATCCCTCCAGATCTATATAG+AGG | + | chr2_3:10475994-10476013 | Msa0277700:CDS | 40.0% | |
| CACCTCTATATAGATCTGGA+GGG | - | chr2_3:10475999-10476018 | None:intergenic | 40.0% | |
| ACACCTCTATATAGATCTGG+AGG | - | chr2_3:10476000-10476019 | None:intergenic | 40.0% | |
| TCTCAACTCATAGGATTGTC+AGG | + | chr2_3:10476027-10476046 | Msa0277700:CDS | 40.0% | |
| CTCAACTCATAGGATTGTCA+GGG | + | chr2_3:10476028-10476047 | Msa0277700:CDS | 40.0% | |
| TATAATCTAGGGAGTTCACG+TGG | + | chr2_3:10476241-10476260 | Msa0277700:intron | 40.0% | |
| ATAATCTAGGGAGTTCACGT+GGG | + | chr2_3:10476242-10476261 | Msa0277700:intron | 40.0% | |
| TCTGTCATCTTGACATCTGT+TGG | + | chr2_3:10476366-10476385 | Msa0277700:intron | 40.0% | |
| TGGAAATTCTGCCTTCATTG+CGG | + | chr2_3:10476386-10476405 | Msa0277700:intron | 40.0% | |
| ATGCCACAATTAGGAAGCTA+GGG | - | chr2_3:10476417-10476436 | None:intergenic | 40.0% | |
| AATGCCACAATTAGGAAGCT+AGG | - | chr2_3:10476418-10476437 | None:intergenic | 40.0% | |
| AGCTTCCTAATTGTGGCATT+TGG | + | chr2_3:10476418-10476437 | Msa0277700:intron | 40.0% | |
| GCAATCCAAATGCCACAATT+AGG | - | chr2_3:10476426-10476445 | None:intergenic | 40.0% | |
| CTCCAACATCTTCGATGTAT+TGG | + | chr2_3:10476458-10476477 | Msa0277700:intron | 40.0% | |
| ACCCAATACATCGAAGATGT+TGG | - | chr2_3:10476463-10476482 | None:intergenic | 40.0% | |
| TTCGATGTATTGGGTGTGAA+GGG | + | chr2_3:10476468-10476487 | Msa0277700:intron | 40.0% | |
| !! | AAAACTGGCTTGAAAGACGA+GGG | - | chr2_3:10476562-10476581 | None:intergenic | 40.0% |
| !! | TAAAACTGGCTTGAAAGACG+AGG | - | chr2_3:10476563-10476582 | None:intergenic | 40.0% |
| ! | TCTTTTTCTCTTCCGTTCCT+AGG | + | chr2_3:10476768-10476787 | Msa0277700:intron | 40.0% |
| AAATCGAGATCATACCACCT+AGG | - | chr2_3:10476788-10476807 | None:intergenic | 40.0% | |
| !! | GATCTCGATTTTAACAACCG+TGG | + | chr2_3:10476797-10476816 | Msa0277700:intron | 40.0% |
| TTTGCATGCAGATATAGCCA+CGG | - | chr2_3:10476817-10476836 | None:intergenic | 40.0% | |
| ! | CTGTCTTTGCAATTGGTGTT+GGG | + | chr2_3:10476929-10476948 | Msa0277700:CDS | 40.0% |
| TCTTGGTAGGTTTCAATCGT+TGG | + | chr2_3:10477155-10477174 | Msa0277700:intron | 40.0% | |
| AGAAGGCTACAAGCATATAC+GGG | - | chr2_3:10477249-10477268 | None:intergenic | 40.0% | |
| CAGAAGGCTACAAGCATATA+CGG | - | chr2_3:10477250-10477269 | None:intergenic | 40.0% | |
| CCCTATTACAACATGTGTGA+AGG | + | chr2_3:10477289-10477308 | Msa0277700:CDS | 40.0% | |
| !!! | GTGAAGGTTTTGGATATGAC+TGG | + | chr2_3:10477305-10477324 | Msa0277700:CDS | 40.0% |
| !! | GTCAGCTCTGAATCAGATTA+AGG | + | chr2_3:10477337-10477356 | Msa0277700:CDS | 40.0% |
| AGGGTAGTTCAGATCATCAA+TGG | - | chr2_3:10477615-10477634 | None:intergenic | 40.0% | |
| !!! | TGAAGCCACTTTTACAAGAG+AGG | + | chr2_3:10477835-10477854 | Msa0277700:CDS | 40.0% |
| CTAGTCCTCTCTTGTAAAAG+TGG | - | chr2_3:10477843-10477862 | None:intergenic | 40.0% | |
| ! | TGGCAGTTTTTAACCCAAGA+CGG | + | chr2_3:10478043-10478062 | Msa0277700:intron | 40.0% |
| !! | AGTTGTTTTCTATGCCATCC+TGG | - | chr2_3:10478271-10478290 | None:intergenic | 40.0% |
| TGAGACAGCTTATGACAACT+AGG | - | chr2_3:10478419-10478438 | None:intergenic | 40.0% | |
| TCGTAGAGTTCTTGATGGAA+GGG | - | chr2_3:10478741-10478760 | None:intergenic | 40.0% | |
| TGTAGTCGTAGAGTTCTTGA+TGG | - | chr2_3:10478746-10478765 | None:intergenic | 40.0% | |
| AGATACGAAACCAATCAAGC+AGG | + | chr2_3:10478791-10478810 | Msa0277700:CDS | 40.0% | |
| GATACGAAACCAATCAAGCA+GGG | + | chr2_3:10478792-10478811 | Msa0277700:CDS | 40.0% | |
| CAGGTTCAGGAAATTCAACA+TGG | - | chr2_3:10478824-10478843 | None:intergenic | 40.0% | |
| CTTGGCAATTTCTCCATCAT+CGG | - | chr2_3:10478850-10478869 | None:intergenic | 40.0% | |
| ACAAGTTTGAGAACAGCCAT+GGG | + | chr2_3:10478889-10478908 | Msa0277700:CDS | 40.0% | |
| AACCATCAATCACATTCCCA+TGG | - | chr2_3:10478908-10478927 | None:intergenic | 40.0% | |
| ACACAATGCAAAGCTCGTAA+CGG | - | chr2_3:10479121-10479140 | None:intergenic | 40.0% | |
| ACACAGACACAGTGAAACAC+AGG | + | chr2_3:10474566-10474585 | Msa0277700:five_prime_UTR | 45.0% | |
| CAAAATGGGGATTGTCTCTC+AGG | + | chr2_3:10474695-10474714 | Msa0277700:exon | 45.0% | |
| ! | GAGAGCCTGAAGTTGGTTAA+GGG | - | chr2_3:10474724-10474743 | None:intergenic | 45.0% |
| ! | TGAGAGCCTGAAGTTGGTTA+AGG | - | chr2_3:10474725-10474744 | None:intergenic | 45.0% |
| GATCTATGAGAGCCTGAAGT+TGG | - | chr2_3:10474731-10474750 | None:intergenic | 45.0% | |
| CTTCAGGCTCTCATAGATCA+AGG | + | chr2_3:10474732-10474751 | Msa0277700:CDS | 45.0% | |
| GTTCAATCAATGTGGCAGAC+TGG | + | chr2_3:10475258-10475277 | Msa0277700:intron | 45.0% | |
| ! | GGTTTCTGAAAGCAAGGGAA+TGG | + | chr2_3:10475528-10475547 | Msa0277700:CDS | 45.0% |
| ! | GAGTTCTTACCTTTTGTGCC+TGG | + | chr2_3:10475944-10475963 | Msa0277700:intron | 45.0% |
| CGCACACCTCTATATAGATC+TGG | - | chr2_3:10476003-10476022 | None:intergenic | 45.0% | |
| GTGCGTGATTCTCAACTCAT+AGG | + | chr2_3:10476018-10476037 | Msa0277700:CDS | 45.0% | |
| ! | ATTGTCAGGGTACTCAAGAG+AGG | + | chr2_3:10476041-10476060 | Msa0277700:CDS | 45.0% |
| ! | GTGATTGGGATTGGTGAATG+TGG | - | chr2_3:10476213-10476232 | None:intergenic | 45.0% |
| CACGTGGGATTCTCATGTTT+AGG | + | chr2_3:10476257-10476276 | Msa0277700:intron | 45.0% | |
| GGGATTCTCATGTTTAGGCA+CGG | + | chr2_3:10476262-10476281 | Msa0277700:intron | 45.0% | |
| AGGCACGGTAACAGTTACAT+AGG | + | chr2_3:10476277-10476296 | Msa0277700:intron | 45.0% | |
| TTGTTTGTGCCACCAAACTG+AGG | + | chr2_3:10476314-10476333 | Msa0277700:intron | 45.0% | |
| TGTTTGTGCCACCAAACTGA+GGG | + | chr2_3:10476315-10476334 | Msa0277700:intron | 45.0% | |
| TGCCACAATTAGGAAGCTAG+GGG | - | chr2_3:10476416-10476435 | None:intergenic | 45.0% | |
| GATGTTGGAGTCTGCAATGA+AGG | - | chr2_3:10476448-10476467 | None:intergenic | 45.0% | |
| CTTCGATGTATTGGGTGTGA+AGG | + | chr2_3:10476467-10476486 | Msa0277700:intron | 45.0% | |
| TCGATGTATTGGGTGTGAAG+GGG | + | chr2_3:10476469-10476488 | Msa0277700:intron | 45.0% | |
| ATCTCTAGCCAAAGGCAATG+TGG | - | chr2_3:10476506-10476525 | None:intergenic | 45.0% | |
| CGGGTTATATCTCTAGCCAA+AGG | - | chr2_3:10476514-10476533 | None:intergenic | 45.0% | |
| ! | TTTTCTCTTCCGTTCCTAGG+TGG | + | chr2_3:10476771-10476790 | Msa0277700:intron | 45.0% |
| GAGATCATACCACCTAGGAA+CGG | - | chr2_3:10476783-10476802 | None:intergenic | 45.0% | |
| TTGCTCTACCACCCTTATCA+GGG | + | chr2_3:10476901-10476920 | Msa0277700:intron | 45.0% | |
| CCAACACCAATTGCAAAGAC+AGG | - | chr2_3:10476931-10476950 | None:intergenic | 45.0% | |
| CCTGTCTTTGCAATTGGTGT+TGG | + | chr2_3:10476928-10476947 | Msa0277700:CDS | 45.0% | |
| !! | GCTGCGTGTATTTTGTTTGC+AGG | + | chr2_3:10477078-10477097 | Msa0277700:intron | 45.0% |
| CGTGATCGTGTAATCTTGGT+AGG | + | chr2_3:10477142-10477161 | Msa0277700:intron | 45.0% | |
| TCGAGGTTTCAATAGGTGAC+AGG | - | chr2_3:10477780-10477799 | None:intergenic | 45.0% | |
| ATTAAACACGTCACGTTCGC+AGG | + | chr2_3:10477809-10477828 | Msa0277700:intron | 45.0% | |
| TGCAAGTCTTACAAGGCTGT+GGG | + | chr2_3:10477871-10477890 | Msa0277700:CDS | 45.0% | |
| ! | GGCAGTTTTTAACCCAAGAC+GGG | + | chr2_3:10478044-10478063 | Msa0277700:intron | 45.0% |
| ATGACAACTAGGACCCTGTT+TGG | - | chr2_3:10478408-10478427 | None:intergenic | 45.0% | |
| CTCTGGATCATCCAAACACT+CGG | + | chr2_3:10478680-10478699 | Msa0277700:CDS | 45.0% | |
| TCTGGATCATCCAAACACTC+GGG | + | chr2_3:10478681-10478700 | Msa0277700:CDS | 45.0% | |
| CGTAGAGTTCTTGATGGAAG+GGG | - | chr2_3:10478740-10478759 | None:intergenic | 45.0% | |
| GTCGTAGAGTTCTTGATGGA+AGG | - | chr2_3:10478742-10478761 | None:intergenic | 45.0% | |
| TGGAAAGATCCCTGCTTGAT+TGG | - | chr2_3:10478804-10478823 | None:intergenic | 45.0% | |
| CATCTCCGACTCTATAGTCT+TGG | - | chr2_3:10478868-10478887 | None:intergenic | 45.0% | |
| CACAAGTTTGAGAACAGCCA+TGG | + | chr2_3:10478888-10478907 | Msa0277700:CDS | 45.0% | |
| AGCCATGGGAATGTGATTGA+TGG | + | chr2_3:10478903-10478922 | Msa0277700:CDS | 45.0% | |
| ! | GGATTGGCAAAAAGACCAGA+AGG | - | chr2_3:10478968-10478987 | None:intergenic | 45.0% |
| !! | TAAAAAAAGAAATAAAAAAA+GGG | - | chr2_3:10474791-10474810 | None:intergenic | 5.0% |
| !! | TTAAAAAAAGAAATAAAAAA+AGG | - | chr2_3:10474792-10474811 | None:intergenic | 5.0% |
| !!! | AGTTAATATAATATTTTAAA+AGG | + | chr2_3:10475799-10475818 | Msa0277700:intron | 5.0% |
| GGATGCCCTTAACCAACTTC+AGG | + | chr2_3:10474716-10474735 | Msa0277700:CDS | 50.0% | |
| CACAATTAGGAAGCTAGGGG+TGG | - | chr2_3:10476413-10476432 | None:intergenic | 50.0% | |
| CACCCCTAGCTTCCTAATTG+TGG | + | chr2_3:10476411-10476430 | Msa0277700:intron | 50.0% | |
| ATGTATTGGGTGTGAAGGGG+TGG | + | chr2_3:10476472-10476491 | Msa0277700:intron | 50.0% | |
| CTTGCTCTACCACCCTTATC+AGG | + | chr2_3:10476900-10476919 | Msa0277700:intron | 50.0% | |
| CACCAATTGCAAAGACAGGC+AGG | - | chr2_3:10476927-10476946 | None:intergenic | 50.0% | |
| CCTTGCTTCTTCGATGCAGA+AGG | - | chr2_3:10477266-10477285 | None:intergenic | 50.0% | |
| CCTTCTGCATCGAAGAAGCA+AGG | + | chr2_3:10477263-10477282 | Msa0277700:CDS | 50.0% | |
| GTGCAAGTCTTACAAGGCTG+TGG | + | chr2_3:10477870-10477889 | Msa0277700:CDS | 50.0% | |
| CTCCAATCAGCACATACTCG+TGG | + | chr2_3:10477971-10477990 | Msa0277700:intron | 50.0% | |
| ! | CTCCACGAGTATGTGCTGAT+TGG | - | chr2_3:10477976-10477995 | None:intergenic | 50.0% |
| TAACCCAAGACGGGAGACAT+CGG | + | chr2_3:10478053-10478072 | Msa0277700:intron | 50.0% | |
| TCATCCAAACACTCGGGTAG+TGG | + | chr2_3:10478687-10478706 | Msa0277700:CDS | 50.0% | |
| CATCCAAACACTCGGGTAGT+GGG | + | chr2_3:10478688-10478707 | Msa0277700:CDS | 50.0% | |
| TTGATGGAAGGGGTGATCCA+AGG | - | chr2_3:10478730-10478749 | None:intergenic | 50.0% | |
| ATTTCTCCATCATCGGCAGC+AGG | - | chr2_3:10478843-10478862 | None:intergenic | 50.0% | |
| TCAACGGTGTCTTCACCTTC+TGG | + | chr2_3:10478950-10478969 | Msa0277700:three_prime_UTR | 50.0% | |
| TTGGTACGCCCTCAGTTTGG+TGG | - | chr2_3:10476326-10476345 | None:intergenic | 55.0% | |
| !! | AGGTTGGTACGCCCTCAGTT+TGG | - | chr2_3:10476329-10476348 | None:intergenic | 55.0% |
| AGACAGGCAGGCCCTGATAA+GGG | - | chr2_3:10476915-10476934 | None:intergenic | 55.0% | |
| AAGACAGGCAGGCCCTGATA+AGG | - | chr2_3:10476916-10476935 | None:intergenic | 55.0% | |
| GGCCTGCCTGTCTTTGCAAT+TGG | + | chr2_3:10476922-10476941 | Msa0277700:CDS | 55.0% | |
| ATGCCGATGTCTCCCGTCTT+GGG | - | chr2_3:10478059-10478078 | None:intergenic | 55.0% | |
| TATGCCGATGTCTCCCGTCT+TGG | - | chr2_3:10478060-10478079 | None:intergenic | 55.0% | |
| ACTCCCACTACCCGAGTGTT+TGG | - | chr2_3:10478694-10478713 | None:intergenic | 55.0% | |
| CTAGGGGTGGACCGCAATGA+AGG | - | chr2_3:10476400-10476419 | None:intergenic | 60.0% | |
| TGGGCGAGATGAGCTGCTGA+AGG | + | chr2_3:10477890-10477909 | Msa0277700:CDS | 60.0% | |
| CCATCATCGGCAGCAGGTTC+AGG | - | chr2_3:10478837-10478856 | None:intergenic | 60.0% | |
| CCTGAACCTGCTGCCGATGA+TGG | + | chr2_3:10478834-10478853 | Msa0277700:CDS | 60.0% | |
| CAGGCAGGCCCTGATAAGGG+TGG | - | chr2_3:10476912-10476931 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 10474513 | 10479253 | 10474513 | ID=Msa0277700;Name=Msa0277700 |
| chr2_3 | mRNA | 10474513 | 10479253 | 10474513 | ID=Msa0277700-mRNA-1;Parent=Msa0277700;Name=Msa0277700-mRNA-1;_AED=0.09;_eAED=0.09;_QI=186|1|1|1|1|1|11|324|328 |
| chr2_3 | exon | 10474513 | 10474753 | 10474513 | ID=Msa0277700-mRNA-1:exon:4597;Parent=Msa0277700-mRNA-1 |
| chr2_3 | exon | 10474871 | 10474899 | 10474871 | ID=Msa0277700-mRNA-1:exon:4598;Parent=Msa0277700-mRNA-1 |
| chr2_3 | exon | 10475491 | 10475574 | 10475491 | ID=Msa0277700-mRNA-1:exon:4599;Parent=Msa0277700-mRNA-1 |
| chr2_3 | exon | 10475690 | 10475743 | 10475690 | ID=Msa0277700-mRNA-1:exon:4600;Parent=Msa0277700-mRNA-1 |
| chr2_3 | exon | 10475985 | 10476062 | 10475985 | ID=Msa0277700-mRNA-1:exon:4601;Parent=Msa0277700-mRNA-1 |
| chr2_3 | exon | 10476922 | 10476975 | 10476922 | ID=Msa0277700-mRNA-1:exon:4602;Parent=Msa0277700-mRNA-1 |
| chr2_3 | exon | 10477100 | 10477159 | 10477100 | ID=Msa0277700-mRNA-1:exon:4603;Parent=Msa0277700-mRNA-1 |
| chr2_3 | exon | 10477263 | 10477358 | 10477263 | ID=Msa0277700-mRNA-1:exon:4604;Parent=Msa0277700-mRNA-1 |
| chr2_3 | exon | 10477593 | 10477694 | 10477593 | ID=Msa0277700-mRNA-1:exon:4605;Parent=Msa0277700-mRNA-1 |
| chr2_3 | exon | 10477831 | 10477911 | 10477831 | ID=Msa0277700-mRNA-1:exon:4606;Parent=Msa0277700-mRNA-1 |
| chr2_3 | exon | 10478636 | 10479253 | 10478636 | ID=Msa0277700-mRNA-1:exon:4607;Parent=Msa0277700-mRNA-1 |
| chr2_3 | five_prime_UTR | 10474513 | 10474698 | 10474513 | ID=Msa0277700-mRNA-1:five_prime_utr;Parent=Msa0277700-mRNA-1 |
| chr2_3 | CDS | 10474699 | 10474753 | 10474699 | ID=Msa0277700-mRNA-1:cds;Parent=Msa0277700-mRNA-1 |
| chr2_3 | CDS | 10474871 | 10474899 | 10474871 | ID=Msa0277700-mRNA-1:cds;Parent=Msa0277700-mRNA-1 |
| chr2_3 | CDS | 10475491 | 10475574 | 10475491 | ID=Msa0277700-mRNA-1:cds;Parent=Msa0277700-mRNA-1 |
| chr2_3 | CDS | 10475690 | 10475743 | 10475690 | ID=Msa0277700-mRNA-1:cds;Parent=Msa0277700-mRNA-1 |
| chr2_3 | CDS | 10475985 | 10476062 | 10475985 | ID=Msa0277700-mRNA-1:cds;Parent=Msa0277700-mRNA-1 |
| chr2_3 | CDS | 10476922 | 10476975 | 10476922 | ID=Msa0277700-mRNA-1:cds;Parent=Msa0277700-mRNA-1 |
| chr2_3 | CDS | 10477100 | 10477159 | 10477100 | ID=Msa0277700-mRNA-1:cds;Parent=Msa0277700-mRNA-1 |
| chr2_3 | CDS | 10477263 | 10477358 | 10477263 | ID=Msa0277700-mRNA-1:cds;Parent=Msa0277700-mRNA-1 |
| chr2_3 | CDS | 10477593 | 10477694 | 10477593 | ID=Msa0277700-mRNA-1:cds;Parent=Msa0277700-mRNA-1 |
| chr2_3 | CDS | 10477831 | 10477911 | 10477831 | ID=Msa0277700-mRNA-1:cds;Parent=Msa0277700-mRNA-1 |
| chr2_3 | CDS | 10478636 | 10478929 | 10478636 | ID=Msa0277700-mRNA-1:cds;Parent=Msa0277700-mRNA-1 |
| chr2_3 | three_prime_UTR | 10478930 | 10479253 | 10478930 | ID=Msa0277700-mRNA-1:three_prime_utr;Parent=Msa0277700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
