Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0278220 | AES64662.2 | 79.808 | 416 | 28 | 5 | 1 | 388 | 5 | 392 | 0.0 | 657 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0278220 | sp|F4IW10|EFGM2_ARATH | 48.830 | 342 | 127 | 5 | 73 | 398 | 61 | 370 | 4.53e-94 | 301 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0278220 | G7IFR1 | 79.808 | 416 | 28 | 5 | 1 | 388 | 5 | 392 | 0.0 | 657 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0198050 | Msa0278220 | 0.842778 | 2.100705e-58 | -8.615850e-47 |
| Msa0240350 | Msa0278220 | 0.811669 | 6.236522e-51 | -8.615850e-47 |
| Msa0278220 | Msa0308720 | 0.893002 | 9.425177e-75 | -8.615850e-47 |
| Msa0278220 | Msa0317680 | 0.830835 | 2.348189e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0278220 | MtrunA17_Chr2g0291321 | 80.208 | 384 | 25 | 3 | 1 | 337 | 5 | 384 | 0.0 | 617 |
| Msa0278220 | MtrunA17_Chr2g0291331 | 63.202 | 356 | 72 | 6 | 65 | 387 | 12 | 341 | 1.29e-142 | 416 |
| Msa0278220 | MtrunA17_Chr2g0291381 | 66.782 | 289 | 70 | 3 | 75 | 337 | 6 | 294 | 4.53e-131 | 379 |
| Msa0278220 | MtrunA17_Chr2g0291391 | 53.911 | 358 | 76 | 5 | 3 | 312 | 1 | 317 | 2.64e-117 | 345 |
| Msa0278220 | MtrunA17_Chr2g0291361 | 57.556 | 311 | 84 | 3 | 75 | 337 | 6 | 316 | 3.89e-114 | 337 |
| Msa0278220 | MtrunA17_Chr2g0291831 | 56.587 | 334 | 95 | 11 | 73 | 387 | 65 | 367 | 9.87e-111 | 334 |
| Msa0278220 | MtrunA17_Chr7g0231931 | 47.733 | 419 | 144 | 9 | 3 | 398 | 1 | 367 | 2.85e-109 | 338 |
| Msa0278220 | MtrunA17_Chr2g0286711 | 46.860 | 414 | 141 | 11 | 11 | 398 | 1 | 361 | 4.42e-97 | 306 |
| Msa0278220 | MtrunA17_Chr2g0291811 | 52.795 | 322 | 96 | 11 | 73 | 379 | 28 | 308 | 9.77e-86 | 269 |
| Msa0278220 | MtrunA17_Chr2g0291351 | 68.817 | 186 | 55 | 2 | 148 | 331 | 5 | 189 | 6.27e-80 | 245 |
| Msa0278220 | MtrunA17_Chr2g0310991 | 60.976 | 205 | 47 | 3 | 194 | 388 | 1 | 182 | 1.32e-77 | 239 |
| Msa0278220 | MtrunA17_Chr2g0311061 | 73.387 | 124 | 28 | 1 | 194 | 312 | 1 | 124 | 1.25e-58 | 187 |
| Msa0278220 | MtrunA17_Chr4g0025761 | 34.759 | 374 | 177 | 7 | 54 | 398 | 36 | 371 | 9.50e-56 | 189 |
| Msa0278220 | MtrunA17_Chr3g0082331 | 34.146 | 369 | 168 | 10 | 54 | 390 | 36 | 361 | 4.23e-53 | 184 |
| Msa0278220 | MtrunA17_Chr2g0291421 | 41.502 | 253 | 83 | 6 | 3 | 226 | 1 | 217 | 1.51e-52 | 176 |
| Msa0278220 | MtrunA17_Chr2g0310931 | 65.546 | 119 | 41 | 0 | 194 | 312 | 1 | 119 | 1.01e-47 | 159 |
| Msa0278220 | MtrunA17_Chr6g0459191 | 38.095 | 231 | 92 | 5 | 194 | 398 | 1 | 206 | 1.32e-41 | 149 |
| Msa0278220 | MtrunA17_Chr2g0291301 | 42.995 | 207 | 67 | 5 | 73 | 228 | 26 | 232 | 3.35e-41 | 146 |
| Msa0278220 | MtrunA17_Chr4g0056591 | 32.673 | 303 | 173 | 5 | 78 | 378 | 93 | 366 | 4.01e-39 | 149 |
| Msa0278220 | MtrunA17_Chr2g0310881 | 70.000 | 90 | 21 | 1 | 222 | 305 | 43 | 132 | 4.85e-34 | 124 |
| Msa0278220 | MtrunA17_Chr8g0391041 | 34.156 | 243 | 92 | 7 | 194 | 396 | 1 | 215 | 1.06e-29 | 117 |
| Msa0278220 | MtrunA17_Chr8g0391581 | 31.674 | 221 | 126 | 8 | 53 | 257 | 9 | 220 | 1.39e-23 | 99.0 |
| Msa0278220 | MtrunA17_Chr8g0391571 | 40.299 | 134 | 49 | 4 | 274 | 398 | 1 | 112 | 1.62e-18 | 83.6 |
| Msa0278220 | MtrunA17_Chr7g0215051 | 75.000 | 40 | 10 | 0 | 182 | 221 | 35 | 74 | 1.86e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0278220 | AT2G45030.1 | 48.830 | 342 | 127 | 5 | 73 | 398 | 61 | 370 | 4.61e-95 | 301 |
| Msa0278220 | AT1G45332.1 | 48.538 | 342 | 128 | 5 | 73 | 398 | 61 | 370 | 3.09e-94 | 300 |
| Msa0278220 | AT1G45332.2 | 52.804 | 214 | 68 | 3 | 194 | 398 | 1 | 190 | 1.60e-64 | 217 |
| Msa0278220 | AT1G62750.1 | 33.333 | 306 | 167 | 6 | 78 | 378 | 97 | 370 | 1.45e-39 | 151 |
Find 119 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGATCTCGTGCAATTAA+AGG | 0.175815 | 2_3:+11180089 | Msa0278220:CDS |
| CTCAAGATCAGCTGCTGATA+TGG | 0.203048 | 2_3:-11180339 | None:intergenic |
| GGAAGCTTTCTTCTATTATA+AGG | 0.245246 | 2_3:+11181074 | Msa0278220:CDS |
| AGAAGGCTTACAAGTATATT+AGG | 0.258014 | 2_3:+11181106 | Msa0278220:CDS |
| CGGAGCAGCCGCGCAACATC+TGG | 0.280393 | 2_3:+11178842 | Msa0278220:CDS |
| GGATGCTAGGTGTGAAATTC+AGG | 0.291625 | 2_3:+11179068 | Msa0278220:CDS |
| TGTTTCTTATTGCAGAATAA+TGG | 0.305165 | 2_3:+11180196 | Msa0278220:intron |
| AAATTATATTCCAAGCCTAT+TGG | 0.308761 | 2_3:-11180057 | None:intergenic |
| CTTGTTCTTAATAGTGTTGA+TGG | 0.313861 | 2_3:+11179493 | Msa0278220:CDS |
| AGATGGAGTGGCGGTGGAGG+AGG | 0.329057 | 2_3:-11178797 | None:intergenic |
| GGGTAGTGCTTTCAAATATA+AGG | 0.342582 | 2_3:+11180652 | Msa0278220:CDS |
| GAAATTTATACCATTATTCA+TGG | 0.365364 | 2_3:+11180631 | Msa0278220:CDS |
| TGAAGAACTTCCTGCAGATA+TGG | 0.380602 | 2_3:+11180226 | Msa0278220:CDS |
| CTCACCGGTGATTGTAGTTC+CGG | 0.382773 | 2_3:+11182580 | Msa0278220:CDS |
| TTAGCCGCACAGTTCTCAAC+TGG | 0.403220 | 2_3:+11179163 | Msa0278220:CDS |
| GTTTCAGAAACAGACCCATT+TGG | 0.405371 | 2_3:-11180129 | None:intergenic |
| GTCATGGCGGAAGCTAGGTT+TGG | 0.409043 | 2_3:+11179128 | Msa0278220:CDS |
| AAAGCACTACCCATGAATAA+TGG | 0.418480 | 2_3:-11180641 | None:intergenic |
| GAGGCGCTGCATTGAAGGCC+TGG | 0.418942 | 2_3:-11178764 | None:intergenic |
| AAGTGACGGAGGTGGAAAGA+TGG | 0.421290 | 2_3:-11178814 | None:intergenic |
| TCAAGATCAGCTGCTGATAT+GGG | 0.426594 | 2_3:-11180338 | None:intergenic |
| GAAAGATGGAGTGGCGGTGG+AGG | 0.427450 | 2_3:-11178800 | None:intergenic |
| GCCGCTCAGGTGAGAGGCGG+TGG | 0.430325 | 2_3:-11178951 | None:intergenic |
| TAGAGGAGGCGCTGCATTGA+AGG | 0.430387 | 2_3:-11178769 | None:intergenic |
| GCTGCAGTTCAAGTTCCAAT+AGG | 0.431611 | 2_3:+11180042 | Msa0278220:CDS |
| TCCGTGGGAAGTTGTGAATC+AGG | 0.435444 | 2_3:+11179612 | Msa0278220:CDS |
| CGCAACATCTGGGTTACTAC+AGG | 0.436772 | 2_3:+11178853 | Msa0278220:CDS |
| TATAAATTTCCGTGCTATAG+TGG | 0.454451 | 2_3:-11180618 | None:intergenic |
| GTGGAAAGATGGAGTGGCGG+TGG | 0.456642 | 2_3:-11178803 | None:intergenic |
| TCCTGCAGATATGGAAGCCT+TGG | 0.458062 | 2_3:+11180235 | Msa0278220:CDS |
| CTACGCAACGTCTGGATCTC+GGG | 0.466125 | 2_3:+11178973 | Msa0278220:CDS |
| CTGAGCGGCTACGCAACGTC+TGG | 0.470128 | 2_3:+11178965 | Msa0278220:CDS |
| TACCTTCTCTGTCGGGTCGA+TGG | 0.470279 | 2_3:-11178878 | None:intergenic |
| GGAGTGAAATGAACATGATC+AGG | 0.475230 | 2_3:-11179430 | None:intergenic |
| TCATGGCGGAAGCTAGGTTT+GGG | 0.476054 | 2_3:+11179129 | Msa0278220:CDS |
| GATTTGCTCCCTTGTGGTCA+AGG | 0.476144 | 2_3:-11179591 | None:intergenic |
| GCTACGCAACGTCTGGATCT+CGG | 0.476690 | 2_3:+11178972 | Msa0278220:CDS |
| CGCAGAGCATTCTTAACCTC+AGG | 0.479868 | 2_3:-11179451 | None:intergenic |
| CGGAAGCTAGGTTTGGGAAA+AGG | 0.481248 | 2_3:+11179135 | Msa0278220:CDS |
| CGCCACCACCACCATGATCA+TGG | 0.481555 | 2_3:+11178732 | None:intergenic |
| GGCGACAGTTACGGCTGCTC+CGG | 0.485087 | 2_3:+11182622 | Msa0278220:CDS |
| CAGACGTTGCGTAGCCGCTC+AGG | 0.485503 | 2_3:-11178964 | None:intergenic |
| CAAGAGTCATGGCGGAAGCT+AGG | 0.489152 | 2_3:+11179123 | Msa0278220:CDS |
| TTAGAATTAATAGCTTCAGT+TGG | 0.491602 | 2_3:-11181823 | None:intergenic |
| CATTGTTGTCGATAAGCAAA+TGG | 0.494110 | 2_3:+11179531 | Msa0278220:CDS |
| GTACAGGGGTACAACTACTT+TGG | 0.495334 | 2_3:+11181774 | Msa0278220:intron |
| AGCTGCTCCGGCGACAGTTA+CGG | 0.496717 | 2_3:+11182613 | Msa0278220:CDS |
| TCTCTCGGTTAAAAGAAGCT+TGG | 0.499909 | 2_3:-11179010 | None:intergenic |
| GACCACTGCGATTGCCTCAC+CGG | 0.501564 | 2_3:+11182565 | Msa0278220:CDS |
| CATGGCATTACCTTCTCTGT+CGG | 0.504219 | 2_3:-11178886 | None:intergenic |
| ATTTGGACCATGAAAATAGT+AGG | 0.506476 | 2_3:-11180112 | None:intergenic |
| AATGCTCTGCGTGCCTTCGA+CGG | 0.507197 | 2_3:+11179463 | Msa0278220:CDS |
| GGAGAAGCTATAGTTGTATC+CGG | 0.515129 | 2_3:-11182641 | None:intergenic |
| TTATAAGGCTTTGTTACAGA+AGG | 0.516424 | 2_3:+11181089 | Msa0278220:CDS |
| TTGTTAATGAATACAAGTCT+TGG | 0.518605 | 2_3:-11179568 | None:intergenic |
| AGGTGAGAGGCGGTGGAAAG+TGG | 0.519439 | 2_3:-11178944 | None:intergenic |
| CACGGGTGAGATCGATAAGA+TGG | 0.520551 | 2_3:+11179044 | Msa0278220:CDS |
| ATGGCATTACCTTCTCTGTC+GGG | 0.522546 | 2_3:-11178885 | None:intergenic |
| ACCAAGGCTTCCATATCTGC+AGG | 0.524207 | 2_3:-11180236 | None:intergenic |
| TCGGTTAAAAGAAGCTTGGA+AGG | 0.529967 | 2_3:-11179006 | None:intergenic |
| CCCACGGATTTGCTCCCTTG+TGG | 0.530564 | 2_3:-11179597 | None:intergenic |
| AACAAGTACGGCACCGTCGA+AGG | 0.531702 | 2_3:-11179476 | None:intergenic |
| AACACTATTAAGAACAAGTA+CGG | 0.531837 | 2_3:-11179488 | None:intergenic |
| TGATCATGGCACATTTCTCC+AGG | 0.533857 | 2_3:+11178746 | Msa0278220:CDS |
| GGCGACAGTTACAGCTGCTC+CGG | 0.537393 | 2_3:+11182601 | Msa0278220:CDS |
| GGAGCAGCCGCGCAACATCT+GGG | 0.541399 | 2_3:+11178843 | Msa0278220:CDS |
| ACCTGATTCACAACTTCCCA+CGG | 0.544036 | 2_3:-11179613 | None:intergenic |
| GAGGCGGTGGAAAGTGGCGG+TGG | 0.548263 | 2_3:-11178938 | None:intergenic |
| AGTTCAAGTTCCAATAGGCT+TGG | 0.548353 | 2_3:+11180047 | Msa0278220:CDS |
| AGCTATTAATTCTAAGAATG+AGG | 0.548422 | 2_3:+11181831 | Msa0278220:CDS |
| TCGATAAGATGGAGGATGCT+AGG | 0.551120 | 2_3:+11179055 | Msa0278220:CDS |
| CGGTGGAGGAGGAGTAGTAG+AGG | 0.551999 | 2_3:-11178786 | None:intergenic |
| TGCGTAGCCGCTCAGGTGAG+AGG | 0.553102 | 2_3:-11178957 | None:intergenic |
| CATTAACAACCTTGACCACA+AGG | 0.565447 | 2_3:+11179582 | Msa0278220:CDS |
| TCATGTTCATTTCACTCCTG+AGG | 0.568875 | 2_3:+11179435 | Msa0278220:CDS |
| TGAGAGGCGGTGGAAAGTGG+CGG | 0.570582 | 2_3:-11178941 | None:intergenic |
| AGGGGTACAACTACTTTGGA+TGG | 0.572897 | 2_3:+11181778 | Msa0278220:intron |
| CATATCAGCAGCTGATCTTG+AGG | 0.573243 | 2_3:+11180340 | Msa0278220:CDS |
| AAATTTATACCATTATTCAT+GGG | 0.573819 | 2_3:+11180632 | Msa0278220:CDS |
| GGAGAAATGTGCCATGATCA+TGG | 0.580361 | 2_3:-11178743 | None:intergenic |
| ATTAATTCTAAGAATGAGGA+AGG | 0.583791 | 2_3:+11181835 | Msa0278220:CDS |
| CGTGTATAACAGTCTTCTCT+CGG | 0.584139 | 2_3:-11179025 | None:intergenic |
| GGAGCAGCCGTAACTGTCGC+CGG | 0.594046 | 2_3:-11182620 | None:intergenic |
| CCACCTCCGTCACTTCTCAA+CGG | 0.594542 | 2_3:+11178822 | Msa0278220:CDS |
| TAGCCGCACAGTTCTCAACT+GGG | 0.595186 | 2_3:+11179164 | Msa0278220:CDS |
| ACCACAAGGGAGCAAATCCG+TGG | 0.595291 | 2_3:+11179596 | Msa0278220:CDS |
| GTCCATCGACCCGACAGAGA+AGG | 0.596527 | 2_3:+11178876 | Msa0278220:CDS |
| CTTATATTAAACAAGAGTCA+TGG | 0.604314 | 2_3:+11179112 | Msa0278220:CDS |
| GGAGCAGCTGTAACTGTCGC+CGG | 0.604938 | 2_3:-11182599 | None:intergenic |
| CGAGAGAAGACTGTTATACA+CGG | 0.608733 | 2_3:+11179026 | Msa0278220:CDS |
| GCTGCTCCGTTGAGAAGTGA+CGG | 0.614318 | 2_3:-11178828 | None:intergenic |
| TGGAGGAGGAGTAGTAGAGG+AGG | 0.616889 | 2_3:-11178783 | None:intergenic |
| CATTTGCTTATCGACAACAA+TGG | 0.617902 | 2_3:-11179530 | None:intergenic |
| GGTGAGGCAATCGCAGTGGT+CGG | 0.618943 | 2_3:-11182563 | None:intergenic |
| CCGTTGAGAAGTGACGGAGG+TGG | 0.621155 | 2_3:-11178822 | None:intergenic |
| AAAGAAGCTTGGAAGGGTCA+AGG | 0.621335 | 2_3:-11178999 | None:intergenic |
| TCAGTATGACGAATCATGCA+TGG | 0.626238 | 2_3:-11178904 | None:intergenic |
| GGTGGATGATAAACTTGCTG+AGG | 0.628077 | 2_3:+11180298 | Msa0278220:CDS |
| GTCGCCGGAACTACAATCAC+CGG | 0.630872 | 2_3:-11182584 | None:intergenic |
| CGGTTAAAAGAAGCTTGGAA+GGG | 0.631366 | 2_3:-11179005 | None:intergenic |
| TTCGTAGAGCCACTATAGCA+CGG | 0.634903 | 2_3:+11180609 | Msa0278220:CDS |
| GCAACATCTGGGTTACTACA+GGG | 0.640696 | 2_3:+11178854 | Msa0278220:CDS |
| GCTTATCGACAACAATGGAG+TGG | 0.648034 | 2_3:-11179525 | None:intergenic |
| GTAGTAACCCAGATGTTGCG+CGG | 0.654591 | 2_3:-11178850 | None:intergenic |
| ACGGAGGTGGAAAGATGGAG+TGG | 0.657128 | 2_3:-11178809 | None:intergenic |
| TTAATAGCTTCAGTTGGACA+CGG | 0.663270 | 2_3:-11181817 | None:intergenic |
| CACCGGTGAGGCAATCGCAG+TGG | 0.669579 | 2_3:-11182567 | None:intergenic |
| GAGGTGGAAAGATGGAGTGG+CGG | 0.674783 | 2_3:-11178806 | None:intergenic |
| GGGTGAGATCGATAAGATGG+AGG | 0.685319 | 2_3:+11179047 | Msa0278220:CDS |
| ATTAACAACCTTGACCACAA+GGG | 0.687442 | 2_3:+11179583 | Msa0278220:CDS |
| CCACAAGGGAGCAAATCCGT+GGG | 0.687803 | 2_3:+11179597 | Msa0278220:CDS |
| GAGAGAAGACTGTTATACAC+GGG | 0.689434 | 2_3:+11179027 | Msa0278220:CDS |
| GTAGCCGCTCAGGTGAGAGG+CGG | 0.694575 | 2_3:-11178954 | None:intergenic |
| TTAGGAGACAAAGCACCAAG+AGG | 0.699757 | 2_3:+11181124 | Msa0278220:CDS |
| GCTCCGTTGAGAAGTGACGG+AGG | 0.703971 | 2_3:-11178825 | None:intergenic |
| CGGAACTACAATCACCGGTG+AGG | 0.719322 | 2_3:-11182579 | None:intergenic |
| TCCACCGCCTCTCACCTGAG+CGG | 0.737449 | 2_3:+11178950 | Msa0278220:CDS |
| ATATTAAACAAGAGTCATGG+CGG | 0.763848 | 2_3:+11179115 | Msa0278220:CDS |
| ACACCCAGTTGAGAACTGTG+CGG | 0.802518 | 2_3:-11179167 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAATTTGAGTATTAT+AGG | - | chr2_3:11179955-11179974 | None:intergenic | 10.0% |
| !! | ATTATTTACAAAATAAGATT+TGG | - | chr2_3:11180554-11180573 | None:intergenic | 10.0% |
| !! | AAATTTATACCATTATTCAT+GGG | + | chr2_3:11180632-11180651 | Msa0278220:CDS | 15.0% |
| !!! | ATTATGATCTAATTTAGTTT+GGG | + | chr2_3:11180728-11180747 | Msa0278220:intron | 15.0% |
| !! | AGAATATTATGTCTTATATT+AGG | - | chr2_3:11181238-11181257 | None:intergenic | 15.0% |
| !! | CAATGATAATTAGATATTAC+AGG | - | chr2_3:11179897-11179916 | None:intergenic | 20.0% |
| !! | TATCTAATTATCATTGACAT+TGG | + | chr2_3:11179901-11179920 | Msa0278220:intron | 20.0% |
| !!! | ATCATTTTGTTACATTTTTC+AGG | + | chr2_3:11179993-11180012 | Msa0278220:intron | 20.0% |
| !!! | AGTTTTGCATACTAATTAAT+TGG | + | chr2_3:11180398-11180417 | Msa0278220:intron | 20.0% |
| !!! | ATTTTCTCATGTTTTTGTTT+TGG | + | chr2_3:11180438-11180457 | Msa0278220:intron | 20.0% |
| !!! | TTTGTTATTATTGAGTTTGT+AGG | + | chr2_3:11180580-11180599 | Msa0278220:intron | 20.0% |
| !! | GAAATTTATACCATTATTCA+TGG | + | chr2_3:11180631-11180650 | Msa0278220:CDS | 20.0% |
| !! | GATTATGATCTAATTTAGTT+TGG | + | chr2_3:11180727-11180746 | Msa0278220:intron | 20.0% |
| !! | TAAGTAGATTTATATGACAA+TGG | - | chr2_3:11180892-11180911 | None:intergenic | 20.0% |
| !! | ATCATACATAACTATTGTAA+GGG | - | chr2_3:11181026-11181045 | None:intergenic | 20.0% |
| !! | AATCATACATAACTATTGTA+AGG | - | chr2_3:11181027-11181046 | None:intergenic | 20.0% |
| !! | TATATTTCAAAAGACTATGT+TGG | + | chr2_3:11181474-11181493 | Msa0278220:intron | 20.0% |
| !!! | TTTTTTATTTTTGCTGTTTC+TGG | + | chr2_3:11181752-11181771 | Msa0278220:intron | 20.0% |
| !! | ATTTCTTTGATTATGAATTG+TGG | - | chr2_3:11182443-11182462 | None:intergenic | 20.0% |
| !!! | AATACTCTAGAATCTTTATA+TGG | + | chr2_3:11182509-11182528 | Msa0278220:intron | 20.0% |
| !! | AGAATCTTTATATGGTATAA+TGG | + | chr2_3:11182517-11182536 | Msa0278220:intron | 20.0% |
| ! | CTTATATTAAACAAGAGTCA+TGG | + | chr2_3:11179112-11179131 | Msa0278220:CDS | 25.0% |
| ! | ACAAAACTCAATAATGTTCT+TGG | + | chr2_3:11179336-11179355 | Msa0278220:intron | 25.0% |
| ! | AACACTATTAAGAACAAGTA+CGG | - | chr2_3:11179491-11179510 | None:intergenic | 25.0% |
| ! | TTGTTAATGAATACAAGTCT+TGG | - | chr2_3:11179571-11179590 | None:intergenic | 25.0% |
| ! | GGTAAACTTACTTAGATTAA+TGG | + | chr2_3:11179633-11179652 | Msa0278220:intron | 25.0% |
| !! | ACTTACTTAGATTAATGGAT+TGG | + | chr2_3:11179638-11179657 | Msa0278220:intron | 25.0% |
| !!! | TCATACTGCTATTTTTAACA+TGG | + | chr2_3:11179759-11179778 | Msa0278220:intron | 25.0% |
| !!! | CATACTGCTATTTTTAACAT+GGG | + | chr2_3:11179760-11179779 | Msa0278220:intron | 25.0% |
| ! | AAATTATATTCCAAGCCTAT+TGG | - | chr2_3:11180060-11180079 | None:intergenic | 25.0% |
| !! | AGGCTTGGAATATAATTTTA+AGG | + | chr2_3:11180062-11180081 | Msa0278220:CDS | 25.0% |
| !! | GGCTTGGAATATAATTTTAA+GGG | + | chr2_3:11180063-11180082 | Msa0278220:CDS | 25.0% |
| !!! | AACTTTTTCATTTGTTATGC+CGG | + | chr2_3:11180149-11180168 | Msa0278220:intron | 25.0% |
| ! | TGTTTCTTATTGCAGAATAA+TGG | + | chr2_3:11180196-11180215 | Msa0278220:intron | 25.0% |
| ! | ACAAAATAAGATTTGGAGAT+GGG | - | chr2_3:11180547-11180566 | None:intergenic | 25.0% |
| ! | TACAAAATAAGATTTGGAGA+TGG | - | chr2_3:11180548-11180567 | None:intergenic | 25.0% |
| !! | AAAAATTTTGCATAGTGTGA+AGG | - | chr2_3:11180826-11180845 | None:intergenic | 25.0% |
| !! | TTCACACTATGCAAAATTTT+TGG | + | chr2_3:11180825-11180844 | Msa0278220:intron | 25.0% |
| ! | TTAGACTGTTGTTCTTAATA+GGG | - | chr2_3:11181182-11181201 | None:intergenic | 25.0% |
| ! | TTTAGACTGTTGTTCTTAAT+AGG | - | chr2_3:11181183-11181202 | None:intergenic | 25.0% |
| ! | AAACATTTGTTTAGACTTGA+AGG | + | chr2_3:11181200-11181219 | Msa0278220:intron | 25.0% |
| ! | AACATTTGTTTAGACTTGAA+GGG | + | chr2_3:11181201-11181220 | Msa0278220:intron | 25.0% |
| !! | AAATACAGAATCTTCAAGTT+TGG | - | chr2_3:11181419-11181438 | None:intergenic | 25.0% |
| ! | CTATGTTGGTATTATAGTAT+TGG | + | chr2_3:11181488-11181507 | Msa0278220:intron | 25.0% |
| ! | AAATCAATGTTGTCAAATAG+TGG | - | chr2_3:11181704-11181723 | None:intergenic | 25.0% |
| ! | TTAGAATTAATAGCTTCAGT+TGG | - | chr2_3:11181826-11181845 | None:intergenic | 25.0% |
| !! | AGCTATTAATTCTAAGAATG+AGG | + | chr2_3:11181831-11181850 | Msa0278220:CDS | 25.0% |
| !! | ATTAATTCTAAGAATGAGGA+AGG | + | chr2_3:11181835-11181854 | Msa0278220:CDS | 25.0% |
| ! | TCATTCAATTGTCTTTGAAT+TGG | - | chr2_3:11181863-11181882 | None:intergenic | 25.0% |
| ! | TATAATAGAAGAAAGAACCT+AGG | + | chr2_3:11181908-11181927 | Msa0278220:intron | 25.0% |
| ! | TATATTTATAACTGCATCCT+AGG | - | chr2_3:11182397-11182416 | None:intergenic | 25.0% |
| ATATTAAACAAGAGTCATGG+CGG | + | chr2_3:11179115-11179134 | Msa0278220:CDS | 30.0% | |
| GGTTTGCATTATTCATGAAA+TGG | + | chr2_3:11179357-11179376 | Msa0278220:intron | 30.0% | |
| ! | CTTGTTCTTAATAGTGTTGA+TGG | + | chr2_3:11179493-11179512 | Msa0278220:CDS | 30.0% |
| !! | TAATGGATTGGATAGATTCT+AGG | + | chr2_3:11179650-11179669 | Msa0278220:intron | 30.0% |
| TTGTACTATGTTGTCAATCT+AGG | + | chr2_3:11179675-11179694 | Msa0278220:intron | 30.0% | |
| ACGACACAAAATAGAAACAA+AGG | - | chr2_3:11179720-11179739 | None:intergenic | 30.0% | |
| ! | TTAAAGGCCTACTATTTTCA+TGG | + | chr2_3:11180105-11180124 | Msa0278220:CDS | 30.0% |
| ATTTGGACCATGAAAATAGT+AGG | - | chr2_3:11180115-11180134 | None:intergenic | 30.0% | |
| ! | TACTATTTTCATGGTCCAAA+TGG | + | chr2_3:11180114-11180133 | Msa0278220:CDS | 30.0% |
| ! | ACTATTTTCATGGTCCAAAT+GGG | + | chr2_3:11180115-11180134 | Msa0278220:CDS | 30.0% |
| GTAATTCGAAGAATAAACAC+CGG | - | chr2_3:11180171-11180190 | None:intergenic | 30.0% | |
| AAAATAAGATTTGGAGATGG+GGG | - | chr2_3:11180545-11180564 | None:intergenic | 30.0% | |
| CAAAATAAGATTTGGAGATG+GGG | - | chr2_3:11180546-11180565 | None:intergenic | 30.0% | |
| TATAAATTTCCGTGCTATAG+TGG | - | chr2_3:11180621-11180640 | None:intergenic | 30.0% | |
| GATAAAAATTAAGAGTCTGC+AGG | - | chr2_3:11180692-11180711 | None:intergenic | 30.0% | |
| ! | TGGAAAAGCTTAAAAAGTAC+TGG | - | chr2_3:11181001-11181020 | None:intergenic | 30.0% |
| ACATAACTATTGTAAGGGAA+TGG | - | chr2_3:11181021-11181040 | None:intergenic | 30.0% | |
| GGAAGCTTTCTTCTATTATA+AGG | + | chr2_3:11181074-11181093 | Msa0278220:CDS | 30.0% | |
| !! | TTATAAGGCTTTGTTACAGA+AGG | + | chr2_3:11181089-11181108 | Msa0278220:CDS | 30.0% |
| AGAAGGCTTACAAGTATATT+AGG | + | chr2_3:11181106-11181125 | Msa0278220:CDS | 30.0% | |
| CATGTCAGAGAATATTATGA+GGG | - | chr2_3:11181358-11181377 | None:intergenic | 30.0% | |
| TTTGGATCATATTAGTGTTC+GGG | - | chr2_3:11181401-11181420 | None:intergenic | 30.0% | |
| GTTTGGATCATATTAGTGTT+CGG | - | chr2_3:11181402-11181421 | None:intergenic | 30.0% | |
| !!! | AGAATTTTTTGCAACAGCTA+TGG | - | chr2_3:11181662-11181681 | None:intergenic | 30.0% |
| TGTGGTTACAATTTACAATG+TGG | - | chr2_3:11182425-11182444 | None:intergenic | 30.0% | |
| CATTTGCTTATCGACAACAA+TGG | - | chr2_3:11179533-11179552 | None:intergenic | 35.0% | |
| CATTGTTGTCGATAAGCAAA+TGG | + | chr2_3:11179531-11179550 | Msa0278220:CDS | 35.0% | |
| ATTAACAACCTTGACCACAA+GGG | + | chr2_3:11179583-11179602 | Msa0278220:CDS | 35.0% | |
| ! | ATGTTGTCAATCTAGGATAG+TGG | + | chr2_3:11179682-11179701 | Msa0278220:intron | 35.0% |
| TGTTGATCTCGTGCAATTAA+AGG | + | chr2_3:11180089-11180108 | Msa0278220:CDS | 35.0% | |
| ACTCATAAAAACTGTGTCAG+AGG | + | chr2_3:11180277-11180296 | Msa0278220:CDS | 35.0% | |
| AAATAAGATTTGGAGATGGG+GGG | - | chr2_3:11180544-11180563 | None:intergenic | 35.0% | |
| ! | AAAGCACTACCCATGAATAA+TGG | - | chr2_3:11180644-11180663 | None:intergenic | 35.0% |
| GGGTAGTGCTTTCAAATATA+AGG | + | chr2_3:11180652-11180671 | Msa0278220:CDS | 35.0% | |
| AAAATTAAGAGTCTGCAGGA+GGG | - | chr2_3:11180688-11180707 | None:intergenic | 35.0% | |
| AAAAATTAAGAGTCTGCAGG+AGG | - | chr2_3:11180689-11180708 | None:intergenic | 35.0% | |
| AATTTCCAAAGTGAAGTCTC+TGG | - | chr2_3:11180758-11180777 | None:intergenic | 35.0% | |
| TTGCGTTCTTAGTATGATGA+TGG | + | chr2_3:11180789-11180808 | Msa0278220:intron | 35.0% | |
| !!! | CTATGCAAAATTTTTGGAGC+TGG | + | chr2_3:11180831-11180850 | Msa0278220:intron | 35.0% |
| !! | CTACCATTCTTTTGAAAAGC+TGG | + | chr2_3:11181053-11181072 | Msa0278220:intron | 35.0% |
| ! | CTTCCAGCTTTTCAAAAGAA+TGG | - | chr2_3:11181059-11181078 | None:intergenic | 35.0% |
| GCATGTCAGAGAATATTATG+AGG | - | chr2_3:11181359-11181378 | None:intergenic | 35.0% | |
| ATGGAGTTAACGATTACAGA+TGG | + | chr2_3:11181547-11181566 | Msa0278220:intron | 35.0% | |
| ! | GGATTTTAGGCCTTCTTATA+TGG | - | chr2_3:11181577-11181596 | None:intergenic | 35.0% |
| !!! | ATTTTTGCTGTTTCTGGTAC+AGG | + | chr2_3:11181758-11181777 | Msa0278220:intron | 35.0% |
| !!! | TTTTTGCTGTTTCTGGTACA+GGG | + | chr2_3:11181759-11181778 | Msa0278220:intron | 35.0% |
| TTAATAGCTTCAGTTGGACA+CGG | - | chr2_3:11181820-11181839 | None:intergenic | 35.0% | |
| GATTCAGTTGAGTCAGTTAA+AGG | - | chr2_3:11182282-11182301 | None:intergenic | 35.0% | |
| TCAGTATGACGAATCATGCA+TGG | - | chr2_3:11178907-11178926 | None:intergenic | 40.0% | |
| CGGTTAAAAGAAGCTTGGAA+GGG | - | chr2_3:11179008-11179027 | None:intergenic | 40.0% | |
| TCGGTTAAAAGAAGCTTGGA+AGG | - | chr2_3:11179009-11179028 | None:intergenic | 40.0% | |
| TCTCTCGGTTAAAAGAAGCT+TGG | - | chr2_3:11179013-11179032 | None:intergenic | 40.0% | |
| CGTGTATAACAGTCTTCTCT+CGG | - | chr2_3:11179028-11179047 | None:intergenic | 40.0% | |
| CGAGAGAAGACTGTTATACA+CGG | + | chr2_3:11179026-11179045 | Msa0278220:CDS | 40.0% | |
| GAGAGAAGACTGTTATACAC+GGG | + | chr2_3:11179027-11179046 | Msa0278220:CDS | 40.0% | |
| CAGATCTCACTTTCTTCAAC+TGG | + | chr2_3:11179217-11179236 | Msa0278220:intron | 40.0% | |
| ATCTCACTTTCTTCAACTGG+AGG | + | chr2_3:11179220-11179239 | Msa0278220:intron | 40.0% | |
| TCTCACTTTCTTCAACTGGA+GGG | + | chr2_3:11179221-11179240 | Msa0278220:intron | 40.0% | |
| CAACTGGAGGGAAAACTATA+AGG | + | chr2_3:11179233-11179252 | Msa0278220:intron | 40.0% | |
| GTCAATTACAGTCATCTGCA+AGG | - | chr2_3:11179407-11179426 | None:intergenic | 40.0% | |
| GGAGTGAAATGAACATGATC+AGG | - | chr2_3:11179433-11179452 | None:intergenic | 40.0% | |
| TCATGTTCATTTCACTCCTG+AGG | + | chr2_3:11179435-11179454 | Msa0278220:CDS | 40.0% | |
| CATTAACAACCTTGACCACA+AGG | + | chr2_3:11179582-11179601 | Msa0278220:CDS | 40.0% | |
| ! | AGTTCAAGTTCCAATAGGCT+TGG | + | chr2_3:11180047-11180066 | Msa0278220:CDS | 40.0% |
| GTTTCAGAAACAGACCCATT+TGG | - | chr2_3:11180132-11180151 | None:intergenic | 40.0% | |
| TGAAGAACTTCCTGCAGATA+TGG | + | chr2_3:11180226-11180245 | Msa0278220:CDS | 40.0% | |
| !! | AAGCCTTGGTGTCAGAAAAA+AGG | + | chr2_3:11180249-11180268 | Msa0278220:CDS | 40.0% |
| !!! | ATGCCTTTTTTCTGACACCA+AGG | - | chr2_3:11180255-11180274 | None:intergenic | 40.0% |
| CATAAAAACTGTGTCAGAGG+TGG | + | chr2_3:11180280-11180299 | Msa0278220:CDS | 40.0% | |
| TCAAGATCAGCTGCTGATAT+GGG | - | chr2_3:11180341-11180360 | None:intergenic | 40.0% | |
| AAATTAAGAGTCTGCAGGAG+GGG | - | chr2_3:11180687-11180706 | None:intergenic | 40.0% | |
| !! | AGTATGATGATGGCTACTAG+TGG | + | chr2_3:11180799-11180818 | Msa0278220:intron | 40.0% |
| TGTTAGACATCAATCCCTCT+AGG | + | chr2_3:11181305-11181324 | Msa0278220:intron | 40.0% | |
| AGCGAAGATGATATCCTAGA+GGG | - | chr2_3:11181322-11181341 | None:intergenic | 40.0% | |
| TAGCGAAGATGATATCCTAG+AGG | - | chr2_3:11181323-11181342 | None:intergenic | 40.0% | |
| AGGATATCATCTTCGCTATC+AGG | + | chr2_3:11181325-11181344 | Msa0278220:intron | 40.0% | |
| GAGTTAACGATTACAGATGG+TGG | + | chr2_3:11181550-11181569 | Msa0278220:intron | 40.0% | |
| !! | AGATGGTGGACCATATAAGA+AGG | + | chr2_3:11181564-11181583 | Msa0278220:intron | 40.0% |
| ! | GGCTAAAAGTGGAGGATTTT+AGG | - | chr2_3:11181590-11181609 | None:intergenic | 40.0% |
| ! | GCGTTTTATGGCAGAAATAG+CGG | - | chr2_3:11181611-11181630 | None:intergenic | 40.0% |
| TATGGCCAATTTGTGAAGGA+TGG | - | chr2_3:11181644-11181663 | None:intergenic | 40.0% | |
| ATGTTGTCAAATAGTGGCCA+TGG | - | chr2_3:11181698-11181717 | None:intergenic | 40.0% | |
| !!! | TTTTGCTGTTTCTGGTACAG+GGG | + | chr2_3:11181760-11181779 | Msa0278220:intron | 40.0% |
| AGCTAACAGTTAGATAGCCT+AGG | - | chr2_3:11181928-11181947 | None:intergenic | 40.0% | |
| TCGATTCACTAGTATGGTGA+GGG | - | chr2_3:11182025-11182044 | None:intergenic | 40.0% | |
| TTCGATTCACTAGTATGGTG+AGG | - | chr2_3:11182026-11182045 | None:intergenic | 40.0% | |
| CTAGGTTCGATTCACTAGTA+TGG | - | chr2_3:11182031-11182050 | None:intergenic | 40.0% | |
| TTGAAGTAGTACTTATCCCC+AGG | - | chr2_3:11182122-11182141 | None:intergenic | 40.0% | |
| TTGAGCTACTAGCTCAAAGT+GGG | - | chr2_3:11182085-11182104 | None:intergenic | 40.0% | |
| ATTGAGCTACTAGCTCAAAG+TGG | - | chr2_3:11182086-11182105 | None:intergenic | 40.0% | |
| CTTTGAGCTAGTAGCTCAAT+TGG | + | chr2_3:11182086-11182105 | Msa0278220:intron | 40.0% | |
| ! | CTAGTAGCTCAATTGGTAGT+GGG | + | chr2_3:11182093-11182112 | Msa0278220:intron | 40.0% |
| TTGAAGTAGTACTTATCCCC+AGG | + | chr2_3:11182122-11182141 | Msa0278220:intron | 40.0% | |
| TCAGTTGAGTCAGTTAAAGG+TGG | - | chr2_3:11182279-11182298 | None:intergenic | 40.0% | |
| GACTCAACTGAATCAGTTAC+TGG | + | chr2_3:11182288-11182307 | Msa0278220:intron | 40.0% | |
| TTATAACTGCATCCTAGGAC+TGG | - | chr2_3:11182392-11182411 | None:intergenic | 40.0% | |
| AGAGAATCTGAAGAGAATCG+TGG | - | chr2_3:11182480-11182499 | None:intergenic | 40.0% | |
| GGAGAAGCTATAGTTGTATC+CGG | - | chr2_3:11182644-11182663 | None:intergenic | 40.0% | |
| TGATCATGGCACATTTCTCC+AGG | + | chr2_3:11178746-11178765 | Msa0278220:CDS | 45.0% | |
| GCAACATCTGGGTTACTACA+GGG | + | chr2_3:11178854-11178873 | Msa0278220:CDS | 45.0% | |
| ATGGCATTACCTTCTCTGTC+GGG | - | chr2_3:11178888-11178907 | None:intergenic | 45.0% | |
| CATGGCATTACCTTCTCTGT+CGG | - | chr2_3:11178889-11178908 | None:intergenic | 45.0% | |
| AAAGAAGCTTGGAAGGGTCA+AGG | - | chr2_3:11179002-11179021 | None:intergenic | 45.0% | |
| TCGATAAGATGGAGGATGCT+AGG | + | chr2_3:11179055-11179074 | Msa0278220:CDS | 45.0% | |
| GGATGCTAGGTGTGAAATTC+AGG | + | chr2_3:11179068-11179087 | Msa0278220:CDS | 45.0% | |
| GAGATCTGCAGTGATAGAGT+CGG | - | chr2_3:11179205-11179224 | None:intergenic | 45.0% | |
| GCTTATCGACAACAATGGAG+TGG | - | chr2_3:11179528-11179547 | None:intergenic | 45.0% | |
| ACCTGATTCACAACTTCCCA+CGG | - | chr2_3:11179616-11179635 | None:intergenic | 45.0% | |
| !! | AATAGCAGTATGAAGCACCG+CGG | - | chr2_3:11179752-11179771 | None:intergenic | 45.0% |
| ! | GCTGCAGTTCAAGTTCCAAT+AGG | + | chr2_3:11180042-11180061 | Msa0278220:CDS | 45.0% |
| !! | GGTGGATGATAAACTTGCTG+AGG | + | chr2_3:11180298-11180317 | Msa0278220:CDS | 45.0% |
| CTCAAGATCAGCTGCTGATA+TGG | - | chr2_3:11180342-11180361 | None:intergenic | 45.0% | |
| CATATCAGCAGCTGATCTTG+AGG | + | chr2_3:11180340-11180359 | Msa0278220:CDS | 45.0% | |
| TTCGTAGAGCCACTATAGCA+CGG | + | chr2_3:11180609-11180628 | Msa0278220:CDS | 45.0% | |
| AATTAAGAGTCTGCAGGAGG+GGG | - | chr2_3:11180686-11180705 | None:intergenic | 45.0% | |
| GTCTTCCAGAGACTTCACTT+TGG | + | chr2_3:11180750-11180769 | Msa0278220:intron | 45.0% | |
| ! | TTAGGAGACAAAGCACCAAG+AGG | + | chr2_3:11181124-11181143 | Msa0278220:CDS | 45.0% |
| CACCAAGAGGTTTGCAATTC+TGG | + | chr2_3:11181137-11181156 | Msa0278220:intron | 45.0% | |
| CTCCAGAATTGCAAACCTCT+TGG | - | chr2_3:11181142-11181161 | None:intergenic | 45.0% | |
| CTGGAGCATGTCATTAGTGT+TGG | + | chr2_3:11181156-11181175 | Msa0278220:intron | 45.0% | |
| TGACATGCATGCACACACAT+AGG | + | chr2_3:11181371-11181390 | Msa0278220:intron | 45.0% | |
| !! | AGCGCTTCTGCTATTTCGAA+TGG | + | chr2_3:11181528-11181547 | Msa0278220:intron | 45.0% |
| GAAATAGCGGCTAAAAGTGG+AGG | - | chr2_3:11181598-11181617 | None:intergenic | 45.0% | |
| GCAGAAATAGCGGCTAAAAG+TGG | - | chr2_3:11181601-11181620 | None:intergenic | 45.0% | |
| CAGCTATGGCCAATTTGTGA+AGG | - | chr2_3:11181648-11181667 | None:intergenic | 45.0% | |
| TTCTTCACTGCAATCTGCCA+TGG | + | chr2_3:11181678-11181697 | Msa0278220:intron | 45.0% | |
| ! | GTACAGGGGTACAACTACTT+TGG | + | chr2_3:11181774-11181793 | Msa0278220:intron | 45.0% |
| ! | AGGGGTACAACTACTTTGGA+TGG | + | chr2_3:11181778-11181797 | Msa0278220:intron | 45.0% |
| GATTCACTAGTATGGTGAGG+GGG | - | chr2_3:11182023-11182042 | None:intergenic | 45.0% | |
| CGATTCACTAGTATGGTGAG+GGG | - | chr2_3:11182024-11182043 | None:intergenic | 45.0% | |
| AGTGAATCGAACCTAGTACC+TGG | + | chr2_3:11182035-11182054 | Msa0278220:intron | 45.0% | |
| GTGAATCGAACCTAGTACCT+GGG | + | chr2_3:11182036-11182055 | Msa0278220:intron | 45.0% | |
| TGAATCGAACCTAGTACCTG+GGG | + | chr2_3:11182037-11182056 | Msa0278220:intron | 45.0% | |
| AGTACTTATCCCCAGGTACT+AGG | - | chr2_3:11182129-11182148 | None:intergenic | 45.0% | |
| GCTAGTAGCTCAATTGGTAG+TGG | + | chr2_3:11182092-11182111 | Msa0278220:intron | 45.0% | |
| AGTACTTATCCCCAGGTACT+AGG | + | chr2_3:11182129-11182148 | Msa0278220:intron | 45.0% | |
| TTGTGAGTAACAGTGCAGTG+CGG | + | chr2_3:11182194-11182213 | Msa0278220:intron | 45.0% | |
| GTTACACCTTGTCCTATGAC+TGG | - | chr2_3:11182360-11182379 | None:intergenic | 45.0% | |
| GTCATAGGACAAGGTGTAAC+TGG | + | chr2_3:11182360-11182379 | Msa0278220:intron | 45.0% | |
| ! | AAGTGACGGAGGTGGAAAGA+TGG | - | chr2_3:11178817-11178836 | None:intergenic | 50.0% |
| GTAGTAACCCAGATGTTGCG+CGG | - | chr2_3:11178853-11178872 | None:intergenic | 50.0% | |
| CGCAACATCTGGGTTACTAC+AGG | + | chr2_3:11178853-11178872 | Msa0278220:CDS | 50.0% | |
| CACGGGTGAGATCGATAAGA+TGG | + | chr2_3:11179044-11179063 | Msa0278220:CDS | 50.0% | |
| GGGTGAGATCGATAAGATGG+AGG | + | chr2_3:11179047-11179066 | Msa0278220:CDS | 50.0% | |
| ! | TCATGGCGGAAGCTAGGTTT+GGG | + | chr2_3:11179129-11179148 | Msa0278220:CDS | 50.0% |
| CGGAAGCTAGGTTTGGGAAA+AGG | + | chr2_3:11179135-11179154 | Msa0278220:CDS | 50.0% | |
| TTAGCCGCACAGTTCTCAAC+TGG | + | chr2_3:11179163-11179182 | Msa0278220:CDS | 50.0% | |
| TAGCCGCACAGTTCTCAACT+GGG | + | chr2_3:11179164-11179183 | Msa0278220:CDS | 50.0% | |
| ACACCCAGTTGAGAACTGTG+CGG | - | chr2_3:11179170-11179189 | None:intergenic | 50.0% | |
| GCAGTGATAGAGTCGGACTT+GGG | - | chr2_3:11179198-11179217 | None:intergenic | 50.0% | |
| TGCAGTGATAGAGTCGGACT+TGG | - | chr2_3:11179199-11179218 | None:intergenic | 50.0% | |
| ! | CGCAGAGCATTCTTAACCTC+AGG | - | chr2_3:11179454-11179473 | None:intergenic | 50.0% |
| ! | GATTTGCTCCCTTGTGGTCA+AGG | - | chr2_3:11179594-11179613 | None:intergenic | 50.0% |
| TCCGTGGGAAGTTGTGAATC+AGG | + | chr2_3:11179612-11179631 | Msa0278220:CDS | 50.0% | |
| TCCTGCAGATATGGAAGCCT+TGG | + | chr2_3:11180235-11180254 | Msa0278220:CDS | 50.0% | |
| ACCAAGGCTTCCATATCTGC+AGG | - | chr2_3:11180239-11180258 | None:intergenic | 50.0% | |
| ! | CTTGCTGAGGCTTTTTGCAG+TGG | + | chr2_3:11180311-11180330 | Msa0278220:CDS | 50.0% |
| AGCTGATCTTGAGGTGTGTG+TGG | + | chr2_3:11180349-11180368 | Msa0278220:intron | 50.0% | |
| GCTGATCTTGAGGTGTGTGT+GGG | + | chr2_3:11180350-11180369 | Msa0278220:intron | 50.0% | |
| AAGATTTGGAGATGGGGGGT+GGG | - | chr2_3:11180540-11180559 | None:intergenic | 50.0% | |
| TAAGATTTGGAGATGGGGGG+TGG | - | chr2_3:11180541-11180560 | None:intergenic | 50.0% | |
| ATTAAGAGTCTGCAGGAGGG+GGG | - | chr2_3:11180685-11180704 | None:intergenic | 50.0% | |
| TGCCGCCATCCTTCACAAAT+TGG | + | chr2_3:11181636-11181655 | Msa0278220:intron | 50.0% | |
| GGCCAATTTGTGAAGGATGG+CGG | - | chr2_3:11181641-11181660 | None:intergenic | 50.0% | |
| TGTTAGCTGTAACAGCCCGT+GGG | + | chr2_3:11181940-11181959 | Msa0278220:intron | 50.0% | |
| GTGAGTAACAGTGCAGTGCT+GGG | - | chr2_3:11181985-11182004 | None:intergenic | 50.0% | |
| TGTGAGTAACAGTGCAGTGC+TGG | - | chr2_3:11182195-11182214 | None:intergenic | 50.0% | |
| AAAGGTGGTGTGCTGAACTG+TGG | - | chr2_3:11182264-11182283 | None:intergenic | 50.0% | |
| AACTGGCAGTAGCCAGTCAT+AGG | + | chr2_3:11182345-11182364 | Msa0278220:intron | 50.0% | |
| CAGTAGCCAGTCATAGGACA+AGG | + | chr2_3:11182351-11182370 | Msa0278220:intron | 50.0% | |
| CTCACCGGTGATTGTAGTTC+CGG | + | chr2_3:11182580-11182599 | Msa0278220:CDS | 50.0% | |
| !! | TAGAGGAGGCGCTGCATTGA+AGG | - | chr2_3:11178772-11178791 | None:intergenic | 55.0% |
| TGGAGGAGGAGTAGTAGAGG+AGG | - | chr2_3:11178786-11178805 | None:intergenic | 55.0% | |
| GAGGTGGAAAGATGGAGTGG+CGG | - | chr2_3:11178809-11178828 | None:intergenic | 55.0% | |
| ACGGAGGTGGAAAGATGGAG+TGG | - | chr2_3:11178812-11178831 | None:intergenic | 55.0% | |
| CCACCTCCGTCACTTCTCAA+CGG | + | chr2_3:11178822-11178841 | Msa0278220:CDS | 55.0% | |
| GCTGCTCCGTTGAGAAGTGA+CGG | - | chr2_3:11178831-11178850 | None:intergenic | 55.0% | |
| TACCTTCTCTGTCGGGTCGA+TGG | - | chr2_3:11178881-11178900 | None:intergenic | 55.0% | |
| GCTACGCAACGTCTGGATCT+CGG | + | chr2_3:11178972-11178991 | Msa0278220:CDS | 55.0% | |
| CTACGCAACGTCTGGATCTC+GGG | + | chr2_3:11178973-11178992 | Msa0278220:CDS | 55.0% | |
| ! | CAAGAGTCATGGCGGAAGCT+AGG | + | chr2_3:11179123-11179142 | Msa0278220:CDS | 55.0% |
| ! | GTCATGGCGGAAGCTAGGTT+TGG | + | chr2_3:11179128-11179147 | Msa0278220:CDS | 55.0% |
| AATGCTCTGCGTGCCTTCGA+CGG | + | chr2_3:11179463-11179482 | Msa0278220:CDS | 55.0% | |
| AACAAGTACGGCACCGTCGA+AGG | - | chr2_3:11179479-11179498 | None:intergenic | 55.0% | |
| ACCACAAGGGAGCAAATCCG+TGG | + | chr2_3:11179596-11179615 | Msa0278220:CDS | 55.0% | |
| CCACAAGGGAGCAAATCCGT+GGG | + | chr2_3:11179597-11179616 | Msa0278220:CDS | 55.0% | |
| TGTGTCGTGCATTGCAACCG+CGG | + | chr2_3:11179732-11179751 | Msa0278220:intron | 55.0% | |
| AGATTTGGAGATGGGGGGTG+GGG | - | chr2_3:11180539-11180558 | None:intergenic | 55.0% | |
| ! | GGCGGCACAATGGCGTTTTA+TGG | - | chr2_3:11181623-11181642 | None:intergenic | 55.0% |
| ! | TGTGAAGGATGGCGGCACAA+TGG | - | chr2_3:11181633-11181652 | None:intergenic | 55.0% |
| CTGTTAGCTGTAACAGCCCG+TGG | + | chr2_3:11181939-11181958 | Msa0278220:intron | 55.0% | |
| CCGTTCGAACCTAGTACCTG+GGG | - | chr2_3:11182141-11182160 | None:intergenic | 55.0% | |
| CCCCAGGTACTAGGTTCGAA+CGG | + | chr2_3:11182138-11182157 | Msa0278220:intron | 55.0% | |
| CCCGTTCGAACCTAGTACCT+GGG | - | chr2_3:11182142-11182161 | None:intergenic | 55.0% | |
| CCCAGGTACTAGGTTCGAAC+GGG | + | chr2_3:11182139-11182158 | Msa0278220:intron | 55.0% | |
| TCCCGTTCGAACCTAGTACC+TGG | - | chr2_3:11182143-11182162 | None:intergenic | 55.0% | |
| AGGTACTAGGTTCGAACGGG+AGG | + | chr2_3:11182142-11182161 | Msa0278220:intron | 55.0% | |
| TGAGTAACAGTGCAGTGCGG+TGG | + | chr2_3:11182197-11182216 | Msa0278220:intron | 55.0% | |
| GAGTAACAGTGCAGTGCGGT+GGG | + | chr2_3:11182198-11182217 | Msa0278220:intron | 55.0% | |
| CTGTGGCTAGTGTAACAGCC+CGG | - | chr2_3:11182247-11182266 | None:intergenic | 55.0% | |
| ! | ACTGACTCACACCACTGCCA+AGG | + | chr2_3:11182319-11182338 | Msa0278220:intron | 55.0% |
| CACCACTGCCAAGGTGTAAC+TGG | + | chr2_3:11182328-11182347 | Msa0278220:intron | 55.0% | |
| TGCCAGTTACACCTTGGCAG+TGG | - | chr2_3:11182333-11182352 | None:intergenic | 55.0% | |
| GGCTACTGCCAGTTACACCT+TGG | - | chr2_3:11182339-11182358 | None:intergenic | 55.0% | |
| AACTGGCAGTAGCCAGTCCT+AGG | + | chr2_3:11182377-11182396 | Msa0278220:intron | 55.0% | |
| CGGAACTACAATCACCGGTG+AGG | - | chr2_3:11182582-11182601 | None:intergenic | 55.0% | |
| GTCGCCGGAACTACAATCAC+CGG | - | chr2_3:11182587-11182606 | None:intergenic | 55.0% | |
| CGGTGGAGGAGGAGTAGTAG+AGG | - | chr2_3:11178789-11178808 | None:intergenic | 60.0% | |
| GAAAGATGGAGTGGCGGTGG+AGG | - | chr2_3:11178803-11178822 | None:intergenic | 60.0% | |
| GTGGAAAGATGGAGTGGCGG+TGG | - | chr2_3:11178806-11178825 | None:intergenic | 60.0% | |
| ! | CCGTTGAGAAGTGACGGAGG+TGG | - | chr2_3:11178825-11178844 | None:intergenic | 60.0% |
| GCTCCGTTGAGAAGTGACGG+AGG | - | chr2_3:11178828-11178847 | None:intergenic | 60.0% | |
| GTCCATCGACCCGACAGAGA+AGG | + | chr2_3:11178876-11178895 | Msa0278220:CDS | 60.0% | |
| TGAGAGGCGGTGGAAAGTGG+CGG | - | chr2_3:11178944-11178963 | None:intergenic | 60.0% | |
| AGGTGAGAGGCGGTGGAAAG+TGG | - | chr2_3:11178947-11178966 | None:intergenic | 60.0% | |
| ! | CCCACGGATTTGCTCCCTTG+TGG | - | chr2_3:11179600-11179619 | None:intergenic | 60.0% |
| GATTTGGAGATGGGGGGTGG+GGG | - | chr2_3:11180538-11180557 | None:intergenic | 60.0% | |
| GGCTAGTGTAACAGCCCGGT+GGG | - | chr2_3:11182243-11182262 | None:intergenic | 60.0% | |
| TGGCTAGTGTAACAGCCCGG+TGG | - | chr2_3:11182244-11182263 | None:intergenic | 60.0% | |
| GGTGAGGCAATCGCAGTGGT+CGG | - | chr2_3:11182566-11182585 | None:intergenic | 60.0% | |
| GACCACTGCGATTGCCTCAC+CGG | + | chr2_3:11182565-11182584 | Msa0278220:CDS | 60.0% | |
| GGAGCAGCTGTAACTGTCGC+CGG | - | chr2_3:11182602-11182621 | None:intergenic | 60.0% | |
| GGCGACAGTTACAGCTGCTC+CGG | + | chr2_3:11182601-11182620 | Msa0278220:CDS | 60.0% | |
| AGCTGCTCCGGCGACAGTTA+CGG | + | chr2_3:11182613-11182632 | Msa0278220:CDS | 60.0% | |
| !! | GAGGCGCTGCATTGAAGGCC+TGG | - | chr2_3:11178767-11178786 | None:intergenic | 65.0% |
| AGATGGAGTGGCGGTGGAGG+AGG | - | chr2_3:11178800-11178819 | None:intergenic | 65.0% | |
| GGAGCAGCCGCGCAACATCT+GGG | + | chr2_3:11178843-11178862 | Msa0278220:CDS | 65.0% | |
| TCCACCGCCTCTCACCTGAG+CGG | + | chr2_3:11178950-11178969 | Msa0278220:CDS | 65.0% | |
| GTAGCCGCTCAGGTGAGAGG+CGG | - | chr2_3:11178957-11178976 | None:intergenic | 65.0% | |
| TGCGTAGCCGCTCAGGTGAG+AGG | - | chr2_3:11178960-11178979 | None:intergenic | 65.0% | |
| CAGACGTTGCGTAGCCGCTC+AGG | - | chr2_3:11178967-11178986 | None:intergenic | 65.0% | |
| CTGAGCGGCTACGCAACGTC+TGG | + | chr2_3:11178965-11178984 | Msa0278220:CDS | 65.0% | |
| GGTGGGGGAGAAGTGACAGC+TGG | - | chr2_3:11180523-11180542 | None:intergenic | 65.0% | |
| AGAGTCTGCAGGAGGGGGGT+AGG | - | chr2_3:11180681-11180700 | None:intergenic | 65.0% | |
| TGGGTGCAGTGCCTTGCGAG+GGG | - | chr2_3:11182217-11182236 | None:intergenic | 65.0% | |
| CTGGGTGCAGTGCCTTGCGA+GGG | - | chr2_3:11181967-11181986 | None:intergenic | 65.0% | |
| GTGGGTGCAGTGCCTTGCGA+GGG | + | chr2_3:11182216-11182235 | Msa0278220:intron | 65.0% | |
| CACCGGTGAGGCAATCGCAG+TGG | - | chr2_3:11182570-11182589 | None:intergenic | 65.0% | |
| GGAGCAGCCGTAACTGTCGC+CGG | - | chr2_3:11182623-11182642 | None:intergenic | 65.0% | |
| GGCGACAGTTACGGCTGCTC+CGG | + | chr2_3:11182622-11182641 | Msa0278220:CDS | 65.0% | |
| CGGAGCAGCCGCGCAACATC+TGG | + | chr2_3:11178842-11178861 | Msa0278220:CDS | 70.0% | |
| GAGGCGGTGGAAAGTGGCGG+TGG | - | chr2_3:11178941-11178960 | None:intergenic | 70.0% | |
| AGTGCCTTGCGAGGGGCCCA+CGG | - | chr2_3:11181959-11181978 | None:intergenic | 70.0% | |
| GCTGGGTGCAGTGCCTTGCG+AGG | - | chr2_3:11181968-11181987 | None:intergenic | 70.0% | |
| GGTGGGTGCAGTGCCTTGCG+AGG | + | chr2_3:11182215-11182234 | Msa0278220:intron | 70.0% | |
| GTGCCTTGCGAGGGACCCAC+CGG | + | chr2_3:11182225-11182244 | Msa0278220:intron | 70.0% | |
| TGCCTTGCGAGGGACCCACC+GGG | + | chr2_3:11182226-11182245 | Msa0278220:intron | 70.0% | |
| GCCGCTCAGGTGAGAGGCGG+TGG | - | chr2_3:11178954-11178973 | None:intergenic | 75.0% | |
| GTGCCTTGCGAGGGGCCCAC+GGG | - | chr2_3:11181958-11181977 | None:intergenic | 75.0% | |
| AGCCCGGTGGGTCCCTCGCA+AGG | - | chr2_3:11182231-11182250 | None:intergenic | 75.0% | |
| ! | CAGCCCGTGGGCCCCTCGCA+AGG | + | chr2_3:11181952-11181971 | Msa0278220:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 11178745 | 11182667 | 11178745 | ID=Msa0278220;Name=Msa0278220 |
| chr2_3 | mRNA | 11178745 | 11182667 | 11178745 | ID=Msa0278220-mRNA-1;Parent=Msa0278220;Name=Msa0278220-mRNA-1;_AED=0.51;_eAED=0.51;_QI=0|0.42|0.5|0.75|1|1|8|0|426 |
| chr2_3 | exon | 11178745 | 11179185 | 11178745 | ID=Msa0278220-mRNA-1:exon:5030;Parent=Msa0278220-mRNA-1 |
| chr2_3 | exon | 11179412 | 11179633 | 11179412 | ID=Msa0278220-mRNA-1:exon:5031;Parent=Msa0278220-mRNA-1 |
| chr2_3 | exon | 11180015 | 11180136 | 11180015 | ID=Msa0278220-mRNA-1:exon:5032;Parent=Msa0278220-mRNA-1 |
| chr2_3 | exon | 11180211 | 11180361 | 11180211 | ID=Msa0278220-mRNA-1:exon:5033;Parent=Msa0278220-mRNA-1 |
| chr2_3 | exon | 11180602 | 11180673 | 11180602 | ID=Msa0278220-mRNA-1:exon:5034;Parent=Msa0278220-mRNA-1 |
| chr2_3 | exon | 11181072 | 11181145 | 11181072 | ID=Msa0278220-mRNA-1:exon:5035;Parent=Msa0278220-mRNA-1 |
| chr2_3 | exon | 11181780 | 11181856 | 11181780 | ID=Msa0278220-mRNA-1:exon:5036;Parent=Msa0278220-mRNA-1 |
| chr2_3 | exon | 11182546 | 11182667 | 11182546 | ID=Msa0278220-mRNA-1:exon:5037;Parent=Msa0278220-mRNA-1 |
| chr2_3 | CDS | 11178745 | 11179185 | 11178745 | ID=Msa0278220-mRNA-1:cds;Parent=Msa0278220-mRNA-1 |
| chr2_3 | CDS | 11179412 | 11179633 | 11179412 | ID=Msa0278220-mRNA-1:cds;Parent=Msa0278220-mRNA-1 |
| chr2_3 | CDS | 11180015 | 11180136 | 11180015 | ID=Msa0278220-mRNA-1:cds;Parent=Msa0278220-mRNA-1 |
| chr2_3 | CDS | 11180211 | 11180361 | 11180211 | ID=Msa0278220-mRNA-1:cds;Parent=Msa0278220-mRNA-1 |
| chr2_3 | CDS | 11180602 | 11180673 | 11180602 | ID=Msa0278220-mRNA-1:cds;Parent=Msa0278220-mRNA-1 |
| chr2_3 | CDS | 11181072 | 11181145 | 11181072 | ID=Msa0278220-mRNA-1:cds;Parent=Msa0278220-mRNA-1 |
| chr2_3 | CDS | 11181780 | 11181856 | 11181780 | ID=Msa0278220-mRNA-1:cds;Parent=Msa0278220-mRNA-1 |
| chr2_3 | CDS | 11182546 | 11182667 | 11182546 | ID=Msa0278220-mRNA-1:cds;Parent=Msa0278220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
