Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198050 | AES64662.2 | 83.046 | 348 | 22 | 2 | 1 | 311 | 56 | 403 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198050 | sp|F4IW10|EFGM2_ARATH | 55.000 | 300 | 114 | 3 | 18 | 300 | 61 | 356 | 8.37e-103 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198050 | G7IFR1 | 83.046 | 348 | 22 | 2 | 1 | 311 | 56 | 403 | 0.0 | 578 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036870 | Msa0198050 | 0.814524 | 1.474738e-51 | -8.615850e-47 |
| Msa0052260 | Msa0198050 | 0.809580 | 1.763649e-50 | -8.615850e-47 |
| Msa0178560 | Msa0198050 | 0.805343 | 1.397172e-49 | -8.615850e-47 |
| Msa0198050 | Msa0240350 | 0.865795 | 4.555250e-65 | -8.615850e-47 |
| Msa0198050 | Msa0278220 | 0.842778 | 2.100705e-58 | -8.615850e-47 |
| Msa0198050 | Msa0308720 | 0.912501 | 1.812659e-83 | -8.615850e-47 |
| Msa0198050 | Msa0317680 | 0.838830 | 2.277536e-57 | -8.615850e-47 |
| Msa0198050 | Msa1090140 | 0.802840 | 4.635746e-49 | -8.615850e-47 |
| Msa0198050 | Msa1372230 | 0.804757 | 1.853619e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198050 | MtrunA17_Chr2g0291321 | 76.524 | 328 | 21 | 2 | 1 | 272 | 56 | 383 | 5.33e-176 | 493 |
| Msa0198050 | MtrunA17_Chr2g0291331 | 68.182 | 330 | 65 | 4 | 10 | 299 | 12 | 341 | 6.60e-150 | 430 |
| Msa0198050 | MtrunA17_Chr2g0291381 | 65.972 | 288 | 63 | 2 | 20 | 272 | 6 | 293 | 7.61e-130 | 371 |
| Msa0198050 | MtrunA17_Chr2g0291831 | 62.541 | 307 | 86 | 9 | 18 | 299 | 65 | 367 | 6.61e-120 | 353 |
| Msa0198050 | MtrunA17_Chr2g0291361 | 57.097 | 310 | 76 | 3 | 20 | 272 | 6 | 315 | 1.11e-112 | 329 |
| Msa0198050 | MtrunA17_Chr2g0291391 | 58.278 | 302 | 69 | 3 | 4 | 248 | 16 | 317 | 2.89e-112 | 328 |
| Msa0198050 | MtrunA17_Chr7g0231931 | 59.000 | 300 | 102 | 3 | 18 | 300 | 58 | 353 | 1.63e-110 | 337 |
| Msa0198050 | MtrunA17_Chr2g0286711 | 58.140 | 301 | 104 | 4 | 18 | 300 | 51 | 347 | 3.86e-103 | 317 |
| Msa0198050 | MtrunA17_Chr2g0291811 | 58.940 | 302 | 96 | 9 | 18 | 299 | 28 | 321 | 1.57e-97 | 295 |
| Msa0198050 | MtrunA17_Chr2g0310991 | 71.658 | 187 | 42 | 3 | 130 | 305 | 1 | 187 | 1.12e-89 | 265 |
| Msa0198050 | MtrunA17_Chr2g0291351 | 68.817 | 186 | 55 | 2 | 84 | 267 | 5 | 189 | 1.85e-81 | 245 |
| Msa0198050 | MtrunA17_Chr4g0025761 | 39.937 | 318 | 158 | 6 | 14 | 300 | 42 | 357 | 7.21e-64 | 207 |
| Msa0198050 | MtrunA17_Chr3g0082331 | 38.580 | 324 | 156 | 10 | 14 | 300 | 42 | 359 | 1.13e-61 | 203 |
| Msa0198050 | MtrunA17_Chr2g0311061 | 73.387 | 124 | 28 | 1 | 130 | 248 | 1 | 124 | 1.38e-59 | 186 |
| Msa0198050 | MtrunA17_Chr6g0459191 | 44.041 | 193 | 85 | 4 | 130 | 300 | 1 | 192 | 6.50e-49 | 166 |
| Msa0198050 | MtrunA17_Chr2g0291421 | 48.538 | 171 | 60 | 1 | 20 | 162 | 47 | 217 | 1.04e-48 | 162 |
| Msa0198050 | MtrunA17_Chr2g0310931 | 65.546 | 119 | 41 | 0 | 130 | 248 | 1 | 119 | 1.08e-48 | 158 |
| Msa0198050 | MtrunA17_Chr4g0056591 | 36.462 | 277 | 160 | 4 | 23 | 288 | 93 | 364 | 9.55e-48 | 171 |
| Msa0198050 | MtrunA17_Chr8g0391041 | 40.670 | 209 | 80 | 6 | 130 | 300 | 1 | 203 | 5.03e-38 | 137 |
| Msa0198050 | MtrunA17_Chr2g0310881 | 70.000 | 90 | 21 | 1 | 158 | 241 | 43 | 132 | 9.31e-35 | 124 |
| Msa0198050 | MtrunA17_Chr2g0291301 | 37.198 | 207 | 70 | 5 | 18 | 164 | 26 | 232 | 1.36e-30 | 115 |
| Msa0198050 | MtrunA17_Chr8g0391571 | 55.102 | 98 | 37 | 2 | 210 | 300 | 1 | 98 | 9.41e-26 | 101 |
| Msa0198050 | MtrunA17_Chr8g0391581 | 35.106 | 188 | 110 | 6 | 14 | 193 | 37 | 220 | 3.64e-24 | 98.6 |
| Msa0198050 | MtrunA17_Chr7g0215051 | 75.000 | 40 | 10 | 0 | 118 | 157 | 35 | 74 | 9.74e-15 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198050 | AT2G45030.1 | 55.000 | 300 | 114 | 3 | 18 | 300 | 61 | 356 | 8.51e-104 | 320 |
| Msa0198050 | AT1G45332.1 | 54.667 | 300 | 115 | 3 | 18 | 300 | 61 | 356 | 3.30e-103 | 318 |
| Msa0198050 | AT1G45332.2 | 63.636 | 176 | 59 | 1 | 130 | 300 | 1 | 176 | 3.04e-73 | 236 |
| Msa0198050 | AT1G62750.1 | 36.691 | 278 | 162 | 4 | 23 | 290 | 97 | 370 | 1.41e-48 | 173 |
Find 73 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATTGTTTCTTTGAATT+TGG | 0.132068 | 2_1:+16594984 | None:intergenic |
| TGTTGATCTCGTGCAATTAA+AGG | 0.175815 | 2_1:-16596757 | Msa0198050:CDS |
| CTCAAGATCAGCTGCTGATA+TGG | 0.203048 | 2_1:+16596507 | None:intergenic |
| GGATGCTAGGTGTGAAATTC+AGG | 0.291625 | 2_1:-16597778 | Msa0198050:CDS |
| ACAGGGGTTACAACTACTTT+TGG | 0.293780 | 2_1:-16595072 | Msa0198050:intron |
| TGTTTCTTATTGCAGAATAA+TGG | 0.305165 | 2_1:-16596650 | Msa0198050:intron |
| AAATTATATTCCAAGCCTAT+TGG | 0.308761 | 2_1:+16596789 | None:intergenic |
| CTTGTTCTTAATAGTGTTGA+TGG | 0.313861 | 2_1:-16597353 | Msa0198050:CDS |
| GGGTAGTGCTTTCAAATATA+AGG | 0.342582 | 2_1:-16596194 | Msa0198050:intron |
| GAAATTTATACCATTATTCA+TGG | 0.365364 | 2_1:-16596215 | Msa0198050:CDS |
| TGAAGAACTTCCTGCAGATA+TGG | 0.380602 | 2_1:-16596620 | Msa0198050:CDS |
| GGTGGTGGACGAACTCTTAT+CGG | 0.403400 | 2_1:+16597923 | None:intergenic |
| GTTTCAGAAACAGACCCATT+TGG | 0.405371 | 2_1:+16596717 | None:intergenic |
| GTCATGGCGGAAGCTAGGTT+TGG | 0.409043 | 2_1:-16597718 | Msa0198050:CDS |
| AAAGCACTACCCATGAATAA+TGG | 0.418480 | 2_1:+16596205 | None:intergenic |
| TCAAGATCAGCTGCTGATAT+GGG | 0.426594 | 2_1:+16596508 | None:intergenic |
| GCTGCAGTTCAAGTTCCAAT+AGG | 0.431611 | 2_1:-16596804 | Msa0198050:CDS |
| TCCGTGGGAAGTTGTGAATC+AGG | 0.435444 | 2_1:-16597234 | Msa0198050:intron |
| TATAAATTTCCGTGCTATAG+TGG | 0.454451 | 2_1:+16596228 | None:intergenic |
| TCCTGCAGATATGGAAGCCT+TGG | 0.458062 | 2_1:-16596611 | Msa0198050:CDS |
| CTACGCAACGTCTGGATCTC+GGG | 0.466125 | 2_1:-16597873 | Msa0198050:CDS |
| CTGAGCGGCTACGCAACGTC+TGG | 0.470128 | 2_1:-16597881 | Msa0198050:CDS |
| GGAGTGAAATGAACATGATC+AGG | 0.475230 | 2_1:+16597416 | None:intergenic |
| TCATGGCGGAAGCTAGGTTT+GGG | 0.476054 | 2_1:-16597717 | Msa0198050:CDS |
| GATTTGCTCCCTTGTGGTCA+AGG | 0.476144 | 2_1:+16597255 | None:intergenic |
| GCTACGCAACGTCTGGATCT+CGG | 0.476690 | 2_1:-16597874 | Msa0198050:CDS |
| CGCAGAGCATTCTTAACCTC+AGG | 0.479868 | 2_1:+16597395 | None:intergenic |
| CGGAAGCTAGGTTTGGGAAA+AGG | 0.481248 | 2_1:-16597711 | Msa0198050:CDS |
| CAGACGTTGCGTAGCCGCTC+AGG | 0.485503 | 2_1:+16597882 | None:intergenic |
| CAAGAGTCATGGCGGAAGCT+AGG | 0.489152 | 2_1:-16597723 | Msa0198050:CDS |
| TTAGAATTAATAGCTTCAGT+TGG | 0.491602 | 2_1:+16595023 | None:intergenic |
| CATTGTTGTCGATAAGCAAA+TGG | 0.494110 | 2_1:-16597315 | Msa0198050:CDS |
| TCTCTCGGTTAAAAGAAGCT+TGG | 0.499909 | 2_1:+16597836 | None:intergenic |
| ATTTGGACCATGAAAATAGT+AGG | 0.506476 | 2_1:+16596734 | None:intergenic |
| AATGCTCTGCGTGCCTTCGA+CGG | 0.507197 | 2_1:-16597383 | Msa0198050:CDS |
| TAATTCTAAGAATGAGGAAA+AGG | 0.510443 | 2_1:-16595009 | Msa0198050:CDS |
| TTGTTAATGAATACAAGTCT+TGG | 0.518605 | 2_1:+16597278 | None:intergenic |
| CACGGGTGAGATCGATAAGA+TGG | 0.520551 | 2_1:-16597802 | Msa0198050:CDS |
| ACCAAGGCTTCCATATCTGC+AGG | 0.524207 | 2_1:+16596610 | None:intergenic |
| GAGGCGGTCGAAAGTGGTGG+TGG | 0.528311 | 2_1:+16597908 | None:intergenic |
| TCGGTTAAAAGAAGCTTGGA+AGG | 0.529967 | 2_1:+16597840 | None:intergenic |
| CCCACGGATTTGCTCCCTTG+TGG | 0.530564 | 2_1:+16597249 | None:intergenic |
| AACAAGTACGGCACCGTCGA+AGG | 0.531702 | 2_1:+16597370 | None:intergenic |
| AACACTATTAAGAACAAGTA+CGG | 0.531837 | 2_1:+16597358 | None:intergenic |
| AGGTGAGAGGCGGTCGAAAG+TGG | 0.537806 | 2_1:+16597902 | None:intergenic |
| ACCTGATTCACAACTTCCCA+CGG | 0.544036 | 2_1:+16597233 | None:intergenic |
| AGTTCAAGTTCCAATAGGCT+TGG | 0.548353 | 2_1:-16596799 | Msa0198050:CDS |
| AGCTATTAATTCTAAGAATG+AGG | 0.548422 | 2_1:-16595015 | Msa0198050:CDS |
| TCGATAAGATGGAGGATGCT+AGG | 0.551120 | 2_1:-16597791 | Msa0198050:CDS |
| TGCGTAGCCGCTCAGGTGAG+AGG | 0.553102 | 2_1:+16597889 | None:intergenic |
| CATTAACAACCTTGACCACA+AGG | 0.565447 | 2_1:-16597264 | Msa0198050:CDS |
| TCATGTTCATTTCACTCCTG+AGG | 0.568875 | 2_1:-16597411 | Msa0198050:CDS |
| CATATCAGCAGCTGATCTTG+AGG | 0.573243 | 2_1:-16596506 | Msa0198050:intron |
| AAATTTATACCATTATTCAT+GGG | 0.573819 | 2_1:-16596214 | Msa0198050:CDS |
| CGTGTATAACAGTCTTCTCT+CGG | 0.584139 | 2_1:+16597821 | None:intergenic |
| ACCACAAGGGAGCAAATCCG+TGG | 0.595291 | 2_1:-16597250 | Msa0198050:CDS |
| CTTATATTAAACAAGAGTCA+TGG | 0.604314 | 2_1:-16597734 | Msa0198050:CDS |
| CGAGAGAAGACTGTTATACA+CGG | 0.608733 | 2_1:-16597820 | Msa0198050:CDS |
| TGAGAGGCGGTCGAAAGTGG+TGG | 0.612716 | 2_1:+16597905 | None:intergenic |
| CATTTGCTTATCGACAACAA+TGG | 0.617902 | 2_1:+16597316 | None:intergenic |
| AAAGAAGCTTGGAAGGGTCA+AGG | 0.621335 | 2_1:+16597847 | None:intergenic |
| GGTGGATGATAAACTTGCTG+AGG | 0.628077 | 2_1:-16596548 | Msa0198050:CDS |
| CGGTTAAAAGAAGCTTGGAA+GGG | 0.631366 | 2_1:+16597841 | None:intergenic |
| TTCGTAGAGCCACTATAGCA+CGG | 0.634903 | 2_1:-16596237 | Msa0198050:CDS |
| GCTTATCGACAACAATGGAG+TGG | 0.648034 | 2_1:+16597321 | None:intergenic |
| TTAATAGCTTCAGTTGGACA+CGG | 0.663270 | 2_1:+16595029 | None:intergenic |
| GGGTGAGATCGATAAGATGG+AGG | 0.685319 | 2_1:-16597799 | Msa0198050:CDS |
| ATTAACAACCTTGACCACAA+GGG | 0.687442 | 2_1:-16597263 | Msa0198050:CDS |
| CCACAAGGGAGCAAATCCGT+GGG | 0.687803 | 2_1:-16597249 | Msa0198050:CDS |
| GAGAGAAGACTGTTATACAC+GGG | 0.689434 | 2_1:-16597819 | Msa0198050:CDS |
| GTAGCCGCTCAGGTGAGAGG+CGG | 0.697015 | 2_1:+16597892 | None:intergenic |
| ATATTAAACAAGAGTCATGG+CGG | 0.763848 | 2_1:-16597731 | Msa0198050:CDS |
| TCGACCGCCTCTCACCTGAG+CGG | 0.804281 | 2_1:-16597896 | Msa0198050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAATTTGAGTATTAT+AGG | + | chr2_1:16596016-16596035 | None:intergenic | 10.0% |
| !! | ATTATTTACAAAATAAGATT+TGG | + | chr2_1:16596615-16596634 | None:intergenic | 10.0% |
| !! | AAATTTATACCATTATTCAT+GGG | - | chr2_1:16596693-16596712 | Msa0198050:intron | 15.0% |
| !!! | ATTATGATCTAATTTAGTTT+GGG | - | chr2_1:16596789-16596808 | Msa0198050:CDS | 15.0% |
| !! | TAAATAGATTTATATGACAA+TGG | + | chr2_1:16596953-16596972 | None:intergenic | 15.0% |
| !! | AGAATATTATGTCTTATATT+AGG | + | chr2_1:16597299-16597318 | None:intergenic | 15.0% |
| !!! | TTTTTTATTTTTGTTGTTTC+TGG | - | chr2_1:16597811-16597830 | Msa0198050:CDS | 15.0% |
| !! | CAATGATAATTAGATATTAC+AGG | + | chr2_1:16595958-16595977 | None:intergenic | 20.0% |
| !! | TATCTAATTATCATTGACAT+TGG | - | chr2_1:16595962-16595981 | Msa0198050:intron | 20.0% |
| !!! | ATCATTTTGTTACATTTTTC+AGG | - | chr2_1:16596054-16596073 | Msa0198050:intron | 20.0% |
| !!! | AGTTTTGCATACTAATTAAT+TGG | - | chr2_1:16596459-16596478 | Msa0198050:intron | 20.0% |
| !!! | ATTTTCTCATGTTTTTGTTT+TGG | - | chr2_1:16596499-16596518 | Msa0198050:intron | 20.0% |
| !!! | TTTGTTATTATTGAGTTTGT+AGG | - | chr2_1:16596641-16596660 | Msa0198050:intron | 20.0% |
| !! | GAAATTTATACCATTATTCA+TGG | - | chr2_1:16596692-16596711 | Msa0198050:intron | 20.0% |
| !! | GATTATGATCTAATTTAGTT+TGG | - | chr2_1:16596788-16596807 | Msa0198050:CDS | 20.0% |
| !! | ATCATACATAACTATTGTAA+GGG | + | chr2_1:16597087-16597106 | None:intergenic | 20.0% |
| !! | AATCATACATAACTATTGTA+AGG | + | chr2_1:16597088-16597107 | None:intergenic | 20.0% |
| !! | TTTATATTTCAAAAGACTGT+TGG | - | chr2_1:16597533-16597552 | Msa0198050:intron | 20.0% |
| !!! | TTCAATTGTTTCTTTGAATT+TGG | + | chr2_1:16597926-16597945 | None:intergenic | 20.0% |
| ! | CTTATATTAAACAAGAGTCA+TGG | - | chr2_1:16595173-16595192 | Msa0198050:intron | 25.0% |
| ! | ACAAAACTCAATAATGTTCT+TGG | - | chr2_1:16595397-16595416 | Msa0198050:intron | 25.0% |
| ! | AACACTATTAAGAACAAGTA+CGG | + | chr2_1:16595552-16595571 | None:intergenic | 25.0% |
| ! | TTGTTAATGAATACAAGTCT+TGG | + | chr2_1:16595632-16595651 | None:intergenic | 25.0% |
| ! | GGTAAACTTACTTAGATTAA+TGG | - | chr2_1:16595694-16595713 | Msa0198050:intron | 25.0% |
| !! | ACTTACTTAGATTAATGGAT+TGG | - | chr2_1:16595699-16595718 | Msa0198050:intron | 25.0% |
| !!! | TCATACTGCTATTTTTAACA+TGG | - | chr2_1:16595820-16595839 | Msa0198050:intron | 25.0% |
| !!! | CATACTGCTATTTTTAACAT+GGG | - | chr2_1:16595821-16595840 | Msa0198050:intron | 25.0% |
| ! | AAATTATATTCCAAGCCTAT+TGG | + | chr2_1:16596121-16596140 | None:intergenic | 25.0% |
| !! | AGGCTTGGAATATAATTTTA+AGG | - | chr2_1:16596123-16596142 | Msa0198050:intron | 25.0% |
| !! | GGCTTGGAATATAATTTTAA+GGG | - | chr2_1:16596124-16596143 | Msa0198050:intron | 25.0% |
| !!! | AACTTTTTCATTTGTTATGC+CGG | - | chr2_1:16596210-16596229 | Msa0198050:CDS | 25.0% |
| ! | TGTTTCTTATTGCAGAATAA+TGG | - | chr2_1:16596257-16596276 | Msa0198050:intron | 25.0% |
| ! | ACAAAATAAGATTTGGAGAT+GGG | + | chr2_1:16596608-16596627 | None:intergenic | 25.0% |
| ! | TACAAAATAAGATTTGGAGA+TGG | + | chr2_1:16596609-16596628 | None:intergenic | 25.0% |
| !! | AAAAATTTTGCATAGTGTGA+AGG | + | chr2_1:16596887-16596906 | None:intergenic | 25.0% |
| !! | TTCACACTATGCAAAATTTT+TGG | - | chr2_1:16596886-16596905 | Msa0198050:intron | 25.0% |
| ! | TTAGACTGTTGTTCTTAATA+GGG | + | chr2_1:16597243-16597262 | None:intergenic | 25.0% |
| ! | TTTAGACTGTTGTTCTTAAT+AGG | + | chr2_1:16597244-16597263 | None:intergenic | 25.0% |
| ! | AAACATTTGTTTAGACTTGA+AGG | - | chr2_1:16597261-16597280 | Msa0198050:CDS | 25.0% |
| ! | AACATTTGTTTAGACTTGAA+GGG | - | chr2_1:16597262-16597281 | Msa0198050:CDS | 25.0% |
| !! | AAATACAGAATCTTCAAGTT+TGG | + | chr2_1:16597480-16597499 | None:intergenic | 25.0% |
| ! | AAATCAATGTTGTCAAATAG+TGG | + | chr2_1:16597763-16597782 | None:intergenic | 25.0% |
| ! | TTAGAATTAATAGCTTCAGT+TGG | + | chr2_1:16597887-16597906 | None:intergenic | 25.0% |
| !! | AGCTATTAATTCTAAGAATG+AGG | - | chr2_1:16597892-16597911 | Msa0198050:CDS | 25.0% |
| !! | TAATTCTAAGAATGAGGAAA+AGG | - | chr2_1:16597898-16597917 | Msa0198050:CDS | 25.0% |
| ATATTAAACAAGAGTCATGG+CGG | - | chr2_1:16595176-16595195 | Msa0198050:intron | 30.0% | |
| GGTTTGCATTATTCATGAAA+TGG | - | chr2_1:16595418-16595437 | Msa0198050:intron | 30.0% | |
| ! | CTTGTTCTTAATAGTGTTGA+TGG | - | chr2_1:16595554-16595573 | Msa0198050:intron | 30.0% |
| !! | TAATGGATTGGATAGATTCT+AGG | - | chr2_1:16595711-16595730 | Msa0198050:intron | 30.0% |
| TTGTACTATGTTGTCAATCT+AGG | - | chr2_1:16595736-16595755 | Msa0198050:intron | 30.0% | |
| ACGACACAAAATAGAAACAA+AGG | + | chr2_1:16595781-16595800 | None:intergenic | 30.0% | |
| ! | GCTACTTGAACAATTTTGTT+TGG | - | chr2_1:16595860-16595879 | Msa0198050:intron | 30.0% |
| ! | TTAAAGGCCTACTATTTTCA+TGG | - | chr2_1:16596166-16596185 | Msa0198050:intron | 30.0% |
| ATTTGGACCATGAAAATAGT+AGG | + | chr2_1:16596176-16596195 | None:intergenic | 30.0% | |
| ! | TACTATTTTCATGGTCCAAA+TGG | - | chr2_1:16596175-16596194 | Msa0198050:intron | 30.0% |
| ! | ACTATTTTCATGGTCCAAAT+GGG | - | chr2_1:16596176-16596195 | Msa0198050:intron | 30.0% |
| GTAATTCGAAGAATAAACAC+CGG | + | chr2_1:16596232-16596251 | None:intergenic | 30.0% | |
| AAAATAAGATTTGGAGATGG+GGG | + | chr2_1:16596606-16596625 | None:intergenic | 30.0% | |
| CAAAATAAGATTTGGAGATG+GGG | + | chr2_1:16596607-16596626 | None:intergenic | 30.0% | |
| TATAAATTTCCGTGCTATAG+TGG | + | chr2_1:16596682-16596701 | None:intergenic | 30.0% | |
| GATAAAAATTAAGAGTCTGC+AGG | + | chr2_1:16596753-16596772 | None:intergenic | 30.0% | |
| ! | TGGAAAAGCTTAAAAAGTAC+TGG | + | chr2_1:16597062-16597081 | None:intergenic | 30.0% |
| ACATAACTATTGTAAGGGAA+TGG | + | chr2_1:16597082-16597101 | None:intergenic | 30.0% | |
| GGAAGCTTTCTTCTATTATA+AGG | - | chr2_1:16597135-16597154 | Msa0198050:intron | 30.0% | |
| !! | TTATAAGGCTTTGTTACAGA+AGG | - | chr2_1:16597150-16597169 | Msa0198050:intron | 30.0% |
| AGAAGGCTTACAAGTATATT+AGG | - | chr2_1:16597167-16597186 | Msa0198050:intron | 30.0% | |
| TTTGGATCATATTAGTGTTC+GGG | + | chr2_1:16597462-16597481 | None:intergenic | 30.0% | |
| GTTTGGATCATATTAGTGTT+CGG | + | chr2_1:16597463-16597482 | None:intergenic | 30.0% | |
| GACTGTTGGTATTATAGTAT+TGG | - | chr2_1:16597547-16597566 | Msa0198050:intron | 30.0% | |
| !!! | AGAATTTTTTGCAACAGCTA+TGG | + | chr2_1:16597721-16597740 | None:intergenic | 30.0% |
| !!! | ATTTTTGTTGTTTCTGGTAC+AGG | - | chr2_1:16597817-16597836 | Msa0198050:CDS | 30.0% |
| !!! | TTTTTGTTGTTTCTGGTACA+GGG | - | chr2_1:16597818-16597837 | Msa0198050:CDS | 30.0% |
| CATTTGCTTATCGACAACAA+TGG | + | chr2_1:16595594-16595613 | None:intergenic | 35.0% | |
| CATTGTTGTCGATAAGCAAA+TGG | - | chr2_1:16595592-16595611 | Msa0198050:intron | 35.0% | |
| ATTAACAACCTTGACCACAA+GGG | - | chr2_1:16595644-16595663 | Msa0198050:intron | 35.0% | |
| ! | ATGTTGTCAATCTAGGATAG+TGG | - | chr2_1:16595743-16595762 | Msa0198050:intron | 35.0% |
| TGTTGATCTCGTGCAATTAA+AGG | - | chr2_1:16596150-16596169 | Msa0198050:intron | 35.0% | |
| ACTCATAAAAACTGTGTCAG+AGG | - | chr2_1:16596338-16596357 | Msa0198050:intron | 35.0% | |
| AAATAAGATTTGGAGATGGG+GGG | + | chr2_1:16596605-16596624 | None:intergenic | 35.0% | |
| ! | AAAGCACTACCCATGAATAA+TGG | + | chr2_1:16596705-16596724 | None:intergenic | 35.0% |
| GGGTAGTGCTTTCAAATATA+AGG | - | chr2_1:16596713-16596732 | Msa0198050:intron | 35.0% | |
| AAAATTAAGAGTCTGCAGGA+GGG | + | chr2_1:16596749-16596768 | None:intergenic | 35.0% | |
| AAAAATTAAGAGTCTGCAGG+AGG | + | chr2_1:16596750-16596769 | None:intergenic | 35.0% | |
| AATTTCCAAAGTGAAGTCTC+TGG | + | chr2_1:16596819-16596838 | None:intergenic | 35.0% | |
| TTGCGTTCTTAGTATGATGA+TGG | - | chr2_1:16596850-16596869 | Msa0198050:intron | 35.0% | |
| !!! | CTATGCAAAATTTTTGGAGC+TGG | - | chr2_1:16596892-16596911 | Msa0198050:intron | 35.0% |
| !! | CTACCATTCTTTTGAAAAGC+TGG | - | chr2_1:16597114-16597133 | Msa0198050:intron | 35.0% |
| ! | CTTCCAGCTTTTCAAAAGAA+TGG | + | chr2_1:16597120-16597139 | None:intergenic | 35.0% |
| CATGTCGGAGAATATTATGA+GGG | + | chr2_1:16597419-16597438 | None:intergenic | 35.0% | |
| ATGGAGTTAACGATTACAGA+TGG | - | chr2_1:16597606-16597625 | Msa0198050:intron | 35.0% | |
| ! | GGATTTTAGGCCTTCTTATA+TGG | + | chr2_1:16597636-16597655 | None:intergenic | 35.0% |
| !!! | TTTTGTTGTTTCTGGTACAG+GGG | - | chr2_1:16597819-16597838 | Msa0198050:CDS | 35.0% |
| TTAATAGCTTCAGTTGGACA+CGG | + | chr2_1:16597881-16597900 | None:intergenic | 35.0% | |
| CGGTTAAAAGAAGCTTGGAA+GGG | + | chr2_1:16595069-16595088 | None:intergenic | 40.0% | |
| TCGGTTAAAAGAAGCTTGGA+AGG | + | chr2_1:16595070-16595089 | None:intergenic | 40.0% | |
| TCTCTCGGTTAAAAGAAGCT+TGG | + | chr2_1:16595074-16595093 | None:intergenic | 40.0% | |
| CGTGTATAACAGTCTTCTCT+CGG | + | chr2_1:16595089-16595108 | None:intergenic | 40.0% | |
| CGAGAGAAGACTGTTATACA+CGG | - | chr2_1:16595087-16595106 | Msa0198050:intron | 40.0% | |
| GAGAGAAGACTGTTATACAC+GGG | - | chr2_1:16595088-16595107 | Msa0198050:intron | 40.0% | |
| CAGATCTCACTTTCTTCAAC+TGG | - | chr2_1:16595278-16595297 | Msa0198050:intron | 40.0% | |
| ATCTCACTTTCTTCAACTGG+AGG | - | chr2_1:16595281-16595300 | Msa0198050:intron | 40.0% | |
| TCTCACTTTCTTCAACTGGA+GGG | - | chr2_1:16595282-16595301 | Msa0198050:intron | 40.0% | |
| CAACTGGAGGGAAAACTATA+AGG | - | chr2_1:16595294-16595313 | Msa0198050:intron | 40.0% | |
| GTCAATTACAGTCATCTGCA+AGG | + | chr2_1:16595468-16595487 | None:intergenic | 40.0% | |
| GGAGTGAAATGAACATGATC+AGG | + | chr2_1:16595494-16595513 | None:intergenic | 40.0% | |
| TCATGTTCATTTCACTCCTG+AGG | - | chr2_1:16595496-16595515 | Msa0198050:intron | 40.0% | |
| CATTAACAACCTTGACCACA+AGG | - | chr2_1:16595643-16595662 | Msa0198050:intron | 40.0% | |
| ! | AATAGCAGTATGAAGCACCA+CGG | + | chr2_1:16595813-16595832 | None:intergenic | 40.0% |
| ! | AGTTCAAGTTCCAATAGGCT+TGG | - | chr2_1:16596108-16596127 | Msa0198050:intron | 40.0% |
| GTTTCAGAAACAGACCCATT+TGG | + | chr2_1:16596193-16596212 | None:intergenic | 40.0% | |
| TGAAGAACTTCCTGCAGATA+TGG | - | chr2_1:16596287-16596306 | Msa0198050:intron | 40.0% | |
| !! | AAGCCTTGGTGTCAGAAAAA+AGG | - | chr2_1:16596310-16596329 | Msa0198050:intron | 40.0% |
| !!! | ATGCCTTTTTTCTGACACCA+AGG | + | chr2_1:16596316-16596335 | None:intergenic | 40.0% |
| CATAAAAACTGTGTCAGAGG+TGG | - | chr2_1:16596341-16596360 | Msa0198050:intron | 40.0% | |
| TCAAGATCAGCTGCTGATAT+GGG | + | chr2_1:16596402-16596421 | None:intergenic | 40.0% | |
| AAATTAAGAGTCTGCAGGAG+GGG | + | chr2_1:16596748-16596767 | None:intergenic | 40.0% | |
| !! | AGTATGATGATGGCTACTAG+TGG | - | chr2_1:16596860-16596879 | Msa0198050:intron | 40.0% |
| TGTTAGACATCAATCCCTCT+AGG | - | chr2_1:16597366-16597385 | Msa0198050:CDS | 40.0% | |
| AGCGAAGATGATATCCTAGA+GGG | + | chr2_1:16597383-16597402 | None:intergenic | 40.0% | |
| TAGCGAAGATGATATCCTAG+AGG | + | chr2_1:16597384-16597403 | None:intergenic | 40.0% | |
| AGGATATCATCTTCGCTATC+AGG | - | chr2_1:16597386-16597405 | Msa0198050:CDS | 40.0% | |
| GCATGTCGGAGAATATTATG+AGG | + | chr2_1:16597420-16597439 | None:intergenic | 40.0% | |
| GAGTTAACGATTACAGATGG+TGG | - | chr2_1:16597609-16597628 | Msa0198050:intron | 40.0% | |
| !! | AGATGGTGGACCATATAAGA+AGG | - | chr2_1:16597623-16597642 | Msa0198050:intron | 40.0% |
| ! | GGCTAAAAGTGGAGGATTTT+AGG | + | chr2_1:16597649-16597668 | None:intergenic | 40.0% |
| ! | GCGTTTTATGGCAGAAATAG+CGG | + | chr2_1:16597670-16597689 | None:intergenic | 40.0% |
| ATGTTGTCAAATAGTGGCCA+TGG | + | chr2_1:16597757-16597776 | None:intergenic | 40.0% | |
| ! | ACAGGGGTTACAACTACTTT+TGG | - | chr2_1:16597835-16597854 | Msa0198050:CDS | 40.0% |
| !! | GGGTTACAACTACTTTTGGA+TGG | - | chr2_1:16597839-16597858 | Msa0198050:CDS | 40.0% |
| AAAGAAGCTTGGAAGGGTCA+AGG | + | chr2_1:16595063-16595082 | None:intergenic | 45.0% | |
| TCGATAAGATGGAGGATGCT+AGG | - | chr2_1:16595116-16595135 | Msa0198050:intron | 45.0% | |
| GGATGCTAGGTGTGAAATTC+AGG | - | chr2_1:16595129-16595148 | Msa0198050:intron | 45.0% | |
| GAGATCTGCAGTGATAGAGT+CGG | + | chr2_1:16595266-16595285 | None:intergenic | 45.0% | |
| GCTTATCGACAACAATGGAG+TGG | + | chr2_1:16595589-16595608 | None:intergenic | 45.0% | |
| ACCTGATTCACAACTTCCCA+CGG | + | chr2_1:16595677-16595696 | None:intergenic | 45.0% | |
| ! | GCTGCAGTTCAAGTTCCAAT+AGG | - | chr2_1:16596103-16596122 | Msa0198050:intron | 45.0% |
| !! | GGTGGATGATAAACTTGCTG+AGG | - | chr2_1:16596359-16596378 | Msa0198050:intron | 45.0% |
| CTCAAGATCAGCTGCTGATA+TGG | + | chr2_1:16596403-16596422 | None:intergenic | 45.0% | |
| CATATCAGCAGCTGATCTTG+AGG | - | chr2_1:16596401-16596420 | Msa0198050:intron | 45.0% | |
| TTCGTAGAGCCACTATAGCA+CGG | - | chr2_1:16596670-16596689 | Msa0198050:intron | 45.0% | |
| AATTAAGAGTCTGCAGGAGG+GGG | + | chr2_1:16596747-16596766 | None:intergenic | 45.0% | |
| GTCTTCCAGAGACTTCACTT+TGG | - | chr2_1:16596811-16596830 | Msa0198050:CDS | 45.0% | |
| ! | TTAGGAGACAAAGCACCAAG+AGG | - | chr2_1:16597185-16597204 | Msa0198050:intron | 45.0% |
| CACCAAGAGGTTTGCAATTC+TGG | - | chr2_1:16597198-16597217 | Msa0198050:intron | 45.0% | |
| CTCCAGAATTGCAAACCTCT+TGG | + | chr2_1:16597203-16597222 | None:intergenic | 45.0% | |
| CTGGAGCATGTCATTAGTGT+TGG | - | chr2_1:16597217-16597236 | Msa0198050:intron | 45.0% | |
| CTATGTGTGTGCATGCATGT+CGG | + | chr2_1:16597434-16597453 | None:intergenic | 45.0% | |
| !! | AGCGCTTCTGCTATTTCGAA+TGG | - | chr2_1:16597587-16597606 | Msa0198050:intron | 45.0% |
| GAAATAGCGGCTAAAAGTGG+AGG | + | chr2_1:16597657-16597676 | None:intergenic | 45.0% | |
| GCAGAAATAGCGGCTAAAAG+TGG | + | chr2_1:16597660-16597679 | None:intergenic | 45.0% | |
| TGCCGACATCCTTCACAAAT+TGG | - | chr2_1:16597695-16597714 | Msa0198050:intron | 45.0% | |
| GGCCAATTTGTGAAGGATGT+CGG | + | chr2_1:16597700-16597719 | None:intergenic | 45.0% | |
| CAGCTATGGCCAATTTGTGA+AGG | + | chr2_1:16597707-16597726 | None:intergenic | 45.0% | |
| TTCTTCACTGCAATCTGCCA+TGG | - | chr2_1:16597737-16597756 | Msa0198050:CDS | 45.0% | |
| !! | GGTGGTGGACGAACTCTTAT+CGG | + | chr2_1:16594987-16595006 | None:intergenic | 50.0% |
| CACGGGTGAGATCGATAAGA+TGG | - | chr2_1:16595105-16595124 | Msa0198050:intron | 50.0% | |
| GGGTGAGATCGATAAGATGG+AGG | - | chr2_1:16595108-16595127 | Msa0198050:intron | 50.0% | |
| ! | TCATGGCGGAAGCTAGGTTT+GGG | - | chr2_1:16595190-16595209 | Msa0198050:intron | 50.0% |
| CGGAAGCTAGGTTTGGGAAA+AGG | - | chr2_1:16595196-16595215 | Msa0198050:intron | 50.0% | |
| TTAGCCGCACAGTTCTCAAC+TGG | - | chr2_1:16595224-16595243 | Msa0198050:intron | 50.0% | |
| TAGCCGCACAGTTCTCAACT+GGG | - | chr2_1:16595225-16595244 | Msa0198050:intron | 50.0% | |
| ACACCCAGTTGAGAACTGTG+CGG | + | chr2_1:16595231-16595250 | None:intergenic | 50.0% | |
| GCAGTGATAGAGTCGGACTT+GGG | + | chr2_1:16595259-16595278 | None:intergenic | 50.0% | |
| TGCAGTGATAGAGTCGGACT+TGG | + | chr2_1:16595260-16595279 | None:intergenic | 50.0% | |
| ! | CGCAGAGCATTCTTAACCTC+AGG | + | chr2_1:16595515-16595534 | None:intergenic | 50.0% |
| ! | GATTTGCTCCCTTGTGGTCA+AGG | + | chr2_1:16595655-16595674 | None:intergenic | 50.0% |
| TCCGTGGGAAGTTGTGAATC+AGG | - | chr2_1:16595673-16595692 | Msa0198050:intron | 50.0% | |
| TCCTGCAGATATGGAAGCCT+TGG | - | chr2_1:16596296-16596315 | Msa0198050:intron | 50.0% | |
| ACCAAGGCTTCCATATCTGC+AGG | + | chr2_1:16596300-16596319 | None:intergenic | 50.0% | |
| ! | CTTGCTGAGGCTTTTTGCAG+TGG | - | chr2_1:16596372-16596391 | Msa0198050:intron | 50.0% |
| AGCTGATCTTGAGGTGTGTG+TGG | - | chr2_1:16596410-16596429 | Msa0198050:intron | 50.0% | |
| GCTGATCTTGAGGTGTGTGT+GGG | - | chr2_1:16596411-16596430 | Msa0198050:intron | 50.0% | |
| AAGATTTGGAGATGGGGGGT+GGG | + | chr2_1:16596601-16596620 | None:intergenic | 50.0% | |
| TAAGATTTGGAGATGGGGGG+TGG | + | chr2_1:16596602-16596621 | None:intergenic | 50.0% | |
| ATTAAGAGTCTGCAGGAGGG+GGG | + | chr2_1:16596746-16596765 | None:intergenic | 50.0% | |
| CGACATGCATGCACACACAT+AGG | - | chr2_1:16597432-16597451 | Msa0198050:CDS | 50.0% | |
| ! | GTCGGCACAATGGCGTTTTA+TGG | + | chr2_1:16597682-16597701 | None:intergenic | 50.0% |
| TGTGAAGGATGTCGGCACAA+TGG | + | chr2_1:16597692-16597711 | None:intergenic | 50.0% | |
| GCTACGCAACGTCTGGATCT+CGG | - | chr2_1:16595033-16595052 | Msa0198050:CDS | 55.0% | |
| CTACGCAACGTCTGGATCTC+GGG | - | chr2_1:16595034-16595053 | Msa0198050:CDS | 55.0% | |
| ! | CAAGAGTCATGGCGGAAGCT+AGG | - | chr2_1:16595184-16595203 | Msa0198050:intron | 55.0% |
| ! | GTCATGGCGGAAGCTAGGTT+TGG | - | chr2_1:16595189-16595208 | Msa0198050:intron | 55.0% |
| AATGCTCTGCGTGCCTTCGA+CGG | - | chr2_1:16595524-16595543 | Msa0198050:intron | 55.0% | |
| AACAAGTACGGCACCGTCGA+AGG | + | chr2_1:16595540-16595559 | None:intergenic | 55.0% | |
| ACCACAAGGGAGCAAATCCG+TGG | - | chr2_1:16595657-16595676 | Msa0198050:intron | 55.0% | |
| CCACAAGGGAGCAAATCCGT+GGG | - | chr2_1:16595658-16595677 | Msa0198050:intron | 55.0% | |
| TGTGTCGTGCATTGCAACCG+TGG | - | chr2_1:16595793-16595812 | Msa0198050:intron | 55.0% | |
| AGATTTGGAGATGGGGGGTG+GGG | + | chr2_1:16596600-16596619 | None:intergenic | 55.0% | |
| TGAGAGGCGGTCGAAAGTGG+TGG | + | chr2_1:16595005-16595024 | None:intergenic | 60.0% | |
| AGGTGAGAGGCGGTCGAAAG+TGG | + | chr2_1:16595008-16595027 | None:intergenic | 60.0% | |
| ! | CCCACGGATTTGCTCCCTTG+TGG | + | chr2_1:16595661-16595680 | None:intergenic | 60.0% |
| GATTTGGAGATGGGGGGTGG+GGG | + | chr2_1:16596599-16596618 | None:intergenic | 60.0% | |
| GAGGCGGTCGAAAGTGGTGG+TGG | + | chr2_1:16595002-16595021 | None:intergenic | 65.0% | |
| TCGACCGCCTCTCACCTGAG+CGG | - | chr2_1:16595011-16595030 | Msa0198050:CDS | 65.0% | |
| GTAGCCGCTCAGGTGAGAGG+CGG | + | chr2_1:16595018-16595037 | None:intergenic | 65.0% | |
| TGCGTAGCCGCTCAGGTGAG+AGG | + | chr2_1:16595021-16595040 | None:intergenic | 65.0% | |
| CAGACGTTGCGTAGCCGCTC+AGG | + | chr2_1:16595028-16595047 | None:intergenic | 65.0% | |
| CTGAGCGGCTACGCAACGTC+TGG | - | chr2_1:16595026-16595045 | Msa0198050:CDS | 65.0% | |
| GGTGGGGGAGAAGTGACAGC+TGG | + | chr2_1:16596584-16596603 | None:intergenic | 65.0% | |
| AGAGTCTGCAGGAGGGGGGT+AGG | + | chr2_1:16596742-16596761 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 16594971 | 16597958 | 16594971 | ID=Msa0198050;Name=Msa0198050 |
| chr2_1 | mRNA | 16594971 | 16597958 | 16594971 | ID=Msa0198050-mRNA-1;Parent=Msa0198050;Name=Msa0198050-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0.4|0|1|0.8|0.83|6|0|311 |
| chr2_1 | exon | 16597710 | 16597958 | 16597710 | ID=Msa0198050-mRNA-1:exon:6904;Parent=Msa0198050-mRNA-1 |
| chr2_1 | exon | 16597235 | 16597456 | 16597235 | ID=Msa0198050-mRNA-1:exon:6903;Parent=Msa0198050-mRNA-1 |
| chr2_1 | exon | 16596732 | 16596853 | 16596732 | ID=Msa0198050-mRNA-1:exon:6902;Parent=Msa0198050-mRNA-1 |
| chr2_1 | exon | 16596507 | 16596657 | 16596507 | ID=Msa0198050-mRNA-1:exon:6901;Parent=Msa0198050-mRNA-1 |
| chr2_1 | exon | 16596195 | 16596266 | 16596195 | ID=Msa0198050-mRNA-1:exon:6900;Parent=Msa0198050-mRNA-1 |
| chr2_1 | exon | 16594971 | 16595090 | 16594971 | ID=Msa0198050-mRNA-1:exon:6899;Parent=Msa0198050-mRNA-1 |
| chr2_1 | CDS | 16597710 | 16597958 | 16597710 | ID=Msa0198050-mRNA-1:cds;Parent=Msa0198050-mRNA-1 |
| chr2_1 | CDS | 16597235 | 16597456 | 16597235 | ID=Msa0198050-mRNA-1:cds;Parent=Msa0198050-mRNA-1 |
| chr2_1 | CDS | 16596732 | 16596853 | 16596732 | ID=Msa0198050-mRNA-1:cds;Parent=Msa0198050-mRNA-1 |
| chr2_1 | CDS | 16596507 | 16596657 | 16596507 | ID=Msa0198050-mRNA-1:cds;Parent=Msa0198050-mRNA-1 |
| chr2_1 | CDS | 16596195 | 16596266 | 16596195 | ID=Msa0198050-mRNA-1:cds;Parent=Msa0198050-mRNA-1 |
| chr2_1 | CDS | 16594971 | 16595090 | 16594971 | ID=Msa0198050-mRNA-1:cds;Parent=Msa0198050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
