Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239520 | XP_003594312.1 | 97.256 | 328 | 9 | 0 | 1 | 328 | 1 | 328 | 0.0 | 665 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239520 | sp|F4JVA9|SFH2_ARATH | 29.889 | 271 | 173 | 7 | 1 | 259 | 60 | 325 | 1.64e-21 | 98.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239520 | Q2HV32 | 97.256 | 328 | 9 | 0 | 1 | 328 | 1 | 328 | 0.0 | 665 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008110 | Msa0239520 | 0.806597 | 7.616121e-50 | -8.615850e-47 |
| Msa0036850 | Msa0239520 | 0.801793 | 7.613381e-49 | -8.615850e-47 |
| Msa0057420 | Msa0239520 | 0.805116 | 1.558827e-49 | -8.615850e-47 |
| Msa0149370 | Msa0239520 | 0.800594 | 1.339337e-48 | -8.615850e-47 |
| Msa0239520 | Msa0277700 | 0.850092 | 2.122894e-60 | -8.615850e-47 |
| Msa0239520 | Msa0317400 | 0.885157 | 1.035876e-71 | -8.615850e-47 |
| Msa0239520 | Msa0428150 | 0.814730 | 1.327525e-51 | -8.615850e-47 |
| Msa0239520 | Msa0462500 | 0.822389 | 2.431881e-53 | -8.615850e-47 |
| Msa0239520 | Msa0689520 | 0.806657 | 7.395568e-50 | -8.615850e-47 |
| Msa0239520 | Msa0751570 | 0.821489 | 3.929728e-53 | -8.615850e-47 |
| Msa0239520 | Msa1432950 | 0.802477 | 5.506851e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239520 | MtrunA17_Chr2g0290661 | 97.256 | 328 | 9 | 0 | 1 | 328 | 1 | 328 | 0.0 | 665 |
| Msa0239520 | MtrunA17_Chr4g0076441 | 81.107 | 307 | 58 | 0 | 7 | 313 | 2 | 308 | 0.0 | 528 |
| Msa0239520 | MtrunA17_Chr3g0102691 | 68.210 | 324 | 99 | 3 | 7 | 327 | 2 | 324 | 1.24e-168 | 473 |
| Msa0239520 | MtrunA17_Chr4g0075941 | 81.818 | 165 | 30 | 0 | 7 | 171 | 2 | 166 | 3.75e-96 | 282 |
| Msa0239520 | MtrunA17_Chr3g0144891 | 29.437 | 231 | 151 | 4 | 39 | 259 | 98 | 326 | 1.34e-20 | 92.4 |
| Msa0239520 | MtrunA17_Chr4g0035361 | 28.571 | 231 | 153 | 4 | 39 | 259 | 2 | 230 | 1.76e-20 | 91.7 |
| Msa0239520 | MtrunA17_Chr8g0369291 | 31.092 | 238 | 141 | 6 | 38 | 259 | 90 | 320 | 1.03e-19 | 89.7 |
| Msa0239520 | MtrunA17_Chr7g0236461 | 27.306 | 271 | 167 | 6 | 38 | 295 | 100 | 353 | 1.17e-19 | 89.7 |
| Msa0239520 | MtrunA17_Chr5g0399151 | 29.048 | 210 | 141 | 3 | 38 | 241 | 115 | 322 | 2.04e-19 | 88.6 |
| Msa0239520 | MtrunA17_Chr3g0144911 | 27.490 | 251 | 150 | 7 | 13 | 246 | 93 | 328 | 7.41e-19 | 86.7 |
| Msa0239520 | MtrunA17_Chr5g0404711 | 28.333 | 240 | 136 | 6 | 39 | 256 | 77 | 302 | 9.63e-18 | 83.6 |
| Msa0239520 | MtrunA17_Chr8g0372651 | 27.632 | 228 | 153 | 4 | 39 | 256 | 80 | 305 | 1.27e-17 | 83.6 |
| Msa0239520 | MtrunA17_Chr1g0155521 | 29.108 | 213 | 135 | 4 | 39 | 241 | 113 | 319 | 3.72e-17 | 82.4 |
| Msa0239520 | MtrunA17_Chr4g0035391 | 28.085 | 235 | 153 | 5 | 13 | 241 | 90 | 314 | 4.45e-17 | 82.0 |
| Msa0239520 | MtrunA17_Chr3g0141821 | 28.169 | 213 | 137 | 5 | 39 | 241 | 94 | 300 | 2.17e-16 | 80.1 |
| Msa0239520 | MtrunA17_Chr3g0080051 | 27.897 | 233 | 155 | 5 | 38 | 259 | 102 | 332 | 9.65e-16 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239520 | AT5G47730.4 | 74.613 | 323 | 80 | 1 | 1 | 323 | 1 | 321 | 0.0 | 507 |
| Msa0239520 | AT5G47730.1 | 74.613 | 323 | 80 | 1 | 1 | 323 | 1 | 321 | 0.0 | 507 |
| Msa0239520 | AT1G55840.1 | 66.978 | 321 | 105 | 1 | 1 | 320 | 1 | 321 | 2.42e-173 | 484 |
| Msa0239520 | AT1G55840.2 | 70.307 | 293 | 86 | 1 | 29 | 320 | 2 | 294 | 1.92e-164 | 460 |
| Msa0239520 | AT5G47730.2 | 77.239 | 268 | 59 | 1 | 56 | 323 | 1 | 266 | 3.84e-153 | 431 |
| Msa0239520 | AT5G47730.3 | 77.239 | 268 | 59 | 1 | 56 | 323 | 1 | 266 | 3.84e-153 | 431 |
| Msa0239520 | AT4G39180.1 | 29.889 | 271 | 173 | 7 | 1 | 259 | 60 | 325 | 1.67e-22 | 98.6 |
| Msa0239520 | AT4G39180.3 | 29.889 | 271 | 173 | 7 | 1 | 259 | 60 | 325 | 1.75e-22 | 98.6 |
| Msa0239520 | AT4G39180.2 | 29.889 | 271 | 173 | 7 | 1 | 259 | 60 | 325 | 1.75e-22 | 98.6 |
| Msa0239520 | AT3G24840.1 | 30.172 | 232 | 150 | 4 | 38 | 259 | 103 | 332 | 4.96e-22 | 97.1 |
| Msa0239520 | AT3G24840.6 | 30.172 | 232 | 150 | 4 | 38 | 259 | 103 | 332 | 4.96e-22 | 97.1 |
| Msa0239520 | AT3G24840.4 | 30.172 | 232 | 150 | 4 | 38 | 259 | 103 | 332 | 4.96e-22 | 97.1 |
| Msa0239520 | AT3G24840.2 | 30.172 | 232 | 150 | 4 | 38 | 259 | 103 | 332 | 4.96e-22 | 97.1 |
| Msa0239520 | AT3G24840.7 | 30.172 | 232 | 150 | 4 | 38 | 259 | 103 | 332 | 4.97e-22 | 97.1 |
| Msa0239520 | AT3G24840.3 | 30.172 | 232 | 150 | 4 | 38 | 259 | 103 | 332 | 4.97e-22 | 97.1 |
| Msa0239520 | AT3G24840.5 | 30.172 | 232 | 150 | 4 | 38 | 259 | 103 | 332 | 4.97e-22 | 97.1 |
| Msa0239520 | AT2G21540.3 | 28.727 | 275 | 171 | 8 | 1 | 259 | 59 | 324 | 4.06e-21 | 94.4 |
| Msa0239520 | AT2G21540.5 | 28.727 | 275 | 171 | 8 | 1 | 259 | 59 | 324 | 4.06e-21 | 94.4 |
| Msa0239520 | AT2G21540.6 | 28.727 | 275 | 171 | 8 | 1 | 259 | 59 | 324 | 4.65e-21 | 94.4 |
| Msa0239520 | AT2G21540.2 | 28.727 | 275 | 171 | 8 | 1 | 259 | 59 | 324 | 4.65e-21 | 94.4 |
| Msa0239520 | AT2G21540.1 | 28.727 | 275 | 171 | 8 | 1 | 259 | 59 | 324 | 4.65e-21 | 94.4 |
| Msa0239520 | AT2G21540.4 | 28.727 | 275 | 171 | 8 | 1 | 259 | 59 | 324 | 4.65e-21 | 94.4 |
| Msa0239520 | AT4G34580.2 | 29.183 | 257 | 162 | 6 | 13 | 259 | 71 | 317 | 6.00e-21 | 94.0 |
| Msa0239520 | AT4G34580.1 | 29.183 | 257 | 162 | 6 | 13 | 259 | 71 | 317 | 6.00e-21 | 94.0 |
| Msa0239520 | AT2G18180.1 | 29.362 | 235 | 146 | 5 | 39 | 259 | 82 | 310 | 7.55e-20 | 90.5 |
| Msa0239520 | AT2G18180.2 | 29.362 | 235 | 146 | 5 | 39 | 259 | 82 | 310 | 7.73e-20 | 90.5 |
| Msa0239520 | AT2G18180.4 | 29.237 | 236 | 147 | 5 | 38 | 259 | 10 | 239 | 1.10e-19 | 89.7 |
| Msa0239520 | AT2G18180.3 | 29.237 | 236 | 147 | 5 | 38 | 259 | 10 | 239 | 1.12e-19 | 90.1 |
| Msa0239520 | AT4G36490.1 | 28.947 | 228 | 150 | 4 | 39 | 256 | 79 | 304 | 1.64e-19 | 89.7 |
| Msa0239520 | AT5G47510.2 | 28.511 | 235 | 152 | 6 | 21 | 241 | 26 | 258 | 3.00e-19 | 87.4 |
| Msa0239520 | AT5G47510.1 | 28.511 | 235 | 152 | 6 | 21 | 241 | 25 | 257 | 4.03e-19 | 87.4 |
| Msa0239520 | AT5G47510.4 | 28.016 | 257 | 165 | 7 | 21 | 259 | 26 | 280 | 4.18e-19 | 87.4 |
| Msa0239520 | AT2G16380.2 | 27.542 | 236 | 149 | 5 | 39 | 259 | 89 | 317 | 5.01e-19 | 88.2 |
| Msa0239520 | AT2G16380.1 | 27.542 | 236 | 149 | 5 | 39 | 259 | 89 | 317 | 5.01e-19 | 88.2 |
| Msa0239520 | AT2G21520.2 | 28.440 | 218 | 130 | 4 | 39 | 241 | 115 | 321 | 3.67e-18 | 85.9 |
| Msa0239520 | AT2G21520.3 | 28.440 | 218 | 130 | 4 | 39 | 241 | 115 | 321 | 3.67e-18 | 85.9 |
| Msa0239520 | AT2G21520.1 | 28.440 | 218 | 130 | 4 | 39 | 241 | 111 | 317 | 4.45e-18 | 85.5 |
| Msa0239520 | AT1G19650.2 | 28.755 | 233 | 154 | 5 | 34 | 256 | 28 | 258 | 4.90e-17 | 82.0 |
| Msa0239520 | AT4G39170.2 | 27.869 | 244 | 157 | 7 | 9 | 241 | 80 | 315 | 5.79e-17 | 82.0 |
| Msa0239520 | AT4G39170.1 | 27.869 | 244 | 157 | 7 | 9 | 241 | 80 | 315 | 6.13e-17 | 82.0 |
| Msa0239520 | AT1G19650.3 | 28.509 | 228 | 151 | 5 | 39 | 256 | 105 | 330 | 7.02e-17 | 81.6 |
| Msa0239520 | AT1G19650.1 | 28.509 | 228 | 151 | 5 | 39 | 256 | 105 | 330 | 8.04e-17 | 81.6 |
| Msa0239520 | AT5G56160.2 | 28.448 | 232 | 153 | 6 | 39 | 259 | 95 | 324 | 1.10e-15 | 78.2 |
| Msa0239520 | AT5G56160.1 | 28.448 | 232 | 153 | 6 | 39 | 259 | 95 | 324 | 1.39e-15 | 77.8 |
| Msa0239520 | AT5G56160.3 | 28.448 | 232 | 153 | 6 | 39 | 259 | 95 | 324 | 1.39e-15 | 77.8 |
| Msa0239520 | AT1G75370.2 | 26.407 | 231 | 158 | 4 | 39 | 259 | 114 | 342 | 1.71e-15 | 77.8 |
| Msa0239520 | AT1G75370.1 | 26.407 | 231 | 158 | 4 | 39 | 259 | 114 | 342 | 2.00e-15 | 77.4 |
| Msa0239520 | AT5G47510.3 | 27.232 | 224 | 151 | 5 | 46 | 259 | 2 | 223 | 2.03e-15 | 76.3 |
| Msa0239520 | AT1G55690.3 | 29.204 | 226 | 149 | 5 | 38 | 256 | 101 | 322 | 9.59e-15 | 75.5 |
| Msa0239520 | AT1G55690.2 | 29.204 | 226 | 149 | 5 | 38 | 256 | 101 | 322 | 1.14e-14 | 75.1 |
| Msa0239520 | AT1G55690.4 | 29.204 | 226 | 149 | 5 | 38 | 256 | 101 | 322 | 1.14e-14 | 75.1 |
| Msa0239520 | AT1G55690.1 | 29.204 | 226 | 149 | 5 | 38 | 256 | 101 | 322 | 1.14e-14 | 75.1 |
| Msa0239520 | AT1G55690.5 | 29.204 | 226 | 149 | 5 | 38 | 256 | 101 | 322 | 1.14e-14 | 75.1 |
| Msa0239520 | AT2G18180.5 | 29.944 | 177 | 114 | 3 | 93 | 259 | 36 | 212 | 1.14e-14 | 74.7 |
| Msa0239520 | AT2G16380.3 | 26.484 | 219 | 139 | 5 | 56 | 259 | 1 | 212 | 1.55e-13 | 71.6 |
| Msa0239520 | AT1G01630.1 | 26.389 | 216 | 139 | 7 | 28 | 239 | 41 | 240 | 6.38e-12 | 65.1 |
Find 99 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATCTAGTGTATTCTTTA+AGG | 0.064458 | 2_2:-13966830 | Msa0239520:five_prime_UTR |
| GCCACTTCAGAAAACATTTC+AGG | 0.208871 | 2_2:-13966595 | Msa0239520:intron |
| TTTCGTATCTTCATTCATTC+TGG | 0.215280 | 2_2:+13962695 | None:intergenic |
| TATAGATCTGGAGGGATTAT+TGG | 0.234508 | 2_2:+13965485 | None:intergenic |
| TTAGTTAGTTTCATAAATTT+AGG | 0.236031 | 2_2:-13962395 | Msa0239520:three_prime_UTR |
| TACAACATGTGTGAAGGTTT+TGG | 0.265335 | 2_2:-13964178 | Msa0239520:CDS |
| ACCTTCACACATGTTGTAAT+AGG | 0.265485 | 2_2:+13964183 | None:intergenic |
| GTTACACCTTCGTATTTATC+AGG | 0.279976 | 2_2:-13962433 | Msa0239520:three_prime_UTR |
| TGTGGTTTCTTCTCTATGTT+TGG | 0.292849 | 2_2:-13962283 | Msa0239520:three_prime_UTR |
| TGCTTCAAAGGCACATAAAA+TGG | 0.293424 | 2_2:-13965920 | Msa0239520:intron |
| TCAACGGTGTCTTCACCTTC+TGG | 0.304827 | 2_2:-13962523 | Msa0239520:three_prime_UTR |
| AAATAATTAAGAAAACTTAT+AGG | 0.315780 | 2_2:+13962487 | None:intergenic |
| CCTGTCTTTGCAATTGGTGT+TGG | 0.322928 | 2_2:-13964545 | Msa0239520:CDS |
| CTGTCTTTGCAATTGGTGTT+GGG | 0.324442 | 2_2:-13964544 | Msa0239520:CDS |
| GTCAGCTCTGAATCAGATTA+AGG | 0.332818 | 2_2:-13964136 | Msa0239520:intron |
| TAATAAGTATTTGTCTTCTC+AGG | 0.333195 | 2_2:+13963841 | None:intergenic |
| ACTCCCACTACCCGAGTGTT+TGG | 0.355591 | 2_2:+13962782 | None:intergenic |
| TAGTTAGTTTCATAAATTTA+GGG | 0.355670 | 2_2:-13962394 | Msa0239520:three_prime_UTR |
| AAAGTAGAGATGAAAATAAA+AGG | 0.356262 | 2_2:+13966959 | None:intergenic |
| CCATCATCGGCAGCAGGTTC+AGG | 0.364690 | 2_2:+13962639 | None:intergenic |
| CAACAACCTGAAAATATGTA+TGG | 0.370791 | 2_2:+13963805 | None:intergenic |
| TGAGAGCCTGTAGTTGGTTA+AGG | 0.374437 | 2_2:+13966749 | None:intergenic |
| CAAAATGGGGATTGTCTCTC+AGG | 0.375477 | 2_2:-13966776 | Msa0239520:exon |
| TGAGATAGACAAAATATTAT+CGG | 0.377453 | 2_2:-13965751 | Msa0239520:intron |
| AGAACTCTACGACTACATTA+AGG | 0.379460 | 2_2:-13962724 | Msa0239520:CDS |
| GGCCTGCCTGTCTTTGCAAT+TGG | 0.380598 | 2_2:-13964551 | Msa0239520:CDS |
| TGGAAAGATCCCTGCTTGAT+TGG | 0.395332 | 2_2:+13962672 | None:intergenic |
| TCTCAACTCATAGGATTGTC+AGG | 0.397183 | 2_2:-13965446 | Msa0239520:CDS |
| TGTAGTCGTAGAGTTCTTGA+TGG | 0.410837 | 2_2:+13962730 | None:intergenic |
| TGTGAGACTGAACATAATAA+TGG | 0.417738 | 2_2:+13964371 | None:intergenic |
| CTAGTCCTCTCTTGTAAAAG+TGG | 0.425139 | 2_2:+13963633 | None:intergenic |
| CCTTCACACATGTTGTAATA+GGG | 0.428167 | 2_2:+13964184 | None:intergenic |
| CTGTGTAAAGACACAGTAAC+AGG | 0.435129 | 2_2:+13966922 | None:intergenic |
| CCTGAACCTGCTGCCGATGA+TGG | 0.441897 | 2_2:-13962639 | Msa0239520:CDS |
| ATTAAGAAAACTTATAGGAT+TGG | 0.449957 | 2_2:+13962492 | None:intergenic |
| CGCACACCTCTATATAGATC+TGG | 0.455110 | 2_2:+13965473 | None:intergenic |
| AGTTGATTGATAGTTTGAAC+TGG | 0.457873 | 2_2:-13965785 | Msa0239520:CDS |
| GAGTGAAAATTGCTATTCCT+TGG | 0.463889 | 2_2:-13962763 | Msa0239520:CDS |
| GATCTATGAGAGCCTGTAGT+TGG | 0.468901 | 2_2:+13966743 | None:intergenic |
| GAGAGCCTGTAGTTGGTTAA+GGG | 0.474576 | 2_2:+13966750 | None:intergenic |
| GTGCGTGATTCTCAACTCAT+AGG | 0.478305 | 2_2:-13965455 | Msa0239520:CDS |
| TACAACAACAAAGGATTGGT+TGG | 0.479331 | 2_2:+13962461 | None:intergenic |
| TTTGTACAACAACAAAGGAT+TGG | 0.480635 | 2_2:+13962457 | None:intergenic |
| CTCTGGATCATCCAAACACT+CGG | 0.480807 | 2_2:-13962793 | Msa0239520:CDS |
| ATGTAACTGAAACCTTGATT+CGG | 0.484290 | 2_2:-13965966 | Msa0239520:CDS |
| TCATCCAAACACTCGGGTAG+TGG | 0.491876 | 2_2:-13962786 | Msa0239520:CDS |
| ATATCGTGATCGTGTAATCT+TGG | 0.498359 | 2_2:-13964335 | Msa0239520:intron |
| GTGCAAGTCTTACAAGGCTG+TGG | 0.503529 | 2_2:-13963603 | Msa0239520:CDS |
| ATTTCTCCATCATCGGCAGC+AGG | 0.503769 | 2_2:+13962633 | None:intergenic |
| TGCTTTCAGAAACCGAATCA+AGG | 0.505557 | 2_2:+13965954 | None:intergenic |
| ATCCCTCCAGATCTATATAG+AGG | 0.514400 | 2_2:-13965479 | Msa0239520:CDS |
| TCATAAATTTAGGGAATAGT+CGG | 0.517602 | 2_2:-13962385 | Msa0239520:three_prime_UTR |
| CATCTCCGACTCTATAGTCT+TGG | 0.525279 | 2_2:+13962608 | None:intergenic |
| GGTTTCTGAAAGCAAGGGAA+TGG | 0.525303 | 2_2:-13965945 | Msa0239520:CDS |
| AGGGTAGTTCAGATCATCAA+TGG | 0.526588 | 2_2:+13963861 | None:intergenic |
| GTCGTAGAGTTCTTGATGGA+AGG | 0.530137 | 2_2:+13962734 | None:intergenic |
| CCTTGCTTCTTCGATGCAGA+AGG | 0.533845 | 2_2:+13964210 | None:intergenic |
| ACTTTACTATTATTACTATG+TGG | 0.534472 | 2_2:-13962301 | Msa0239520:three_prime_UTR |
| AAGGGAATGGAATGCTTCAA+AGG | 0.536440 | 2_2:-13965932 | Msa0239520:CDS |
| AACAACCTGAAAATATGTAT+GGG | 0.537851 | 2_2:+13963806 | None:intergenic |
| CCAACACCAATTGCAAAGAC+AGG | 0.538306 | 2_2:+13964545 | None:intergenic |
| CTTGGCAATTTCTCCATCAT+CGG | 0.538362 | 2_2:+13962626 | None:intergenic |
| AGCCATGGGAATGTGATTGA+TGG | 0.540123 | 2_2:-13962570 | Msa0239520:CDS |
| CTACAGGCTCTCATAGATCA+AGG | 0.544454 | 2_2:-13966739 | Msa0239520:intron |
| CACAAGTTTGAGAACAGCCA+TGG | 0.545999 | 2_2:-13962585 | Msa0239520:CDS |
| AATCCTTTGTTGTTGTACAA+AGG | 0.546984 | 2_2:-13962455 | Msa0239520:three_prime_UTR |
| ATTTATGAGTTAATTGTCAA+CGG | 0.547363 | 2_2:-13962539 | Msa0239520:three_prime_UTR |
| TCGTAGAGTTCTTGATGGAA+GGG | 0.547859 | 2_2:+13962735 | None:intergenic |
| TACTTGCAGAATGTTCATCA+AGG | 0.549294 | 2_2:-13965991 | Msa0239520:intron |
| AGATACGAAACCAATCAAGC+AGG | 0.555385 | 2_2:-13962682 | Msa0239520:CDS |
| CCCTATTACAACATGTGTGA+AGG | 0.558981 | 2_2:-13964184 | Msa0239520:CDS |
| GGATGCCCTTAACCAACTAC+AGG | 0.559667 | 2_2:-13966755 | Msa0239520:CDS |
| CATCCAAACACTCGGGTAGT+GGG | 0.564933 | 2_2:-13962785 | Msa0239520:CDS |
| CACCAATTGCAAAGACAGGC+AGG | 0.565402 | 2_2:+13964549 | None:intergenic |
| TGATTCGGTTTCTGAAAGCA+AGG | 0.571047 | 2_2:-13965951 | Msa0239520:CDS |
| AATAAGTATTTGTCTTCTCA+GGG | 0.572204 | 2_2:+13963842 | None:intergenic |
| TGATTGATAGTTTGAACTGG+AGG | 0.575502 | 2_2:-13965782 | Msa0239520:CDS |
| CGTAGAGTTCTTGATGGAAG+GGG | 0.578262 | 2_2:+13962736 | None:intergenic |
| TGCAAGTCTTACAAGGCTGT+GGG | 0.587027 | 2_2:-13963602 | Msa0239520:CDS |
| GATTCGGTTTCTGAAAGCAA+GGG | 0.593415 | 2_2:-13965950 | Msa0239520:CDS |
| TTGATGGAAGGGGTGATCCA+AGG | 0.596882 | 2_2:+13962746 | None:intergenic |
| TAACCTTTGTACAACAACAA+AGG | 0.603310 | 2_2:+13962452 | None:intergenic |
| GATACGAAACCAATCAAGCA+GGG | 0.614789 | 2_2:-13962681 | Msa0239520:CDS |
| ACACCTCTATATAGATCTGG+AGG | 0.616034 | 2_2:+13965476 | None:intergenic |
| GATTGATAGTTTGAACTGGA+GGG | 0.619800 | 2_2:-13965781 | Msa0239520:CDS |
| CAGGTTCAGGAAATTCAACA+TGG | 0.620141 | 2_2:+13962652 | None:intergenic |
| TGGGCGAGATGAGCTGCTGA+AGG | 0.621337 | 2_2:-13963583 | Msa0239520:intron |
| AACCATCAATCACATTCCCA+TGG | 0.627533 | 2_2:+13962568 | None:intergenic |
| AATTGCCAAGACTATAGAGT+CGG | 0.634645 | 2_2:-13962613 | Msa0239520:CDS |
| CTCAACTCATAGGATTGTCA+GGG | 0.644258 | 2_2:-13965445 | Msa0239520:CDS |
| CCTTCTGCATCGAAGAAGCA+AGG | 0.647634 | 2_2:-13964210 | Msa0239520:CDS |
| ACACAATGCAAAGCTCGTAA+CGG | 0.650661 | 2_2:+13962355 | None:intergenic |
| ACAAGTTTGAGAACAGCCAT+GGG | 0.655199 | 2_2:-13962584 | Msa0239520:CDS |
| ACACAGACACAGTGAAACAC+AGG | 0.659073 | 2_2:-13966905 | Msa0239520:five_prime_UTR |
| TCTGGATCATCCAAACACTC+GGG | 0.660259 | 2_2:-13962792 | Msa0239520:CDS |
| ATTGTCAGGGTACTCAAGAG+AGG | 0.668401 | 2_2:-13965432 | Msa0239520:intron |
| ACAACCTGAAAATATGTATG+GGG | 0.668972 | 2_2:+13963807 | None:intergenic |
| CACCTCTATATAGATCTGGA+GGG | 0.669545 | 2_2:+13965477 | None:intergenic |
| CAGAATCCTGATAAATACGA+AGG | 0.670487 | 2_2:+13962427 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAAAATAAATAAAAA+AGG | + | chr2_2:13962518-13962537 | None:intergenic | 0.0% |
| !!! | TATATTAAATTTTTTATTAT+TGG | - | chr2_2:13965653-13965672 | Msa0239520:intron | 0.0% |
| !! | ATAAAATGGTATAATATTTA+TGG | - | chr2_2:13963294-13963313 | Msa0239520:intron | 10.0% |
| !!! | TATTGTTTATATATTTCTTT+TGG | - | chr2_2:13963502-13963521 | Msa0239520:intron | 10.0% |
| !!! | ATTATATTTTATATGTGATT+GGG | + | chr2_2:13963954-13963973 | None:intergenic | 10.0% |
| !!! | ATTAAATTTTTTATTATTGG+AGG | - | chr2_2:13965656-13965675 | Msa0239520:intron | 10.0% |
| !!! | TTTTATTTTTGTTATAGAAA+TGG | - | chr2_2:13966049-13966068 | Msa0239520:intron | 10.0% |
| !! | AAACAAATAACAATATATTA+AGG | + | chr2_2:13966312-13966331 | None:intergenic | 10.0% |
| !! | AAATAATTAAGAAAACTTAT+AGG | + | chr2_2:13966716-13966735 | None:intergenic | 10.0% |
| !! | AAAAAGAAAAACTCAATAAA+GGG | + | chr2_2:13962563-13962582 | None:intergenic | 15.0% |
| !! | AAAAAAGAAAAACTCAATAA+AGG | + | chr2_2:13962564-13962583 | None:intergenic | 15.0% |
| !!! | CATTCCTTTTTTATATTTAT+TGG | - | chr2_2:13963610-13963629 | Msa0239520:CDS | 15.0% |
| !! | TTTGCCAATAAATATAAAAA+AGG | + | chr2_2:13963617-13963636 | None:intergenic | 15.0% |
| !!! | GATTATATTTTATATGTGAT+TGG | + | chr2_2:13963955-13963974 | None:intergenic | 15.0% |
| !! | TCACATATAAAATATAATCT+AGG | - | chr2_2:13963956-13963975 | Msa0239520:intron | 15.0% |
| !! | CACATATAAAATATAATCTA+GGG | - | chr2_2:13963957-13963976 | Msa0239520:intron | 15.0% |
| !!! | AAATTTTATAAACATTACAC+GGG | + | chr2_2:13964260-13964279 | None:intergenic | 15.0% |
| !!! | CAAATTTTATAAACATTACA+CGG | + | chr2_2:13964261-13964280 | None:intergenic | 15.0% |
| !! | GTGTAATGTTTATAAAATTT+GGG | - | chr2_2:13964260-13964279 | Msa0239520:intron | 15.0% |
| !!! | TTTGAACAATTTTACATTTT+AGG | - | chr2_2:13964428-13964447 | Msa0239520:intron | 15.0% |
| !! | TAAGTTTCATTTATTAGAAA+GGG | - | chr2_2:13964704-13964723 | Msa0239520:intron | 15.0% |
| !! | TTTATTTGTTCATACAATAA+CGG | + | chr2_2:13965215-13965234 | None:intergenic | 15.0% |
| !!! | TTAGTTAGTTTCATAAATTT+AGG | - | chr2_2:13966805-13966824 | Msa0239520:five_prime_UTR | 15.0% |
| !!! | TAGTTAGTTTCATAAATTTA+GGG | - | chr2_2:13966806-13966825 | Msa0239520:five_prime_UTR | 15.0% |
| !! | AAAATCTAGTGTATTCTTTA+AGG | - | chr2_2:13962370-13962389 | Msa0239520:three_prime_UTR | 20.0% |
| !! | TGAATATGATTAACTGAAAA+TGG | + | chr2_2:13962640-13962659 | None:intergenic | 20.0% |
| !! | AGATTCAAACTTTATAATGT+TGG | + | chr2_2:13962670-13962689 | None:intergenic | 20.0% |
| !!! | TTTATTATGTTTTTGCTACT+TGG | - | chr2_2:13962699-13962718 | Msa0239520:CDS | 20.0% |
| !!! | TTATTATGTTTTTGCTACTT+GGG | - | chr2_2:13962700-13962719 | Msa0239520:CDS | 20.0% |
| !!! | TGACAATTTATGTTCTTTTT+TGG | - | chr2_2:13962764-13962783 | Msa0239520:CDS | 20.0% |
| !!! | ATGACTTAAATTTTCTGATA+TGG | - | chr2_2:13963110-13963129 | Msa0239520:intron | 20.0% |
| !!! | TTAAATTTTCTGATATGGTT+TGG | - | chr2_2:13963115-13963134 | Msa0239520:intron | 20.0% |
| !! | TGAGATAGACAAAATATTAT+CGG | - | chr2_2:13963449-13963468 | Msa0239520:intron | 20.0% |
| !! | AAACAATAATCTACAAGTAT+CGG | + | chr2_2:13963490-13963509 | None:intergenic | 20.0% |
| !!! | TGTCATTTAATAGATAAACA+TGG | + | chr2_2:13963649-13963668 | None:intergenic | 20.0% |
| !! | CGTGTAATGTTTATAAAATT+TGG | - | chr2_2:13964259-13964278 | Msa0239520:intron | 20.0% |
| !!! | AGAAATTGAGTTTTTATAGA+GGG | + | chr2_2:13964328-13964347 | None:intergenic | 20.0% |
| !!! | TAGAAATTGAGTTTTTATAG+AGG | + | chr2_2:13964329-13964348 | None:intergenic | 20.0% |
| !!! | AACAATTTTACATTTTAGGT+AGG | - | chr2_2:13964432-13964451 | Msa0239520:intron | 20.0% |
| !! | GTAAGTTTCATTTATTAGAA+AGG | - | chr2_2:13964703-13964722 | Msa0239520:intron | 20.0% |
| !! | AAGTTTCATTTATTAGAAAG+GGG | - | chr2_2:13964705-13964724 | Msa0239520:intron | 20.0% |
| !! | CATAAAATATCCAAAAAGAA+AGG | + | chr2_2:13965269-13965288 | None:intergenic | 20.0% |
| !!! | TTTTCTTACTATATTAGCTT+AGG | - | chr2_2:13965465-13965484 | Msa0239520:CDS | 20.0% |
| !! | TGTTTAATATTATTATCTCG+AGG | + | chr2_2:13965524-13965543 | None:intergenic | 20.0% |
| !!! | TTTATTTTCATAAACTTTCC+AGG | - | chr2_2:13965977-13965996 | Msa0239520:CDS | 20.0% |
| !! | TTTCACTGAAATTATCAAAA+GGG | - | chr2_2:13966188-13966207 | Msa0239520:intron | 20.0% |
| !!! | CTTGAATTTGACTAAAATTT+TGG | - | chr2_2:13966333-13966352 | Msa0239520:intron | 20.0% |
| !! | ATTTATGAGTTAATTGTCAA+CGG | - | chr2_2:13966661-13966680 | Msa0239520:intron | 20.0% |
| !! | ATTAAGAAAACTTATAGGAT+TGG | + | chr2_2:13966711-13966730 | None:intergenic | 20.0% |
| !! | ACTTTACTATTATTACTATG+TGG | - | chr2_2:13966899-13966918 | Msa0239520:five_prime_UTR | 20.0% |
| !! | GTAACAAAAAAAAATGCAAA+AGG | + | chr2_2:13966943-13966962 | None:intergenic | 20.0% |
| !!! | CATTTTTTTTTGTTACTATG+TGG | - | chr2_2:13966947-13966966 | Msa0239520:five_prime_UTR | 20.0% |
| !!! | ACACTAGATTTTGTTTTTCT+AGG | + | chr2_2:13962362-13962381 | None:intergenic | 25.0% |
| !! | TTCTTAGATTTTGTGTATGA+TGG | - | chr2_2:13962812-13962831 | Msa0239520:CDS | 25.0% |
| !! | GCATTTTTCTATCAATGTTT+TGG | - | chr2_2:13962911-13962930 | Msa0239520:intron | 25.0% |
| !!! | TGTTTTGGATATTTAACCTA+TGG | - | chr2_2:13962926-13962945 | Msa0239520:intron | 25.0% |
| !!! | AATTTGTTGTTCAATCAATG+TGG | - | chr2_2:13962977-13962996 | Msa0239520:intron | 25.0% |
| ! | TAACTAAAAATGTCACAATC+AGG | + | chr2_2:13963580-13963599 | None:intergenic | 25.0% |
| ! | CTGAAAATAAATCAAAATCC+AGG | + | chr2_2:13963692-13963711 | None:intergenic | 25.0% |
| !! | TTGTACTCAAAAGTATATGT+TGG | - | chr2_2:13963833-13963852 | Msa0239520:CDS | 25.0% |
| !!! | AATCAGAGTTTTAACAACAT+CGG | + | chr2_2:13963883-13963902 | None:intergenic | 25.0% |
| !! | ATTTTATATGTGATTGGGAT+TGG | + | chr2_2:13963949-13963968 | None:intergenic | 25.0% |
| ! | TAACAGTTACATAGGAATAT+AGG | - | chr2_2:13964012-13964031 | Msa0239520:intron | 25.0% |
| ! | CTAACTGAACATTATAAAAC+TGG | + | chr2_2:13964304-13964323 | None:intergenic | 25.0% |
| !!! | CAGTTTTATAATGTTCAGTT+AGG | - | chr2_2:13964302-13964321 | Msa0239520:intron | 25.0% |
| ! | GTATGAACAAATAAATAGAG+CGG | - | chr2_2:13965220-13965239 | Msa0239520:intron | 25.0% |
| !!! | ACTTTGTTTTCCTTTCTTTT+TGG | - | chr2_2:13965256-13965275 | Msa0239520:intron | 25.0% |
| ! | AATAAGTATTTGTCTTCTCA+GGG | + | chr2_2:13965361-13965380 | None:intergenic | 25.0% |
| ! | TAATAAGTATTTGTCTTCTC+AGG | + | chr2_2:13965362-13965381 | None:intergenic | 25.0% |
| ! | AACAACCTGAAAATATGTAT+GGG | + | chr2_2:13965397-13965416 | None:intergenic | 25.0% |
| !!! | TCAAGATAAAGTTTTATGCA+AGG | + | chr2_2:13965827-13965846 | None:intergenic | 25.0% |
| ! | CAAACATAGTCTACTTTAAA+AGG | + | chr2_2:13965852-13965871 | None:intergenic | 25.0% |
| !!! | CTTTTAAAGTAGACTATGTT+TGG | - | chr2_2:13965850-13965869 | Msa0239520:intron | 25.0% |
| ! | AATAAACTGTTAATCCAAAC+AGG | - | chr2_2:13966118-13966137 | Msa0239520:intron | 25.0% |
| ! | ATAAACTGTTAATCCAAACA+GGG | - | chr2_2:13966119-13966138 | Msa0239520:intron | 25.0% |
| ! | CTTTCACTGAAATTATCAAA+AGG | - | chr2_2:13966187-13966206 | Msa0239520:intron | 25.0% |
| ! | TCATAAATTTAGGGAATAGT+CGG | - | chr2_2:13966815-13966834 | Msa0239520:five_prime_UTR | 25.0% |
| !!! | GATTTTGTTTTTCTAGGTGT+TGG | + | chr2_2:13962356-13962375 | None:intergenic | 30.0% |
| !!! | TGCTGTTTTTCTCATCAAAA+TGG | - | chr2_2:13962409-13962428 | Msa0239520:three_prime_UTR | 30.0% |
| !!! | GCTGTTTTTCTCATCAAAAT+GGG | - | chr2_2:13962410-13962429 | Msa0239520:three_prime_UTR | 30.0% |
| !! | CTGTTTTTCTCATCAAAATG+GGG | - | chr2_2:13962411-13962430 | Msa0239520:three_prime_UTR | 30.0% |
| !!! | ATTTTGTGTATGATGGACTT+TGG | - | chr2_2:13962819-13962838 | Msa0239520:CDS | 30.0% |
| !! | TTTGTTGTTGCTGATTAGTT+TGG | - | chr2_2:13962881-13962900 | Msa0239520:intron | 30.0% |
| ! | TGTGTGCTGAAGTTTAAAAT+TGG | - | chr2_2:13963049-13963068 | Msa0239520:intron | 30.0% |
| ATCTGACAATCTCTTATGAA+TGG | - | chr2_2:13963142-13963161 | Msa0239520:intron | 30.0% | |
| ATGTAACTGAAACCTTGATT+CGG | - | chr2_2:13963234-13963253 | Msa0239520:intron | 30.0% | |
| ! | AGTTGATTGATAGTTTGAAC+TGG | - | chr2_2:13963415-13963434 | Msa0239520:intron | 30.0% |
| TTATGAGATTGCATGACTAT+AGG | - | chr2_2:13963907-13963926 | Msa0239520:intron | 30.0% | |
| AGAAAACAAAATCACGCTTT+AGG | + | chr2_2:13964076-13964095 | None:intergenic | 30.0% | |
| TACAACGTGTGTTCATAATA+TGG | + | chr2_2:13964468-13964487 | None:intergenic | 30.0% | |
| ATATTATGAACACACGTTGT+AGG | - | chr2_2:13964467-13964486 | Msa0239520:intron | 30.0% | |
| TGTGAGACTGAACATAATAA+TGG | + | chr2_2:13964832-13964851 | None:intergenic | 30.0% | |
| GGTCAAAACAAACAAAAGAA+CGG | + | chr2_2:13964955-13964974 | None:intergenic | 30.0% | |
| TGAATAAACTATAGCACATC+TGG | - | chr2_2:13965146-13965165 | Msa0239520:intron | 30.0% | |
| CTGTTATAGAAACACAATCT+TGG | + | chr2_2:13965187-13965206 | None:intergenic | 30.0% | |
| ACAACCTGAAAATATGTATG+GGG | + | chr2_2:13965396-13965415 | None:intergenic | 30.0% | |
| CAACAACCTGAAAATATGTA+TGG | + | chr2_2:13965398-13965417 | None:intergenic | 30.0% | |
| !!! | CATACATATTTTCAGGTTGT+TGG | - | chr2_2:13965396-13965415 | Msa0239520:intron | 30.0% |
| TATTATCTCGAGGTTTCAAT+AGG | + | chr2_2:13965514-13965533 | None:intergenic | 30.0% | |
| ! | AAAAAAGTGCAAGTCTTACA+AGG | - | chr2_2:13965591-13965610 | Msa0239520:intron | 30.0% |
| TCTTCTATACTGACACTATA+AGG | + | chr2_2:13965726-13965745 | None:intergenic | 30.0% | |
| TAAGCACTTATGAGAATGTT+TGG | - | chr2_2:13965901-13965920 | Msa0239520:intron | 30.0% | |
| AAGCACTTATGAGAATGTTT+GGG | - | chr2_2:13965902-13965921 | Msa0239520:intron | 30.0% | |
| ! | TTTTCATAAACTTTCCAGGA+TGG | - | chr2_2:13965981-13966000 | Msa0239520:CDS | 30.0% |
| GTTCACATAAATCTAGAAGT+AGG | - | chr2_2:13966210-13966229 | Msa0239520:intron | 30.0% | |
| CATAAATCTAGAAGTAGGAT+AGG | - | chr2_2:13966215-13966234 | Msa0239520:intron | 30.0% | |
| !! | AAATTTTGGCATGTAGATCA+TGG | - | chr2_2:13966347-13966366 | Msa0239520:intron | 30.0% |
| !!! | CCTTCTTTTTTACAGAAATG+TGG | + | chr2_2:13966387-13966406 | None:intergenic | 30.0% |
| CCACATTTCTGTAAAAAAGA+AGG | - | chr2_2:13966384-13966403 | Msa0239520:intron | 30.0% | |
| TTTCGTATCTTCATTCATTC+TGG | + | chr2_2:13966508-13966527 | None:intergenic | 30.0% | |
| TTTGTACAACAACAAAGGAT+TGG | + | chr2_2:13966746-13966765 | None:intergenic | 30.0% | |
| !! | AATCCTTTGTTGTTGTACAA+AGG | - | chr2_2:13966745-13966764 | Msa0239520:CDS | 30.0% |
| TAACCTTTGTACAACAACAA+AGG | + | chr2_2:13966751-13966770 | None:intergenic | 30.0% | |
| !! | ACCTGAAATGTTTTCTGAAG+TGG | + | chr2_2:13962609-13962628 | None:intergenic | 35.0% |
| !! | TATGATGGACTTTGGAACAT+AGG | - | chr2_2:13962827-13962846 | Msa0239520:CDS | 35.0% |
| TCATTCAACTTCATCACCAT+AGG | + | chr2_2:13962945-13962964 | None:intergenic | 35.0% | |
| ! | TTCAACTAGATAGAGTGCTT+TGG | - | chr2_2:13963165-13963184 | Msa0239520:intron | 35.0% |
| TACTTGCAGAATGTTCATCA+AGG | - | chr2_2:13963209-13963228 | Msa0239520:intron | 35.0% | |
| ! | TGCTTCAAAGGCACATAAAA+TGG | - | chr2_2:13963280-13963299 | Msa0239520:intron | 35.0% |
| ! | TGATTGATAGTTTGAACTGG+AGG | - | chr2_2:13963418-13963437 | Msa0239520:intron | 35.0% |
| ! | GATTGATAGTTTGAACTGGA+GGG | - | chr2_2:13963419-13963438 | Msa0239520:intron | 35.0% |
| AATCAAAATCCAGGCACAAA+AGG | + | chr2_2:13963683-13963702 | None:intergenic | 35.0% | |
| TATAGATCTGGAGGGATTAT+TGG | + | chr2_2:13963718-13963737 | None:intergenic | 35.0% | |
| ! | AACAAAATCACGCTTTAGGT+TGG | + | chr2_2:13964072-13964091 | None:intergenic | 35.0% |
| TCCAACATCTTCGATGTATT+GGG | - | chr2_2:13964186-13964205 | Msa0239520:CDS | 35.0% | |
| ! | ATTTAGTTCCACATTGCCTT+TGG | - | chr2_2:13964222-13964241 | Msa0239520:intron | 35.0% |
| TAGAAAGGGGAAAAAGAACA+TGG | - | chr2_2:13964718-13964737 | Msa0239520:intron | 35.0% | |
| GCTTAAGATAAAGCAGTAGA+CGG | + | chr2_2:13964757-13964776 | None:intergenic | 35.0% | |
| AATACACGCAGCACAATATT+AGG | + | chr2_2:13964797-13964816 | None:intergenic | 35.0% | |
| ATATCGTGATCGTGTAATCT+TGG | - | chr2_2:13964865-13964884 | Msa0239520:intron | 35.0% | |
| CCTTCACACATGTTGTAATA+GGG | + | chr2_2:13965019-13965038 | None:intergenic | 35.0% | |
| ACCTTCACACATGTTGTAAT+AGG | + | chr2_2:13965020-13965039 | None:intergenic | 35.0% | |
| ! | TACAACATGTGTGAAGGTTT+TGG | - | chr2_2:13965022-13965041 | Msa0239520:intron | 35.0% |
| ! | AATGCCCCATACATATTTTC+AGG | - | chr2_2:13965389-13965408 | Msa0239520:intron | 35.0% |
| !!! | CATATTTTCAGGTTGTTGGA+AGG | - | chr2_2:13965400-13965419 | Msa0239520:intron | 35.0% |
| CAATAGGTGACAGGTAAAAT+AGG | + | chr2_2:13965498-13965517 | None:intergenic | 35.0% | |
| GAAGAGAGAATTGCAAAGAA+AGG | - | chr2_2:13965741-13965760 | Msa0239520:intron | 35.0% | |
| ATTGCAAAGAAAGGCTTAGT+TGG | - | chr2_2:13965750-13965769 | Msa0239520:intron | 35.0% | |
| ATGCAAGGACTTTCATGAAT+AGG | + | chr2_2:13965812-13965831 | None:intergenic | 35.0% | |
| AGCACATATGATAAGCACTT+AGG | - | chr2_2:13966082-13966101 | Msa0239520:intron | 35.0% | |
| TTCTGTAAAAAAGAAGGCTC+TGG | - | chr2_2:13966390-13966409 | Msa0239520:intron | 35.0% | |
| ! | GAGTGAAAATTGCTATTCCT+TGG | - | chr2_2:13966437-13966456 | Msa0239520:intron | 35.0% |
| AGAACTCTACGACTACATTA+AGG | - | chr2_2:13966476-13966495 | Msa0239520:intron | 35.0% | |
| AATTGCCAAGACTATAGAGT+CGG | - | chr2_2:13966587-13966606 | Msa0239520:intron | 35.0% | |
| ! | TACAACAACAAAGGATTGGT+TGG | + | chr2_2:13966742-13966761 | None:intergenic | 35.0% |
| GTTACACCTTCGTATTTATC+AGG | - | chr2_2:13966767-13966786 | Msa0239520:CDS | 35.0% | |
| CAGAATCCTGATAAATACGA+AGG | + | chr2_2:13966776-13966795 | None:intergenic | 35.0% | |
| TGTGGTTTCTTCTCTATGTT+TGG | - | chr2_2:13966917-13966936 | Msa0239520:five_prime_UTR | 35.0% | |
| CTGTGTAAAGACACAGTAAC+AGG | + | chr2_2:13962281-13962300 | None:intergenic | 40.0% | |
| GCCACTTCAGAAAACATTTC+AGG | - | chr2_2:13962605-13962624 | Msa0239520:CDS | 40.0% | |
| ! | AACTAGATAGAGTGCTTTGG+TGG | - | chr2_2:13963168-13963187 | Msa0239520:intron | 40.0% |
| ! | ACTAGATAGAGTGCTTTGGT+GGG | - | chr2_2:13963169-13963188 | Msa0239520:intron | 40.0% |
| TGCTTTCAGAAACCGAATCA+AGG | + | chr2_2:13963249-13963268 | None:intergenic | 40.0% | |
| !! | TGATTCGGTTTCTGAAAGCA+AGG | - | chr2_2:13963249-13963268 | Msa0239520:intron | 40.0% |
| ! | GATTCGGTTTCTGAAAGCAA+GGG | - | chr2_2:13963250-13963269 | Msa0239520:intron | 40.0% |
| AAGGGAATGGAATGCTTCAA+AGG | - | chr2_2:13963268-13963287 | Msa0239520:intron | 40.0% | |
| ATCCCTCCAGATCTATATAG+AGG | - | chr2_2:13963721-13963740 | Msa0239520:intron | 40.0% | |
| CACCTCTATATAGATCTGGA+GGG | + | chr2_2:13963726-13963745 | None:intergenic | 40.0% | |
| ACACCTCTATATAGATCTGG+AGG | + | chr2_2:13963727-13963746 | None:intergenic | 40.0% | |
| TCTCAACTCATAGGATTGTC+AGG | - | chr2_2:13963754-13963773 | Msa0239520:intron | 40.0% | |
| CTCAACTCATAGGATTGTCA+GGG | - | chr2_2:13963755-13963774 | Msa0239520:intron | 40.0% | |
| TATAATCTAGGGAGTTCACG+TGG | - | chr2_2:13963968-13963987 | Msa0239520:intron | 40.0% | |
| ATAATCTAGGGAGTTCACGT+GGG | - | chr2_2:13963969-13963988 | Msa0239520:intron | 40.0% | |
| TCTGTCATCTTGACATCTGT+TGG | - | chr2_2:13964093-13964112 | Msa0239520:intron | 40.0% | |
| TGGAAATTCTGCCTTCATTG+CGG | - | chr2_2:13964113-13964132 | Msa0239520:intron | 40.0% | |
| ATGCCACAATTAGGAAGCTA+GGG | + | chr2_2:13964144-13964163 | None:intergenic | 40.0% | |
| AATGCCACAATTAGGAAGCT+AGG | + | chr2_2:13964145-13964164 | None:intergenic | 40.0% | |
| AGCTTCCTAATTGTGGCATT+TGG | - | chr2_2:13964145-13964164 | Msa0239520:CDS | 40.0% | |
| GCAATCCAAATGCCACAATT+AGG | + | chr2_2:13964153-13964172 | None:intergenic | 40.0% | |
| CTCCAACATCTTCGATGTAT+TGG | - | chr2_2:13964185-13964204 | Msa0239520:CDS | 40.0% | |
| ACCCAATACATCGAAGATGT+TGG | + | chr2_2:13964190-13964209 | None:intergenic | 40.0% | |
| TTCGATGTATTGGGTGTGAA+GGG | - | chr2_2:13964195-13964214 | Msa0239520:CDS | 40.0% | |
| !! | AAAACTGGCTTGAAAGACGA+GGG | + | chr2_2:13964289-13964308 | None:intergenic | 40.0% |
| !! | TAAAACTGGCTTGAAAGACG+AGG | + | chr2_2:13964290-13964309 | None:intergenic | 40.0% |
| ! | TCTTTTTCTCTTCCGTTCCT+AGG | - | chr2_2:13964495-13964514 | Msa0239520:intron | 40.0% |
| AAATCGAGATCATACCACCT+AGG | + | chr2_2:13964515-13964534 | None:intergenic | 40.0% | |
| !! | GATCTCGATTTTAACAACCG+TGG | - | chr2_2:13964524-13964543 | Msa0239520:CDS | 40.0% |
| TTTGCATGCAGATATAGCCA+CGG | + | chr2_2:13964544-13964563 | None:intergenic | 40.0% | |
| ! | CTGTCTTTGCAATTGGTGTT+GGG | - | chr2_2:13964656-13964675 | Msa0239520:intron | 40.0% |
| TCTTGGTAGGTTTCAATCGT+TGG | - | chr2_2:13964882-13964901 | Msa0239520:intron | 40.0% | |
| AGAAGGCTACAAGCATATAC+GGG | + | chr2_2:13964976-13964995 | None:intergenic | 40.0% | |
| CAGAAGGCTACAAGCATATA+CGG | + | chr2_2:13964977-13964996 | None:intergenic | 40.0% | |
| CCCTATTACAACATGTGTGA+AGG | - | chr2_2:13965016-13965035 | Msa0239520:intron | 40.0% | |
| !!! | GTGAAGGTTTTGGATATGAC+TGG | - | chr2_2:13965032-13965051 | Msa0239520:intron | 40.0% |
| !! | GTCAGCTCTGAATCAGATTA+AGG | - | chr2_2:13965064-13965083 | Msa0239520:intron | 40.0% |
| AGGGTAGTTCAGATCATCAA+TGG | + | chr2_2:13965342-13965361 | None:intergenic | 40.0% | |
| !!! | TGAAGCCACTTTTACAAGAG+AGG | - | chr2_2:13965562-13965581 | Msa0239520:intron | 40.0% |
| CTAGTCCTCTCTTGTAAAAG+TGG | + | chr2_2:13965570-13965589 | None:intergenic | 40.0% | |
| ! | TGGCAGTTTTTAACCCAAGA+CGG | - | chr2_2:13965770-13965789 | Msa0239520:CDS | 40.0% |
| !! | AGTTGTTTTCTATGCCATCC+TGG | + | chr2_2:13965998-13966017 | None:intergenic | 40.0% |
| TGAGACAGCTTATGACAACT+AGG | + | chr2_2:13966146-13966165 | None:intergenic | 40.0% | |
| TCGTAGAGTTCTTGATGGAA+GGG | + | chr2_2:13966468-13966487 | None:intergenic | 40.0% | |
| TGTAGTCGTAGAGTTCTTGA+TGG | + | chr2_2:13966473-13966492 | None:intergenic | 40.0% | |
| AGATACGAAACCAATCAAGC+AGG | - | chr2_2:13966518-13966537 | Msa0239520:intron | 40.0% | |
| GATACGAAACCAATCAAGCA+GGG | - | chr2_2:13966519-13966538 | Msa0239520:intron | 40.0% | |
| CAGGTTCAGGAAATTCAACA+TGG | + | chr2_2:13966551-13966570 | None:intergenic | 40.0% | |
| CTTGGCAATTTCTCCATCAT+CGG | + | chr2_2:13966577-13966596 | None:intergenic | 40.0% | |
| ACAAGTTTGAGAACAGCCAT+GGG | - | chr2_2:13966616-13966635 | Msa0239520:intron | 40.0% | |
| AACCATCAATCACATTCCCA+TGG | + | chr2_2:13966635-13966654 | None:intergenic | 40.0% | |
| ACACAATGCAAAGCTCGTAA+CGG | + | chr2_2:13966848-13966867 | None:intergenic | 40.0% | |
| ACACAGACACAGTGAAACAC+AGG | - | chr2_2:13962295-13962314 | Msa0239520:three_prime_UTR | 45.0% | |
| CAAAATGGGGATTGTCTCTC+AGG | - | chr2_2:13962424-13962443 | Msa0239520:three_prime_UTR | 45.0% | |
| GAGAGCCTGTAGTTGGTTAA+GGG | + | chr2_2:13962453-13962472 | None:intergenic | 45.0% | |
| TGAGAGCCTGTAGTTGGTTA+AGG | + | chr2_2:13962454-13962473 | None:intergenic | 45.0% | |
| GATCTATGAGAGCCTGTAGT+TGG | + | chr2_2:13962460-13962479 | None:intergenic | 45.0% | |
| CTACAGGCTCTCATAGATCA+AGG | - | chr2_2:13962461-13962480 | Msa0239520:three_prime_UTR | 45.0% | |
| GTTCAATCAATGTGGCAGAC+TGG | - | chr2_2:13962985-13963004 | Msa0239520:intron | 45.0% | |
| ! | GGTTTCTGAAAGCAAGGGAA+TGG | - | chr2_2:13963255-13963274 | Msa0239520:intron | 45.0% |
| ! | GAGTTCTTACCTTTTGTGCC+TGG | - | chr2_2:13963671-13963690 | Msa0239520:intron | 45.0% |
| CGCACACCTCTATATAGATC+TGG | + | chr2_2:13963730-13963749 | None:intergenic | 45.0% | |
| GTGCGTGATTCTCAACTCAT+AGG | - | chr2_2:13963745-13963764 | Msa0239520:intron | 45.0% | |
| ! | ATTGTCAGGGTACTCAAGAG+AGG | - | chr2_2:13963768-13963787 | Msa0239520:intron | 45.0% |
| ! | GTGATTGGGATTGGTGAATG+TGG | + | chr2_2:13963940-13963959 | None:intergenic | 45.0% |
| CACGTGGGATTCTCATGTTT+AGG | - | chr2_2:13963984-13964003 | Msa0239520:intron | 45.0% | |
| GGGATTCTCATGTTTAGGCA+CGG | - | chr2_2:13963989-13964008 | Msa0239520:intron | 45.0% | |
| AGGCACGGTAACAGTTACAT+AGG | - | chr2_2:13964004-13964023 | Msa0239520:intron | 45.0% | |
| TTGTTTGTGCCACCAAACTG+AGG | - | chr2_2:13964041-13964060 | Msa0239520:intron | 45.0% | |
| TGTTTGTGCCACCAAACTGA+GGG | - | chr2_2:13964042-13964061 | Msa0239520:intron | 45.0% | |
| TGCCACAATTAGGAAGCTAG+GGG | + | chr2_2:13964143-13964162 | None:intergenic | 45.0% | |
| GATGTTGGAGTCTGCAATGA+AGG | + | chr2_2:13964175-13964194 | None:intergenic | 45.0% | |
| CTTCGATGTATTGGGTGTGA+AGG | - | chr2_2:13964194-13964213 | Msa0239520:CDS | 45.0% | |
| TCGATGTATTGGGTGTGAAG+GGG | - | chr2_2:13964196-13964215 | Msa0239520:CDS | 45.0% | |
| ATCTCTAGCCAAAGGCAATG+TGG | + | chr2_2:13964233-13964252 | None:intergenic | 45.0% | |
| CGGGTTATATCTCTAGCCAA+AGG | + | chr2_2:13964241-13964260 | None:intergenic | 45.0% | |
| ! | TTTTCTCTTCCGTTCCTAGG+TGG | - | chr2_2:13964498-13964517 | Msa0239520:intron | 45.0% |
| GAGATCATACCACCTAGGAA+CGG | + | chr2_2:13964510-13964529 | None:intergenic | 45.0% | |
| TTGCTCTACCACCCTTATCA+GGG | - | chr2_2:13964628-13964647 | Msa0239520:intron | 45.0% | |
| CCAACACCAATTGCAAAGAC+AGG | + | chr2_2:13964658-13964677 | None:intergenic | 45.0% | |
| CCTGTCTTTGCAATTGGTGT+TGG | - | chr2_2:13964655-13964674 | Msa0239520:intron | 45.0% | |
| !! | GCTGCGTGTATTTTGTTTGC+AGG | - | chr2_2:13964805-13964824 | Msa0239520:intron | 45.0% |
| CGTGATCGTGTAATCTTGGT+AGG | - | chr2_2:13964869-13964888 | Msa0239520:intron | 45.0% | |
| TCGAGGTTTCAATAGGTGAC+AGG | + | chr2_2:13965507-13965526 | None:intergenic | 45.0% | |
| ATTAAACACGTCACGTTCGC+AGG | - | chr2_2:13965536-13965555 | Msa0239520:intron | 45.0% | |
| TGCAAGTCTTACAAGGCTGT+GGG | - | chr2_2:13965598-13965617 | Msa0239520:intron | 45.0% | |
| ! | GGCAGTTTTTAACCCAAGAC+GGG | - | chr2_2:13965771-13965790 | Msa0239520:CDS | 45.0% |
| ATGACAACTAGGACCCTGTT+TGG | + | chr2_2:13966135-13966154 | None:intergenic | 45.0% | |
| CTCTGGATCATCCAAACACT+CGG | - | chr2_2:13966407-13966426 | Msa0239520:intron | 45.0% | |
| TCTGGATCATCCAAACACTC+GGG | - | chr2_2:13966408-13966427 | Msa0239520:intron | 45.0% | |
| CGTAGAGTTCTTGATGGAAG+GGG | + | chr2_2:13966467-13966486 | None:intergenic | 45.0% | |
| GTCGTAGAGTTCTTGATGGA+AGG | + | chr2_2:13966469-13966488 | None:intergenic | 45.0% | |
| TGGAAAGATCCCTGCTTGAT+TGG | + | chr2_2:13966531-13966550 | None:intergenic | 45.0% | |
| CATCTCCGACTCTATAGTCT+TGG | + | chr2_2:13966595-13966614 | None:intergenic | 45.0% | |
| CACAAGTTTGAGAACAGCCA+TGG | - | chr2_2:13966615-13966634 | Msa0239520:intron | 45.0% | |
| AGCCATGGGAATGTGATTGA+TGG | - | chr2_2:13966630-13966649 | Msa0239520:intron | 45.0% | |
| ! | GGATTGGCAAAAAGACCAGA+AGG | + | chr2_2:13966695-13966714 | None:intergenic | 45.0% |
| !!! | AGTTAATATAATATTTTAAA+AGG | - | chr2_2:13963526-13963545 | Msa0239520:intron | 5.0% |
| GGATGCCCTTAACCAACTAC+AGG | - | chr2_2:13962445-13962464 | Msa0239520:three_prime_UTR | 50.0% | |
| CACAATTAGGAAGCTAGGGG+TGG | + | chr2_2:13964140-13964159 | None:intergenic | 50.0% | |
| CACCCCTAGCTTCCTAATTG+TGG | - | chr2_2:13964138-13964157 | Msa0239520:CDS | 50.0% | |
| ATGTATTGGGTGTGAAGGGG+TGG | - | chr2_2:13964199-13964218 | Msa0239520:CDS | 50.0% | |
| CTTGCTCTACCACCCTTATC+AGG | - | chr2_2:13964627-13964646 | Msa0239520:intron | 50.0% | |
| CACCAATTGCAAAGACAGGC+AGG | + | chr2_2:13964654-13964673 | None:intergenic | 50.0% | |
| CCTTGCTTCTTCGATGCAGA+AGG | + | chr2_2:13964993-13965012 | None:intergenic | 50.0% | |
| CCTTCTGCATCGAAGAAGCA+AGG | - | chr2_2:13964990-13965009 | Msa0239520:intron | 50.0% | |
| GTGCAAGTCTTACAAGGCTG+TGG | - | chr2_2:13965597-13965616 | Msa0239520:intron | 50.0% | |
| CTCCAATCAGCACATACTCG+TGG | - | chr2_2:13965698-13965717 | Msa0239520:intron | 50.0% | |
| ! | CTCCACGAGTATGTGCTGAT+TGG | + | chr2_2:13965703-13965722 | None:intergenic | 50.0% |
| TAACCCAAGACGGGAGACAT+CGG | - | chr2_2:13965780-13965799 | Msa0239520:CDS | 50.0% | |
| TCATCCAAACACTCGGGTAG+TGG | - | chr2_2:13966414-13966433 | Msa0239520:intron | 50.0% | |
| CATCCAAACACTCGGGTAGT+GGG | - | chr2_2:13966415-13966434 | Msa0239520:intron | 50.0% | |
| TTGATGGAAGGGGTGATCCA+AGG | + | chr2_2:13966457-13966476 | None:intergenic | 50.0% | |
| ATTTCTCCATCATCGGCAGC+AGG | + | chr2_2:13966570-13966589 | None:intergenic | 50.0% | |
| TCAACGGTGTCTTCACCTTC+TGG | - | chr2_2:13966677-13966696 | Msa0239520:intron | 50.0% | |
| TTGGTACGCCCTCAGTTTGG+TGG | + | chr2_2:13964053-13964072 | None:intergenic | 55.0% | |
| !! | AGGTTGGTACGCCCTCAGTT+TGG | + | chr2_2:13964056-13964075 | None:intergenic | 55.0% |
| AGACAGGCAGGCCCTGATAA+GGG | + | chr2_2:13964642-13964661 | None:intergenic | 55.0% | |
| AAGACAGGCAGGCCCTGATA+AGG | + | chr2_2:13964643-13964662 | None:intergenic | 55.0% | |
| GGCCTGCCTGTCTTTGCAAT+TGG | - | chr2_2:13964649-13964668 | Msa0239520:intron | 55.0% | |
| ATGCCGATGTCTCCCGTCTT+GGG | + | chr2_2:13965786-13965805 | None:intergenic | 55.0% | |
| TATGCCGATGTCTCCCGTCT+TGG | + | chr2_2:13965787-13965806 | None:intergenic | 55.0% | |
| ACTCCCACTACCCGAGTGTT+TGG | + | chr2_2:13966421-13966440 | None:intergenic | 55.0% | |
| CTAGGGGTGGACCGCAATGA+AGG | + | chr2_2:13964127-13964146 | None:intergenic | 60.0% | |
| TGGGCGAGATGAGCTGCTGA+AGG | - | chr2_2:13965617-13965636 | Msa0239520:intron | 60.0% | |
| CCATCATCGGCAGCAGGTTC+AGG | + | chr2_2:13966564-13966583 | None:intergenic | 60.0% | |
| CCTGAACCTGCTGCCGATGA+TGG | - | chr2_2:13966561-13966580 | Msa0239520:intron | 60.0% | |
| CAGGCAGGCCCTGATAAGGG+TGG | + | chr2_2:13964639-13964658 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 13962242 | 13966980 | 13962242 | ID=Msa0239520;Name=Msa0239520 |
| chr2_2 | mRNA | 13962242 | 13966980 | 13962242 | ID=Msa0239520-mRNA-1;Parent=Msa0239520;Name=Msa0239520-mRNA-1;_AED=0.09;_eAED=0.09;_QI=186|1|1|1|1|1|11|324|328 |
| chr2_2 | exon | 13962242 | 13962859 | 13962242 | ID=Msa0239520-mRNA-1:exon:5788;Parent=Msa0239520-mRNA-1 |
| chr2_2 | exon | 13963584 | 13963664 | 13963584 | ID=Msa0239520-mRNA-1:exon:5787;Parent=Msa0239520-mRNA-1 |
| chr2_2 | exon | 13963801 | 13963902 | 13963801 | ID=Msa0239520-mRNA-1:exon:5786;Parent=Msa0239520-mRNA-1 |
| chr2_2 | exon | 13964137 | 13964232 | 13964137 | ID=Msa0239520-mRNA-1:exon:5785;Parent=Msa0239520-mRNA-1 |
| chr2_2 | exon | 13964336 | 13964395 | 13964336 | ID=Msa0239520-mRNA-1:exon:5784;Parent=Msa0239520-mRNA-1 |
| chr2_2 | exon | 13964520 | 13964573 | 13964520 | ID=Msa0239520-mRNA-1:exon:5783;Parent=Msa0239520-mRNA-1 |
| chr2_2 | exon | 13965433 | 13965510 | 13965433 | ID=Msa0239520-mRNA-1:exon:5782;Parent=Msa0239520-mRNA-1 |
| chr2_2 | exon | 13965752 | 13965805 | 13965752 | ID=Msa0239520-mRNA-1:exon:5781;Parent=Msa0239520-mRNA-1 |
| chr2_2 | exon | 13965921 | 13966004 | 13965921 | ID=Msa0239520-mRNA-1:exon:5780;Parent=Msa0239520-mRNA-1 |
| chr2_2 | exon | 13966596 | 13966624 | 13966596 | ID=Msa0239520-mRNA-1:exon:5779;Parent=Msa0239520-mRNA-1 |
| chr2_2 | exon | 13966740 | 13966980 | 13966740 | ID=Msa0239520-mRNA-1:exon:5778;Parent=Msa0239520-mRNA-1 |
| chr2_2 | five_prime_UTR | 13966795 | 13966980 | 13966795 | ID=Msa0239520-mRNA-1:five_prime_utr;Parent=Msa0239520-mRNA-1 |
| chr2_2 | CDS | 13966740 | 13966794 | 13966740 | ID=Msa0239520-mRNA-1:cds;Parent=Msa0239520-mRNA-1 |
| chr2_2 | CDS | 13966596 | 13966624 | 13966596 | ID=Msa0239520-mRNA-1:cds;Parent=Msa0239520-mRNA-1 |
| chr2_2 | CDS | 13965921 | 13966004 | 13965921 | ID=Msa0239520-mRNA-1:cds;Parent=Msa0239520-mRNA-1 |
| chr2_2 | CDS | 13965752 | 13965805 | 13965752 | ID=Msa0239520-mRNA-1:cds;Parent=Msa0239520-mRNA-1 |
| chr2_2 | CDS | 13965433 | 13965510 | 13965433 | ID=Msa0239520-mRNA-1:cds;Parent=Msa0239520-mRNA-1 |
| chr2_2 | CDS | 13964520 | 13964573 | 13964520 | ID=Msa0239520-mRNA-1:cds;Parent=Msa0239520-mRNA-1 |
| chr2_2 | CDS | 13964336 | 13964395 | 13964336 | ID=Msa0239520-mRNA-1:cds;Parent=Msa0239520-mRNA-1 |
| chr2_2 | CDS | 13964137 | 13964232 | 13964137 | ID=Msa0239520-mRNA-1:cds;Parent=Msa0239520-mRNA-1 |
| chr2_2 | CDS | 13963801 | 13963902 | 13963801 | ID=Msa0239520-mRNA-1:cds;Parent=Msa0239520-mRNA-1 |
| chr2_2 | CDS | 13963584 | 13963664 | 13963584 | ID=Msa0239520-mRNA-1:cds;Parent=Msa0239520-mRNA-1 |
| chr2_2 | CDS | 13962566 | 13962859 | 13962566 | ID=Msa0239520-mRNA-1:cds;Parent=Msa0239520-mRNA-1 |
| chr2_2 | three_prime_UTR | 13962242 | 13962565 | 13962242 | ID=Msa0239520-mRNA-1:three_prime_utr;Parent=Msa0239520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
