AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0279330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0279330 MtrunA17_Chr2g0292811 73.375 323 25 3 1 262 1 323 5.76e-171 488
Msa0279330 MtrunA17_Chr2g0292811 77.049 61 13 1 254 314 13 72 6.04e-23 100
Msa0279330 MtrunA17_Chr2g0287361 73.457 324 24 4 1 262 1 324 2.65e-169 483
Msa0279330 MtrunA17_Chr2g0287361 72.464 69 18 1 246 314 6 73 8.43e-27 111
Msa0279330 MtrunA17_Chr2g0292801 65.278 288 39 3 36 262 299 586 1.52e-125 381
Msa0279330 MtrunA17_Chr2g0292801 81.944 72 13 0 1 72 1 72 1.18e-22 102
Msa0279330 MtrunA17_Chr2g0292821 64.931 288 40 3 36 262 299 586 6.42e-124 377
Msa0279330 MtrunA17_Chr2g0292821 81.944 72 13 0 1 72 1 72 1.15e-22 102
Msa0279330 MtrunA17_Chr8g0360691 30.945 307 128 10 6 233 6 307 1.43e-36 139
Msa0279330 MtrunA17_Chr2g0318311 33.333 276 104 10 37 233 33 307 2.27e-36 139
Msa0279330 MtrunA17_Chr2g0318341 32.609 276 106 10 37 233 33 307 1.41e-35 136
Msa0279330 MtrunA17_Chr4g0029291 29.758 289 119 8 25 233 98 382 1.76e-35 137
Msa0279330 MtrunA17_Chr4g0029271 30.483 269 106 7 46 233 105 373 2.56e-33 131
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0279330 AT3G19430.2 47.872 282 69 7 46 256 295 569 6.64e-77 254
Msa0279330 AT3G19430.2 73.684 57 13 1 258 314 20 74 1.66e-19 92.8
Msa0279330 AT3G19430.2 64.706 68 21 2 6 72 9 74 3.16e-17 85.5
Msa0279330 AT3G19430.1 47.872 282 69 7 46 256 272 546 7.49e-77 254
Msa0279330 AT3G19430.1 78.846 52 9 1 263 314 2 51 1.47e-18 89.7
Msa0279330 AT3G19430.1 71.154 52 13 1 21 72 2 51 9.54e-15 77.8
Msa0279330 AT5G60520.1 34.307 274 99 8 46 238 59 332 2.66e-42 155
Msa0279330 AT5G54370.1 31.111 270 107 8 43 233 33 302 2.43e-36 139
Msa0279330 AT4G27400.1 30.667 300 127 9 13 233 8 305 1.26e-34 134
Msa0279330 AT5G60530.1 30.769 286 112 10 30 233 147 428 3.39e-34 135
Msa0279330 AT1G54890.1 28.221 326 138 13 8 251 15 326 2.10e-28 116

Find 137 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATTAATGGTTCAAATTT+TGG 0.079756 2_3:+13168334 Msa0279330:CDS
TGTTCCATGTTGTAACATTT+TGG 0.105825 2_3:-13173870 None:intergenic
TGTGGTGTTGAATGGCTTTC+AGG 0.178500 2_3:-13173576 None:intergenic
TCTTTCAATGGCTAAATTAA+TGG 0.188419 2_3:+13168322 None:intergenic
CTTGTACTTCTTTATCTTGC+AGG 0.216951 2_3:-13168438 None:intergenic
CTCGAGTCTTCTTCAGTTAT+AGG 0.222865 2_3:-13169161 None:intergenic
TTTGTACTTCTTTATCTTGC+AGG 0.230223 2_3:-13173121 None:intergenic
GTACAAACATTGCTATAATT+TGG 0.238501 2_3:+13173137 Msa0279330:CDS
TATTGGAACTGTGGAGAATT+TGG 0.242978 2_3:+13169433 Msa0279330:CDS
CTTGCAAACCTATTTGTGTT+GGG 0.268744 2_3:+13173211 Msa0279330:CDS
CATAGTTAGGTTTATATGTT+TGG 0.296754 2_3:-13169283 None:intergenic
GGTGAGCTATGGGGTGTAGA+AGG 0.297354 2_3:-13173264 None:intergenic
CATCTAGTGTGTCCATTGTT+AGG 0.297898 2_3:+13169072 Msa0279330:CDS
TCGAGTCTTCTTCAGTTATA+GGG 0.313842 2_3:-13169160 None:intergenic
GACTCGAGGATTCACAATTA+TGG 0.316207 2_3:+13169176 Msa0279330:CDS
AATGGATTAAACAAAGATAT+TGG 0.344934 2_3:+13169416 Msa0279330:CDS
TATAAGGACTTACAGCAAAT+AGG 0.363548 2_3:-13168536 None:intergenic
AACATTATTGTTGAAGTTGA+AGG 0.367844 2_3:+13169110 Msa0279330:CDS
TGCCAAGACCCTCGTTTCAT+TGG 0.369732 2_3:+13168765 Msa0279330:CDS
CATTCCACAGTACAATCATT+AGG 0.370504 2_3:-13173183 None:intergenic
GACAATCACCAACTCTTCCT+TGG 0.372957 2_3:+13168945 Msa0279330:CDS
GTGAGCTTTGTGGTGTTGAA+TGG 0.375748 2_3:-13173584 None:intergenic
TTCACACGACTCACATAGTT+AGG 0.382367 2_3:-13169296 None:intergenic
TCATGATCTTTAGCAATTCC+AGG 0.396116 2_3:-13173084 None:intergenic
TTCAACAATAATGTTGTTTG+TGG 0.397237 2_3:-13169102 None:intergenic
GGAAGAGGATGTAGCGGAAG+AGG 0.397806 2_3:-13173685 None:intergenic
CGAATCAGAAGGTGCGAAAT+GGG 0.400701 2_3:+13169046 Msa0279330:intron
TCACGACCTTTACCAATTCC+AGG 0.401435 2_3:-13168401 None:intergenic
TGTTCTGTAGCACGTTTCAT+TGG 0.403463 2_3:+13169389 Msa0279330:CDS
CAAGACCCTCGTTTCATTGG+TGG 0.405639 2_3:+13168768 Msa0279330:CDS
GGATGTAGCGGAAGAGGAAG+AGG 0.410175 2_3:-13173679 None:intergenic
TGTGGTGTATGAGAGCTATT+AGG 0.414472 2_3:-13173345 None:intergenic
GCAGCTACTCCTCCTGGAAT+TGG 0.414510 2_3:+13168389 Msa0279330:CDS
CAATCATTAGGGCAAAACTT+AGG 0.416089 2_3:-13173171 None:intergenic
ACGAATCAGAAGGTGCGAAA+TGG 0.416928 2_3:+13169045 Msa0279330:intron
GTACAAGCATTGCTATAATT+CGG 0.418468 2_3:+13168454 Msa0279330:CDS
GGGTCTTGGCAAACAGCTCC+TGG 0.434624 2_3:-13174239 None:intergenic
GGTGGGTTATGTGGTGCAGA+AGG 0.435689 2_3:-13173726 None:intergenic
ATTGCTAAAGATCATGAGTA+TGG 0.436351 2_3:+13173090 Msa0279330:CDS
AGATGAAGAAGAAGAGGAAG+AGG 0.437778 2_3:-13173778 None:intergenic
TGCCAAGACCCACGTTTCAT+TGG 0.439506 2_3:+13174251 Msa0279330:CDS
GGGTCTTGGCAAACAGCTCC+TGG 0.441504 2_3:-13168753 None:intergenic
GGTGTAGATGGTGAAGGTGG+TGG 0.444770 2_3:-13173465 None:intergenic
GTGGAAGCAGCTACTCCTCC+TGG 0.450889 2_3:+13168383 Msa0279330:CDS
CAAGACCCACGTTTCATTGG+TGG 0.452307 2_3:+13174254 Msa0279330:CDS
CCACGTTTCATTGGTGGTGA+TGG 0.452569 2_3:+13174260 Msa0279330:CDS
TCTTGCAAACCTATTTGTGT+TGG 0.453696 2_3:+13173210 Msa0279330:CDS
TGATGAAGAAGAAGAGGATG+AGG 0.454697 2_3:-13173307 None:intergenic
TCTCCTTGTGCTAGTGGCAG+TGG 0.455412 2_3:+13168364 Msa0279330:CDS
CCACTTGTGCAGCTCATGCT+AGG 0.463543 2_3:-13169461 None:intergenic
ATCTAGTGTGTCCATTGTTA+GGG 0.463785 2_3:+13169073 Msa0279330:CDS
AGAAGCAGAAGAAGATGAAG+AGG 0.466049 2_3:-13173652 None:intergenic
CCTGCTTGTGCTAGTGGCAG+TGG 0.466128 2_3:+13173044 Msa0279330:intron
AATCATTAGGGCAAAACTTA+GGG 0.466242 2_3:-13173170 None:intergenic
TTGCAAACCTATTTGTGTTG+GGG 0.467437 2_3:+13173212 Msa0279330:CDS
GTGTAGATGGTGAAGGTGGT+GGG 0.467942 2_3:-13173464 None:intergenic
CACCAATGAAACGTGGGTCT+TGG 0.476312 2_3:-13174253 None:intergenic
AGAAGCTGATGAAGAAGAAG+AGG 0.477073 2_3:-13173313 None:intergenic
ATTCCACAGTACAATCATTA+GGG 0.482503 2_3:-13173182 None:intergenic
GTTAGGCGATGAAGAGGAAG+AGG 0.483400 2_3:-13173700 None:intergenic
AGAAGAAGATGAAGAAGAAG+AGG 0.483584 2_3:-13173784 None:intergenic
AGAAGATGAAGATGAAGAAG+AGG 0.485133 2_3:-13173517 None:intergenic
GTCAATTCTCCTTGTGCTAG+TGG 0.485779 2_3:+13168358 Msa0279330:CDS
TGTGGTGCAGAAGGGTTGTT+AGG 0.488776 2_3:-13173717 None:intergenic
TTGTGCAGCTCATGCTAGGG+AGG 0.490254 2_3:-13169457 None:intergenic
CAAAGAGAATAACAATGGAT+TGG 0.496097 2_3:-13168923 None:intergenic
TGTAGAAGGGCTTGATGAAG+AGG 0.497411 2_3:-13173433 None:intergenic
AAACGTGCTACAGAACAATC+TGG 0.501699 2_3:-13169383 None:intergenic
TTAGATGAAGATGGTGTAGA+TGG 0.507062 2_3:-13173477 None:intergenic
TATGTGAGTCGTGTGAATAT+TGG 0.508037 2_3:+13169302 Msa0279330:CDS
CACCAATGAAACGAGGGTCT+TGG 0.512112 2_3:-13168767 None:intergenic
AATTGGTAAAGGTCGTGAGC+AGG 0.512231 2_3:+13168406 Msa0279330:CDS
GTGAGCATTTATGTGGAGGT+TGG 0.512753 2_3:-13174339 None:intergenic
GAAGCAGCTACTACTCCTCC+TGG 0.515107 2_3:+13173066 Msa0279330:CDS
AGATGAAGAAGAGGATGAAG+AGG 0.519145 2_3:-13173508 None:intergenic
GAAGATGGTGTAGACGATGA+AGG 0.530829 2_3:-13173609 None:intergenic
TTTGGGCTCCAAGGAAGAGT+TGG 0.531333 2_3:-13168953 None:intergenic
AGTTGTTGTCTTTCTTGCCA+TGG 0.531595 2_3:-13174298 None:intergenic
TGCAAACCTATTTGTGTTGG+GGG 0.533814 2_3:+13173213 Msa0279330:CDS
TGATGATGAAGGTGAGCTAT+GGG 0.533957 2_3:-13173274 None:intergenic
ATGATGATGAAGGTGAGCTA+TGG 0.536677 2_3:-13173275 None:intergenic
AATGAAGTGAGTGGTGTGTT+GGG 0.539144 2_3:+13169260 Msa0279330:CDS
CACTTGTGCAGCTCATGCTA+GGG 0.541310 2_3:-13169460 None:intergenic
ACTCCTCCTGGAATTGGTAA+AGG 0.543750 2_3:+13168395 Msa0279330:CDS
GAAGAGGAAGAGGAAGATGA+AGG 0.544031 2_3:-13173768 None:intergenic
CACTCGACAGTACAATCATA+AGG 0.545781 2_3:-13168500 None:intergenic
GTGAGCTATGGGGTGTAGAA+GGG 0.550496 2_3:-13173263 None:intergenic
GAAGACGAATTAGATGAAGA+TGG 0.552197 2_3:-13173486 None:intergenic
GCACGTTTCATTGGAAACAA+TGG 0.555005 2_3:+13169398 Msa0279330:CDS
GTAGATGATGAAGACGGCGG+TGG 0.555826 2_3:-13173744 None:intergenic
CAATCATAAGGACAAGACTT+AGG 0.557878 2_3:-13168488 None:intergenic
CAATGAAGTGAGCATTTATG+TGG 0.557976 2_3:-13174346 None:intergenic
ACATGAAAAGAGACTTCACC+TGG 0.558398 2_3:+13168898 Msa0279330:CDS
CAATGAAGTGAGTGGTGTGT+TGG 0.560871 2_3:+13169259 Msa0279330:CDS
GATGAAGGTGGTGAGCTTTG+TGG 0.565359 2_3:-13173594 None:intergenic
CTATGGGGTGTAGAAGGGAT+AGG 0.568371 2_3:-13173258 None:intergenic
AGGGTTGTTAGGCGATGAAG+AGG 0.571412 2_3:-13173706 None:intergenic
GATGAAGAAGATGATGATGA+AGG 0.576996 2_3:-13173285 None:intergenic
GTGGGTTATGTGGTGCAGAA+GGG 0.577036 2_3:-13173725 None:intergenic
AAAATGCCTATAATGGGAGG+TGG 0.578337 2_3:+13169329 Msa0279330:CDS
TGTGGAAGTTTCCCTAACAA+TGG 0.578770 2_3:-13169084 None:intergenic
GAAGACGGCGGTGGGTTATG+TGG 0.580403 2_3:-13173735 None:intergenic
TGAAGAGGAAGAGGATGTAG+CGG 0.596250 2_3:-13173691 None:intergenic
CTTCCACTGCCACTAGCACA+AGG 0.603316 2_3:-13168367 None:intergenic
ATTGTCAAAGAGAATAACAA+TGG 0.604409 2_3:-13168928 None:intergenic
GTGTAGAAGATGCATTGTGT+TGG 0.605247 2_3:-13173371 None:intergenic
ATTGGTAAAGGTCGTGAGCA+GGG 0.605845 2_3:+13168407 Msa0279330:CDS
ATTGCAGCGTGTGACAAACC+AGG 0.606428 2_3:+13168735 Msa0279330:intron
ATTGCAGAGTGTGACAAACC+AGG 0.606428 2_3:+13174221 Msa0279330:intron
GGGATAGGATAATCATGTGA+AGG 0.615144 2_3:-13173243 None:intergenic
AAACAAAGATATTGGAACTG+TGG 0.625848 2_3:+13169424 Msa0279330:CDS
GGAGGTTGGAATCAGATACA+AGG 0.635514 2_3:-13174325 None:intergenic
CCATCACCACCAATGAAACG+TGG 0.636468 2_3:-13174260 None:intergenic
TGTGCAGCTCATGCTAGGGA+GGG 0.638901 2_3:-13169456 None:intergenic
TCTCTAAGCAATGAAGTGAG+TGG 0.638937 2_3:+13169251 Msa0279330:CDS
GATGGTGTAGATGGTGAAGG+TGG 0.643290 2_3:-13173468 None:intergenic
TAGATGATGAAGACGGCGGT+GGG 0.643926 2_3:-13173743 None:intergenic
GAATTAGATGAAGAAGAAGA+TGG 0.645143 2_3:-13173624 None:intergenic
CTACCCAAAATGTTACAACA+TGG 0.650254 2_3:+13173866 Msa0279330:CDS
AATAACAATGGATTGGACCC+AGG 0.651954 2_3:-13168916 None:intergenic
GAAGGTGTAGATGATGAAGA+CGG 0.654847 2_3:-13173750 None:intergenic
AACACAAATAGGTTTGCAAG+AGG 0.662982 2_3:-13173208 None:intergenic
CCATCACCACCAATGAAACG+AGG 0.665903 2_3:-13168774 None:intergenic
CTATAACTGAAGAAGACTCG+AGG 0.674314 2_3:+13169162 Msa0279330:CDS
GAAGATGGTGTAGATGGTGA+AGG 0.675596 2_3:-13173471 None:intergenic
GATGGTGTAGACGATGAAGG+TGG 0.678311 2_3:-13173606 None:intergenic
ACAGCAAATAGGTTTGCATG+AGG 0.683375 2_3:-13168525 None:intergenic
CATCACCACCAATGAAACGT+GGG 0.685992 2_3:-13174259 None:intergenic
TGAAGTGAGCATTTATGTGG+AGG 0.693659 2_3:-13174343 None:intergenic
TTGCCCTAATGATTGTACTG+TGG 0.699134 2_3:+13173179 Msa0279330:CDS
GACGACGATGATGATGAAGA+TGG 0.699240 2_3:-13173393 None:intergenic
CATCACCACCAATGAAACGA+GGG 0.709865 2_3:-13168773 None:intergenic
GATGATGAAGGTGAGCTATG+GGG 0.735908 2_3:-13173273 None:intergenic
TGATCTTTAGCAATTCCAGG+AGG 0.743000 2_3:-13173081 None:intergenic
CGACCTTTACCAATTCCAGG+AGG 0.745098 2_3:-13168398 None:intergenic
CATGAAAAGAGACTTCACCT+GGG 0.750322 2_3:+13168899 Msa0279330:CDS
GGTGTAGATGATGAAGACGG+CGG 0.803718 2_3:-13173747 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAATTGATATATTTATA+GGG - chr2_3:13170238-13170257 None:intergenic 10.0%
!! TGAAAAATTGATATATTTAT+AGG - chr2_3:13170239-13170258 None:intergenic 10.0%
!!! GTTATTTTTAATATGTTTTT+CGG - chr2_3:13170679-13170698 None:intergenic 10.0%
!!! GATATTTTTTTTTTTTTTTG+GGG - chr2_3:13170777-13170796 None:intergenic 10.0%
!! TAAAAAAAAAACTGAAATTA+TGG + chr2_3:13171861-13171880 Msa0279330:intron 10.0%
!! AAAAAAAAAACTGAAATTAT+GGG + chr2_3:13171862-13171881 Msa0279330:intron 10.0%
!! CCTTAAAAAATAATTATATA+AGG - chr2_3:13171951-13171970 None:intergenic 10.0%
!!! CCTTATATAATTATTTTTTA+AGG + chr2_3:13171948-13171967 Msa0279330:intron 10.0%
!!! TAAATATGAATTTTTATTGT+TGG - chr2_3:13172171-13172190 None:intergenic 10.0%
!! AATTTCATTAAAAAATATGA+AGG + chr2_3:13172259-13172278 Msa0279330:intron 10.0%
!! AAAAAAGTTAAATAAGTAAA+CGG - chr2_3:13172402-13172421 None:intergenic 10.0%
!!! TAAATTAATGGTTCAAATTT+TGG + chr2_3:13168334-13168353 Msa0279330:CDS 15.0%
!! GATGTAACAAAATATATATA+AGG - chr2_3:13168555-13168574 None:intergenic 15.0%
!!! TCAAATAAATTGAATGATTT+TGG + chr2_3:13169622-13169641 Msa0279330:intron 15.0%
!!! AAGATTATCAAGATTTTAAA+AGG - chr2_3:13170052-13170071 None:intergenic 15.0%
!! AAATAAGAAGTTTACTTAAA+AGG - chr2_3:13170304-13170323 None:intergenic 15.0%
!!! ATGAATTTTTATATTTTTGG+CGG + chr2_3:13170401-13170420 Msa0279330:intron 15.0%
!!! AAAATTTTTCTTTGACTTTT+AGG - chr2_3:13170574-13170593 None:intergenic 15.0%
!! TTAGAACCAAAATAAATATT+TGG - chr2_3:13171761-13171780 None:intergenic 15.0%
!! ATCAAATGTTGATATATTTA+AGG + chr2_3:13172373-13172392 Msa0279330:intron 15.0%
!! TCAAATGTTGATATATTTAA+GGG + chr2_3:13172374-13172393 Msa0279330:intron 15.0%
!!! AAATTTTAGGATAATTGCTA+AGG + chr2_3:13169133-13169152 Msa0279330:CDS 20.0%
!!! AATGGATTAAACAAAGATAT+TGG + chr2_3:13169416-13169435 Msa0279330:CDS 20.0%
!! TTTAATTGTCTAAAGGATAT+TGG + chr2_3:13169547-13169566 Msa0279330:intron 20.0%
!! TATCAATAAATCATGCAATT+CGG - chr2_3:13170116-13170135 None:intergenic 20.0%
!! CATAAAATAAAGACTAAAAG+TGG + chr2_3:13170528-13170547 Msa0279330:intron 20.0%
!! CAAAATATTCAGATTGAAAA+AGG + chr2_3:13171030-13171049 Msa0279330:intron 20.0%
!! ATTGAAAAAGGAAAATTCTA+TGG + chr2_3:13171042-13171061 Msa0279330:intron 20.0%
!! CGGAAAATGTAATTATATTT+GGG - chr2_3:13171477-13171496 None:intergenic 20.0%
!!! CCAAATATAATTACATTTTC+CGG + chr2_3:13171475-13171494 Msa0279330:intron 20.0%
!!! AAGATAAATTTTTACGTAAC+CGG - chr2_3:13171497-13171516 None:intergenic 20.0%
!! TATATACAAAAATTACGAGA+GGG - chr2_3:13171662-13171681 None:intergenic 20.0%
!! ATATATACAAAAATTACGAG+AGG - chr2_3:13171663-13171682 None:intergenic 20.0%
!!! ATTCCACCAAATATTTATTT+TGG + chr2_3:13171752-13171771 Msa0279330:intron 20.0%
!!! TATTTTGGTTCTAATGAATA+AGG + chr2_3:13171767-13171786 Msa0279330:intron 20.0%
!!! CAAATTTGATTATTTTTTGG+TGG - chr2_3:13171903-13171922 None:intergenic 20.0%
!!! CAGCAAATTTGATTATTTTT+TGG - chr2_3:13171906-13171925 None:intergenic 20.0%
!! TTTATTGAGTAAATAATCGT+AGG + chr2_3:13171978-13171997 Msa0279330:intron 20.0%
!! AAATAAAATCCAAGTAAAGT+TGG + chr2_3:13172062-13172081 Msa0279330:intron 20.0%
!! TCATTAAAAAATATGAAGGT+TGG + chr2_3:13172263-13172282 Msa0279330:intron 20.0%
!!! AAAAGTATGAACTATTTTCA+TGG + chr2_3:13172300-13172319 Msa0279330:intron 20.0%
!!! TAAAATATTCTTTGGTCTTT+TGG - chr2_3:13172343-13172362 None:intergenic 20.0%
!!! TAGTCTTCTAAAATATTCTT+TGG - chr2_3:13172351-13172370 None:intergenic 20.0%
!! CAAATGTTGATATATTTAAG+GGG + chr2_3:13172375-13172394 Msa0279330:intron 20.0%
!!! TAAATTCTTTGTTTTTTGTG+AGG + chr2_3:13172463-13172482 Msa0279330:intron 20.0%
!!! AAATTCTTTGTTTTTTGTGA+GGG + chr2_3:13172464-13172483 Msa0279330:intron 20.0%
!!! TGAATTATTTGTTTTTTGTG+AGG + chr2_3:13172632-13172651 Msa0279330:intron 20.0%
!!! GAATTATTTGTTTTTTGTGA+GGG + chr2_3:13172633-13172652 Msa0279330:intron 20.0%
!! TCAACTAAATTAATATCTGA+AGG + chr2_3:13172823-13172842 Msa0279330:intron 20.0%
! ATTGTCAAAGAGAATAACAA+TGG - chr2_3:13168931-13168950 None:intergenic 25.0%
!! TTCAACAATAATGTTGTTTG+TGG - chr2_3:13169105-13169124 None:intergenic 25.0%
! AACATTATTGTTGAAGTTGA+AGG + chr2_3:13169110-13169129 Msa0279330:CDS 25.0%
!! TTGAAGTTGAAGGAAATTTT+AGG + chr2_3:13169120-13169139 Msa0279330:CDS 25.0%
! CATAGTTAGGTTTATATGTT+TGG - chr2_3:13169286-13169305 None:intergenic 25.0%
! CAGATGATTTAATTGTCTAA+AGG + chr2_3:13169540-13169559 Msa0279330:intron 25.0%
! GGTTTAACCTTAAAAAATTG+TGG + chr2_3:13169643-13169662 Msa0279330:intron 25.0%
!!! CATGAATCCACAATTTTTTA+AGG - chr2_3:13169653-13169672 None:intergenic 25.0%
! TTCCTTTCGTCTAAAAATAT+TGG - chr2_3:13169826-13169845 None:intergenic 25.0%
!! ATAAAGTGTTACAAAGACTT+TGG + chr2_3:13169861-13169880 Msa0279330:intron 25.0%
!! TAAAGTGTTACAAAGACTTT+GGG + chr2_3:13169862-13169881 Msa0279330:intron 25.0%
!!! TTTATGTTGTTTTTGAGACT+TGG + chr2_3:13169992-13170011 Msa0279330:intron 25.0%
! AACACTTGAAGTAATTATAG+AGG - chr2_3:13170200-13170219 None:intergenic 25.0%
!! AGTGAAAATGGAAAACTTTT+GGG - chr2_3:13170271-13170290 None:intergenic 25.0%
!! AAGTGAAAATGGAAAACTTT+TGG - chr2_3:13170272-13170291 None:intergenic 25.0%
!! AAGTTTTCCATTTTCACTTT+TGG + chr2_3:13170273-13170292 Msa0279330:intron 25.0%
!! TTAGTAGACATTTGAAGTAA+GGG - chr2_3:13170651-13170670 None:intergenic 25.0%
!! TTTAGTAGACATTTGAAGTA+AGG - chr2_3:13170652-13170671 None:intergenic 25.0%
! CATTCAAGTAATTGAAATCA+AGG + chr2_3:13170740-13170759 Msa0279330:intron 25.0%
! CAATTTATCTGAACATATGT+TGG - chr2_3:13170855-13170874 None:intergenic 25.0%
! AATATGCATTATCCTAAGTT+AGG + chr2_3:13170894-13170913 Msa0279330:intron 25.0%
! ATATGCATTATCCTAAGTTA+GGG + chr2_3:13170895-13170914 Msa0279330:intron 25.0%
!! AGTCATGAAAATGACTTTTA+TGG + chr2_3:13171068-13171087 Msa0279330:intron 25.0%
!! TGATGAATTGATGATACTAT+GGG - chr2_3:13171170-13171189 None:intergenic 25.0%
!! TTGATGAATTGATGATACTA+TGG - chr2_3:13171171-13171190 None:intergenic 25.0%
! TGTTACACTTAAAACAAAGT+AGG - chr2_3:13171225-13171244 None:intergenic 25.0%
! CCGGAAAATGTAATTATATT+TGG - chr2_3:13171478-13171497 None:intergenic 25.0%
! GAACCAAAATAAATATTTGG+TGG - chr2_3:13171758-13171777 None:intergenic 25.0%
!!! TAATCAAATTTGCTGTTTGT+TGG + chr2_3:13171911-13171930 Msa0279330:intron 25.0%
!! TTATTTCTTCCAACTTTACT+TGG - chr2_3:13172074-13172093 None:intergenic 25.0%
! TAAAATCTACATTGTTTCCT+GGG + chr2_3:13172431-13172450 Msa0279330:intron 25.0%
! AGAATTTAGATTAATTTCCC+AGG - chr2_3:13172451-13172470 None:intergenic 25.0%
! TTTGATTAAAACGAGGTAAA+GGG - chr2_3:13172711-13172730 None:intergenic 25.0%
!! AAAAACAGCATATTTTCACA+TGG - chr2_3:13172854-13172873 None:intergenic 25.0%
!! AAAGAACAATTGCCTTTTAT+AGG - chr2_3:13172922-13172941 None:intergenic 25.0%
! TATAAAAGGCAATTGTTCTT+TGG + chr2_3:13172921-13172940 Msa0279330:intron 25.0%
! AAGCTAGAAAATATTTCCAA+TGG + chr2_3:13172990-13173009 Msa0279330:intron 25.0%
!!! TCAAATTATGGTTCAAGTTT+TGG + chr2_3:13173014-13173033 Msa0279330:intron 25.0%
! GTACAAACATTGCTATAATT+TGG + chr2_3:13173137-13173156 Msa0279330:CDS 25.0%
! ACATCTCAAATTTGCATTAA+AGG + chr2_3:13173985-13174004 Msa0279330:intron 25.0%
! AAAGGATCTTACATAAAACT+TGG + chr2_3:13174003-13174022 Msa0279330:intron 25.0%
! GTACAAGCATTGCTATAATT+CGG + chr2_3:13168454-13168473 Msa0279330:CDS 30.0%
TATAAGGACTTACAGCAAAT+AGG - chr2_3:13168539-13168558 None:intergenic 30.0%
CATCTCAAGATTTACATTGA+AGG + chr2_3:13168571-13168590 Msa0279330:intron 30.0%
TGAAGGTCTTACATAAAACT+TGG + chr2_3:13168588-13168607 Msa0279330:intron 30.0%
! TGATTTTTGCATGATTACAG+TGG + chr2_3:13168622-13168641 Msa0279330:intron 30.0%
CAAAGAGAATAACAATGGAT+TGG - chr2_3:13168926-13168945 None:intergenic 30.0%
!!! ATCCCATGTTGATGTTTTTT+GGG - chr2_3:13168973-13168992 None:intergenic 30.0%
ATGAGCAAAACAATCATCTT+TGG - chr2_3:13169207-13169226 None:intergenic 30.0%
! TGTTTTGCTCATCTTGATTT+AGG + chr2_3:13169215-13169234 Msa0279330:intron 30.0%
! GTTTTGCTCATCTTGATTTA+GGG + chr2_3:13169216-13169235 Msa0279330:intron 30.0%
AAACAAAGATATTGGAACTG+TGG + chr2_3:13169424-13169443 Msa0279330:CDS 30.0%
!!! AAGCATTTTGAAACTTAGAG+TGG - chr2_3:13169772-13169791 None:intergenic 30.0%
!!! GACCAATATTTTTAGACGAA+AGG + chr2_3:13169821-13169840 Msa0279330:intron 30.0%
! AAAGTGTTACAAAGACTTTG+GGG + chr2_3:13169863-13169882 Msa0279330:intron 30.0%
! CCTATTTTCACTGTGAAATT+CGG - chr2_3:13169908-13169927 None:intergenic 30.0%
!! CTAAAAACACAGTTTTTCAG+AGG + chr2_3:13169939-13169958 Msa0279330:intron 30.0%
GCTTAGAAAACATTACAAGT+TGG - chr2_3:13170030-13170049 None:intergenic 30.0%
!!! AGTTTTAGAGAAGTTGTTCA+TGG - chr2_3:13170177-13170196 None:intergenic 30.0%
! TGAAAATGGAAAACTTTTGG+GGG - chr2_3:13170269-13170288 None:intergenic 30.0%
! GTGAAAATGGAAAACTTTTG+GGG - chr2_3:13170270-13170289 None:intergenic 30.0%
ACTCTTATAATCCCTAACTT+AGG - chr2_3:13170909-13170928 None:intergenic 30.0%
TAAGTTAGGGATTATAAGAG+TGG + chr2_3:13170908-13170927 Msa0279330:intron 30.0%
TGGATTTATCGTTAATTGCA+AGG + chr2_3:13170928-13170947 Msa0279330:intron 30.0%
! GATGAATTGATGATACTATG+GGG - chr2_3:13171169-13171188 None:intergenic 30.0%
TCTTAAGTGTTACACTTTGT+GGG - chr2_3:13171249-13171268 None:intergenic 30.0%
ATTATATTTGGGAGCTTCTA+TGG - chr2_3:13171466-13171485 None:intergenic 30.0%
TCAATGATGTATGATGCATA+TGG + chr2_3:13171531-13171550 Msa0279330:intron 30.0%
TTCTAATGAATAAGGTCCTA+AGG + chr2_3:13171775-13171794 Msa0279330:intron 30.0%
! CATTGCAAGTTTTCTTTAAG+CGG - chr2_3:13171826-13171845 None:intergenic 30.0%
CTAAACATAATCAGTTGAAG+AGG + chr2_3:13172013-13172032 Msa0279330:intron 30.0%
CTAAAATCTACATTGTTTCC+TGG + chr2_3:13172430-13172449 Msa0279330:intron 30.0%
AGGGTCAAAATGAAATTAAG+TGG + chr2_3:13172483-13172502 Msa0279330:intron 30.0%
! AAATCCCATTTCCTTATTTC+CGG + chr2_3:13172520-13172539 Msa0279330:intron 30.0%
!! TTTTGTTTAACCCGGAAATA+AGG - chr2_3:13172534-13172553 None:intergenic 30.0%
!! TAAAGGGATTTTGTTTAACC+CGG - chr2_3:13172542-13172561 None:intergenic 30.0%
TTGATTAAAACGAGGTAAAG+GGG - chr2_3:13172710-13172729 None:intergenic 30.0%
CTTTGATTAAAACGAGGTAA+AGG - chr2_3:13172712-13172731 None:intergenic 30.0%
!! ATGTCACTTTGATTAAAACG+AGG - chr2_3:13172718-13172737 None:intergenic 30.0%
ATTCTCTTCATGCCTATAAA+AGG + chr2_3:13172907-13172926 Msa0279330:intron 30.0%
ATTTCCAATGGCTCAAATTA+TGG + chr2_3:13173002-13173021 Msa0279330:intron 30.0%
ATTGCTAAAGATCATGAGTA+TGG + chr2_3:13173090-13173109 Msa0279330:CDS 30.0%
TTTGTACTTCTTTATCTTGC+AGG - chr2_3:13173124-13173143 None:intergenic 30.0%
AATCATTAGGGCAAAACTTA+GGG - chr2_3:13173173-13173192 None:intergenic 30.0%
ATTCCACAGTACAATCATTA+GGG - chr2_3:13173185-13173204 None:intergenic 30.0%
GAATTAGATGAAGAAGAAGA+TGG - chr2_3:13173627-13173646 None:intergenic 30.0%
! GTTCCATGTTGTAACATTTT+GGG - chr2_3:13173872-13173891 None:intergenic 30.0%
! TGTTCCATGTTGTAACATTT+TGG - chr2_3:13173873-13173892 None:intergenic 30.0%
ATTGAAGACTTACTGCAAAT+AGG - chr2_3:13173951-13173970 None:intergenic 30.0%
CTTGTACTTCTTTATCTTGC+AGG - chr2_3:13168441-13168460 None:intergenic 35.0%
CAATCATAAGGACAAGACTT+AGG - chr2_3:13168491-13168510 None:intergenic 35.0%
!!! GGAATCACTTTTTACTTCCA+TGG + chr2_3:13168795-13168814 Msa0279330:intron 35.0%
!! CTATGAAATGAGCATTGATG+TGG - chr2_3:13168863-13168882 None:intergenic 35.0%
CACATCAATGCTCATTTCAT+AGG + chr2_3:13168861-13168880 Msa0279330:intron 35.0%
AGCCCAAAAAACATCAACAT+GGG + chr2_3:13168968-13168987 Msa0279330:CDS 35.0%
!!! CATCCCATGTTGATGTTTTT+TGG - chr2_3:13168974-13168993 None:intergenic 35.0%
ATCTAGTGTGTCCATTGTTA+GGG + chr2_3:13169073-13169092 Msa0279330:CDS 35.0%
TCGAGTCTTCTTCAGTTATA+GGG - chr2_3:13169163-13169182 None:intergenic 35.0%
TATGTGAGTCGTGTGAATAT+TGG + chr2_3:13169302-13169321 Msa0279330:CDS 35.0%
TGGAGCAAAAATGCCTATAA+TGG + chr2_3:13169322-13169341 Msa0279330:CDS 35.0%
GGAGCAAAAATGCCTATAAT+GGG + chr2_3:13169323-13169342 Msa0279330:CDS 35.0%
TATTGGAACTGTGGAGAATT+TGG + chr2_3:13169433-13169452 Msa0279330:CDS 35.0%
CTAAAGGATATTGGAACTGT+TGG + chr2_3:13169556-13169575 Msa0279330:intron 35.0%
CCGAATTTCACAGTGAAAAT+AGG + chr2_3:13169905-13169924 Msa0279330:intron 35.0%
AAAACACCTCGTGAAACAAT+TGG - chr2_3:13170088-13170107 None:intergenic 35.0%
AGAAGTTGTTCATGGTTTCA+AGG - chr2_3:13170169-13170188 None:intergenic 35.0%
! AGTGTCTCTGATTTCTTTTC+TGG + chr2_3:13170822-13170841 Msa0279330:intron 35.0%
!!! CTCTGATTTCTTTTCTGGTT+TGG + chr2_3:13170827-13170846 Msa0279330:intron 35.0%
CACACTGTAGTTATAACCTT+TGG - chr2_3:13170956-13170975 None:intergenic 35.0%
! CGTATTTTCCATATTTGGCA+TGG - chr2_3:13170995-13171014 None:intergenic 35.0%
CTTAAGTGTTACACTTTGTG+GGG - chr2_3:13171248-13171267 None:intergenic 35.0%
GTCTTAAGTGTTACACTTTG+TGG - chr2_3:13171250-13171269 None:intergenic 35.0%
TACAGGTACTACTTTATCGT+TGG - chr2_3:13171314-13171333 None:intergenic 35.0%
TTGCAACATCTTGAACTTAC+AGG - chr2_3:13171331-13171350 None:intergenic 35.0%
!! ATTTTAAGTCGCACTCAACA+TGG + chr2_3:13171689-13171708 Msa0279330:intron 35.0%
! ACATGGTCAGTTCATTTTGA+AGG + chr2_3:13171706-13171725 Msa0279330:intron 35.0%
TAATGAATAAGGTCCTAAGG+AGG + chr2_3:13171778-13171797 Msa0279330:intron 35.0%
ATCAAACATTTGACCTCCTT+AGG - chr2_3:13171794-13171813 None:intergenic 35.0%
! AATCCCATTTCCTTATTTCC+GGG + chr2_3:13172521-13172540 Msa0279330:intron 35.0%
TAACCCGGAAATAAGGAAAT+GGG - chr2_3:13172527-13172546 None:intergenic 35.0%
TTAACCCGGAAATAAGGAAA+TGG - chr2_3:13172528-13172547 None:intergenic 35.0%
TTAACCCCGGAAATAAGAAA+GGG - chr2_3:13172676-13172695 None:intergenic 35.0%
TTTAACCCCGGAAATAAGAA+AGG - chr2_3:13172677-13172696 None:intergenic 35.0%
CTCATGCATGATAAAGCTAT+TGG - chr2_3:13172777-13172796 None:intergenic 35.0%
TGAACCATAATTTGAGCCAT+TGG - chr2_3:13173009-13173028 None:intergenic 35.0%
TCATGATCTTTAGCAATTCC+AGG - chr2_3:13173087-13173106 None:intergenic 35.0%
CAATCATTAGGGCAAAACTT+AGG - chr2_3:13173174-13173193 None:intergenic 35.0%
CATTCCACAGTACAATCATT+AGG - chr2_3:13173186-13173205 None:intergenic 35.0%
AACACAAATAGGTTTGCAAG+AGG - chr2_3:13173211-13173230 None:intergenic 35.0%
TCTTGCAAACCTATTTGTGT+TGG + chr2_3:13173210-13173229 Msa0279330:CDS 35.0%
CTTGCAAACCTATTTGTGTT+GGG + chr2_3:13173211-13173230 Msa0279330:CDS 35.0%
TTGCAAACCTATTTGTGTTG+GGG + chr2_3:13173212-13173231 Msa0279330:CDS 35.0%
! GATGAAGAAGATGATGATGA+AGG - chr2_3:13173288-13173307 None:intergenic 35.0%
TTAGATGAAGATGGTGTAGA+TGG - chr2_3:13173480-13173499 None:intergenic 35.0%
GAAGACGAATTAGATGAAGA+TGG - chr2_3:13173489-13173508 None:intergenic 35.0%
AGAAGATGAAGATGAAGAAG+AGG - chr2_3:13173520-13173539 None:intergenic 35.0%
AGAAGAAGATGAAGAAGAAG+AGG - chr2_3:13173787-13173806 None:intergenic 35.0%
CTACCCAAAATGTTACAACA+TGG + chr2_3:13173866-13173885 Msa0279330:CDS 35.0%
!!! GGAATCACTTTTTACTTCCA+TGG + chr2_3:13168795-13168814 Msa0279330:intron 35.0%
CACTCGACAGTACAATCATA+AGG - chr2_3:13168503-13168522 None:intergenic 40.0%
ACAGCAAATAGGTTTGCATG+AGG - chr2_3:13168528-13168547 None:intergenic 40.0%
AGTTGTTGTCTTTCTTGCCA+TGG - chr2_3:13168815-13168834 None:intergenic 40.0%
!! TGAAATGAGCATTGATGTGG+AGG - chr2_3:13168860-13168879 None:intergenic 40.0%
ACATGAAAAGAGACTTCACC+TGG + chr2_3:13168898-13168917 Msa0279330:CDS 40.0%
CATGAAAAGAGACTTCACCT+GGG + chr2_3:13168899-13168918 Msa0279330:CDS 40.0%
!! AATAACAATGGATTGGACCC+AGG - chr2_3:13168919-13168938 None:intergenic 40.0%
!!! TTGATGTTTTTTGGGCTCCA+AGG - chr2_3:13168965-13168984 None:intergenic 40.0%
GAGCCCAAAAAACATCAACA+TGG + chr2_3:13168967-13168986 Msa0279330:CDS 40.0%
CATCTAGTGTGTCCATTGTT+AGG + chr2_3:13169072-13169091 Msa0279330:CDS 40.0%
TGTGGAAGTTTCCCTAACAA+TGG - chr2_3:13169087-13169106 None:intergenic 40.0%
CTCGAGTCTTCTTCAGTTAT+AGG - chr2_3:13169164-13169183 None:intergenic 40.0%
CTATAACTGAAGAAGACTCG+AGG + chr2_3:13169162-13169181 Msa0279330:CDS 40.0%
GACTCGAGGATTCACAATTA+TGG + chr2_3:13169176-13169195 Msa0279330:CDS 40.0%
TCTCTAAGCAATGAAGTGAG+TGG + chr2_3:13169251-13169270 Msa0279330:CDS 40.0%
AATGAAGTGAGTGGTGTGTT+GGG + chr2_3:13169260-13169279 Msa0279330:CDS 40.0%
TTCACACGACTCACATAGTT+AGG - chr2_3:13169299-13169318 None:intergenic 40.0%
! GCAAAAATGCCTATAATGGG+AGG + chr2_3:13169326-13169345 Msa0279330:CDS 40.0%
! AAAATGCCTATAATGGGAGG+TGG + chr2_3:13169329-13169348 Msa0279330:CDS 40.0%
! TCTTTTCCACCTCCCATTAT+AGG - chr2_3:13169338-13169357 None:intergenic 40.0%
AAACGTGCTACAGAACAATC+TGG - chr2_3:13169386-13169405 None:intergenic 40.0%
TGTTCTGTAGCACGTTTCAT+TGG + chr2_3:13169389-13169408 Msa0279330:CDS 40.0%
GCACGTTTCATTGGAAACAA+TGG + chr2_3:13169398-13169417 Msa0279330:CDS 40.0%
ACAAGTGGAATTGATGGAGA+AGG + chr2_3:13169476-13169495 Msa0279330:intron 40.0%
! AAATCATCTGCGTGCACTTT+TGG - chr2_3:13169530-13169549 None:intergenic 40.0%
!! CTTTGGGGTCGCTATAAAAT+TGG + chr2_3:13169878-13169897 Msa0279330:intron 40.0%
! GACAATTTCAGAAGTGCGTT+TGG - chr2_3:13170147-13170166 None:intergenic 40.0%
GGAGAGACCAAAAGTGAAAA+TGG - chr2_3:13170283-13170302 None:intergenic 40.0%
AACACTTGCCATGCCAAATA+TGG + chr2_3:13170984-13171003 Msa0279330:intron 40.0%
GCCAAATATGGAAAATACGC+AGG + chr2_3:13170996-13171015 Msa0279330:intron 40.0%
! GCCTGCGTATTTTCCATATT+TGG - chr2_3:13171000-13171019 None:intergenic 40.0%
!!! GGAAAATACGCAGGCTTTTT+TGG + chr2_3:13171005-13171024 Msa0279330:intron 40.0%
!!! AGTCGGGAAACTGACTTTTT+TGG - chr2_3:13171440-13171459 None:intergenic 40.0%
! ATCCCTTTACCTCGTTTTGA+AGG + chr2_3:13172553-13172572 Msa0279330:intron 40.0%
!! TCCCTTTACCTCGTTTTGAA+GGG + chr2_3:13172554-13172573 Msa0279330:intron 40.0%
! GCCTATCCCTTTCTTATTTC+CGG + chr2_3:13172667-13172686 Msa0279330:intron 40.0%
! CCTATCCCTTTCTTATTTCC+GGG + chr2_3:13172668-13172687 Msa0279330:intron 40.0%
! CTATCCCTTTCTTATTTCCG+GGG + chr2_3:13172669-13172688 Msa0279330:intron 40.0%
TAAAACGAGGTAAAGGGGAT+AGG - chr2_3:13172705-13172724 None:intergenic 40.0%
TGATCTTTAGCAATTCCAGG+AGG - chr2_3:13173084-13173103 None:intergenic 40.0%
TTGCCCTAATGATTGTACTG+TGG + chr2_3:13173179-13173198 Msa0279330:CDS 40.0%
TGCAAACCTATTTGTGTTGG+GGG + chr2_3:13173213-13173232 Msa0279330:CDS 40.0%
GGGATAGGATAATCATGTGA+AGG - chr2_3:13173246-13173265 None:intergenic 40.0%
! TGATGATGAAGGTGAGCTAT+GGG - chr2_3:13173277-13173296 None:intergenic 40.0%
! ATGATGATGAAGGTGAGCTA+TGG - chr2_3:13173278-13173297 None:intergenic 40.0%
TGTGGTGTATGAGAGCTATT+AGG - chr2_3:13173348-13173367 None:intergenic 40.0%
!!! GATGCATTGTGTTGGTTTTG+TGG - chr2_3:13173366-13173385 None:intergenic 40.0%
GTGTAGAAGATGCATTGTGT+TGG - chr2_3:13173374-13173393 None:intergenic 40.0%
!!! GTGGGTTTTTTGGTGTAGAA+GGG - chr2_3:13173449-13173468 None:intergenic 40.0%
AGATGAAGAAGAGGATGAAG+AGG - chr2_3:13173511-13173530 None:intergenic 40.0%
CGATGAAGAAGAAGAAGAAG+CGG - chr2_3:13173547-13173566 None:intergenic 40.0%
AGAAGCAGAAGAAGATGAAG+AGG - chr2_3:13173655-13173674 None:intergenic 40.0%
! GAAGGTGTAGATGATGAAGA+CGG - chr2_3:13173753-13173772 None:intergenic 40.0%
AGATGAAGAAGAAGAGGAAG+AGG - chr2_3:13173781-13173800 None:intergenic 40.0%
!! ACATCTAGCAGTTTTGTGTG+AGG - chr2_3:13173835-13173854 None:intergenic 40.0%
AGTTGTTGTCTTTCTTGCCA+TGG - chr2_3:13168815-13168834 None:intergenic 40.0%
GTCAATTCTCCTTGTGCTAG+TGG + chr2_3:13168358-13168377 Msa0279330:CDS 45.0%
ACTCCTCCTGGAATTGGTAA+AGG + chr2_3:13168395-13168414 Msa0279330:CDS 45.0%
TCACGACCTTTACCAATTCC+AGG - chr2_3:13168404-13168423 None:intergenic 45.0%
AATTGGTAAAGGTCGTGAGC+AGG + chr2_3:13168406-13168425 Msa0279330:CDS 45.0%
ATTGGTAAAGGTCGTGAGCA+GGG + chr2_3:13168407-13168426 Msa0279330:CDS 45.0%
CATCACCACCAATGAAACGA+GGG - chr2_3:13168776-13168795 None:intergenic 45.0%
GGAGGTTGGAATCAGATACA+AGG - chr2_3:13168842-13168861 None:intergenic 45.0%
!! ATGAGCATTGATGTGGAGGT+TGG - chr2_3:13168856-13168875 None:intergenic 45.0%
GACAATCACCAACTCTTCCT+TGG + chr2_3:13168945-13168964 Msa0279330:CDS 45.0%
! TCTGATTCGTTGAGGGTGAT+TGG - chr2_3:13169035-13169054 None:intergenic 45.0%
ATCACCCTCAACGAATCAGA+AGG + chr2_3:13169035-13169054 Msa0279330:intron 45.0%
! ACGAATCAGAAGGTGCGAAA+TGG + chr2_3:13169045-13169064 Msa0279330:intron 45.0%
! CGAATCAGAAGGTGCGAAAT+GGG + chr2_3:13169046-13169065 Msa0279330:intron 45.0%
CAATGAAGTGAGTGGTGTGT+TGG + chr2_3:13169259-13169278 Msa0279330:CDS 45.0%
AGCTGCACAAGTGGAATTGA+TGG + chr2_3:13169470-13169489 Msa0279330:intron 45.0%
TGCCTTCCAATTGTTTCACG+AGG + chr2_3:13170079-13170098 Msa0279330:intron 45.0%
CACCTCGTGAAACAATTGGA+AGG - chr2_3:13170084-13170103 None:intergenic 45.0%
CGTTAATTGCAAGGAGCCAA+AGG + chr2_3:13170937-13170956 Msa0279330:intron 45.0%
ATGCCACTGTACAAACAGTG+GGG - chr2_3:13171134-13171153 None:intergenic 45.0%
GATGCCACTGTACAAACAGT+GGG - chr2_3:13171135-13171154 None:intergenic 45.0%
TGATGCCACTGTACAAACAG+TGG - chr2_3:13171136-13171155 None:intergenic 45.0%
CCCCTTCAAAACGAGGTAAA+GGG - chr2_3:13172558-13172577 None:intergenic 45.0%
!!! CCCTTTACCTCGTTTTGAAG+GGG + chr2_3:13172555-13172574 Msa0279330:intron 45.0%
ACCCCTTCAAAACGAGGTAA+AGG - chr2_3:13172559-13172578 None:intergenic 45.0%
CCCGGAAATAAGAAAGGGAT+AGG - chr2_3:13172671-13172690 None:intergenic 45.0%
!! GGATAGGCTTTGTTTAACCC+CGG - chr2_3:13172689-13172708 None:intergenic 45.0%
ACGTGAAGAAGCTATACACG+TGG - chr2_3:13172879-13172898 None:intergenic 45.0%
TTTGTGCCCCCAACACAAAT+AGG - chr2_3:13173222-13173241 None:intergenic 45.0%
GATGATGAAGGTGAGCTATG+GGG - chr2_3:13173276-13173295 None:intergenic 45.0%
! GACGACGATGATGATGAAGA+TGG - chr2_3:13173396-13173415 None:intergenic 45.0%
TGTAGAAGGGCTTGATGAAG+AGG - chr2_3:13173436-13173455 None:intergenic 45.0%
!!! GGTGGGTTTTTTGGTGTAGA+AGG - chr2_3:13173450-13173469 None:intergenic 45.0%
GAAGATGGTGTAGATGGTGA+AGG - chr2_3:13173474-13173493 None:intergenic 45.0%
! TGTGGTGTTGAATGGCTTTC+AGG - chr2_3:13173579-13173598 None:intergenic 45.0%
! GTGAGCTTTGTGGTGTTGAA+TGG - chr2_3:13173587-13173606 None:intergenic 45.0%
GAAGATGGTGTAGACGATGA+AGG - chr2_3:13173612-13173631 None:intergenic 45.0%
TGAAGAGGAAGAGGATGTAG+CGG - chr2_3:13173694-13173713 None:intergenic 45.0%
GAAGAGGAAGAGGAAGATGA+AGG - chr2_3:13173771-13173790 None:intergenic 45.0%
ATTGCAGAGTGTGACAAACC+AGG + chr2_3:13174221-13174240 Msa0279330:intron 45.0%
CATCACCACCAATGAAACGT+GGG - chr2_3:13174262-13174281 None:intergenic 45.0%
GGAGGTTGGAATCAGATACA+AGG - chr2_3:13168842-13168861 None:intergenic 45.0%
!! AAAAAACTATAATTTATTTA+GGG - chr2_3:13170373-13170392 None:intergenic 5.0%
!! TAAAAAACTATAATTTATTT+AGG - chr2_3:13170374-13170393 None:intergenic 5.0%
!!! AATATGAATTTTTATATTTT+TGG + chr2_3:13170398-13170417 Msa0279330:intron 5.0%
!!! TGATATTTTTTTTTTTTTTT+GGG - chr2_3:13170778-13170797 None:intergenic 5.0%
!!! TTGATATTTTTTTTTTTTTT+TGG - chr2_3:13170779-13170798 None:intergenic 5.0%
!! AAAAAAAAAAAAAAATATCA+AGG + chr2_3:13170778-13170797 Msa0279330:intron 5.0%
!!! CTTATATAATTATTTTTTAA+GGG + chr2_3:13171949-13171968 Msa0279330:intron 5.0%
!!! TTTTTAATTCTAATTTTTTT+TGG + chr2_3:13172201-13172220 Msa0279330:intron 5.0%
!!! TTTTAATTCTAATTTTTTTT+GGG + chr2_3:13172202-13172221 Msa0279330:intron 5.0%
CGACCTTTACCAATTCCAGG+AGG - chr2_3:13168401-13168420 None:intergenic 50.0%
ATTGCAGCGTGTGACAAACC+AGG + chr2_3:13168735-13168754 Msa0279330:intron 50.0%
TGCCAAGACCCTCGTTTCAT+TGG + chr2_3:13168765-13168784 Msa0279330:CDS 50.0%
CACCAATGAAACGAGGGTCT+TGG - chr2_3:13168770-13168789 None:intergenic 50.0%
CAAGACCCTCGTTTCATTGG+TGG + chr2_3:13168768-13168787 Msa0279330:CDS 50.0%
CCATCACCACCAATGAAACG+AGG - chr2_3:13168777-13168796 None:intergenic 50.0%
!! CCTCGTTTCATTGGTGGTGA+TGG + chr2_3:13168774-13168793 Msa0279330:intron 50.0%
TTTGGGCTCCAAGGAAGAGT+TGG - chr2_3:13168956-13168975 None:intergenic 50.0%
! CGCACCTTCTGATTCGTTGA+GGG - chr2_3:13169042-13169061 None:intergenic 50.0%
! TCGCACCTTCTGATTCGTTG+AGG - chr2_3:13169043-13169062 None:intergenic 50.0%
CACTTGTGCAGCTCATGCTA+GGG - chr2_3:13169463-13169482 None:intergenic 50.0%
ACACCCCACTGTTTGTACAG+TGG + chr2_3:13171128-13171147 Msa0279330:intron 50.0%
GGAGCTTCTATGGTGAAGTC+GGG - chr2_3:13171456-13171475 None:intergenic 50.0%
GGGAGCTTCTATGGTGAAGT+CGG - chr2_3:13171457-13171476 None:intergenic 50.0%
!!! ACCTCGTTTTGAAGGGGTGA+CGG + chr2_3:13172561-13172580 Msa0279330:intron 50.0%
GTCAATCCTGCTTGTGCTAG+TGG + chr2_3:13173038-13173057 Msa0279330:intron 50.0%
CTATGGGGTGTAGAAGGGAT+AGG - chr2_3:13173261-13173280 None:intergenic 50.0%
GTGAGCTATGGGGTGTAGAA+GGG - chr2_3:13173266-13173285 None:intergenic 50.0%
!!! GGTGAAGGTGGTGGGTTTTT+TGG - chr2_3:13173459-13173478 None:intergenic 50.0%
GTGTAGATGGTGAAGGTGGT+GGG - chr2_3:13173467-13173486 None:intergenic 50.0%
GATGGTGTAGATGGTGAAGG+TGG - chr2_3:13173471-13173490 None:intergenic 50.0%
GATGAAGGTGGTGAGCTTTG+TGG - chr2_3:13173597-13173616 None:intergenic 50.0%
GATGGTGTAGACGATGAAGG+TGG - chr2_3:13173609-13173628 None:intergenic 50.0%
GTTAGGCGATGAAGAGGAAG+AGG - chr2_3:13173703-13173722 None:intergenic 50.0%
AGGGTTGTTAGGCGATGAAG+AGG - chr2_3:13173709-13173728 None:intergenic 50.0%
TGTGGTGCAGAAGGGTTGTT+AGG - chr2_3:13173720-13173739 None:intergenic 50.0%
! GTGGGTTATGTGGTGCAGAA+GGG - chr2_3:13173728-13173747 None:intergenic 50.0%
TAGATGATGAAGACGGCGGT+GGG - chr2_3:13173746-13173765 None:intergenic 50.0%
GGTGTAGATGATGAAGACGG+CGG - chr2_3:13173750-13173769 None:intergenic 50.0%
GTATGTCCTAATGCATGCCC+AGG + chr2_3:13173894-13173913 Msa0279330:intron 50.0%
AGTCAACCTCACATCCACCT+GGG - chr2_3:13173914-13173933 None:intergenic 50.0%
TGCCAAGACCCACGTTTCAT+TGG + chr2_3:13174251-13174270 Msa0279330:CDS 50.0%
CACCAATGAAACGTGGGTCT+TGG - chr2_3:13174256-13174275 None:intergenic 50.0%
CAAGACCCACGTTTCATTGG+TGG + chr2_3:13174254-13174273 Msa0279330:CDS 50.0%
CCATCACCACCAATGAAACG+TGG - chr2_3:13168777-13168796 None:intergenic 50.0%
!! CCACGTTTCATTGGTGGTGA+TGG + chr2_3:13174260-13174279 Msa0279330:CDS 50.0%
TCTCCTTGTGCTAGTGGCAG+TGG + chr2_3:13168364-13168383 Msa0279330:CDS 55.0%
CTTCCACTGCCACTAGCACA+AGG - chr2_3:13168370-13168389 None:intergenic 55.0%
GCAGCTACTCCTCCTGGAAT+TGG + chr2_3:13168389-13168408 Msa0279330:CDS 55.0%
CGTCAAAGGAGAGGGCAAGA+CGG - chr2_3:13169007-13169026 None:intergenic 55.0%
CGTCTTGCCCTCTCCTTTGA+CGG + chr2_3:13169005-13169024 Msa0279330:intron 55.0%
TGGTTCGCCGTCAAAGGAGA+GGG - chr2_3:13169015-13169034 None:intergenic 55.0%
! TTGGTTCGCCGTCAAAGGAG+AGG - chr2_3:13169016-13169035 None:intergenic 55.0%
!! GGTGATTGGTTCGCCGTCAA+AGG - chr2_3:13169021-13169040 None:intergenic 55.0%
TGTGCAGCTCATGCTAGGGA+GGG - chr2_3:13169459-13169478 None:intergenic 55.0%
TTGTGCAGCTCATGCTAGGG+AGG - chr2_3:13169460-13169479 None:intergenic 55.0%
CCACTTGTGCAGCTCATGCT+AGG - chr2_3:13169464-13169483 None:intergenic 55.0%
CCTAGCATGAGCTGCACAAG+TGG + chr2_3:13169461-13169480 Msa0279330:intron 55.0%
GAAGCAGCTACTACTCCTCC+TGG + chr2_3:13173066-13173085 Msa0279330:CDS 55.0%
GGTGAGCTATGGGGTGTAGA+AGG - chr2_3:13173267-13173286 None:intergenic 55.0%
GGTGTAGATGGTGAAGGTGG+TGG - chr2_3:13173468-13173487 None:intergenic 55.0%
! GGATGTAGCGGAAGAGGAAG+AGG - chr2_3:13173682-13173701 None:intergenic 55.0%
! GGAAGAGGATGTAGCGGAAG+AGG - chr2_3:13173688-13173707 None:intergenic 55.0%
!! GGTGGGTTATGTGGTGCAGA+AGG - chr2_3:13173729-13173748 None:intergenic 55.0%
GTAGATGATGAAGACGGCGG+TGG - chr2_3:13173747-13173766 None:intergenic 55.0%
TGTCCTAATGCATGCCCAGG+TGG + chr2_3:13173897-13173916 Msa0279330:intron 55.0%
CATCCACCTGGGCATGCATT+AGG - chr2_3:13173903-13173922 None:intergenic 55.0%
CAGTCAACCTCACATCCACC+TGG - chr2_3:13173915-13173934 None:intergenic 55.0%
GTGGAAGCAGCTACTCCTCC+TGG + chr2_3:13168383-13168402 Msa0279330:CDS 60.0%
GGGTCTTGGCAAACAGCTCC+TGG - chr2_3:13168756-13168775 None:intergenic 60.0%
GCCGTCACCCCTTCAAAACG+AGG - chr2_3:13172565-13172584 None:intergenic 60.0%
CCACTGCCACTAGCACAAGC+AGG - chr2_3:13173047-13173066 None:intergenic 60.0%
CCTGCTTGTGCTAGTGGCAG+TGG + chr2_3:13173044-13173063 Msa0279330:intron 60.0%
!! GAAGACGGCGGTGGGTTATG+TGG - chr2_3:13173738-13173757 None:intergenic 60.0%
TGCATGCCCAGGTGGATGTG+AGG + chr2_3:13173905-13173924 Msa0279330:intron 60.0%
GGGTCTTGGCAAACAGCTCC+TGG - chr2_3:13168756-13168775 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 13168329 13174353 13168329 ID=Msa0279330;Name=Msa0279330
chr2_3 mRNA 13168329 13174353 13168329 ID=Msa0279330-mRNA-1;Parent=Msa0279330;Name=Msa0279330-mRNA-1;_AED=0.19;_eAED=0.26;_QI=0|0|0|1|0.16|0.14|7|0|577
chr2_3 exon 13168329 13168545 13168329 ID=Msa0279330-mRNA-1:exon:5645;Parent=Msa0279330-mRNA-1
chr2_3 exon 13168742 13168789 13168742 ID=Msa0279330-mRNA-1:exon:5646;Parent=Msa0279330-mRNA-1
chr2_3 exon 13168883 13169005 13168883 ID=Msa0279330-mRNA-1:exon:5647;Parent=Msa0279330-mRNA-1
chr2_3 exon 13169057 13169197 13169057 ID=Msa0279330-mRNA-1:exon:5648;Parent=Msa0279330-mRNA-1
chr2_3 exon 13169237 13169479 13169237 ID=Msa0279330-mRNA-1:exon:5649;Parent=Msa0279330-mRNA-1
chr2_3 exon 13173058 13173893 13173058 ID=Msa0279330-mRNA-1:exon:5650;Parent=Msa0279330-mRNA-1
chr2_3 exon 13174228 13174353 13174228 ID=Msa0279330-mRNA-1:exon:5651;Parent=Msa0279330-mRNA-1
chr2_3 CDS 13168329 13168545 13168329 ID=Msa0279330-mRNA-1:cds;Parent=Msa0279330-mRNA-1
chr2_3 CDS 13168742 13168789 13168742 ID=Msa0279330-mRNA-1:cds;Parent=Msa0279330-mRNA-1
chr2_3 CDS 13168883 13169005 13168883 ID=Msa0279330-mRNA-1:cds;Parent=Msa0279330-mRNA-1
chr2_3 CDS 13169057 13169197 13169057 ID=Msa0279330-mRNA-1:cds;Parent=Msa0279330-mRNA-1
chr2_3 CDS 13169237 13169479 13169237 ID=Msa0279330-mRNA-1:cds;Parent=Msa0279330-mRNA-1
chr2_3 CDS 13173058 13173893 13173058 ID=Msa0279330-mRNA-1:cds;Parent=Msa0279330-mRNA-1
chr2_3 CDS 13174228 13174353 13174228 ID=Msa0279330-mRNA-1:cds;Parent=Msa0279330-mRNA-1
Gene Sequence

>Msa0279330

ATGGCTAAATTAATGGTTCAAATTTTGGTGTCAATTCTCCTTGTGCTAGTGGCAGTGGAAGCAGCTACTCCTCCTGGAATTGGTAAAGGTCGTGAGCAGGGTTATGCAACCTGCAAGATAAAGAAGTACAAGCATTGCTATAATTCGGTTCATGCATGTCCTAAGTCTTGTCCTTATGATTGTACTGTCGAGTGTGCCTCATGCAAACCTATTTGCTCGTGTGACAAACCAGGAGCTGTTTGCCAAGACCCTCGTTTCATTGGTGGTAGAAGAAACGAGAACATGAAAAGAGACTTCACCTGGGTCCAATCCATTGTTATTCTCTTTGACAATCACCAACTCTTCCTTGGAGCCCAAAAAACATCAACATGGGATGATTCTGTAGACCGTGCGAAATGGGAATCATCTAGTGTGTCCATTGTTAGGGAAACTTCCACAAACAACATTATTGTTGAAGTTGAAGGAAATTTTAGGATAATTGCTAAGGTTGTCCCTATAACTGAAGAAGACTCGAGGATTCACAATTATGGGTTCAAATTCTATTCTCTAAGCAATGAAGTGAGTGGTGTGTTGGGCCAAACATATAAACCTAACTATGTGAGTCGTGTGAATATTGGAGCAAAAATGCCTATAATGGGAGGTGGAAAAGAGTATCAAACTTCAAGCTTGCTCTCTCCAGATTGTTCTGTAGCACGTTTCATTGGAAACAATGGATTAAACAAAGATATTGGAACTGTGGAGAATTTGGCCCTCCCTAGCATGAGCTGCACAATGGCAGTGGAAGCAGCTACTACTCCTCCTGGAATTGCTAAAGATCATGAGTATGGTTATGCAACCTGCAAGATAAAGAAGTACAAACATTGCTATAATTTGGTGCATGTATGCCCTAAGTTTTGCCCTAATGATTGTACTGTGGAATGTGCCTCTTGCAAACCTATTTGTGTTGGGGGCACAAATCCTTCACATGATTATCCTATCCCTTCTACACCCCATAGCTCACCTTCATCATCATCTTCTTCATCCTCATCCTCTTCTTCTTCATCAGCTTCTTCTTCATCACCTAATAGCTCTCATACACCACAAAACCAACACAATGCATCTTCTACACCATCTTCATCATCATCGTCGTCGTCATCATCTTCTTCTTCCTCTTCATCAAGCCCTTCTACACCAAAAAACCCACCACCTTCACCATCTACACCATCTTCATCTAATTCGTCTTCCTCTTCATCCTCTTCTTCATCTTCATCTTCTTCTTCCGCTTCTTCTTCTTCTTCATCGTCGTCATCACCTGAAAGCCATTCAACACCACAAAGCTCACCACCTTCATCGTCTACACCATCTTCTTCTTCATCTAATTCATCATCCTCTTCATCTTCTTCTGCTTCTTCTTCCTCTTCCTCTTCCGCTACATCCTCTTCCTCTTCATCGCCTAACAACCCTTCTGCACCACATAACCCACCGCCGTCTTCATCATCTACACCTTCATCTTCCTCTTCCTCTTCTTCTTCATCTTCTTCTTCTTCGTCTTCAGCTTCTTCTTCAGCCTCACACAAAACTGCTAGATGTCAGAACAAGAACTACCCAAAATGTTACAACATGGAACATAGTGTGACAAACCAGGAGCTGTTTGCCAAGACCCACGTTTCATTGGTGGTGATGGAATCACTTTTTACTTCCATGGCAAGAAAGACAACAACTTCTGCCTTGTATCTGATTCCAACCTCCACATAA

Protein sequence

>Msa0279330

MAKLMVQILVSILLVLVAVEAATPPGIGKGREQGYATCKIKKYKHCYNSVHACPKSCPYDCTVECASCKPICSCDKPGAVCQDPRFIGGRRNENMKRDFTWVQSIVILFDNHQLFLGAQKTSTWDDSVDRAKWESSSVSIVRETSTNNIIVEVEGNFRIIAKVVPITEEDSRIHNYGFKFYSLSNEVSGVLGQTYKPNYVSRVNIGAKMPIMGGGKEYQTSSLLSPDCSVARFIGNNGLNKDIGTVENLALPSMSCTMAVEAATTPPGIAKDHEYGYATCKIKKYKHCYNLVHVCPKFCPNDCTVECASCKPICVGGTNPSHDYPIPSTPHSSPSSSSSSSSSSSSSSASSSSPNSSHTPQNQHNASSTPSSSSSSSSSSSSSSSSSPSTPKNPPPSPSTPSSSNSSSSSSSSSSSSSSSASSSSSSSSSPESHSTPQSSPPSSSTPSSSSSNSSSSSSSSASSSSSSSATSSSSSSPNNPSAPHNPPPSSSSTPSSSSSSSSSSSSSSSSASSSASHKTARCQNKNYPKCYNMEHSVTNQELFAKTHVSLVVMESLFTSMARKTTTSALYLIPTST*