Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257870 | XP_013457632.1 | 90.728 | 151 | 11 | 1 | 1 | 151 | 1 | 148 | 1.54e-91 | 272 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257870 | sp|Q6NLF7|LTPG7_ARATH | 41.060 | 151 | 78 | 5 | 6 | 150 | 5 | 150 | 5.14e-30 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257870 | I3SGW1 | 90.728 | 151 | 11 | 1 | 1 | 151 | 1 | 148 | 7.35e-92 | 272 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038350 | Msa1257870 | 0.813481 | 2.504812e-51 | -8.615850e-47 |
| Msa0086120 | Msa1257870 | -0.823442 | 1.382291e-53 | -8.615850e-47 |
| Msa0612840 | Msa1257870 | 0.831530 | 1.584419e-55 | -8.615850e-47 |
| Msa0616560 | Msa1257870 | 0.870792 | 1.116121e-66 | -8.615850e-47 |
| Msa0617560 | Msa1257870 | 0.840792 | 7.023859e-58 | -8.615850e-47 |
| Msa0640380 | Msa1257870 | -0.829624 | 4.639781e-55 | -8.615850e-47 |
| Msa0655990 | Msa1257870 | 0.872605 | 2.797791e-67 | -8.615850e-47 |
| Msa0678820 | Msa1257870 | -0.811489 | 6.824900e-51 | -8.615850e-47 |
| Msa0688550 | Msa1257870 | -0.812181 | 4.824284e-51 | -8.615850e-47 |
| Msa0697140 | Msa1257870 | -0.801636 | 8.200122e-49 | -8.615850e-47 |
| Msa0699920 | Msa1257870 | 0.867226 | 1.600298e-65 | -8.615850e-47 |
| Msa0715720 | Msa1257870 | -0.803335 | 3.660691e-49 | -8.615850e-47 |
| Msa0719490 | Msa1257870 | 0.871794 | 5.210346e-67 | -8.615850e-47 |
| Msa0722930 | Msa1257870 | -0.849831 | 2.511567e-60 | -8.615850e-47 |
| Msa0723140 | Msa1257870 | -0.831211 | 1.897876e-55 | -8.615850e-47 |
| Msa0723210 | Msa1257870 | -0.809246 | 2.079944e-50 | -8.615850e-47 |
| Msa0789690 | Msa1257870 | -0.805559 | 1.258880e-49 | -8.615850e-47 |
| Msa0802470 | Msa1257870 | 0.801342 | 9.420630e-49 | -8.615850e-47 |
| Msa0810350 | Msa1257870 | 0.800501 | 1.399391e-48 | -8.615850e-47 |
| Msa0835920 | Msa1257870 | -0.817639 | 2.970542e-52 | -8.615850e-47 |
| Msa0164420 | Msa1257870 | -0.816363 | 5.747766e-52 | -8.615850e-47 |
| Msa0185640 | Msa1257870 | 0.838224 | 3.265141e-57 | -8.615850e-47 |
| Msa0194060 | Msa1257870 | 0.822694 | 2.065804e-53 | -8.615850e-47 |
| Msa0226250 | Msa1257870 | -0.823914 | 1.071663e-53 | -8.615850e-47 |
| Msa1228210 | Msa1257870 | -0.801773 | 7.685712e-49 | -8.615850e-47 |
| Msa1254750 | Msa1257870 | -0.809895 | 1.509150e-50 | -8.615850e-47 |
| Msa1256540 | Msa1257870 | 0.838949 | 2.121178e-57 | -8.615850e-47 |
| Msa1257870 | Msa1271280 | -0.801597 | 8.351125e-49 | -8.615850e-47 |
| Msa1257870 | Msa1271300 | -0.802115 | 6.537803e-49 | -8.615850e-47 |
| Msa1257870 | Msa1289830 | 0.827726 | 1.333894e-54 | -8.615850e-47 |
| Msa1257870 | Msa1295020 | 0.824764 | 6.762900e-54 | -8.615850e-47 |
| Msa1257870 | Msa1296960 | 0.849403 | 3.307137e-60 | -8.615850e-47 |
| Msa1257870 | Msa1303640 | -0.801822 | 7.509884e-49 | -8.615850e-47 |
| Msa1257870 | Msa1327320 | -0.803350 | 3.634652e-49 | -8.615850e-47 |
| Msa1257870 | Msa1330000 | 0.818357 | 2.044372e-52 | -8.615850e-47 |
| Msa1257870 | Msa1347290 | -0.805046 | 1.612486e-49 | -8.615850e-47 |
| Msa1257870 | Msa1363220 | 0.816738 | 4.737856e-52 | -8.615850e-47 |
| Msa1257870 | Msa1371080 | 0.800481 | 1.412685e-48 | -8.615850e-47 |
| Msa1257870 | Msa1412760 | 0.806188 | 9.284569e-50 | -8.615850e-47 |
| Msa1257870 | Msa1444060 | 0.801164 | 1.024293e-48 | -8.615850e-47 |
| Msa0411000 | Msa1257870 | -0.806052 | 9.920872e-50 | -8.615850e-47 |
| Msa0423090 | Msa1257870 | -0.817078 | 3.974154e-52 | -8.615850e-47 |
| Msa0436900 | Msa1257870 | -0.805470 | 1.314493e-49 | -8.615850e-47 |
| Msa0455230 | Msa1257870 | -0.814434 | 1.543799e-51 | -8.615850e-47 |
| Msa0459730 | Msa1257870 | 0.803523 | 3.346652e-49 | -8.615850e-47 |
| Msa0463460 | Msa1257870 | -0.800855 | 1.185074e-48 | -8.615850e-47 |
| Msa0465680 | Msa1257870 | 0.818424 | 1.974413e-52 | -8.615850e-47 |
| Msa0470230 | Msa1257870 | 0.804039 | 2.616052e-49 | -8.615850e-47 |
| Msa0988500 | Msa1257870 | -0.827649 | 1.392107e-54 | -8.615850e-47 |
| Msa1073110 | Msa1257870 | 0.812617 | 3.874741e-51 | -8.615850e-47 |
| Msa1080790 | Msa1257870 | -0.805078 | 1.588239e-49 | -8.615850e-47 |
| Msa1083410 | Msa1257870 | -0.825924 | 3.594628e-54 | -8.615850e-47 |
| Msa1085960 | Msa1257870 | 0.859037 | 5.457543e-63 | -8.615850e-47 |
| Msa1087530 | Msa1257870 | -0.806373 | 8.488039e-50 | -8.615850e-47 |
| Msa0256500 | Msa1257870 | 0.829108 | 6.189755e-55 | -8.615850e-47 |
| Msa0258670 | Msa1257870 | 0.802889 | 4.528809e-49 | -8.615850e-47 |
| Msa0260270 | Msa1257870 | 0.817965 | 2.507565e-52 | -8.615850e-47 |
| Msa0270440 | Msa1257870 | 0.825322 | 4.993006e-54 | -8.615850e-47 |
| Msa0278690 | Msa1257870 | -0.801799 | 7.591769e-49 | -8.615850e-47 |
| Msa0280660 | Msa1257870 | 0.830020 | 3.715015e-55 | -8.615850e-47 |
| Msa0295640 | Msa1257870 | 0.829448 | 5.118519e-55 | -8.615850e-47 |
| Msa0304740 | Msa1257870 | -0.805123 | 1.553842e-49 | -8.615850e-47 |
| Msa0309080 | Msa1257870 | 0.809879 | 1.521444e-50 | -8.615850e-47 |
| Msa0329870 | Msa1257870 | 0.828647 | 8.002653e-55 | -8.615850e-47 |
| Msa0331590 | Msa1257870 | -0.817990 | 2.475540e-52 | -8.615850e-47 |
| Msa0342340 | Msa1257870 | 0.845808 | 3.222424e-59 | -8.615850e-47 |
| Msa0362740 | Msa1257870 | -0.812872 | 3.406887e-51 | -8.615850e-47 |
| Msa0363460 | Msa1257870 | -0.816748 | 4.711662e-52 | -8.615850e-47 |
| Msa1118930 | Msa1257870 | -0.808027 | 3.788596e-50 | -8.615850e-47 |
| Msa1128160 | Msa1257870 | -0.801591 | 8.374928e-49 | -8.615850e-47 |
| Msa1165360 | Msa1257870 | -0.805586 | 1.242529e-49 | -8.615850e-47 |
| Msa1202000 | Msa1257870 | 0.807221 | 5.618741e-50 | -8.615850e-47 |
| Msa1204980 | Msa1257870 | 0.827364 | 1.629936e-54 | -8.615850e-47 |
| Msa1205010 | Msa1257870 | 0.824359 | 8.425960e-54 | -8.615850e-47 |
| Msa1207670 | Msa1257870 | 0.825493 | 4.547940e-54 | -8.615850e-47 |
| Msa0506530 | Msa1257870 | 0.867694 | 1.132959e-65 | -8.615850e-47 |
| Msa0509020 | Msa1257870 | -0.806478 | 8.066035e-50 | -8.615850e-47 |
| Msa0514240 | Msa1257870 | -0.807899 | 4.034701e-50 | -8.615850e-47 |
| Msa0524890 | Msa1257870 | 0.819691 | 1.016775e-52 | -8.615850e-47 |
| Msa0531970 | Msa1257870 | 0.827137 | 1.847027e-54 | -8.615850e-47 |
| Msa0540070 | Msa1257870 | -0.801201 | 1.006821e-48 | -8.615850e-47 |
| Msa0543900 | Msa1257870 | -0.815938 | 7.154574e-52 | -8.615850e-47 |
| Msa0557680 | Msa1257870 | -0.801239 | 9.891409e-49 | -8.615850e-47 |
| Msa0563140 | Msa1257870 | -0.811209 | 7.848063e-51 | -8.615850e-47 |
| Msa0564490 | Msa1257870 | -0.810267 | 1.254792e-50 | -8.615850e-47 |
| Msa0576990 | Msa1257870 | 0.884194 | 2.360889e-71 | -8.615850e-47 |
| Msa0591780 | Msa1257870 | -0.810301 | 1.234104e-50 | -8.615850e-47 |
| Msa0599770 | Msa1257870 | -0.803126 | 4.045723e-49 | -8.615850e-47 |
| Msa0843280 | Msa1257870 | -0.810198 | 1.298387e-50 | -8.615850e-47 |
| Msa0845590 | Msa1257870 | 0.804483 | 2.113837e-49 | -8.615850e-47 |
| Msa0902980 | Msa1257870 | -0.816635 | 4.995665e-52 | -8.615850e-47 |
| Msa0927840 | Msa1257870 | 0.810900 | 9.157873e-51 | -8.615850e-47 |
| Msa0935370 | Msa1257870 | -0.820195 | 7.797338e-53 | -8.615850e-47 |
| Msa0946120 | Msa1257870 | -0.812086 | 5.059752e-51 | -8.615850e-47 |
| Msa0951720 | Msa1257870 | -0.836243 | 1.048841e-56 | -8.615850e-47 |
| Msa0961420 | Msa1257870 | 0.824389 | 8.289167e-54 | -8.615850e-47 |
| Msa0968320 | Msa1257870 | 0.847746 | 9.517823e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257870 | MtrunA17_Chr4g0056621 | 90.728 | 151 | 11 | 1 | 1 | 151 | 1 | 148 | 1.41e-95 | 272 |
| Msa1257870 | MtrunA17_Chr5g0398841 | 45.600 | 125 | 62 | 5 | 31 | 151 | 34 | 156 | 8.33e-28 | 100 |
| Msa1257870 | MtrunA17_Chr5g0398831 | 35.862 | 145 | 83 | 3 | 9 | 145 | 12 | 154 | 2.91e-25 | 94.7 |
| Msa1257870 | MtrunA17_Chr5g0398821 | 36.242 | 149 | 88 | 5 | 5 | 150 | 9 | 153 | 8.27e-25 | 93.2 |
| Msa1257870 | MtrunA17_Chr4g0003641 | 34.959 | 123 | 63 | 6 | 6 | 123 | 10 | 120 | 2.47e-12 | 60.8 |
| Msa1257870 | MtrunA17_Chr6g0478571 | 27.885 | 104 | 74 | 1 | 33 | 135 | 52 | 155 | 9.76e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257870 | AT1G62790.1 | 41.060 | 151 | 78 | 5 | 6 | 150 | 5 | 150 | 5.23e-31 | 109 |
| Msa1257870 | AT1G62790.2 | 41.333 | 150 | 78 | 5 | 6 | 150 | 5 | 149 | 6.18e-31 | 108 |
| Msa1257870 | AT1G70250.1 | 40.594 | 101 | 55 | 2 | 11 | 110 | 4 | 100 | 2.53e-20 | 86.7 |
| Msa1257870 | AT1G73550.1 | 32.667 | 150 | 85 | 6 | 5 | 144 | 5 | 148 | 3.83e-18 | 76.3 |
| Msa1257870 | AT1G73560.1 | 33.846 | 130 | 79 | 3 | 23 | 150 | 22 | 146 | 7.32e-17 | 72.8 |
| Msa1257870 | AT1G18280.1 | 34.259 | 108 | 59 | 2 | 11 | 106 | 7 | 114 | 5.83e-15 | 68.6 |
| Msa1257870 | AT1G73550.2 | 32.283 | 127 | 75 | 5 | 5 | 126 | 5 | 125 | 6.60e-14 | 65.1 |
| Msa1257870 | AT4G12360.1 | 31.967 | 122 | 78 | 4 | 33 | 150 | 41 | 161 | 1.16e-11 | 59.7 |
Find 41 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTGAACTCTGATTCAATT+TGG | 0.199864 | 8_2:+58887577 | Msa1257870:three_prime_UTR |
| GGTAATCAGCACATGGAATT+AGG | 0.241616 | 8_2:-58884522 | None:intergenic |
| TGTAACCTCTTCTATGCTCC+TGG | 0.354505 | 8_2:+58884619 | Msa1257870:CDS |
| ATGTAATTTCATACATTGAT+TGG | 0.355871 | 8_2:+58887506 | Msa1257870:three_prime_UTR |
| AGTGAACTCTGATTCAATTT+GGG | 0.369936 | 8_2:+58887578 | Msa1257870:three_prime_UTR |
| GTTTCTGGATCTCTTGTGTT+TGG | 0.377405 | 8_2:-58884341 | None:intergenic |
| TAGGTGGTTTGGTTGAATTA+AGG | 0.397792 | 8_2:-58884543 | None:intergenic |
| GCTACAACAGGTGGTGATAA+AGG | 0.397964 | 8_2:+58887356 | Msa1257870:intron |
| GGCGTTTGACTTGACAAATA+AGG | 0.423138 | 8_2:+58884250 | Msa1257870:five_prime_UTR |
| ACAGCAAGAACTAGGTGGTT+TGG | 0.446180 | 8_2:-58884554 | None:intergenic |
| TCAGCTCCAGCTCCTACTTC+CGG | 0.449180 | 8_2:+58885693 | Msa1257870:CDS |
| AATACAGTAGAGGTTTAAGA+AGG | 0.453213 | 8_2:-58887465 | None:intergenic |
| ATATATCATATATAAATAAA+CGG | 0.474354 | 8_2:-58887673 | None:intergenic |
| TGTGTCATTGATGGTAGGTA+TGG | 0.480773 | 8_2:+58884438 | Msa1257870:CDS |
| ATTCATCATGCAGCTACAAC+AGG | 0.482397 | 8_2:+58887344 | Msa1257870:intron |
| ACTTCCGGCGGGTCCCCATC+GGG | 0.488088 | 8_2:+58885708 | Msa1257870:CDS |
| ATGATGTTCAATTAGAAAAG+TGG | 0.491731 | 8_2:+58887434 | Msa1257870:exon |
| ATTGGATCACAGCAAGAACT+AGG | 0.493116 | 8_2:-58884562 | None:intergenic |
| GCAGGCAGAGTCTCATTCAC+TGG | 0.496932 | 8_2:+58887383 | Msa1257870:CDS |
| TTTATATATGATATATGATG+TGG | 0.498533 | 8_2:+58887680 | Msa1257870:three_prime_UTR |
| ATTAGGTTTGTAGCACATGA+AGG | 0.504332 | 8_2:-58884505 | None:intergenic |
| CTTTAACATCAGTACTGCTC+AGG | 0.517759 | 8_2:+58884654 | Msa1257870:CDS |
| GGTGGTGATAAAGGAGCTGC+AGG | 0.532328 | 8_2:+58887365 | Msa1257870:CDS |
| CTCCAGCTCCTACTTCCGGC+GGG | 0.538414 | 8_2:+58885697 | Msa1257870:CDS |
| GATGGGGACCCGCCGGAAGT+AGG | 0.543887 | 8_2:-58885705 | None:intergenic |
| TGGATCTCTTGTGTTTGGTG+AGG | 0.554317 | 8_2:-58884336 | None:intergenic |
| TAAATAAATAAATACAGTAG+AGG | 0.569488 | 8_2:-58887475 | None:intergenic |
| ATACAGTAGAGGTTTAAGAA+GGG | 0.575037 | 8_2:-58887464 | None:intergenic |
| GAAGAAGCTTCTTACCCGAT+GGG | 0.587184 | 8_2:-58885722 | None:intergenic |
| TTAGGTTTGTAGCACATGAA+GGG | 0.589848 | 8_2:-58884504 | None:intergenic |
| GCTCCAGCTCCTACTTCCGG+CGG | 0.590920 | 8_2:+58885696 | Msa1257870:CDS |
| TTAAAGCTTTCAAGTAAACC+AGG | 0.617709 | 8_2:-58884637 | None:intergenic |
| TGTGTTGATAAATCTACTTG+TGG | 0.625177 | 8_2:+58887636 | Msa1257870:three_prime_UTR |
| GTAAACCAGGAGCATAGAAG+AGG | 0.629690 | 8_2:-58884624 | None:intergenic |
| CATCATGCAGCTACAACAGG+TGG | 0.645611 | 8_2:+58887347 | Msa1257870:intron |
| GTACATACTGTGTTTGCAAG+TGG | 0.645856 | 8_2:-58884719 | None:intergenic |
| AAGAAGCTTCTTACCCGATG+GGG | 0.671534 | 8_2:-58885721 | None:intergenic |
| CTTACGTTGAGTCGTAACTG+TGG | 0.695135 | 8_2:+58884679 | Msa1257870:CDS |
| GGATCACAGCAAGAACTAGG+TGG | 0.697170 | 8_2:-58884559 | None:intergenic |
| GAATTAAGGTAATCAGCACA+TGG | 0.709687 | 8_2:-58884529 | None:intergenic |
| ATTGATGATCAACACTACAG+AGG | 0.712965 | 8_2:+58884465 | Msa1257870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGCTTTTTTTTTTTTTTTAT+TGG | + | chr8_2:58884824-58884843 | Msa1257870:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTATTGG+TGG | + | chr8_2:58884827-58884846 | Msa1257870:intron | 10.0% |
| !!! | GATTTCTTAATAAATTTTTT+AGG | + | chr8_2:58885222-58885241 | Msa1257870:intron | 10.0% |
| !!! | TTTTTTAGGAATTTTTATTA+TGG | + | chr8_2:58885236-58885255 | Msa1257870:intron | 10.0% |
| !!! | AAAAAACTATAAATTTTAGA+CGG | + | chr8_2:58886766-58886785 | Msa1257870:intron | 10.0% |
| !!! | GTTTATGAAATTTAAAATTT+GGG | - | chr8_2:58886852-58886871 | None:intergenic | 10.0% |
| !!! | TGTTTATGAAATTTAAAATT+TGG | - | chr8_2:58886853-58886872 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAGTAGAA+TGG | - | chr8_2:58887200-58887219 | None:intergenic | 10.0% |
| !! | TACATAAATGAAAATTGATA+CGG | - | chr8_2:58884938-58884957 | None:intergenic | 15.0% |
| !!! | TGAATATAACTTTTTTTTCT+AGG | - | chr8_2:58884993-58885012 | None:intergenic | 15.0% |
| !! | TATTTAATGTCAAAAATTTG+TGG | - | chr8_2:58885045-58885064 | None:intergenic | 15.0% |
| !!! | CAAATTTTTGACATTAAATA+TGG | + | chr8_2:58885045-58885064 | Msa1257870:intron | 15.0% |
| !! | ATTAAGAAATCAAATATACT+TGG | - | chr8_2:58885213-58885232 | None:intergenic | 15.0% |
| !!! | TTCATTGTAAAATAAACTTT+TGG | + | chr8_2:58885281-58885300 | Msa1257870:intron | 15.0% |
| !! | AATGCAGTTTATTAATTATA+TGG | - | chr8_2:58885446-58885465 | None:intergenic | 15.0% |
| !!! | TGAAAGCATTTTTTTTTTTT+AGG | + | chr8_2:58885591-58885610 | Msa1257870:intron | 15.0% |
| !!! | GAAAGCATTTTTTTTTTTTA+GGG | + | chr8_2:58885592-58885611 | Msa1257870:intron | 15.0% |
| !!! | AAAGCATTTTTTTTTTTTAG+GGG | + | chr8_2:58885593-58885612 | Msa1257870:intron | 15.0% |
| !! | TTATTCAAACAAAAAGATAA+AGG | - | chr8_2:58885662-58885681 | None:intergenic | 15.0% |
| !!! | AAAGTTGATTTTTATTCTTT+GGG | - | chr8_2:58886091-58886110 | None:intergenic | 15.0% |
| !!! | AAAAGTTGATTTTTATTCTT+TGG | - | chr8_2:58886092-58886111 | None:intergenic | 15.0% |
| !!! | TTTTAATCTTCTTCTATTTT+TGG | - | chr8_2:58886620-58886639 | None:intergenic | 15.0% |
| !! | AATAGAAGAAGATTAAAAAA+AGG | + | chr8_2:58886622-58886641 | Msa1257870:intron | 15.0% |
| !! | TTGAAATGAAAAAAAGATAA+AGG | - | chr8_2:58886697-58886716 | None:intergenic | 15.0% |
| !!! | ATCTTTTTTTCATTTCAATT+TGG | + | chr8_2:58886699-58886718 | Msa1257870:intron | 15.0% |
| !! | CATAAACAATAAAATTTCAA+TGG | + | chr8_2:58886865-58886884 | Msa1257870:intron | 15.0% |
| !!! | TGCATGTATAATTTTTTTTT+TGG | - | chr8_2:58887170-58887189 | None:intergenic | 15.0% |
| !! | TTAGAAATTGTAATAATAAG+TGG | - | chr8_2:58887309-58887328 | None:intergenic | 15.0% |
| !! | TAAATAAATAAATACAGTAG+AGG | - | chr8_2:58887478-58887497 | None:intergenic | 15.0% |
| !! | TTTATATATGATATATGATG+TGG | + | chr8_2:58887680-58887699 | Msa1257870:three_prime_UTR | 15.0% |
| !!! | AATTTGATTTTTAGAGTTTC+TGG | - | chr8_2:58884359-58884378 | None:intergenic | 20.0% |
| !!! | AAATATTAACATGTCACTTT+AGG | + | chr8_2:58885119-58885138 | Msa1257870:intron | 20.0% |
| !!! | ATATACTCATAAACTTTTTG+AGG | + | chr8_2:58885144-58885163 | Msa1257870:intron | 20.0% |
| !!! | TATACTCATAAACTTTTTGA+GGG | + | chr8_2:58885145-58885164 | Msa1257870:intron | 20.0% |
| !! | TTTGTTTGAATAATTTCAGA+TGG | + | chr8_2:58885669-58885688 | Msa1257870:intron | 20.0% |
| !! | TTGTTTGAATAATTTCAGAT+GGG | + | chr8_2:58885670-58885689 | Msa1257870:intron | 20.0% |
| !!! | TCTTAACATAGTATGTTTTA+AGG | + | chr8_2:58886319-58886338 | Msa1257870:intron | 20.0% |
| !!! | CTTAACATAGTATGTTTTAA+GGG | + | chr8_2:58886320-58886339 | Msa1257870:intron | 20.0% |
| !! | ACCTTAAAATTATTTATGAG+TGG | + | chr8_2:58886356-58886375 | Msa1257870:intron | 20.0% |
| !!! | AAGAGTATTCTATTTTATCA+AGG | - | chr8_2:58886586-58886605 | None:intergenic | 20.0% |
| !! | TAAATATCTTCTTTGTGTAT+TGG | - | chr8_2:58886796-58886815 | None:intergenic | 20.0% |
| !!! | ATCATTATCATTGTTTTTGA+AGG | + | chr8_2:58886962-58886981 | Msa1257870:intron | 20.0% |
| !! | TAATCTAACAATATTGACAT+TGG | - | chr8_2:58887068-58887087 | None:intergenic | 20.0% |
| !!! | CTCACATAATTGATATATTT+TGG | - | chr8_2:58887102-58887121 | None:intergenic | 20.0% |
| !! | AAAAAAAGTAGAATGGAATT+GGG | - | chr8_2:58887193-58887212 | None:intergenic | 20.0% |
| !! | AAAAAAAAGTAGAATGGAAT+TGG | - | chr8_2:58887194-58887213 | None:intergenic | 20.0% |
| !!! | ATTCTCTTTTATACTCTTAT+TGG | + | chr8_2:58887406-58887425 | Msa1257870:CDS | 20.0% |
| !! | ATGTAATTTCATACATTGAT+TGG | + | chr8_2:58887506-58887525 | Msa1257870:three_prime_UTR | 20.0% |
| ! | ACAACAACAACAACAAAAAA+TGG | + | chr8_2:58884393-58884412 | Msa1257870:exon | 25.0% |
| !!! | GTTTCAACTGTTTTTTTGAT+TGG | - | chr8_2:58884583-58884602 | None:intergenic | 25.0% |
| ! | TCGATTCAATTCATAATTTC+TGG | - | chr8_2:58884904-58884923 | None:intergenic | 25.0% |
| ! | GTGTGGTTGTTAAAAATAAA+TGG | + | chr8_2:58885321-58885340 | Msa1257870:intron | 25.0% |
| !!! | ACACTTTTTTTCCATCAATT+TGG | + | chr8_2:58885478-58885497 | Msa1257870:intron | 25.0% |
| ! | AAAAAACATCAAATGTTTGC+TGG | + | chr8_2:58885554-58885573 | Msa1257870:intron | 25.0% |
| !!! | CATTTTTTTTTTTTAGGGGA+AGG | + | chr8_2:58885597-58885616 | Msa1257870:intron | 25.0% |
| ! | ATTCGATCGATTAAAGAATA+AGG | + | chr8_2:58885908-58885927 | Msa1257870:intron | 25.0% |
| ! | TTCGATCGATTAAAGAATAA+GGG | + | chr8_2:58885909-58885928 | Msa1257870:intron | 25.0% |
| !! | TCAAAAGCAGTTTTCTTTTA+TGG | - | chr8_2:58885965-58885984 | None:intergenic | 25.0% |
| ! | ACTGGTTAAGAATATGAAAA+AGG | - | chr8_2:58886043-58886062 | None:intergenic | 25.0% |
| ! | TAATGAGTCTTTGTTAACAA+AGG | + | chr8_2:58886202-58886221 | Msa1257870:intron | 25.0% |
| ! | CTTTGTTAACAAAGGTTTAT+AGG | + | chr8_2:58886210-58886229 | Msa1257870:intron | 25.0% |
| !! | GCCACTCATAAATAATTTTA+AGG | - | chr8_2:58886360-58886379 | None:intergenic | 25.0% |
| ! | AAAATTATTTATGAGTGGCA+TGG | + | chr8_2:58886361-58886380 | Msa1257870:intron | 25.0% |
| ! | AATAAGAGATCAAATTTGAG+AGG | + | chr8_2:58886463-58886482 | Msa1257870:intron | 25.0% |
| ! | ATAAGAGATCAAATTTGAGA+GGG | + | chr8_2:58886464-58886483 | Msa1257870:intron | 25.0% |
| ! | TATCAAGGTAAAAACATTAC+TGG | - | chr8_2:58886571-58886590 | None:intergenic | 25.0% |
| ! | TAATCCCTTAACTTAATTTC+AGG | + | chr8_2:58886659-58886678 | Msa1257870:intron | 25.0% |
| ! | GTTACCTGAAATTAAGTTAA+GGG | - | chr8_2:58886666-58886685 | None:intergenic | 25.0% |
| ! | TGTTACCTGAAATTAAGTTA+AGG | - | chr8_2:58886667-58886686 | None:intergenic | 25.0% |
| !! | AAACTATAAATTTTAGACGG+TGG | + | chr8_2:58886769-58886788 | Msa1257870:intron | 25.0% |
| !! | TTGTCTTTTCCTAATTCTAA+GGG | - | chr8_2:58886820-58886839 | None:intergenic | 25.0% |
| !! | TTTGTCTTTTCCTAATTCTA+AGG | - | chr8_2:58886821-58886840 | None:intergenic | 25.0% |
| ! | TCAATGGAGAACAATTATAT+TGG | + | chr8_2:58886881-58886900 | Msa1257870:intron | 25.0% |
| ! | CATAAACAATTATTTCACAC+CGG | + | chr8_2:58886935-58886954 | Msa1257870:intron | 25.0% |
| !! | AACAATGATAATGATAACAC+CGG | - | chr8_2:58886957-58886976 | None:intergenic | 25.0% |
| ! | TATTGTTAGATTAGATAGCA+TGG | + | chr8_2:58887075-58887094 | Msa1257870:intron | 25.0% |
| ! | GATTATACATGTATAGTTCT+TGG | - | chr8_2:58887229-58887248 | None:intergenic | 25.0% |
| ! | TTGTAATAATAAGTGGCAAT+TGG | - | chr8_2:58887302-58887321 | None:intergenic | 25.0% |
| !! | ACTTTTCTAATTGAACATCA+TGG | - | chr8_2:58887435-58887454 | None:intergenic | 25.0% |
| ! | ATGATGTTCAATTAGAAAAG+TGG | + | chr8_2:58887434-58887453 | Msa1257870:exon | 25.0% |
| ! | TTAAAGCTTTCAAGTAAACC+AGG | - | chr8_2:58884640-58884659 | None:intergenic | 30.0% |
| TTTCTAGATCTAGTGAGAAA+AGG | + | chr8_2:58884874-58884893 | Msa1257870:intron | 30.0% | |
| TTCTAGATCTAGTGAGAAAA+GGG | + | chr8_2:58884875-58884894 | Msa1257870:intron | 30.0% | |
| AATACAACTAAGCAAGCAAT+GGG | - | chr8_2:58884961-58884980 | None:intergenic | 30.0% | |
| AAATACAACTAAGCAAGCAA+TGG | - | chr8_2:58884962-58884981 | None:intergenic | 30.0% | |
| ATTGCTTGCTTAGTTGTATT+TGG | + | chr8_2:58884961-58884980 | Msa1257870:intron | 30.0% | |
| !!! | GATGTTTTTTATGAGACTGA+TGG | - | chr8_2:58885544-58885563 | None:intergenic | 30.0% |
| ! | AAGAAGTGAAAATCAAGTTG+AGG | - | chr8_2:58885755-58885774 | None:intergenic | 30.0% |
| ! | TCTTTTATGGTATGCTTAAC+CGG | - | chr8_2:58885952-58885971 | None:intergenic | 30.0% |
| !! | TAGTCTATCCATTAGTCTTT+CGG | + | chr8_2:58886134-58886153 | Msa1257870:intron | 30.0% |
| TAAAGTAACCGAAAGACTAA+TGG | - | chr8_2:58886145-58886164 | None:intergenic | 30.0% | |
| ! | CTTAATTTCAGGTAACAGTT+TGG | + | chr8_2:58886670-58886689 | Msa1257870:intron | 30.0% |
| ! | TGGTACCTGAATTTAAGTTA+AGG | + | chr8_2:58886719-58886738 | Msa1257870:intron | 30.0% |
| ! | GGTACCTGAATTTAAGTTAA+GGG | + | chr8_2:58886720-58886739 | Msa1257870:intron | 30.0% |
| TAGTCCCTTAACTTAAATTC+AGG | - | chr8_2:58886727-58886746 | None:intergenic | 30.0% | |
| GATATTTACCCCTTAGAATT+AGG | + | chr8_2:58886808-58886827 | Msa1257870:intron | 30.0% | |
| ! | TGTCTTTTCCTAATTCTAAG+GGG | - | chr8_2:58886819-58886838 | None:intergenic | 30.0% |
| ATGATTAGATGTACTTCACA+AGG | - | chr8_2:58887257-58887276 | None:intergenic | 30.0% | |
| TTGTGAAGTACATCTAATCA+TGG | + | chr8_2:58887256-58887275 | Msa1257870:intron | 30.0% | |
| ATACAGTAGAGGTTTAAGAA+GGG | - | chr8_2:58887467-58887486 | None:intergenic | 30.0% | |
| AATACAGTAGAGGTTTAAGA+AGG | - | chr8_2:58887468-58887487 | None:intergenic | 30.0% | |
| TAGTGAACTCTGATTCAATT+TGG | + | chr8_2:58887577-58887596 | Msa1257870:three_prime_UTR | 30.0% | |
| AGTGAACTCTGATTCAATTT+GGG | + | chr8_2:58887578-58887597 | Msa1257870:three_prime_UTR | 30.0% | |
| ! | TGTGTTGATAAATCTACTTG+TGG | + | chr8_2:58887636-58887655 | Msa1257870:three_prime_UTR | 30.0% |
| CAACAACAACAAAAAATGGC+TGG | + | chr8_2:58884397-58884416 | Msa1257870:exon | 35.0% | |
| !! | CATCACTTTTGTGTCATTGA+TGG | + | chr8_2:58884429-58884448 | Msa1257870:CDS | 35.0% |
| !! | ACTTTTGTGTCATTGATGGT+AGG | + | chr8_2:58884433-58884452 | Msa1257870:CDS | 35.0% |
| ! | ATTGATGATCAACACTACAG+AGG | + | chr8_2:58884465-58884484 | Msa1257870:CDS | 35.0% |
| TTAGGTTTGTAGCACATGAA+GGG | - | chr8_2:58884507-58884526 | None:intergenic | 35.0% | |
| ATTAGGTTTGTAGCACATGA+AGG | - | chr8_2:58884508-58884527 | None:intergenic | 35.0% | |
| GAATTAAGGTAATCAGCACA+TGG | - | chr8_2:58884532-58884551 | None:intergenic | 35.0% | |
| !! | TAGGTGGTTTGGTTGAATTA+AGG | - | chr8_2:58884546-58884565 | None:intergenic | 35.0% |
| TCTCACTAGATCTAGAAAAC+TGG | - | chr8_2:58884872-58884891 | None:intergenic | 35.0% | |
| TCTAGATCTAGTGAGAAAAG+GGG | + | chr8_2:58884876-58884895 | Msa1257870:intron | 35.0% | |
| ! | GAAGTGTCTAGTATTTAGCT+TGG | - | chr8_2:58885264-58885283 | None:intergenic | 35.0% |
| ! | AATTTGGTCCATCTGGTTTA+AGG | + | chr8_2:58885494-58885513 | Msa1257870:intron | 35.0% |
| !! | AAGTGAAAATCAAGTTGAGG+AGG | - | chr8_2:58885752-58885771 | None:intergenic | 35.0% |
| ! | TCTATTGTCAGCTTTAACTG+CGG | - | chr8_2:58885802-58885821 | None:intergenic | 35.0% |
| ! | ATTCTTTGGGAAATGCTAAC+CGG | - | chr8_2:58886078-58886097 | None:intergenic | 35.0% |
| CTAATTTCAATTCACCGTGT+TGG | - | chr8_2:58886420-58886439 | None:intergenic | 35.0% | |
| TGATGAATTGCAAGTTTGTG+AGG | - | chr8_2:58887332-58887351 | None:intergenic | 35.0% | |
| !! | GGCGTTTGACTTGACAAATA+AGG | + | chr8_2:58884250-58884269 | Msa1257870:five_prime_UTR | 40.0% |
| ! | GTTTCTGGATCTCTTGTGTT+TGG | - | chr8_2:58884344-58884363 | None:intergenic | 40.0% |
| ! | TGTGTCATTGATGGTAGGTA+TGG | + | chr8_2:58884438-58884457 | Msa1257870:CDS | 40.0% |
| GGTAATCAGCACATGGAATT+AGG | - | chr8_2:58884525-58884544 | None:intergenic | 40.0% | |
| ATTGGATCACAGCAAGAACT+AGG | - | chr8_2:58884565-58884584 | None:intergenic | 40.0% | |
| CTTTAACATCAGTACTGCTC+AGG | + | chr8_2:58884654-58884673 | Msa1257870:CDS | 40.0% | |
| GTACATACTGTGTTTGCAAG+TGG | - | chr8_2:58884722-58884741 | None:intergenic | 40.0% | |
| ATGCCTAATTGCTAAGAGTG+TGG | + | chr8_2:58885304-58885323 | Msa1257870:intron | 40.0% | |
| CAACCACACTCTTAGCAATT+AGG | - | chr8_2:58885310-58885329 | None:intergenic | 40.0% | |
| TTCCATCAATTTGGTCCATC+TGG | + | chr8_2:58885487-58885506 | Msa1257870:intron | 40.0% | |
| AACCAGATGGACCAAATTGA+TGG | - | chr8_2:58885492-58885511 | None:intergenic | 40.0% | |
| !! | CATCTTAGCCTTAAACCAGA+TGG | - | chr8_2:58885505-58885524 | None:intergenic | 40.0% |
| AAGAATAAGGGTCCTCTAAC+CGG | + | chr8_2:58885921-58885940 | Msa1257870:intron | 40.0% | |
| TTTATGGTATGCTTAACCGG+AGG | - | chr8_2:58885949-58885968 | None:intergenic | 40.0% | |
| CATATTCTTAACCAGTGTCC+CGG | + | chr8_2:58886047-58886066 | Msa1257870:intron | 40.0% | |
| ATATTCTTAACCAGTGTCCC+GGG | + | chr8_2:58886048-58886067 | Msa1257870:intron | 40.0% | |
| !!! | CCACAATTTTGAGACCAACA+CGG | + | chr8_2:58886403-58886422 | Msa1257870:intron | 40.0% |
| TTGAGAGGGAATAGTAGTTG+AGG | + | chr8_2:58886478-58886497 | Msa1257870:intron | 40.0% | |
| TGAGAGGGAATAGTAGTTGA+GGG | + | chr8_2:58886479-58886498 | Msa1257870:intron | 40.0% | |
| ATTCATCATGCAGCTACAAC+AGG | + | chr8_2:58887344-58887363 | Msa1257870:intron | 40.0% | |
| ! | TGGATCTCTTGTGTTTGGTG+AGG | - | chr8_2:58884339-58884358 | None:intergenic | 45.0% |
| ACAGCAAGAACTAGGTGGTT+TGG | - | chr8_2:58884557-58884576 | None:intergenic | 45.0% | |
| TGTAACCTCTTCTATGCTCC+TGG | + | chr8_2:58884619-58884638 | Msa1257870:CDS | 45.0% | |
| ! | GTAAACCAGGAGCATAGAAG+AGG | - | chr8_2:58884627-58884646 | None:intergenic | 45.0% |
| CTTACGTTGAGTCGTAACTG+TGG | + | chr8_2:58884679-58884698 | Msa1257870:CDS | 45.0% | |
| AAGAAGCTTCTTACCCGATG+GGG | - | chr8_2:58885724-58885743 | None:intergenic | 45.0% | |
| GAAGAAGCTTCTTACCCGAT+GGG | - | chr8_2:58885725-58885744 | None:intergenic | 45.0% | |
| TGAAGAAGCTTCTTACCCGA+TGG | - | chr8_2:58885726-58885745 | None:intergenic | 45.0% | |
| TATTCTTAACCAGTGTCCCG+GGG | + | chr8_2:58886049-58886068 | Msa1257870:intron | 45.0% | |
| ! | CCGTGTTGGTCTCAAAATTG+TGG | - | chr8_2:58886406-58886425 | None:intergenic | 45.0% |
| GCTACAACAGGTGGTGATAA+AGG | + | chr8_2:58887356-58887375 | Msa1257870:intron | 45.0% | |
| !!! | TTTATTTATTTTTCTTTAAT+TGG | + | chr8_2:58884754-58884773 | Msa1257870:intron | 5.0% |
| !!! | TAATAAATATTTGTTATTAA+TGG | + | chr8_2:58886293-58886312 | Msa1257870:intron | 5.0% |
| !!! | TAAAATTTATAGTTTTTTTA+AGG | - | chr8_2:58886764-58886783 | None:intergenic | 5.0% |
| !! | ATATATCATATATAAATAAA+CGG | - | chr8_2:58887676-58887695 | None:intergenic | 5.0% |
| GGATCACAGCAAGAACTAGG+TGG | - | chr8_2:58884562-58884581 | None:intergenic | 50.0% | |
| ATTCTTAACCAGTGTCCCGG+GGG | + | chr8_2:58886050-58886069 | Msa1257870:intron | 50.0% | |
| CATCATGCAGCTACAACAGG+TGG | + | chr8_2:58887347-58887366 | Msa1257870:intron | 50.0% | |
| TCAGCTCCAGCTCCTACTTC+CGG | + | chr8_2:58885693-58885712 | Msa1257870:CDS | 55.0% | |
| ! | GTATGCTTAACCGGAGGCAC+CGG | - | chr8_2:58885943-58885962 | None:intergenic | 55.0% |
| GGTGGTGATAAAGGAGCTGC+AGG | + | chr8_2:58887365-58887384 | Msa1257870:CDS | 55.0% | |
| GCAGGCAGAGTCTCATTCAC+TGG | + | chr8_2:58887383-58887402 | Msa1257870:CDS | 55.0% | |
| !! | TAACCGGAGGCACCGGTTAG+AGG | - | chr8_2:58885936-58885955 | None:intergenic | 60.0% |
| AAATGCTAACCGGTGCCCCC+GGG | - | chr8_2:58886068-58886087 | None:intergenic | 60.0% | |
| GAAATGCTAACCGGTGCCCC+CGG | - | chr8_2:58886069-58886088 | None:intergenic | 60.0% | |
| GCTCCAGCTCCTACTTCCGG+CGG | + | chr8_2:58885696-58885715 | Msa1257870:CDS | 65.0% | |
| CTCCAGCTCCTACTTCCGGC+GGG | + | chr8_2:58885697-58885716 | Msa1257870:CDS | 65.0% | |
| TACTTCCGGCGGGTCCCCAT+CGG | + | chr8_2:58885707-58885726 | Msa1257870:CDS | 65.0% | |
| GGTCCTCTAACCGGTGCCTC+CGG | + | chr8_2:58885930-58885949 | Msa1257870:intron | 65.0% | |
| GACCCGCCGGAAGTAGGAGC+TGG | - | chr8_2:58885702-58885721 | None:intergenic | 70.0% | |
| GATGGGGACCCGCCGGAAGT+AGG | - | chr8_2:58885708-58885727 | None:intergenic | 70.0% | |
| ACTTCCGGCGGGTCCCCATC+GGG | + | chr8_2:58885708-58885727 | Msa1257870:CDS | 70.0% | |
| CTTACCCGATGGGGACCCGC+CGG | - | chr8_2:58885715-58885734 | None:intergenic | 70.0% | |
| ! | AACCAGTGTCCCGGGGGCAC+CGG | + | chr8_2:58886056-58886075 | Msa1257870:intron | 70.0% |
| AACCGGTGCCCCCGGGACAC+TGG | - | chr8_2:58886061-58886080 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 58884247 | 58887733 | 58884247 | ID=Msa1257870;Name=Msa1257870 |
| chr8_2 | mRNA | 58884247 | 58887733 | 58884247 | ID=Msa1257870-mRNA-1;Parent=Msa1257870;Name=Msa1257870-mRNA-1;_AED=0.05;_eAED=0.05;_QI=165|1|1|1|0.5|0.33|3|285|151 |
| chr8_2 | exon | 58884247 | 58884733 | 58884247 | ID=Msa1257870-mRNA-1:exon:18199;Parent=Msa1257870-mRNA-1 |
| chr8_2 | exon | 58885688 | 58885729 | 58885688 | ID=Msa1257870-mRNA-1:exon:18200;Parent=Msa1257870-mRNA-1 |
| chr8_2 | exon | 58887357 | 58887733 | 58887357 | ID=Msa1257870-mRNA-1:exon:18201;Parent=Msa1257870-mRNA-1 |
| chr8_2 | five_prime_UTR | 58884247 | 58884411 | 58884247 | ID=Msa1257870-mRNA-1:five_prime_utr;Parent=Msa1257870-mRNA-1 |
| chr8_2 | CDS | 58884412 | 58884733 | 58884412 | ID=Msa1257870-mRNA-1:cds;Parent=Msa1257870-mRNA-1 |
| chr8_2 | CDS | 58885688 | 58885729 | 58885688 | ID=Msa1257870-mRNA-1:cds;Parent=Msa1257870-mRNA-1 |
| chr8_2 | CDS | 58887357 | 58887448 | 58887357 | ID=Msa1257870-mRNA-1:cds;Parent=Msa1257870-mRNA-1 |
| chr8_2 | three_prime_UTR | 58887449 | 58887733 | 58887449 | ID=Msa1257870-mRNA-1:three_prime_utr;Parent=Msa1257870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
