Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0278690 | XP_003594522.1 | 97.945 | 146 | 3 | 0 | 1 | 146 | 1 | 146 | 1.09e-100 | 297 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0278690 | sp|Q84JP1|NFYA7_ARATH | 55.405 | 148 | 49 | 6 | 1 | 146 | 1 | 133 | 1.32e-41 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0278690 | G7IKU2 | 97.945 | 146 | 3 | 0 | 1 | 146 | 1 | 146 | 5.20e-101 | 297 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0278690 | TF | NF-YA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0278690 | Msa0616560 | -0.810262 | 1.258269e-50 | -8.615850e-47 |
| Msa0278690 | Msa0655990 | -0.807205 | 5.663792e-50 | -8.615850e-47 |
| Msa0278690 | Msa1257870 | -0.801799 | 7.591769e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0278690 | MtrunA17_Chr2g0292411 | 97.945 | 146 | 3 | 0 | 1 | 146 | 1 | 146 | 1.00e-104 | 297 |
| Msa0278690 | MtrunA17_Chr3g0103391 | 49.020 | 102 | 36 | 4 | 48 | 146 | 116 | 204 | 7.38e-21 | 86.3 |
| Msa0278690 | MtrunA17_Chr8g0352251 | 65.574 | 61 | 21 | 0 | 86 | 146 | 127 | 187 | 5.50e-18 | 78.2 |
| Msa0278690 | MtrunA17_Chr8g0343451 | 42.424 | 99 | 46 | 3 | 49 | 146 | 110 | 198 | 8.77e-17 | 75.1 |
| Msa0278690 | MtrunA17_Chr2g0300261 | 48.837 | 86 | 37 | 4 | 62 | 146 | 32 | 111 | 7.01e-16 | 71.6 |
| Msa0278690 | MtrunA17_Chr2g0329811 | 38.835 | 103 | 59 | 3 | 47 | 146 | 118 | 219 | 2.35e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0278690 | AT1G30500.2 | 55.405 | 148 | 49 | 6 | 1 | 146 | 1 | 133 | 1.34e-42 | 139 |
| Msa0278690 | AT1G30500.1 | 54.054 | 148 | 47 | 6 | 1 | 146 | 1 | 129 | 2.50e-40 | 134 |
| Msa0278690 | AT2G34720.1 | 49.324 | 148 | 56 | 6 | 1 | 146 | 1 | 131 | 3.07e-35 | 121 |
| Msa0278690 | AT2G34720.2 | 65.882 | 85 | 23 | 2 | 62 | 146 | 18 | 96 | 3.94e-31 | 109 |
| Msa0278690 | AT2G34720.3 | 65.882 | 85 | 23 | 2 | 62 | 146 | 18 | 96 | 3.94e-31 | 109 |
| Msa0278690 | AT3G20910.1 | 48.485 | 99 | 40 | 2 | 48 | 146 | 112 | 199 | 8.04e-22 | 89.0 |
| Msa0278690 | AT5G12840.5 | 48.000 | 100 | 40 | 3 | 47 | 146 | 118 | 205 | 2.43e-19 | 81.6 |
| Msa0278690 | AT5G12840.3 | 48.000 | 100 | 40 | 3 | 47 | 146 | 118 | 205 | 2.43e-19 | 81.6 |
| Msa0278690 | AT5G12840.1 | 48.000 | 100 | 40 | 3 | 47 | 146 | 118 | 205 | 2.43e-19 | 81.6 |
| Msa0278690 | AT5G12840.4 | 48.000 | 100 | 40 | 3 | 47 | 146 | 117 | 204 | 2.58e-19 | 81.6 |
| Msa0278690 | AT5G12840.2 | 48.000 | 100 | 40 | 3 | 47 | 146 | 117 | 204 | 2.58e-19 | 81.6 |
| Msa0278690 | AT1G72830.2 | 44.828 | 87 | 39 | 3 | 61 | 146 | 134 | 212 | 1.51e-14 | 69.3 |
| Msa0278690 | AT1G72830.1 | 44.828 | 87 | 39 | 3 | 61 | 146 | 134 | 212 | 1.53e-14 | 69.3 |
| Msa0278690 | AT1G54160.1 | 55.556 | 54 | 23 | 1 | 94 | 146 | 158 | 211 | 8.20e-13 | 64.3 |
| Msa0278690 | AT1G17590.3 | 41.379 | 87 | 37 | 3 | 61 | 146 | 132 | 205 | 2.84e-12 | 63.2 |
| Msa0278690 | AT1G17590.2 | 41.379 | 87 | 37 | 3 | 61 | 146 | 132 | 205 | 2.84e-12 | 63.2 |
| Msa0278690 | AT1G17590.4 | 41.379 | 87 | 37 | 3 | 61 | 146 | 132 | 205 | 2.84e-12 | 63.2 |
| Msa0278690 | AT1G17590.1 | 41.379 | 87 | 37 | 3 | 61 | 146 | 132 | 205 | 2.84e-12 | 63.2 |
Find 54 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGAAGTGTTGTTGAGTT+TGG | 0.290996 | 2_3:+11766253 | None:intergenic |
| CCAGGCCAATCTTCAGTTAA+TGG | 0.300525 | 2_3:-11761203 | Msa0278690:intron |
| CGGATAAGGTTGTGCATCAT+AGG | 0.313332 | 2_3:+11761348 | None:intergenic |
| CTGTAGTAGGGATCCGGATA+TGG | 0.349828 | 2_3:+11761385 | None:intergenic |
| CCGTAGGGTTGCGGCGGATA+AGG | 0.368018 | 2_3:+11761334 | None:intergenic |
| GGACAGAGTGCATGTGAATC+AGG | 0.390221 | 2_3:-11764760 | Msa0278690:five_prime_UTR |
| GAAATTCCGTTTGCAGATAT+AGG | 0.399724 | 2_3:+11763984 | None:intergenic |
| AATTCCCATTAACTGAAGAT+TGG | 0.417171 | 2_3:+11761198 | None:intergenic |
| AGCAAAGATGCTTCTGTAGT+AGG | 0.425029 | 2_3:+11761372 | None:intergenic |
| ATTGAAGTGTTGTTGAGTTT+GGG | 0.431136 | 2_3:+11766254 | None:intergenic |
| CAGGCCAATCTTCAGTTAAT+GGG | 0.435926 | 2_3:-11761202 | Msa0278690:CDS |
| AAAAGAAAGTTACACGGAAT+CGG | 0.459956 | 2_3:-11761060 | Msa0278690:CDS |
| GCACCTCCACAGCTTGGCAC+GGG | 0.466695 | 2_3:-11763921 | Msa0278690:CDS |
| TGGGTGGGTGTCGTATGGAT+TGG | 0.471637 | 2_3:-11766373 | None:intergenic |
| TGATTTGGGTGGGTGTCGTA+TGG | 0.473513 | 2_3:-11766378 | None:intergenic |
| ACCACCTGCTTATCCATATC+CGG | 0.479165 | 2_3:-11761398 | Msa0278690:CDS |
| CGCCGGTGTTGATAATGCTC+AGG | 0.486893 | 2_3:-11763958 | Msa0278690:CDS |
| GCAAAGATGCTTCTGTAGTA+GGG | 0.499527 | 2_3:+11761373 | None:intergenic |
| GTGGGTGTCGTATGGATTGG+TGG | 0.505662 | 2_3:-11766370 | Msa0278690:five_prime_UTR |
| GTCAATGCAAAACAGTATCA+TGG | 0.506073 | 2_3:-11761124 | Msa0278690:CDS |
| TGTTGTTGAGTTTGGGACAG+TGG | 0.506320 | 2_3:+11766261 | None:intergenic |
| ATGCTTCTGTAGTAGGGATC+CGG | 0.507422 | 2_3:+11761379 | None:intergenic |
| GGATAAGGTTGTGCATCATA+GGG | 0.522061 | 2_3:+11761349 | None:intergenic |
| GCTTGGCACGGGGCATGCTA+TGG | 0.522353 | 2_3:-11763910 | Msa0278690:intron |
| GGATGTCCACCGTAGGGTTG+CGG | 0.523458 | 2_3:+11761325 | None:intergenic |
| AGCACCTCCACAGCTTGGCA+CGG | 0.523882 | 2_3:-11763922 | Msa0278690:CDS |
| TTTGCCAACTGATGCAGTTG+AGG | 0.525775 | 2_3:-11761158 | Msa0278690:CDS |
| GCATGCCCCGTGCCAAGCTG+TGG | 0.532400 | 2_3:+11763915 | None:intergenic |
| CCTTATCCGCCGCAACCCTA+CGG | 0.540441 | 2_3:-11761334 | Msa0278690:CDS |
| TGCCCCGTGCCAAGCTGTGG+AGG | 0.541599 | 2_3:+11763918 | None:intergenic |
| GGATCCGGATATGGATAAGC+AGG | 0.543946 | 2_3:+11761394 | None:intergenic |
| GGCTCCTCAACTGCATCAGT+TGG | 0.545637 | 2_3:+11761154 | None:intergenic |
| ACCCTACGGTGGACATCCAA+TGG | 0.560327 | 2_3:-11761320 | Msa0278690:intron |
| ATGCAGCCTATATCTGCAAA+CGG | 0.566429 | 2_3:-11763990 | Msa0278690:CDS |
| CACCTCCACAGCTTGGCACG+GGG | 0.573071 | 2_3:-11763920 | Msa0278690:CDS |
| TGTCCAGATAACGAGGCTGA+TGG | 0.582397 | 2_3:-11764035 | Msa0278690:intron |
| ACCATTGGATGTCCACCGTA+GGG | 0.583635 | 2_3:+11761319 | None:intergenic |
| TATGCAGCACCTCCACAGCT+TGG | 0.593812 | 2_3:-11763927 | Msa0278690:CDS |
| TCAACTGCATCAGTTGGCAA+AGG | 0.603408 | 2_3:+11761160 | None:intergenic |
| GGATATGGATAAGCAGGTGG+TGG | 0.616937 | 2_3:+11761400 | None:intergenic |
| GAAAGTTACACGGAATCGGA+AGG | 0.621098 | 2_3:-11761056 | None:intergenic |
| GAATTGAAAATGATAGAAGA+AGG | 0.623593 | 2_3:+11766222 | None:intergenic |
| TATCCGCCGCAACCCTACGG+TGG | 0.624811 | 2_3:-11761331 | Msa0278690:CDS |
| TTAATGGGAATTCAGCATGC+AGG | 0.625390 | 2_3:-11761187 | Msa0278690:CDS |
| ATCATGTGTGGAAGAAGTCA+TGG | 0.636060 | 2_3:+11764734 | None:intergenic |
| TCTTCCACACATGATCCCAC+AGG | 0.647344 | 2_3:-11764726 | Msa0278690:intron |
| TGTCCACCGTAGGGTTGCGG+CGG | 0.648752 | 2_3:+11761328 | None:intergenic |
| AACCATTGGATGTCCACCGT+AGG | 0.650023 | 2_3:+11761318 | None:intergenic |
| AACCTGAGCATTATCAACAC+CGG | 0.660808 | 2_3:+11763956 | None:intergenic |
| AATACCTGTGGGATCATGTG+TGG | 0.669627 | 2_3:+11764722 | None:intergenic |
| TCCGGATATGGATAAGCAGG+TGG | 0.669883 | 2_3:+11761397 | None:intergenic |
| AAATTGTTGTCCAGATAACG+AGG | 0.691918 | 2_3:-11764042 | Msa0278690:intron |
| AATCAGAAAAGAAAGTTACA+CGG | 0.697568 | 2_3:-11761066 | Msa0278690:CDS |
| GCAAACGGAATTTCTCACGC+CGG | 0.723309 | 2_3:-11763975 | Msa0278690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACTAATAACATAATAA+TGG | + | chr2_3:11763231-11763250 | None:intergenic | 10.0% |
| !!! | TAAATGTATTAAATTTGTTA+AGG | + | chr2_3:11764472-11764491 | None:intergenic | 10.0% |
| !!! | TTTTTTAATCTTAAAATTGA+AGG | - | chr2_3:11765762-11765781 | Msa0278690:intron | 10.0% |
| !! | ATCTAAAAAGATTCAAAATT+TGG | + | chr2_3:11761327-11761346 | None:intergenic | 15.0% |
| !!! | AAAATTTAGAATTGTCATTT+TGG | - | chr2_3:11761702-11761721 | Msa0278690:intron | 15.0% |
| !! | TATTAGTTAAACTTATTATG+AGG | - | chr2_3:11761804-11761823 | Msa0278690:intron | 15.0% |
| !! | TAGAAAAATCTATAATTGAA+TGG | - | chr2_3:11762535-11762554 | Msa0278690:intron | 15.0% |
| !! | TTGATAAAACAAAATCATTT+AGG | - | chr2_3:11762768-11762787 | Msa0278690:intron | 15.0% |
| !! | TATCAGTACTTAAATATATT+AGG | + | chr2_3:11762871-11762890 | None:intergenic | 15.0% |
| !! | CTAACTCATTTAAAAATTAA+AGG | + | chr2_3:11763816-11763835 | None:intergenic | 15.0% |
| !!! | TTATTTTAACTTTTTGGTTT+TGG | - | chr2_3:11763987-11764006 | Msa0278690:CDS | 15.0% |
| !!! | TATTTTAACTTTTTGGTTTT+GGG | - | chr2_3:11763988-11764007 | Msa0278690:CDS | 15.0% |
| !!! | TTTCTGACATTATTAATTTT+TGG | + | chr2_3:11765483-11765502 | None:intergenic | 15.0% |
| !! | AAATTAATAATGTCAGAAAT+TGG | - | chr2_3:11765484-11765503 | Msa0278690:intron | 15.0% |
| !!! | CAAAGTTTACATTTTAAAAT+AGG | + | chr2_3:11765957-11765976 | None:intergenic | 15.0% |
| !! | TTTATCTTATGCTTGAAAAT+TGG | - | chr2_3:11761407-11761426 | Msa0278690:intron | 20.0% |
| !! | TTATCTTATGCTTGAAAATT+GGG | - | chr2_3:11761408-11761427 | Msa0278690:intron | 20.0% |
| !!! | TTTTGGGTTTTTAATTTTCA+TGG | - | chr2_3:11761514-11761533 | Msa0278690:intron | 20.0% |
| !!! | AAGGAAAAAATTGCAATTTT+TGG | - | chr2_3:11761548-11761567 | Msa0278690:intron | 20.0% |
| !!! | AGGAAAAAATTGCAATTTTT+GGG | - | chr2_3:11761549-11761568 | Msa0278690:intron | 20.0% |
| !! | ATTTGATTATGCTTATTAGA+TGG | - | chr2_3:11761584-11761603 | Msa0278690:intron | 20.0% |
| !! | CATACATTCAAATTGTATAA+GGG | + | chr2_3:11762004-11762023 | None:intergenic | 20.0% |
| !! | CATTAAATGATTGATTAACT+AGG | - | chr2_3:11762119-11762138 | Msa0278690:intron | 20.0% |
| !! | TGATAGAATTATTGTAAACA+GGG | - | chr2_3:11762886-11762905 | Msa0278690:intron | 20.0% |
| !!! | CAAATTCTTTAGAATGTTTT+TGG | - | chr2_3:11763658-11763677 | Msa0278690:intron | 20.0% |
| !!! | AGACAATTTTAGTTTTTTGA+AGG | - | chr2_3:11764109-11764128 | Msa0278690:intron | 20.0% |
| !!! | TTGTTTCTTATAAAAAGAAC+CGG | + | chr2_3:11764514-11764533 | None:intergenic | 20.0% |
| !! | ATGCAAACTGAAAATAAAAA+AGG | + | chr2_3:11764951-11764970 | None:intergenic | 20.0% |
| !!! | AATGAATTTCATTTTCTGAA+AGG | + | chr2_3:11764982-11765001 | None:intergenic | 20.0% |
| !!! | TTATCATTTTTCAATTGCTA+GGG | + | chr2_3:11765006-11765025 | None:intergenic | 20.0% |
| !! | TGTAAATTAACATTACTTAG+AGG | - | chr2_3:11765696-11765715 | Msa0278690:intron | 20.0% |
| !!! | AAACTTTGTTTATGCTTTAA+CGG | - | chr2_3:11765969-11765988 | Msa0278690:intron | 20.0% |
| !!! | TGCTTTTTGCATTTTATTAA+AGG | - | chr2_3:11765999-11766018 | Msa0278690:intron | 20.0% |
| ! | GAATTGAAAATGATAGAAGA+AGG | + | chr2_3:11761205-11761224 | None:intergenic | 25.0% |
| !! | ATTTTCAATTCACAACACTA+AGG | - | chr2_3:11761214-11761233 | Msa0278690:intron | 25.0% |
| !! | TCTTTTTAGATTTTCCTTTC+TGG | - | chr2_3:11761336-11761355 | Msa0278690:CDS | 25.0% |
| !! | CTTTTTAGATTTTCCTTTCT+GGG | - | chr2_3:11761337-11761356 | Msa0278690:CDS | 25.0% |
| ! | GTTGAAAAGGAAATTGAAAA+GGG | - | chr2_3:11761430-11761449 | Msa0278690:intron | 25.0% |
| ! | TTGAAAAGGAAATTGAAAAG+GGG | - | chr2_3:11761431-11761450 | Msa0278690:intron | 25.0% |
| ! | CAAAATAGAAAATTGAGAAG+GGG | + | chr2_3:11761499-11761518 | None:intergenic | 25.0% |
| ! | CCAAAATAGAAAATTGAGAA+GGG | + | chr2_3:11761500-11761519 | None:intergenic | 25.0% |
| !! | CCTTCTCAATTTTCTATTTT+GGG | - | chr2_3:11761498-11761517 | Msa0278690:intron | 25.0% |
| !!! | ATGGTTATGCTTATTGATTT+TGG | - | chr2_3:11761603-11761622 | Msa0278690:intron | 25.0% |
| !!! | CTTATTGATTTTGGATATGA+TGG | - | chr2_3:11761612-11761631 | Msa0278690:intron | 25.0% |
| !!! | CAATTCTAAATTTTCAAGCA+AGG | + | chr2_3:11761696-11761715 | None:intergenic | 25.0% |
| !!! | GAATTTTGACAGAACTTAAA+TGG | - | chr2_3:11761902-11761921 | Msa0278690:intron | 25.0% |
| ! | GCATACATTCAAATTGTATA+AGG | + | chr2_3:11762005-11762024 | None:intergenic | 25.0% |
| !!! | TTTGTTCCTTTCTTTGATTT+TGG | - | chr2_3:11762190-11762209 | Msa0278690:intron | 25.0% |
| ! | AGATTTCCAAAATCAAAGAA+AGG | + | chr2_3:11762199-11762218 | None:intergenic | 25.0% |
| !! | AACTAATATCTAGGACAAAA+TGG | + | chr2_3:11762380-11762399 | None:intergenic | 25.0% |
| !!! | GTTTTTTTGTTTCTAGTTGT+AGG | - | chr2_3:11762409-11762428 | Msa0278690:intron | 25.0% |
| ! | TATTTACAGGAAAATCTCTT+AGG | - | chr2_3:11762721-11762740 | Msa0278690:intron | 25.0% |
| ! | ATTTGAAGAAGTAATTCTTC+TGG | + | chr2_3:11762814-11762833 | None:intergenic | 25.0% |
| ! | AGAATTACTTCTTCAAATCA+TGG | - | chr2_3:11762816-11762835 | Msa0278690:intron | 25.0% |
| ! | CTGATAGAATTATTGTAAAC+AGG | - | chr2_3:11762885-11762904 | Msa0278690:intron | 25.0% |
| ! | TGTAAACTCCTAATACATTT+AGG | - | chr2_3:11762935-11762954 | Msa0278690:intron | 25.0% |
| ! | GTAAACTCCTAATACATTTA+GGG | - | chr2_3:11762936-11762955 | Msa0278690:intron | 25.0% |
| ! | ATCTTTAAACAACATTCTCT+AGG | - | chr2_3:11763196-11763215 | Msa0278690:intron | 25.0% |
| !! | ATTACATTTTGCACGTTTTT+GGG | + | chr2_3:11763334-11763353 | None:intergenic | 25.0% |
| !! | TATTACATTTTGCACGTTTT+TGG | + | chr2_3:11763335-11763354 | None:intergenic | 25.0% |
| !! | TTTGTTTGATAACTAACTTC+AGG | + | chr2_3:11763365-11763384 | None:intergenic | 25.0% |
| ! | GTTATGTCATTGAAGAAAAT+TGG | - | chr2_3:11763750-11763769 | Msa0278690:intron | 25.0% |
| !! | TTTTTAAATGAGTTAGCTGT+TGG | - | chr2_3:11763820-11763839 | Msa0278690:intron | 25.0% |
| ! | AAAGAACTCAAAAATGTATC+AGG | + | chr2_3:11764083-11764102 | None:intergenic | 25.0% |
| !!! | TTAAATTTGTTAAGGTGCAT+GGG | + | chr2_3:11764464-11764483 | None:intergenic | 25.0% |
| !!! | ATTAAATTTGTTAAGGTGCA+TGG | + | chr2_3:11764465-11764484 | None:intergenic | 25.0% |
| ! | TTGTTATGAAATCAAAATGG+AGG | - | chr2_3:11764619-11764638 | Msa0278690:intron | 25.0% |
| !! | TATTTTCAGTTTGCATTTGT+CGG | - | chr2_3:11764955-11764974 | Msa0278690:intron | 25.0% |
| !!! | CTTATCATTTTTCAATTGCT+AGG | + | chr2_3:11765007-11765026 | None:intergenic | 25.0% |
| ! | CATAAAAAACAACAGAAATG+TGG | + | chr2_3:11765928-11765947 | None:intergenic | 25.0% |
| !!! | GCTGTTGATTTTTTGTAATT+CGG | - | chr2_3:11766143-11766162 | Msa0278690:intron | 25.0% |
| ! | AATCAGAAAAGAAAGTTACA+CGG | - | chr2_3:11766358-11766377 | Msa0278690:five_prime_UTR | 25.0% |
| !! | ATTGAAGTGTTGTTGAGTTT+GGG | + | chr2_3:11761173-11761192 | None:intergenic | 30.0% |
| !! | AATTGAAGTGTTGTTGAGTT+TGG | + | chr2_3:11761174-11761193 | None:intergenic | 30.0% |
| TAACTGCTATAAACTGTAAC+TGG | - | chr2_3:11761280-11761299 | Msa0278690:intron | 30.0% | |
| GGTTGAAAAGGAAATTGAAA+AGG | - | chr2_3:11761429-11761448 | Msa0278690:intron | 30.0% | |
| ! | CCCTTCTCAATTTTCTATTT+TGG | - | chr2_3:11761497-11761516 | Msa0278690:intron | 30.0% |
| CCCAAAATAGAAAATTGAGA+AGG | + | chr2_3:11761501-11761520 | None:intergenic | 30.0% | |
| !!! | TTTCATGGTTTTTGAGTGAA+AGG | - | chr2_3:11761529-11761548 | Msa0278690:intron | 30.0% |
| CTATGGATAAAATTCACACT+TGG | + | chr2_3:11761673-11761692 | None:intergenic | 30.0% | |
| !! | TAAATTTTCAAGCAAGGCTA+TGG | + | chr2_3:11761690-11761709 | None:intergenic | 30.0% |
| AACAAGTGTCAAATAGTCTA+TGG | + | chr2_3:11761780-11761799 | None:intergenic | 30.0% | |
| ! | TTTTCCTTTACTCGTTTTGT+TGG | - | chr2_3:11761874-11761893 | Msa0278690:intron | 30.0% |
| !! | ACAGAACTTAAATGGATTGA+TGG | - | chr2_3:11761910-11761929 | Msa0278690:intron | 30.0% |
| TAATTATGCCATGGATCATA+TGG | + | chr2_3:11761973-11761992 | None:intergenic | 30.0% | |
| ATCCATGGCATAATTAATAG+AGG | - | chr2_3:11761977-11761996 | Msa0278690:intron | 30.0% | |
| TCCATGGCATAATTAATAGA+GGG | - | chr2_3:11761978-11761997 | Msa0278690:intron | 30.0% | |
| TGATAACAATCCTAAGAACT+TGG | - | chr2_3:11762280-11762299 | Msa0278690:intron | 30.0% | |
| AAGAGACAGAACTAATATCT+AGG | + | chr2_3:11762389-11762408 | None:intergenic | 30.0% | |
| ! | TTTTCTTCATTTCCTTTTCC+CGG | - | chr2_3:11762572-11762591 | Msa0278690:intron | 30.0% |
| ! | ATTTTCCTGTAAATACCTGT+GGG | + | chr2_3:11762716-11762735 | None:intergenic | 30.0% |
| !!! | GGCATTTTTATTTTCTGATG+TGG | - | chr2_3:11762742-11762761 | Msa0278690:intron | 30.0% |
| !! | TTTTGAGAGCTTATGAAAAC+CGG | - | chr2_3:11763004-11763023 | Msa0278690:intron | 30.0% |
| AATAAGCAGAAAACAGCTAA+TGG | + | chr2_3:11763041-11763060 | None:intergenic | 30.0% | |
| ATTGTCTTCATAAGCTATCT+TGG | + | chr2_3:11763076-11763095 | None:intergenic | 30.0% | |
| ACATAAAACTTCAGATAGCA+TGG | + | chr2_3:11763270-11763289 | None:intergenic | 30.0% | |
| ! | TTACATTTTGCACGTTTTTG+GGG | + | chr2_3:11763333-11763352 | None:intergenic | 30.0% |
| TGATAACAATCTAAGAACCT+GGG | - | chr2_3:11763860-11763879 | Msa0278690:intron | 30.0% | |
| !!! | AGTTTTTTGAAGGTTTTGGA+GGG | + | chr2_3:11764057-11764076 | None:intergenic | 30.0% |
| !!! | AAGTTTTTTGAAGGTTTTGG+AGG | + | chr2_3:11764058-11764077 | None:intergenic | 30.0% |
| !!! | GAGAAGTTTTTTGAAGGTTT+TGG | + | chr2_3:11764061-11764080 | None:intergenic | 30.0% |
| !!! | TATCAGGAGAAGTTTTTTGA+AGG | + | chr2_3:11764067-11764086 | None:intergenic | 30.0% |
| AAGGAAAAAAACTCACATGT+TGG | - | chr2_3:11764128-11764147 | Msa0278690:intron | 30.0% | |
| AGGAAAAAAACTCACATGTT+GGG | - | chr2_3:11764129-11764148 | Msa0278690:intron | 30.0% | |
| ! | TTAACTTTTAGGCTTTGCTT+GGG | + | chr2_3:11764223-11764242 | None:intergenic | 30.0% |
| AGCCTAAAAGTTAACTATTG+AGG | - | chr2_3:11764229-11764248 | Msa0278690:intron | 30.0% | |
| GCCTAAAAGTTAACTATTGA+GGG | - | chr2_3:11764230-11764249 | Msa0278690:intron | 30.0% | |
| CCTAAAAGTTAACTATTGAG+GGG | - | chr2_3:11764231-11764250 | Msa0278690:intron | 30.0% | |
| CTAAAAGTTAACTATTGAGG+GGG | - | chr2_3:11764232-11764251 | Msa0278690:intron | 30.0% | |
| TCTTAATCAATTACTACCTC+CGG | - | chr2_3:11764492-11764511 | Msa0278690:intron | 30.0% | |
| TTTCTTATAAAAAGAACCGG+AGG | + | chr2_3:11764511-11764530 | None:intergenic | 30.0% | |
| TATGCAATTACACGTGTTAT+TGG | - | chr2_3:11764594-11764613 | Msa0278690:intron | 30.0% | |
| GCGTTGTTATGAAATCAAAA+TGG | - | chr2_3:11764616-11764635 | Msa0278690:intron | 30.0% | |
| GCTTCCTAATACCATAAAAA+AGG | - | chr2_3:11764829-11764848 | Msa0278690:intron | 30.0% | |
| !!! | CTCTCCTTTTTTATGGTATT+AGG | + | chr2_3:11764836-11764855 | None:intergenic | 30.0% |
| !!! | TACTCTTCTCTCCTTTTTTA+TGG | + | chr2_3:11764843-11764862 | None:intergenic | 30.0% |
| ! | ATTTTCAGTTTGCATTTGTC+GGG | - | chr2_3:11764956-11764975 | Msa0278690:intron | 30.0% |
| ATTCTGAATTTCTCAGAAGA+TGG | - | chr2_3:11765363-11765382 | Msa0278690:intron | 30.0% | |
| !!! | AGGATTTTTTCAAGTGGTTT+TGG | - | chr2_3:11765582-11765601 | Msa0278690:intron | 30.0% |
| ! | TGTTTTTCTTTTCAGCACTT+AGG | - | chr2_3:11765609-11765628 | Msa0278690:intron | 30.0% |
| ATTGCAAACTGTATGAAGTT+CGG | - | chr2_3:11765672-11765691 | Msa0278690:intron | 30.0% | |
| AATGTCATAGAACTAAGAAG+TGG | - | chr2_3:11765843-11765862 | Msa0278690:intron | 30.0% | |
| AAGAAATTAGAACGAACCAT+TGG | + | chr2_3:11766123-11766142 | None:intergenic | 30.0% | |
| !!! | GTTGATTTTTTGTAATTCGG+TGG | - | chr2_3:11766146-11766165 | Msa0278690:intron | 30.0% |
| AATTCCCATTAACTGAAGAT+TGG | + | chr2_3:11766229-11766248 | None:intergenic | 30.0% | |
| AAAAGAAAGTTACACGGAAT+CGG | - | chr2_3:11766364-11766383 | Msa0278690:five_prime_UTR | 30.0% | |
| ! | TGTGTGTTTTGTGTTGTAGT+TGG | + | chr2_3:11761088-11761107 | None:intergenic | 35.0% |
| AAATTGAGCAAAACCCAGAA+AGG | + | chr2_3:11761353-11761372 | None:intergenic | 35.0% | |
| ! | TGGGTTTTGCTCAATTTTTC+TGG | - | chr2_3:11761356-11761375 | Msa0278690:CDS | 35.0% |
| ! | GGGTTTTGCTCAATTTTTCT+GGG | - | chr2_3:11761357-11761376 | Msa0278690:CDS | 35.0% |
| !! | GCTTGAAAATTGGGTTGAAA+AGG | - | chr2_3:11761417-11761436 | Msa0278690:intron | 35.0% |
| CAATCCAACAAAACGAGTAA+AGG | + | chr2_3:11761881-11761900 | None:intergenic | 35.0% | |
| ! | GGATCATATGGATTTTGGAT+TGG | + | chr2_3:11761961-11761980 | None:intergenic | 35.0% |
| TCCAAAATCCATATGATCCA+TGG | - | chr2_3:11761962-11761981 | Msa0278690:intron | 35.0% | |
| ! | ACTTATGCTGTCTCTTTTAG+TGG | - | chr2_3:11762047-11762066 | Msa0278690:intron | 35.0% |
| ATACAAATATGTGTGCTGCA+TGG | - | chr2_3:11762156-11762175 | Msa0278690:intron | 35.0% | |
| TACAAATATGTGTGCTGCAT+GGG | - | chr2_3:11762157-11762176 | Msa0278690:intron | 35.0% | |
| AGAAAGGAACAAAAGCCAAA+GGG | + | chr2_3:11762183-11762202 | None:intergenic | 35.0% | |
| AAGAAAGGAACAAAAGCCAA+AGG | + | chr2_3:11762184-11762203 | None:intergenic | 35.0% | |
| GACAAAATCACCAAGTTCTT+AGG | + | chr2_3:11762293-11762312 | None:intergenic | 35.0% | |
| TGCATCATTATAATCCTGCA+TGG | - | chr2_3:11762332-11762351 | Msa0278690:intron | 35.0% | |
| AGCAGAACAAACACTGTTAA+CGG | + | chr2_3:11762635-11762654 | None:intergenic | 35.0% | |
| ! | GATTTTCCTGTAAATACCTG+TGG | + | chr2_3:11762717-11762736 | None:intergenic | 35.0% |
| CTTCTTCAAATCATGGTTGT+CGG | - | chr2_3:11762823-11762842 | Msa0278690:intron | 35.0% | |
| AAACAGGCCCTAAATGTATT+AGG | + | chr2_3:11762946-11762965 | None:intergenic | 35.0% | |
| ! | TAATACATTTAGGGCCTGTT+TGG | - | chr2_3:11762945-11762964 | Msa0278690:intron | 35.0% |
| TCAAACAAGTCAATCCAAAC+AGG | + | chr2_3:11762962-11762981 | None:intergenic | 35.0% | |
| AAATTGTTGTCCAGATAACG+AGG | - | chr2_3:11763382-11763401 | Msa0278690:intron | 35.0% | |
| GAAATTCCGTTTGCAGATAT+AGG | + | chr2_3:11763443-11763462 | None:intergenic | 35.0% | |
| GTGATAACAATCTAAGAACC+TGG | - | chr2_3:11763859-11763878 | Msa0278690:intron | 35.0% | |
| GATAACAATCTAAGAACCTG+GGG | - | chr2_3:11763861-11763880 | Msa0278690:intron | 35.0% | |
| GGAAAAAAACTCACATGTTG+GGG | - | chr2_3:11764130-11764149 | Msa0278690:intron | 35.0% | |
| GAAAAAAACTCACATGTTGG+GGG | - | chr2_3:11764131-11764150 | Msa0278690:intron | 35.0% | |
| ACTTCAGGAGAAATGAAGAA+GGG | + | chr2_3:11764180-11764199 | None:intergenic | 35.0% | |
| ! | GTTAACTTTTAGGCTTTGCT+TGG | + | chr2_3:11764224-11764243 | None:intergenic | 35.0% |
| ! | CCCCTCAATAGTTAACTTTT+AGG | + | chr2_3:11764234-11764253 | None:intergenic | 35.0% |
| GGAAGAACCAAACAACTTAA+TGG | - | chr2_3:11764253-11764272 | Msa0278690:intron | 35.0% | |
| AGTAGAGTCTTGGGTATTAT+GGG | + | chr2_3:11764322-11764341 | None:intergenic | 35.0% | |
| TAGTAGAGTCTTGGGTATTA+TGG | + | chr2_3:11764323-11764342 | None:intergenic | 35.0% | |
| TCAAAGCAAAAGCAGGAATT+TGG | + | chr2_3:11764785-11764804 | None:intergenic | 35.0% | |
| GAAAAATGATAAGCCGTTTG+AGG | - | chr2_3:11765014-11765033 | Msa0278690:intron | 35.0% | |
| GTATAGAACCATTCCTCAAA+CGG | + | chr2_3:11765030-11765049 | None:intergenic | 35.0% | |
| AACATGTTCATGTTGGATCA+TGG | - | chr2_3:11765140-11765159 | Msa0278690:intron | 35.0% | |
| AATCCTAGCATCAAGTAACA+TGG | + | chr2_3:11765568-11765587 | None:intergenic | 35.0% | |
| !!! | GATGCTAGGATTTTTTCAAG+TGG | - | chr2_3:11765576-11765595 | Msa0278690:intron | 35.0% |
| GATTAAATTACCCTAGTTCC+TGG | - | chr2_3:11765886-11765905 | Msa0278690:intron | 35.0% | |
| CAACAAATTTCCAGGAACTA+GGG | + | chr2_3:11765899-11765918 | None:intergenic | 35.0% | |
| ACAACAAATTTCCAGGAACT+AGG | + | chr2_3:11765900-11765919 | None:intergenic | 35.0% | |
| GGCAAAAACAACAAATTTCC+AGG | + | chr2_3:11765907-11765926 | None:intergenic | 35.0% | |
| !! | TGTTTTGCATTGACAAACAC+AGG | + | chr2_3:11766294-11766313 | None:intergenic | 35.0% |
| GTCAATGCAAAACAGTATCA+TGG | - | chr2_3:11766300-11766319 | Msa0278690:five_prime_UTR | 35.0% | |
| !!! | ATCATGGTATTTTAAGACGC+AGG | - | chr2_3:11766316-11766335 | Msa0278690:five_prime_UTR | 35.0% |
| ! | GCCATGGATCATATGGATTT+TGG | + | chr2_3:11761966-11761985 | None:intergenic | 40.0% |
| GCCCTCTATTAATTATGCCA+TGG | + | chr2_3:11761982-11762001 | None:intergenic | 40.0% | |
| TTGGAAATCTGAACTTGAGC+TGG | - | chr2_3:11762209-11762228 | Msa0278690:intron | 40.0% | |
| !! | ACGACTGCGCTCTAAAAATT+TGG | + | chr2_3:11762444-11762463 | None:intergenic | 40.0% |
| CATGACATTGCAGTGAATCA+TGG | - | chr2_3:11762473-11762492 | Msa0278690:intron | 40.0% | |
| ATAGAACAGAATCCGGGAAA+AGG | + | chr2_3:11762587-11762606 | None:intergenic | 40.0% | |
| GTTTGTTCTGCTTCCAGATT+TGG | - | chr2_3:11762643-11762662 | Msa0278690:intron | 40.0% | |
| ATCATGTGTGGAAGAAGTCA+TGG | + | chr2_3:11762693-11762712 | None:intergenic | 40.0% | |
| ATGATCCCACAGGTATTTAC+AGG | - | chr2_3:11762708-11762727 | Msa0278690:intron | 40.0% | |
| ! | GCTAATGGACAAGTCATAAC+CGG | + | chr2_3:11763026-11763045 | None:intergenic | 40.0% |
| !! | ATAGGACTAGTCAAAGGCAT+CGG | + | chr2_3:11763303-11763322 | None:intergenic | 40.0% |
| ATGCAGCCTATATCTGCAAA+CGG | - | chr2_3:11763434-11763453 | Msa0278690:intron | 40.0% | |
| AACCTGAGCATTATCAACAC+CGG | + | chr2_3:11763471-11763490 | None:intergenic | 40.0% | |
| !! | CTTCACTTGTTTGCTATCCT+TGG | - | chr2_3:11763594-11763613 | Msa0278690:intron | 40.0% |
| ! | TCCTCCATTAAGGGTTTGTT+TGG | - | chr2_3:11763886-11763905 | Msa0278690:intron | 40.0% |
| ! | CCTCCATTAAGGGTTTGTTT+GGG | - | chr2_3:11763887-11763906 | Msa0278690:intron | 40.0% |
| ACTCCCAAACAAACCCTTAA+TGG | + | chr2_3:11763893-11763912 | None:intergenic | 40.0% | |
| ! | GGTTTGTTTGGGAGTTAGAA+GGG | - | chr2_3:11763898-11763917 | Msa0278690:intron | 40.0% |
| AAGGGAAAGAACTTGGAGAA+TGG | - | chr2_3:11763925-11763944 | Msa0278690:CDS | 40.0% | |
| AAAGAACTTGGAGAATGGAG+AGG | - | chr2_3:11763930-11763949 | Msa0278690:CDS | 40.0% | |
| AATGAAGAAGGGAAGGAAAG+TGG | + | chr2_3:11764169-11764188 | None:intergenic | 40.0% | |
| GACTTCAGGAGAAATGAAGA+AGG | + | chr2_3:11764181-11764200 | None:intergenic | 40.0% | |
| ! | GGTGAAGCCATTAAGTTGTT+TGG | + | chr2_3:11764263-11764282 | None:intergenic | 40.0% |
| TTCAACGTCAAAGCAAAAGC+AGG | + | chr2_3:11764792-11764811 | None:intergenic | 40.0% | |
| ! | TGCTTTTGCTTTGACGTTGA+AGG | - | chr2_3:11764791-11764810 | Msa0278690:intron | 40.0% |
| TGACGTTGAAGGCAATCATA+AGG | - | chr2_3:11764802-11764821 | Msa0278690:intron | 40.0% | |
| GACGTTGAAGGCAATCATAA+GGG | - | chr2_3:11764803-11764822 | Msa0278690:intron | 40.0% | |
| ATGATAAGCCGTTTGAGGAA+TGG | - | chr2_3:11765019-11765038 | Msa0278690:intron | 40.0% | |
| GTAAGGCAACATGTTCATGT+TGG | - | chr2_3:11765133-11765152 | Msa0278690:intron | 40.0% | |
| TTCAGTCCTCGATAGCAAAA+TGG | + | chr2_3:11765208-11765227 | None:intergenic | 40.0% | |
| GAATTTCTCAGAAGATGGCT+TGG | - | chr2_3:11765368-11765387 | Msa0278690:intron | 40.0% | |
| ! | GTAATGAGCGTGTCATGTTT+TGG | - | chr2_3:11765396-11765415 | Msa0278690:intron | 40.0% |
| ! | GAACCATGTTACTTGATGCT+AGG | - | chr2_3:11765562-11765581 | Msa0278690:intron | 40.0% |
| CATTACTTAGAGGTAGCGAT+TGG | - | chr2_3:11765706-11765725 | Msa0278690:intron | 40.0% | |
| GCAAAGATGCTTCTGTAGTA+GGG | + | chr2_3:11766054-11766073 | None:intergenic | 40.0% | |
| AGCAAAGATGCTTCTGTAGT+AGG | + | chr2_3:11766055-11766074 | None:intergenic | 40.0% | |
| GGATAAGGTTGTGCATCATA+GGG | + | chr2_3:11766078-11766097 | None:intergenic | 40.0% | |
| ATTGAACCATATTCTGTGCC+AGG | - | chr2_3:11766203-11766222 | Msa0278690:intron | 40.0% | |
| CAGGCCAATCTTCAGTTAAT+GGG | - | chr2_3:11766222-11766241 | Msa0278690:five_prime_UTR | 40.0% | |
| TTAATGGGAATTCAGCATGC+AGG | - | chr2_3:11766237-11766256 | Msa0278690:five_prime_UTR | 40.0% | |
| ! | TGTTGTTGAGTTTGGGACAG+TGG | + | chr2_3:11761166-11761185 | None:intergenic | 45.0% |
| ! | TATTGCAGCTAAGAGAGCAC+AGG | + | chr2_3:11762079-11762098 | None:intergenic | 45.0% |
| !! | ATGGCTCTATCTGCCTTTTG+TGG | - | chr2_3:11762351-11762370 | Msa0278690:intron | 45.0% |
| !! | TGGCTCTATCTGCCTTTTGT+GGG | - | chr2_3:11762352-11762371 | Msa0278690:intron | 45.0% |
| GACAAAATGGAGCCCACAAA+AGG | + | chr2_3:11762367-11762386 | None:intergenic | 45.0% | |
| TCCCGGATTCTGTTCTATGA+CGG | - | chr2_3:11762589-11762608 | Msa0278690:intron | 45.0% | |
| TCCGTCATAGAACAGAATCC+GGG | + | chr2_3:11762593-11762612 | None:intergenic | 45.0% | |
| CTCCGTCATAGAACAGAATC+CGG | + | chr2_3:11762594-11762613 | None:intergenic | 45.0% | |
| ACATGCACTCTGTCCAAATC+TGG | + | chr2_3:11762659-11762678 | None:intergenic | 45.0% | |
| AATACCTGTGGGATCATGTG+TGG | + | chr2_3:11762705-11762724 | None:intergenic | 45.0% | |
| !! | CAGGGAATAGGACTAGTCAA+AGG | + | chr2_3:11763309-11763328 | None:intergenic | 45.0% |
| ! | CTTTGACTAGTCCTATTCCC+TGG | - | chr2_3:11763307-11763326 | Msa0278690:intron | 45.0% |
| ! | GCTATCCTTGGCTCTCTTAT+TGG | - | chr2_3:11763606-11763625 | Msa0278690:intron | 45.0% |
| CACTTCCAATAAGAGAGCCA+AGG | + | chr2_3:11763614-11763633 | None:intergenic | 45.0% | |
| ! | CTTGGCTCTCTTATTGGAAG+TGG | - | chr2_3:11763612-11763631 | Msa0278690:intron | 45.0% |
| CTGTGATAGCTACAACGAGA+CGG | + | chr2_3:11763710-11763729 | None:intergenic | 45.0% | |
| GCTATCACAGATGCACATTG+TGG | - | chr2_3:11763720-11763739 | Msa0278690:intron | 45.0% | |
| CCCAAACAAACCCTTAATGG+AGG | + | chr2_3:11763890-11763909 | None:intergenic | 45.0% | |
| ! | GGGTTTGTTTGGGAGTTAGA+AGG | - | chr2_3:11763897-11763916 | Msa0278690:intron | 45.0% |
| TGGGAGTTAGAAGGGAGAAA+AGG | - | chr2_3:11763906-11763925 | Msa0278690:intron | 45.0% | |
| GGGAGTTAGAAGGGAGAAAA+GGG | - | chr2_3:11763907-11763926 | Msa0278690:intron | 45.0% | |
| GGGAGAAAAGGGAAAGAACT+TGG | - | chr2_3:11763918-11763937 | Msa0278690:CDS | 45.0% | |
| AGAAGGGAAGGAAAGTGGAA+GGG | + | chr2_3:11764164-11764183 | None:intergenic | 45.0% | |
| AAGAAGGGAAGGAAAGTGGA+AGG | + | chr2_3:11764165-11764184 | None:intergenic | 45.0% | |
| CAGGAGAAATGAAGAAGGGA+AGG | + | chr2_3:11764176-11764195 | None:intergenic | 45.0% | |
| CTTGGGAGTAATGAGGGAAA+GGG | + | chr2_3:11764206-11764225 | None:intergenic | 45.0% | |
| GCTTTGCTTGGGAGTAATGA+GGG | + | chr2_3:11764212-11764231 | None:intergenic | 45.0% | |
| ! | ATCGAGAAGCATGAGATGCT+CGG | + | chr2_3:11764284-11764303 | None:intergenic | 45.0% |
| CATCTCATGCTTCTCGATGT+GGG | - | chr2_3:11764286-11764305 | Msa0278690:intron | 45.0% | |
| TGTTGCAGTTGGGAGATCAA+TGG | + | chr2_3:11764739-11764758 | None:intergenic | 45.0% | |
| GCTTTCACAGTGTTGCAGTT+GGG | + | chr2_3:11764749-11764768 | None:intergenic | 45.0% | |
| AGCTTTCACAGTGTTGCAGT+TGG | + | chr2_3:11764750-11764769 | None:intergenic | 45.0% | |
| AAAAGCAGGAATTTGGCTGC+AGG | + | chr2_3:11764778-11764797 | None:intergenic | 45.0% | |
| AGATTGGAGGGAACCAAGAT+GGG | + | chr2_3:11764886-11764905 | None:intergenic | 45.0% | |
| GCAAACATGTTGTGAAGCTG+CGG | + | chr2_3:11764909-11764928 | None:intergenic | 45.0% | |
| GTTCTGCATTGCCAAACAGT+AGG | - | chr2_3:11765062-11765081 | Msa0278690:intron | 45.0% | |
| ATGTTGGATCATGGTCGTTC+TGG | - | chr2_3:11765149-11765168 | Msa0278690:intron | 45.0% | |
| TCTCAATGCAAAACGACAGC+AGG | + | chr2_3:11765180-11765199 | None:intergenic | 45.0% | |
| !! | AACACGCCATTTTGCTATCG+AGG | - | chr2_3:11765199-11765218 | Msa0278690:intron | 45.0% |
| !! | GTAGTCTTGTGGTGACTCTA+TGG | - | chr2_3:11765274-11765293 | Msa0278690:intron | 45.0% |
| ACCACCTGCTTATCCATATC+CGG | - | chr2_3:11766026-11766045 | Msa0278690:intron | 45.0% | |
| ATGCTTCTGTAGTAGGGATC+CGG | + | chr2_3:11766048-11766067 | None:intergenic | 45.0% | |
| CGGATAAGGTTGTGCATCAT+AGG | + | chr2_3:11766079-11766098 | None:intergenic | 45.0% | |
| ! | CCATTAACTGAAGATTGGCC+TGG | + | chr2_3:11766224-11766243 | None:intergenic | 45.0% |
| CCAGGCCAATCTTCAGTTAA+TGG | - | chr2_3:11766221-11766240 | Msa0278690:five_prime_UTR | 45.0% | |
| TCAACTGCATCAGTTGGCAA+AGG | + | chr2_3:11766267-11766286 | None:intergenic | 45.0% | |
| TTTGCCAACTGATGCAGTTG+AGG | - | chr2_3:11766266-11766285 | Msa0278690:five_prime_UTR | 45.0% | |
| !!! | TTATTTTTATTTTAACTTTT+TGG | - | chr2_3:11763981-11764000 | Msa0278690:CDS | 5.0% |
| ATCCCTTGCACTTGTGCTCA+GGG | - | chr2_3:11762243-11762262 | Msa0278690:intron | 50.0% | |
| TTCCCTGAGCACAAGTGCAA+GGG | + | chr2_3:11762248-11762267 | None:intergenic | 50.0% | |
| AAAGGCAGATAGAGCCATGC+AGG | + | chr2_3:11762349-11762368 | None:intergenic | 50.0% | |
| GGACAGAGTGCATGTGAATC+AGG | - | chr2_3:11762664-11762683 | Msa0278690:intron | 50.0% | |
| TCTTCCACACATGATCCCAC+AGG | - | chr2_3:11762698-11762717 | Msa0278690:intron | 50.0% | |
| !!! | TTTGCACGTTTTTGGGGCCA+GGG | + | chr2_3:11763327-11763346 | None:intergenic | 50.0% |
| !!! | TTTTGCACGTTTTTGGGGCC+AGG | + | chr2_3:11763328-11763347 | None:intergenic | 50.0% |
| TGTCCAGATAACGAGGCTGA+TGG | - | chr2_3:11763389-11763408 | Msa0278690:intron | 50.0% | |
| TGTCCATCAGCCTCGTTATC+TGG | + | chr2_3:11763395-11763414 | None:intergenic | 50.0% | |
| GCAAACGGAATTTCTCACGC+CGG | - | chr2_3:11763449-11763468 | Msa0278690:intron | 50.0% | |
| GATAGCTACAACGAGACGGA+GGG | + | chr2_3:11763706-11763725 | None:intergenic | 50.0% | |
| TGATAGCTACAACGAGACGG+AGG | + | chr2_3:11763707-11763726 | None:intergenic | 50.0% | |
| ACCTGGGGAATCCTCCATTA+AGG | - | chr2_3:11763876-11763895 | Msa0278690:intron | 50.0% | |
| CCTGGGGAATCCTCCATTAA+GGG | - | chr2_3:11763877-11763896 | Msa0278690:intron | 50.0% | |
| CTTGGAGAATGGAGAGGAGA+CGG | - | chr2_3:11763936-11763955 | Msa0278690:CDS | 50.0% | |
| TGAGGGAAAGGGAAGACTTC+AGG | + | chr2_3:11764195-11764214 | None:intergenic | 50.0% | |
| GCTTGGGAGTAATGAGGGAA+AGG | + | chr2_3:11764207-11764226 | None:intergenic | 50.0% | |
| GGCTTTGCTTGGGAGTAATG+AGG | + | chr2_3:11764213-11764232 | None:intergenic | 50.0% | |
| GCATCTCATGCTTCTCGATG+TGG | - | chr2_3:11764285-11764304 | Msa0278690:intron | 50.0% | |
| TGCTTCTCGATGTGGGACAT+AGG | - | chr2_3:11764293-11764312 | Msa0278690:intron | 50.0% | |
| GGGAAGACAGCAGTGTTACA+CGG | + | chr2_3:11764685-11764704 | None:intergenic | 50.0% | |
| GAGATCAATGGATGGTGAGG+GGG | + | chr2_3:11764727-11764746 | None:intergenic | 50.0% | |
| GGAGATCAATGGATGGTGAG+GGG | + | chr2_3:11764728-11764747 | None:intergenic | 50.0% | |
| GGGAGATCAATGGATGGTGA+GGG | + | chr2_3:11764729-11764748 | None:intergenic | 50.0% | |
| TGGGAGATCAATGGATGGTG+AGG | + | chr2_3:11764730-11764749 | None:intergenic | 50.0% | |
| GCAGTTGGGAGATCAATGGA+TGG | + | chr2_3:11764735-11764754 | None:intergenic | 50.0% | |
| CAAGATGGGAGGATGAGGAA+AGG | + | chr2_3:11764872-11764891 | None:intergenic | 50.0% | |
| CTTTCCTCATCCTCCCATCT+TGG | - | chr2_3:11764870-11764889 | Msa0278690:intron | 50.0% | |
| GAGATTGGAGGGAACCAAGA+TGG | + | chr2_3:11764887-11764906 | None:intergenic | 50.0% | |
| TGTTGTGAAGCTGCGGAGAT+TGG | + | chr2_3:11764902-11764921 | None:intergenic | 50.0% | |
| GCGATTCTCTGCCTACTGTT+TGG | + | chr2_3:11765076-11765095 | None:intergenic | 50.0% | |
| GATGCGGTTGCAAGATGGTA+AGG | - | chr2_3:11765116-11765135 | Msa0278690:intron | 50.0% | |
| AAGTGCACCACCTTGTGACA+TGG | - | chr2_3:11765226-11765245 | Msa0278690:intron | 50.0% | |
| CTTGTGACATGGTCCTGTGT+CGG | - | chr2_3:11765237-11765256 | Msa0278690:intron | 50.0% | |
| ! | TGCACACAACGGTAGTCTTG+TGG | - | chr2_3:11765263-11765282 | Msa0278690:intron | 50.0% |
| AAGAAGTGGCTGCTCAGACT+TGG | - | chr2_3:11765857-11765876 | Msa0278690:intron | 50.0% | |
| GGATATGGATAAGCAGGTGG+TGG | + | chr2_3:11766027-11766046 | None:intergenic | 50.0% | |
| TCCGGATATGGATAAGCAGG+TGG | + | chr2_3:11766030-11766049 | None:intergenic | 50.0% | |
| GGATCCGGATATGGATAAGC+AGG | + | chr2_3:11766033-11766052 | None:intergenic | 50.0% | |
| CTGTAGTAGGGATCCGGATA+TGG | + | chr2_3:11766042-11766061 | None:intergenic | 50.0% | |
| ACCATTGGATGTCCACCGTA+GGG | + | chr2_3:11766108-11766127 | None:intergenic | 50.0% | |
| AACCATTGGATGTCCACCGT+AGG | + | chr2_3:11766109-11766128 | None:intergenic | 50.0% | |
| !! | GATTGGCCTGGCACAGAATA+TGG | + | chr2_3:11766212-11766231 | None:intergenic | 50.0% |
| CATCCCTTGCACTTGTGCTC+AGG | - | chr2_3:11762242-11762261 | Msa0278690:intron | 55.0% | |
| GTTCCCTGAGCACAAGTGCA+AGG | + | chr2_3:11762249-11762268 | None:intergenic | 55.0% | |
| !!! | CGTTTTTGGGGCCAGGGAAT+AGG | + | chr2_3:11763321-11763340 | None:intergenic | 55.0% |
| !! | CGCCGGTGTTGATAATGCTC+AGG | - | chr2_3:11763466-11763485 | Msa0278690:intron | 55.0% |
| TATGCAGCACCTCCACAGCT+TGG | - | chr2_3:11763497-11763516 | Msa0278690:intron | 55.0% | |
| CCCTTAATGGAGGATTCCCC+AGG | + | chr2_3:11763880-11763899 | None:intergenic | 55.0% | |
| TGGAGAGGAGACGGAAGAGA+AGG | - | chr2_3:11763945-11763964 | Msa0278690:CDS | 55.0% | |
| GGAACCAAGATGGGAGGATG+AGG | + | chr2_3:11764877-11764896 | None:intergenic | 55.0% | |
| TTGGAGGGAACCAAGATGGG+AGG | + | chr2_3:11764883-11764902 | None:intergenic | 55.0% | |
| GTGAAGCTGCGGAGATTGGA+GGG | + | chr2_3:11764898-11764917 | None:intergenic | 55.0% | |
| TGTGAAGCTGCGGAGATTGG+AGG | + | chr2_3:11764899-11764918 | None:intergenic | 55.0% | |
| ACCAGGTGAACAGAGCGATG+CGG | - | chr2_3:11765100-11765119 | Msa0278690:intron | 55.0% | |
| AGAGCGATGCGGTTGCAAGA+TGG | - | chr2_3:11765111-11765130 | Msa0278690:intron | 55.0% | |
| CACAGGACCATGTCACAAGG+TGG | + | chr2_3:11765236-11765255 | None:intergenic | 55.0% | |
| CGACACAGGACCATGTCACA+AGG | + | chr2_3:11765239-11765258 | None:intergenic | 55.0% | |
| !! | TGTGTCGGTGCTGCACACAA+CGG | - | chr2_3:11765252-11765271 | Msa0278690:intron | 55.0% |
| ACCCTACGGTGGACATCCAA+TGG | - | chr2_3:11766104-11766123 | Msa0278690:intron | 55.0% | |
| GGCTCCTCAACTGCATCAGT+TGG | + | chr2_3:11766273-11766292 | None:intergenic | 55.0% | |
| TGTGTGCTGCATGGGCCCTT+TGG | - | chr2_3:11762165-11762184 | Msa0278690:intron | 60.0% | |
| AGCACCTCCACAGCTTGGCA+CGG | - | chr2_3:11763502-11763521 | Msa0278690:intron | 60.0% | |
| !! | ACGAGACGGAGGGCATCGAA+TGG | + | chr2_3:11763696-11763715 | None:intergenic | 60.0% |
| GACAGAGTGGGGAGGAGGTT+GGG | + | chr2_3:11764705-11764724 | None:intergenic | 60.0% | |
| ATGGTGAGGGGGACAGAGTG+GGG | + | chr2_3:11764716-11764735 | None:intergenic | 60.0% | |
| GATGGTGAGGGGGACAGAGT+GGG | + | chr2_3:11764717-11764736 | None:intergenic | 60.0% | |
| GGCAGAGAATCGCAACGACC+AGG | - | chr2_3:11765083-11765102 | Msa0278690:intron | 60.0% | |
| ACCGCATCGCTCTGTTCACC+TGG | + | chr2_3:11765104-11765123 | None:intergenic | 60.0% | |
| !! | GTTGTGTGCAGCACCGACAC+AGG | + | chr2_3:11765253-11765272 | None:intergenic | 60.0% |
| CCTTATCCGCCGCAACCCTA+CGG | - | chr2_3:11766090-11766109 | Msa0278690:intron | 60.0% | |
| GGATGTCCACCGTAGGGTTG+CGG | + | chr2_3:11766102-11766121 | None:intergenic | 60.0% | |
| GCACCTCCACAGCTTGGCAC+GGG | - | chr2_3:11763503-11763522 | Msa0278690:intron | 65.0% | |
| CACCTCCACAGCTTGGCACG+GGG | - | chr2_3:11763504-11763523 | Msa0278690:intron | 65.0% | |
| GCTTGGCACGGGGCATGCTA+TGG | - | chr2_3:11763514-11763533 | Msa0278690:intron | 65.0% | |
| !! | CGGAGGGCATCGAATGGCTG+TGG | + | chr2_3:11763690-11763709 | None:intergenic | 65.0% |
| GGACAGAGTGGGGAGGAGGT+TGG | + | chr2_3:11764706-11764725 | None:intergenic | 65.0% | |
| GGATGGTGAGGGGGACAGAG+TGG | + | chr2_3:11764718-11764737 | None:intergenic | 65.0% | |
| CCGTAGGGTTGCGGCGGATA+AGG | + | chr2_3:11766093-11766112 | None:intergenic | 65.0% | |
| TATCCGCCGCAACCCTACGG+TGG | - | chr2_3:11766093-11766112 | Msa0278690:intron | 65.0% | |
| TGTCCACCGTAGGGTTGCGG+CGG | + | chr2_3:11766099-11766118 | None:intergenic | 65.0% | |
| TGCCCCGTGCCAAGCTGTGG+AGG | + | chr2_3:11763509-11763528 | None:intergenic | 70.0% | |
| GCATGCCCCGTGCCAAGCTG+TGG | + | chr2_3:11763512-11763531 | None:intergenic | 70.0% | |
| AGGGGGACAGAGTGGGGAGG+AGG | + | chr2_3:11764710-11764729 | None:intergenic | 70.0% | |
| GTGAGGGGGACAGAGTGGGG+AGG | + | chr2_3:11764713-11764732 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 11761057 | 11766389 | 11761057 | ID=Msa0278690;Name=Msa0278690 |
| chr2_3 | mRNA | 11761057 | 11766389 | 11761057 | ID=Msa0278690-mRNA-1;Parent=Msa0278690;Name=Msa0278690-mRNA-1;_AED=0.34;_eAED=0.34;_QI=211|0.5|0.4|1|0.75|0.6|5|0|146 |
| chr2_3 | exon | 11761057 | 11761221 | 11761057 | ID=Msa0278690-mRNA-1:exon:5305;Parent=Msa0278690-mRNA-1 |
| chr2_3 | exon | 11761321 | 11761425 | 11761321 | ID=Msa0278690-mRNA-1:exon:5304;Parent=Msa0278690-mRNA-1 |
| chr2_3 | exon | 11763911 | 11764050 | 11763911 | ID=Msa0278690-mRNA-1:exon:5303;Parent=Msa0278690-mRNA-1 |
| chr2_3 | exon | 11764727 | 11764786 | 11764727 | ID=Msa0278690-mRNA-1:exon:5302;Parent=Msa0278690-mRNA-1 |
| chr2_3 | exon | 11766211 | 11766389 | 11766211 | ID=Msa0278690-mRNA-1:exon:5301;Parent=Msa0278690-mRNA-1 |
| chr2_3 | five_prime_UTR | 11766211 | 11766389 | 11766211 | ID=Msa0278690-mRNA-1:five_prime_utr;Parent=Msa0278690-mRNA-1 |
| chr2_3 | five_prime_UTR | 11764755 | 11764786 | 11764755 | ID=Msa0278690-mRNA-1:five_prime_utr;Parent=Msa0278690-mRNA-1 |
| chr2_3 | CDS | 11764727 | 11764754 | 11764727 | ID=Msa0278690-mRNA-1:cds;Parent=Msa0278690-mRNA-1 |
| chr2_3 | CDS | 11763911 | 11764050 | 11763911 | ID=Msa0278690-mRNA-1:cds;Parent=Msa0278690-mRNA-1 |
| chr2_3 | CDS | 11761321 | 11761425 | 11761321 | ID=Msa0278690-mRNA-1:cds;Parent=Msa0278690-mRNA-1 |
| chr2_3 | CDS | 11761057 | 11761221 | 11761057 | ID=Msa0278690-mRNA-1:cds;Parent=Msa0278690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
