Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279780 | XP_039686343.1 | 95.342 | 322 | 13 | 1 | 5 | 324 | 127 | 448 | 0.0 | 609 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279780 | sp|Q9XIQ7|FBT7_ARATH | 59.877 | 324 | 119 | 3 | 5 | 324 | 124 | 440 | 6.87e-124 | 365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279780 | A0A396J952 | 95.342 | 322 | 13 | 1 | 5 | 324 | 127 | 448 | 0.0 | 609 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047280 | Msa0279780 | 0.802429 | 5.634437e-49 | -8.615850e-47 |
| Msa0279780 | Msa1323990 | 0.803852 | 2.860723e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279780 | MtrunA17_Chr2g0293351 | 95.342 | 322 | 13 | 1 | 5 | 324 | 127 | 448 | 0.0 | 609 |
| Msa0279780 | MtrunA17_Chr2g0293371 | 91.925 | 322 | 24 | 1 | 5 | 324 | 37 | 358 | 0.0 | 585 |
| Msa0279780 | MtrunA17_Chr2g0293361 | 94.862 | 253 | 13 | 0 | 72 | 324 | 1 | 253 | 3.01e-174 | 483 |
| Msa0279780 | MtrunA17_Chr3g0079271 | 41.212 | 330 | 172 | 4 | 5 | 323 | 206 | 524 | 5.73e-70 | 227 |
| Msa0279780 | MtrunA17_Chr3g0098661 | 34.286 | 210 | 138 | 0 | 105 | 314 | 279 | 488 | 3.17e-36 | 136 |
| Msa0279780 | MtrunA17_Chr1g0205221 | 26.199 | 271 | 187 | 4 | 33 | 291 | 234 | 503 | 1.26e-17 | 83.6 |
| Msa0279780 | MtrunA17_Chr1g0150031 | 27.465 | 142 | 103 | 0 | 157 | 298 | 5 | 146 | 7.33e-13 | 66.6 |
| Msa0279780 | MtrunA17_Chr1g0150001 | 24.026 | 308 | 214 | 8 | 8 | 306 | 158 | 454 | 2.48e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279780 | AT1G64890.1 | 59.877 | 324 | 119 | 3 | 5 | 324 | 124 | 440 | 6.98e-125 | 365 |
| Msa0279780 | AT2G33280.2 | 39.688 | 320 | 171 | 5 | 5 | 313 | 7 | 315 | 7.49e-61 | 198 |
| Msa0279780 | AT2G33280.3 | 39.688 | 320 | 171 | 5 | 5 | 313 | 81 | 389 | 8.04e-60 | 197 |
| Msa0279780 | AT2G33280.1 | 39.688 | 320 | 171 | 5 | 5 | 313 | 189 | 497 | 4.15e-59 | 198 |
| Msa0279780 | AT1G04570.2 | 40.244 | 328 | 176 | 5 | 5 | 323 | 44 | 360 | 2.82e-57 | 190 |
| Msa0279780 | AT1G04570.1 | 40.244 | 328 | 176 | 5 | 5 | 323 | 192 | 508 | 1.36e-55 | 189 |
| Msa0279780 | AT5G54860.1 | 31.034 | 203 | 140 | 0 | 112 | 314 | 281 | 483 | 6.69e-29 | 116 |
| Msa0279780 | AT2G32040.1 | 27.273 | 275 | 181 | 6 | 33 | 291 | 248 | 519 | 1.70e-17 | 83.6 |
| Msa0279780 | AT2G32040.2 | 26.692 | 266 | 180 | 4 | 33 | 284 | 117 | 381 | 2.27e-17 | 82.8 |
| Msa0279780 | AT5G10820.1 | 22.857 | 315 | 223 | 7 | 19 | 320 | 171 | 478 | 2.53e-12 | 67.8 |
| Msa0279780 | AT5G25050.1 | 22.561 | 328 | 236 | 4 | 5 | 324 | 150 | 467 | 4.58e-12 | 67.0 |
| Msa0279780 | AT1G79710.2 | 23.127 | 307 | 218 | 6 | 8 | 306 | 157 | 453 | 3.19e-11 | 64.3 |
| Msa0279780 | AT1G79710.1 | 23.127 | 307 | 218 | 6 | 8 | 306 | 157 | 453 | 3.19e-11 | 64.3 |
| Msa0279780 | AT5G25040.5 | 27.465 | 142 | 103 | 0 | 173 | 314 | 167 | 308 | 9.30e-11 | 62.8 |
Find 68 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGATTGAATACGCGGTTTC+AGG | 0.204611 | 2_3:+13869935 | None:intergenic |
| TTGCACTTGCATCATATATT+AGG | 0.223213 | 2_3:-13869466 | Msa0279780:CDS |
| GTACTTTGTTGCCAATATTT+TGG | 0.228328 | 2_3:-13869388 | Msa0279780:CDS |
| GTCAGGCAACAATGCTTCTA+TGG | 0.233439 | 2_3:-13869799 | Msa0279780:CDS |
| ATCCCAATTGATGGATTCTT+TGG | 0.266199 | 2_3:+13869998 | None:intergenic |
| AAAATCGACTCGTCCGTATT+AGG | 0.281297 | 2_3:-13869839 | Msa0279780:CDS |
| CCAATTCTTCATGACCATTT+CGG | 0.282746 | 2_3:-13870044 | Msa0279780:CDS |
| TCCTAGGTGATATAGATTTC+AGG | 0.286787 | 2_3:+13869756 | None:intergenic |
| GCAATCTTCAATTCTTTGTT+TGG | 0.299344 | 2_3:-13870168 | Msa0279780:CDS |
| ATAACAGGAAGTGATCTTTC+AGG | 0.300992 | 2_3:-13869443 | Msa0279780:CDS |
| ATGGCTAGCAATAGCAATTT+AGG | 0.314480 | 2_3:-13870289 | Msa0279780:CDS |
| TGTTTCTTTATCCCAATTGA+TGG | 0.339353 | 2_3:+13869989 | None:intergenic |
| ATGCATGATGACCAAAATAT+TGG | 0.339997 | 2_3:+13869377 | None:intergenic |
| CTTCCAAAGAATCCATCAAT+TGG | 0.352075 | 2_3:-13870001 | Msa0279780:CDS |
| GCAGTTATTCCCTTACTTAA+CGG | 0.368370 | 2_3:-13869893 | Msa0279780:CDS |
| CCGAAATGGTCATGAAGAAT+TGG | 0.370944 | 2_3:+13870044 | None:intergenic |
| GCATCATATATTAGGATAAC+AGG | 0.379419 | 2_3:-13869458 | Msa0279780:CDS |
| GGAGTCGCCGACAACCTTCT+TGG | 0.419098 | 2_3:-13870127 | Msa0279780:CDS |
| GAACATGGTTCCGTTAAGTA+AGG | 0.435687 | 2_3:+13869883 | None:intergenic |
| TCGGTTCGCAAAAGCTCCCT+TGG | 0.439914 | 2_3:-13870025 | Msa0279780:CDS |
| AGGTTGTGAAGGGTCAATAA+TGG | 0.446635 | 2_3:-13869543 | Msa0279780:CDS |
| GCGCGGCTTCTATAGACAAA+TGG | 0.447490 | 2_3:-13869672 | Msa0279780:CDS |
| CGCGGCTTCTATAGACAAAT+GGG | 0.463959 | 2_3:-13869671 | Msa0279780:CDS |
| TCTTATGTCAGCTGTTGCAT+TGG | 0.467011 | 2_3:-13869516 | Msa0279780:CDS |
| AGATGGTTGTTGAGAGTGCT+TGG | 0.481333 | 2_3:+13870198 | None:intergenic |
| AACCTTGGAGATGCCTAATA+CGG | 0.481902 | 2_3:+13869826 | None:intergenic |
| TTCCAAAGAATCCATCAATT+GGG | 0.497428 | 2_3:-13870000 | Msa0279780:CDS |
| ATCACAACATAGAGTGTGTC+CGG | 0.502237 | 2_3:+13869644 | None:intergenic |
| TCAGGCAACAATGCTTCTAT+GGG | 0.507506 | 2_3:-13869798 | Msa0279780:CDS |
| ATCGCTGATATCAGTTTCCT+AGG | 0.514468 | 2_3:+13869740 | None:intergenic |
| TGTGCTAATAACACAGTGAA+TGG | 0.519241 | 2_3:+13869578 | None:intergenic |
| ATGGATTCTTTGGAAGTCCA+AGG | 0.522941 | 2_3:+13870008 | None:intergenic |
| CTATAGACAAATGGGCGTGC+CGG | 0.532503 | 2_3:-13869663 | Msa0279780:CDS |
| CGGAGGCTGTTTACACATCT+CGG | 0.534081 | 2_3:+13870228 | None:intergenic |
| AAACCGCGTATTCAATCTCA+TGG | 0.537147 | 2_3:-13869931 | Msa0279780:CDS |
| GTTTGGATAGCTTCCTCCGT+AGG | 0.539294 | 2_3:-13870151 | Msa0279780:CDS |
| GTCGGCGACTCCTCCTACGG+AGG | 0.543320 | 2_3:+13870138 | None:intergenic |
| CTATGTCCACAAGGTTGTGA+AGG | 0.550351 | 2_3:-13869554 | Msa0279780:CDS |
| TGATGAAAATGCCGCCAAGA+AGG | 0.554794 | 2_3:+13870113 | None:intergenic |
| TGAAGATTGCCTGAGGAAGA+TGG | 0.558591 | 2_3:+13870181 | None:intergenic |
| TCTCAACAACCATCTTCCTC+AGG | 0.563641 | 2_3:-13870190 | Msa0279780:CDS |
| GTTGTCGGCGACTCCTCCTA+CGG | 0.565958 | 2_3:+13870135 | None:intergenic |
| TGGATAGCTTCCTCCGTAGG+AGG | 0.571046 | 2_3:-13870148 | Msa0279780:CDS |
| TTCATTGTGAGTGGATACCT+TGG | 0.575076 | 2_3:-13869491 | Msa0279780:CDS |
| GATCTTTCAGGATTACCACT+TGG | 0.577489 | 2_3:-13869431 | Msa0279780:CDS |
| GTCGCCGACAACCTTCTTGG+CGG | 0.586487 | 2_3:-13870124 | Msa0279780:CDS |
| TGGATTCTTTGGAAGTCCAA+GGG | 0.587002 | 2_3:+13870009 | None:intergenic |
| AATGCCGCCAAGAAGGTTGT+CGG | 0.589201 | 2_3:+13870120 | None:intergenic |
| GTCCGTATTAGGCATCTCCA+AGG | 0.597203 | 2_3:-13869828 | Msa0279780:CDS |
| AACATGGTTCCGTTAAGTAA+GGG | 0.598297 | 2_3:+13869884 | None:intergenic |
| GGCGCTTCAATAACTGAGGT+AGG | 0.598851 | 2_3:-13870268 | Msa0279780:CDS |
| TGAGAGTGCTTGGTTGAAGA+CGG | 0.599574 | 2_3:+13870208 | None:intergenic |
| TATGTCCACAAGGTTGTGAA+GGG | 0.609940 | 2_3:-13869553 | Msa0279780:CDS |
| AGAATTGGAGAGCAACAAGA+AGG | 0.612407 | 2_3:+13870059 | None:intergenic |
| ATTGACCCTTCACAACCTTG+TGG | 0.612853 | 2_3:+13869548 | None:intergenic |
| TCAGATGTCTTATTTGTGCG+CGG | 0.615966 | 2_3:-13869689 | Msa0279780:CDS |
| GCATTGGCATTCATTGTGAG+TGG | 0.623859 | 2_3:-13869500 | Msa0279780:CDS |
| TTGTGTCTGGTAAAAGAACA+TGG | 0.641957 | 2_3:+13869868 | None:intergenic |
| TTTAGGCGCTTCAATAACTG+AGG | 0.648844 | 2_3:-13870272 | Msa0279780:CDS |
| GCTTGTATCACAAGTCCAAG+TGG | 0.650462 | 2_3:+13869416 | None:intergenic |
| ACCTGAAATCTATATCACCT+AGG | 0.659630 | 2_3:-13869757 | Msa0279780:CDS |
| AAAGAATTGAAGATTGCCTG+AGG | 0.671725 | 2_3:+13870174 | None:intergenic |
| TTAGCACAGCTATGTCCACA+AGG | 0.671939 | 2_3:-13869563 | Msa0279780:CDS |
| TTTACACATCTCGGCAACGA+TGG | 0.672520 | 2_3:+13870237 | None:intergenic |
| AAACCATGAGATTGAATACG+CGG | 0.679063 | 2_3:+13869928 | None:intergenic |
| GAGTGCTTGGTTGAAGACGG+AGG | 0.706251 | 2_3:+13870211 | None:intergenic |
| ATGATGCAAGTGCAACACCA+AGG | 0.715023 | 2_3:+13869474 | None:intergenic |
| CAGGCAACAATGCTTCTATG+GGG | 0.726660 | 2_3:-13869797 | Msa0279780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTTTGTTTTTACATATTC+AGG | + | chr2_3:13870276-13870295 | None:intergenic | 20.0% |
| !!! | TCTTTTGTTTTTACATATTC+AGG | + | chr2_3:13870276-13870295 | None:intergenic | 20.0% |
| !! | AAAAACATAAACATGGATTG+TGG | + | chr2_3:13869544-13869563 | None:intergenic | 25.0% |
| !!! | CAATCCATGTTTATGTTTTT+TGG | - | chr2_3:13869544-13869563 | Msa0279780:CDS | 25.0% |
| !! | AAAAACATAAACATGGATTG+TGG | + | chr2_3:13869544-13869563 | None:intergenic | 25.0% |
| !!! | CAATCCATGTTTATGTTTTT+TGG | - | chr2_3:13869544-13869563 | Msa0279780:CDS | 25.0% |
| GCAATCTTCAATTCTTTGTT+TGG | - | chr2_3:13869458-13869477 | Msa0279780:CDS | 30.0% | |
| AAGGCCAAAAAACATAAACA+TGG | + | chr2_3:13869551-13869570 | None:intergenic | 30.0% | |
| TTCCAAAGAATCCATCAATT+GGG | - | chr2_3:13869626-13869645 | Msa0279780:CDS | 30.0% | |
| TGTTTCTTTATCCCAATTGA+TGG | + | chr2_3:13869640-13869659 | None:intergenic | 30.0% | |
| TTGCACTTGCATCATATATT+AGG | - | chr2_3:13870160-13870179 | Msa0279780:CDS | 30.0% | |
| GCATCATATATTAGGATAAC+AGG | - | chr2_3:13870168-13870187 | Msa0279780:CDS | 30.0% | |
| ! | GTACTTTGTTGCCAATATTT+TGG | - | chr2_3:13870238-13870257 | Msa0279780:CDS | 30.0% |
| ATGCATGATGACCAAAATAT+TGG | + | chr2_3:13870252-13870271 | None:intergenic | 30.0% | |
| GCAATCTTCAATTCTTTGTT+TGG | - | chr2_3:13869458-13869477 | Msa0279780:CDS | 30.0% | |
| AAGGCCAAAAAACATAAACA+TGG | + | chr2_3:13869551-13869570 | None:intergenic | 30.0% | |
| TTCCAAAGAATCCATCAATT+GGG | - | chr2_3:13869626-13869645 | Msa0279780:CDS | 30.0% | |
| TGTTTCTTTATCCCAATTGA+TGG | + | chr2_3:13869640-13869659 | None:intergenic | 30.0% | |
| TTGCACTTGCATCATATATT+AGG | - | chr2_3:13870160-13870179 | Msa0279780:CDS | 30.0% | |
| GCATCATATATTAGGATAAC+AGG | - | chr2_3:13870168-13870187 | Msa0279780:CDS | 30.0% | |
| ! | GTACTTTGTTGCCAATATTT+TGG | - | chr2_3:13870238-13870257 | Msa0279780:CDS | 30.0% |
| ATGCATGATGACCAAAATAT+TGG | + | chr2_3:13870252-13870271 | None:intergenic | 30.0% | |
| ATGGCTAGCAATAGCAATTT+AGG | - | chr2_3:13869337-13869356 | Msa0279780:CDS | 35.0% | |
| AAAGAATTGAAGATTGCCTG+AGG | + | chr2_3:13869455-13869474 | None:intergenic | 35.0% | |
| CCAATTCTTCATGACCATTT+CGG | - | chr2_3:13869582-13869601 | Msa0279780:CDS | 35.0% | |
| CTTCCAAAGAATCCATCAAT+TGG | - | chr2_3:13869625-13869644 | Msa0279780:CDS | 35.0% | |
| !! | ATCCCAATTGATGGATTCTT+TGG | + | chr2_3:13869631-13869650 | None:intergenic | 35.0% |
| AAACCATGAGATTGAATACG+CGG | + | chr2_3:13869701-13869720 | None:intergenic | 35.0% | |
| GCAGTTATTCCCTTACTTAA+CGG | - | chr2_3:13869733-13869752 | Msa0279780:CDS | 35.0% | |
| AACATGGTTCCGTTAAGTAA+GGG | + | chr2_3:13869745-13869764 | None:intergenic | 35.0% | |
| TTGTGTCTGGTAAAAGAACA+TGG | + | chr2_3:13869761-13869780 | None:intergenic | 35.0% | |
| !!! | CGATTTTCAAGTATTGTGTC+TGG | + | chr2_3:13869774-13869793 | None:intergenic | 35.0% |
| ACCTGAAATCTATATCACCT+AGG | - | chr2_3:13869869-13869888 | Msa0279780:CDS | 35.0% | |
| TCCTAGGTGATATAGATTTC+AGG | + | chr2_3:13869873-13869892 | None:intergenic | 35.0% | |
| ! | CTCTATGTTGTGATTTTCTC+AGG | - | chr2_3:13869991-13870010 | Msa0279780:CDS | 35.0% |
| ! | TGTGATTTTCTCAGGATTCT+TGG | - | chr2_3:13869999-13870018 | Msa0279780:CDS | 35.0% |
| TGTGCTAATAACACAGTGAA+TGG | + | chr2_3:13870051-13870070 | None:intergenic | 35.0% | |
| ATAACAGGAAGTGATCTTTC+AGG | - | chr2_3:13870183-13870202 | Msa0279780:CDS | 35.0% | |
| ATGGCTAGCAATAGCAATTT+AGG | - | chr2_3:13869337-13869356 | Msa0279780:CDS | 35.0% | |
| AAAGAATTGAAGATTGCCTG+AGG | + | chr2_3:13869455-13869474 | None:intergenic | 35.0% | |
| CCAATTCTTCATGACCATTT+CGG | - | chr2_3:13869582-13869601 | Msa0279780:CDS | 35.0% | |
| CTTCCAAAGAATCCATCAAT+TGG | - | chr2_3:13869625-13869644 | Msa0279780:CDS | 35.0% | |
| !! | ATCCCAATTGATGGATTCTT+TGG | + | chr2_3:13869631-13869650 | None:intergenic | 35.0% |
| AAACCATGAGATTGAATACG+CGG | + | chr2_3:13869701-13869720 | None:intergenic | 35.0% | |
| GCAGTTATTCCCTTACTTAA+CGG | - | chr2_3:13869733-13869752 | Msa0279780:CDS | 35.0% | |
| AACATGGTTCCGTTAAGTAA+GGG | + | chr2_3:13869745-13869764 | None:intergenic | 35.0% | |
| TTGTGTCTGGTAAAAGAACA+TGG | + | chr2_3:13869761-13869780 | None:intergenic | 35.0% | |
| !!! | CGATTTTCAAGTATTGTGTC+TGG | + | chr2_3:13869774-13869793 | None:intergenic | 35.0% |
| ACCTGAAATCTATATCACCT+AGG | - | chr2_3:13869869-13869888 | Msa0279780:CDS | 35.0% | |
| TCCTAGGTGATATAGATTTC+AGG | + | chr2_3:13869873-13869892 | None:intergenic | 35.0% | |
| ! | CTCTATGTTGTGATTTTCTC+AGG | - | chr2_3:13869991-13870010 | Msa0279780:CDS | 35.0% |
| ! | TGTGATTTTCTCAGGATTCT+TGG | - | chr2_3:13869999-13870018 | Msa0279780:CDS | 35.0% |
| TGTGCTAATAACACAGTGAA+TGG | + | chr2_3:13870051-13870070 | None:intergenic | 35.0% | |
| ATAACAGGAAGTGATCTTTC+AGG | - | chr2_3:13870183-13870202 | Msa0279780:CDS | 35.0% | |
| TTTAGGCGCTTCAATAACTG+AGG | - | chr2_3:13869354-13869373 | Msa0279780:CDS | 40.0% | |
| AGAATTGGAGAGCAACAAGA+AGG | + | chr2_3:13869570-13869589 | None:intergenic | 40.0% | |
| CCGAAATGGTCATGAAGAAT+TGG | + | chr2_3:13869585-13869604 | None:intergenic | 40.0% | |
| ! | TGGATTCTTTGGAAGTCCAA+GGG | + | chr2_3:13869620-13869639 | None:intergenic | 40.0% |
| ! | ATGGATTCTTTGGAAGTCCA+AGG | + | chr2_3:13869621-13869640 | None:intergenic | 40.0% |
| !!! | GGTTTCAGGTTTTCTTAGTG+CGG | + | chr2_3:13869680-13869699 | None:intergenic | 40.0% |
| AAACCGCGTATTCAATCTCA+TGG | - | chr2_3:13869695-13869714 | Msa0279780:CDS | 40.0% | |
| GAACATGGTTCCGTTAAGTA+AGG | + | chr2_3:13869746-13869765 | None:intergenic | 40.0% | |
| !! | AAAATCGACTCGTCCGTATT+AGG | - | chr2_3:13869787-13869806 | Msa0279780:CDS | 40.0% |
| AACCTTGGAGATGCCTAATA+CGG | + | chr2_3:13869803-13869822 | None:intergenic | 40.0% | |
| ! | TTAGGCATCTCCAAGGTTTT+TGG | - | chr2_3:13869805-13869824 | Msa0279780:CDS | 40.0% |
| TCAGGCAACAATGCTTCTAT+GGG | - | chr2_3:13869828-13869847 | Msa0279780:CDS | 40.0% | |
| ATCGCTGATATCAGTTTCCT+AGG | + | chr2_3:13869889-13869908 | None:intergenic | 40.0% | |
| !! | TCAGATGTCTTATTTGTGCG+CGG | - | chr2_3:13869937-13869956 | Msa0279780:CDS | 40.0% |
| ATCACAACATAGAGTGTGTC+CGG | + | chr2_3:13869985-13870004 | None:intergenic | 40.0% | |
| ! | GATTTTCTCAGGATTCTTGG+AGG | - | chr2_3:13870002-13870021 | Msa0279780:CDS | 40.0% |
| TATGTCCACAAGGTTGTGAA+GGG | - | chr2_3:13870073-13870092 | Msa0279780:CDS | 40.0% | |
| AGGTTGTGAAGGGTCAATAA+TGG | - | chr2_3:13870083-13870102 | Msa0279780:CDS | 40.0% | |
| TCTTATGTCAGCTGTTGCAT+TGG | - | chr2_3:13870110-13870129 | Msa0279780:CDS | 40.0% | |
| TTCATTGTGAGTGGATACCT+TGG | - | chr2_3:13870135-13870154 | Msa0279780:CDS | 40.0% | |
| GATCTTTCAGGATTACCACT+TGG | - | chr2_3:13870195-13870214 | Msa0279780:CDS | 40.0% | |
| TTTAGGCGCTTCAATAACTG+AGG | - | chr2_3:13869354-13869373 | Msa0279780:CDS | 40.0% | |
| AGAATTGGAGAGCAACAAGA+AGG | + | chr2_3:13869570-13869589 | None:intergenic | 40.0% | |
| CCGAAATGGTCATGAAGAAT+TGG | + | chr2_3:13869585-13869604 | None:intergenic | 40.0% | |
| ! | TGGATTCTTTGGAAGTCCAA+GGG | + | chr2_3:13869620-13869639 | None:intergenic | 40.0% |
| ! | ATGGATTCTTTGGAAGTCCA+AGG | + | chr2_3:13869621-13869640 | None:intergenic | 40.0% |
| !!! | GGTTTCAGGTTTTCTTAGTG+CGG | + | chr2_3:13869680-13869699 | None:intergenic | 40.0% |
| AAACCGCGTATTCAATCTCA+TGG | - | chr2_3:13869695-13869714 | Msa0279780:CDS | 40.0% | |
| GAACATGGTTCCGTTAAGTA+AGG | + | chr2_3:13869746-13869765 | None:intergenic | 40.0% | |
| !! | AAAATCGACTCGTCCGTATT+AGG | - | chr2_3:13869787-13869806 | Msa0279780:CDS | 40.0% |
| AACCTTGGAGATGCCTAATA+CGG | + | chr2_3:13869803-13869822 | None:intergenic | 40.0% | |
| ! | TTAGGCATCTCCAAGGTTTT+TGG | - | chr2_3:13869805-13869824 | Msa0279780:CDS | 40.0% |
| TCAGGCAACAATGCTTCTAT+GGG | - | chr2_3:13869828-13869847 | Msa0279780:CDS | 40.0% | |
| ATCGCTGATATCAGTTTCCT+AGG | + | chr2_3:13869889-13869908 | None:intergenic | 40.0% | |
| !! | TCAGATGTCTTATTTGTGCG+CGG | - | chr2_3:13869937-13869956 | Msa0279780:CDS | 40.0% |
| ATCACAACATAGAGTGTGTC+CGG | + | chr2_3:13869985-13870004 | None:intergenic | 40.0% | |
| ! | GATTTTCTCAGGATTCTTGG+AGG | - | chr2_3:13870002-13870021 | Msa0279780:CDS | 40.0% |
| TATGTCCACAAGGTTGTGAA+GGG | - | chr2_3:13870073-13870092 | Msa0279780:CDS | 40.0% | |
| AGGTTGTGAAGGGTCAATAA+TGG | - | chr2_3:13870083-13870102 | Msa0279780:CDS | 40.0% | |
| TCTTATGTCAGCTGTTGCAT+TGG | - | chr2_3:13870110-13870129 | Msa0279780:CDS | 40.0% | |
| TTCATTGTGAGTGGATACCT+TGG | - | chr2_3:13870135-13870154 | Msa0279780:CDS | 40.0% | |
| GATCTTTCAGGATTACCACT+TGG | - | chr2_3:13870195-13870214 | Msa0279780:CDS | 40.0% | |
| TTTACACATCTCGGCAACGA+TGG | + | chr2_3:13869392-13869411 | None:intergenic | 45.0% | |
| !! | TGAGAGTGCTTGGTTGAAGA+CGG | + | chr2_3:13869421-13869440 | None:intergenic | 45.0% |
| !! | AGATGGTTGTTGAGAGTGCT+TGG | + | chr2_3:13869431-13869450 | None:intergenic | 45.0% |
| TCTCAACAACCATCTTCCTC+AGG | - | chr2_3:13869436-13869455 | Msa0279780:CDS | 45.0% | |
| TGAAGATTGCCTGAGGAAGA+TGG | + | chr2_3:13869448-13869467 | None:intergenic | 45.0% | |
| TGATGAAAATGCCGCCAAGA+AGG | + | chr2_3:13869516-13869535 | None:intergenic | 45.0% | |
| GAGATTGAATACGCGGTTTC+AGG | + | chr2_3:13869694-13869713 | None:intergenic | 45.0% | |
| !!! | CATCTCCAAGGTTTTTGGTC+AGG | - | chr2_3:13869810-13869829 | Msa0279780:CDS | 45.0% |
| TGTTGCCTGACCAAAAACCT+TGG | + | chr2_3:13869818-13869837 | None:intergenic | 45.0% | |
| GTCAGGCAACAATGCTTCTA+TGG | - | chr2_3:13869827-13869846 | Msa0279780:CDS | 45.0% | |
| CAGGCAACAATGCTTCTATG+GGG | - | chr2_3:13869829-13869848 | Msa0279780:CDS | 45.0% | |
| CGCGGCTTCTATAGACAAAT+GGG | - | chr2_3:13869955-13869974 | Msa0279780:CDS | 45.0% | |
| TTAGCACAGCTATGTCCACA+AGG | - | chr2_3:13870063-13870082 | Msa0279780:CDS | 45.0% | |
| CTATGTCCACAAGGTTGTGA+AGG | - | chr2_3:13870072-13870091 | Msa0279780:CDS | 45.0% | |
| ATTGACCCTTCACAACCTTG+TGG | + | chr2_3:13870081-13870100 | None:intergenic | 45.0% | |
| ! | GCATTGGCATTCATTGTGAG+TGG | - | chr2_3:13870126-13870145 | Msa0279780:CDS | 45.0% |
| ATGATGCAAGTGCAACACCA+AGG | + | chr2_3:13870155-13870174 | None:intergenic | 45.0% | |
| GCTTGTATCACAAGTCCAAG+TGG | + | chr2_3:13870213-13870232 | None:intergenic | 45.0% | |
| TTTACACATCTCGGCAACGA+TGG | + | chr2_3:13869392-13869411 | None:intergenic | 45.0% | |
| !! | TGAGAGTGCTTGGTTGAAGA+CGG | + | chr2_3:13869421-13869440 | None:intergenic | 45.0% |
| !! | AGATGGTTGTTGAGAGTGCT+TGG | + | chr2_3:13869431-13869450 | None:intergenic | 45.0% |
| TCTCAACAACCATCTTCCTC+AGG | - | chr2_3:13869436-13869455 | Msa0279780:CDS | 45.0% | |
| TGAAGATTGCCTGAGGAAGA+TGG | + | chr2_3:13869448-13869467 | None:intergenic | 45.0% | |
| TGATGAAAATGCCGCCAAGA+AGG | + | chr2_3:13869516-13869535 | None:intergenic | 45.0% | |
| GAGATTGAATACGCGGTTTC+AGG | + | chr2_3:13869694-13869713 | None:intergenic | 45.0% | |
| !!! | CATCTCCAAGGTTTTTGGTC+AGG | - | chr2_3:13869810-13869829 | Msa0279780:CDS | 45.0% |
| TGTTGCCTGACCAAAAACCT+TGG | + | chr2_3:13869818-13869837 | None:intergenic | 45.0% | |
| GTCAGGCAACAATGCTTCTA+TGG | - | chr2_3:13869827-13869846 | Msa0279780:CDS | 45.0% | |
| CAGGCAACAATGCTTCTATG+GGG | - | chr2_3:13869829-13869848 | Msa0279780:CDS | 45.0% | |
| CGCGGCTTCTATAGACAAAT+GGG | - | chr2_3:13869955-13869974 | Msa0279780:CDS | 45.0% | |
| TTAGCACAGCTATGTCCACA+AGG | - | chr2_3:13870063-13870082 | Msa0279780:CDS | 45.0% | |
| CTATGTCCACAAGGTTGTGA+AGG | - | chr2_3:13870072-13870091 | Msa0279780:CDS | 45.0% | |
| ATTGACCCTTCACAACCTTG+TGG | + | chr2_3:13870081-13870100 | None:intergenic | 45.0% | |
| ! | GCATTGGCATTCATTGTGAG+TGG | - | chr2_3:13870126-13870145 | Msa0279780:CDS | 45.0% |
| ATGATGCAAGTGCAACACCA+AGG | + | chr2_3:13870155-13870174 | None:intergenic | 45.0% | |
| GCTTGTATCACAAGTCCAAG+TGG | + | chr2_3:13870213-13870232 | None:intergenic | 45.0% | |
| GGCGCTTCAATAACTGAGGT+AGG | - | chr2_3:13869358-13869377 | Msa0279780:CDS | 50.0% | |
| CGGAGGCTGTTTACACATCT+CGG | + | chr2_3:13869401-13869420 | None:intergenic | 50.0% | |
| GTTTGGATAGCTTCCTCCGT+AGG | - | chr2_3:13869475-13869494 | Msa0279780:CDS | 50.0% | |
| AATGCCGCCAAGAAGGTTGT+CGG | + | chr2_3:13869509-13869528 | None:intergenic | 50.0% | |
| ! | GGAGCTTTTGCGAACCGAAA+TGG | + | chr2_3:13869599-13869618 | None:intergenic | 50.0% |
| GTCCGTATTAGGCATCTCCA+AGG | - | chr2_3:13869798-13869817 | Msa0279780:CDS | 50.0% | |
| GCGCGGCTTCTATAGACAAA+TGG | - | chr2_3:13869954-13869973 | Msa0279780:CDS | 50.0% | |
| CTATAGACAAATGGGCGTGC+CGG | - | chr2_3:13869963-13869982 | Msa0279780:CDS | 50.0% | |
| GGCGCTTCAATAACTGAGGT+AGG | - | chr2_3:13869358-13869377 | Msa0279780:CDS | 50.0% | |
| CGGAGGCTGTTTACACATCT+CGG | + | chr2_3:13869401-13869420 | None:intergenic | 50.0% | |
| GTTTGGATAGCTTCCTCCGT+AGG | - | chr2_3:13869475-13869494 | Msa0279780:CDS | 50.0% | |
| AATGCCGCCAAGAAGGTTGT+CGG | + | chr2_3:13869509-13869528 | None:intergenic | 50.0% | |
| ! | GGAGCTTTTGCGAACCGAAA+TGG | + | chr2_3:13869599-13869618 | None:intergenic | 50.0% |
| GTCCGTATTAGGCATCTCCA+AGG | - | chr2_3:13869798-13869817 | Msa0279780:CDS | 50.0% | |
| GCGCGGCTTCTATAGACAAA+TGG | - | chr2_3:13869954-13869973 | Msa0279780:CDS | 50.0% | |
| CTATAGACAAATGGGCGTGC+CGG | - | chr2_3:13869963-13869982 | Msa0279780:CDS | 50.0% | |
| GAGTGCTTGGTTGAAGACGG+AGG | + | chr2_3:13869418-13869437 | None:intergenic | 55.0% | |
| TGGATAGCTTCCTCCGTAGG+AGG | - | chr2_3:13869478-13869497 | Msa0279780:CDS | 55.0% | |
| ! | TCGGTTCGCAAAAGCTCCCT+TGG | - | chr2_3:13869601-13869620 | Msa0279780:CDS | 55.0% |
| GAGTGCTTGGTTGAAGACGG+AGG | + | chr2_3:13869418-13869437 | None:intergenic | 55.0% | |
| TGGATAGCTTCCTCCGTAGG+AGG | - | chr2_3:13869478-13869497 | Msa0279780:CDS | 55.0% | |
| ! | TCGGTTCGCAAAAGCTCCCT+TGG | - | chr2_3:13869601-13869620 | Msa0279780:CDS | 55.0% |
| GTTGTCGGCGACTCCTCCTA+CGG | + | chr2_3:13869494-13869513 | None:intergenic | 60.0% | |
| GGAGTCGCCGACAACCTTCT+TGG | - | chr2_3:13869499-13869518 | Msa0279780:CDS | 60.0% | |
| GTCGCCGACAACCTTCTTGG+CGG | - | chr2_3:13869502-13869521 | Msa0279780:CDS | 60.0% | |
| GTTGTCGGCGACTCCTCCTA+CGG | + | chr2_3:13869494-13869513 | None:intergenic | 60.0% | |
| GGAGTCGCCGACAACCTTCT+TGG | - | chr2_3:13869499-13869518 | Msa0279780:CDS | 60.0% | |
| GTCGCCGACAACCTTCTTGG+CGG | - | chr2_3:13869502-13869521 | Msa0279780:CDS | 60.0% | |
| GTCGGCGACTCCTCCTACGG+AGG | + | chr2_3:13869491-13869510 | None:intergenic | 70.0% | |
| GTCGGCGACTCCTCCTACGG+AGG | + | chr2_3:13869491-13869510 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 13869337 | 13870311 | 13869337 | ID=Msa0279780;Name=Msa0279780 |
| chr2_3 | mRNA | 13869337 | 13870311 | 13869337 | ID=Msa0279780-mRNA-1;Parent=Msa0279780;Name=Msa0279780-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|324 |
| chr2_3 | exon | 13869337 | 13870311 | 13869337 | ID=Msa0279780-mRNA-1:exon:5865;Parent=Msa0279780-mRNA-1 |
| chr2_3 | CDS | 13869337 | 13870311 | 13869337 | ID=Msa0279780-mRNA-1:cds;Parent=Msa0279780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
