AlfalfaGEDB | Msa0279820

M. sativa cultivar zhongmu-4 / Msa0279820

KEGG: K02206
GO: GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030154 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0072686 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1903047 GO:2000241
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0279820	PPE00280.1	90.254	236	23	0	1	236	1	236	4.10e-158	447

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0279820	sp\|P24923\|CDC21_MEDSA	75.172	290	14	2	5	236	2	291	8.01e-147	414

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0279820	A0A1R3J8G9	82.031	256	26	1	1	236	1	256	1.74e-149	426

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0199050	Msa0279820	0.931923	1.840233e-94	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0279820	MtrunA17_Chr2g0293491	76.190	294	12	2	1	236	1	294	1.51e-153	428
Msa0279820	MtrunA17_Chr4g0051261	89.394	132	14	0	105	236	163	294	2.03e-87	260
Msa0279820	MtrunA17_Chr4g0051261	93.396	106	7	0	1	106	1	106	3.58e-63	199
Msa0279820	MtrunA17_Chr8g0358921	37.288	295	122	4	1	232	44	338	1.37e-58	189
Msa0279820	MtrunA17_Chr6g0483151	38.028	284	119	5	2	229	12	294	3.95e-52	174
Msa0279820	MtrunA17_Chr4g0002001	57.031	128	54	1	105	232	180	306	4.65e-50	166
Msa0279820	MtrunA17_Chr4g0002001	55.660	106	34	2	1	93	1	106	1.97e-27	106
Msa0279820	MtrunA17_Chr1g0187371	54.688	128	57	1	105	232	185	311	1.25e-49	164
Msa0279820	MtrunA17_Chr1g0187371	48.624	109	43	3	2	104	16	117	2.54e-24	98.6
Msa0279820	MtrunA17_Chr8g0369451	32.082	293	139	6	1	236	1	290	1.12e-47	163

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0279820	AT3G48750.1	63.605	294	49	2	1	236	1	294	2.74e-127	362
Msa0279820	AT3G54180.1	43.934	305	97	6	1	232	1	304	1.57e-78	239
Msa0279820	AT1G76540.1	41.275	298	108	6	1	232	11	307	3.35e-77	235
Msa0279820	AT2G38620.4	44.578	249	116	5	1	232	1	244	2.11e-67	208
Msa0279820	AT5G63370.2	37.294	303	119	5	1	232	160	462	7.81e-59	193
Msa0279820	AT5G63370.3	37.294	303	119	5	1	232	160	462	7.81e-59	193
Msa0279820	AT5G63370.7	37.294	303	119	5	1	232	294	596	1.58e-57	192
Msa0279820	AT5G63370.8	37.294	303	119	5	1	232	294	596	1.58e-57	192
Msa0279820	AT5G63370.4	37.294	303	119	5	1	232	294	596	1.58e-57	192
Msa0279820	AT5G63370.6	37.294	303	119	5	1	232	294	596	1.58e-57	192

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Find 73 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTGAAGATCTGAGAAAA+TGG	0.341183	2_3:+14041072	None:intergenic
AACATACGGCGTCGTTTACA+AGG	0.470308	2_3:-14040872	Msa0279820:CDS
AAGATATTGATTATAGAATT+AGG	0.138235	2_3:+14035638	None:intergenic
AAGATTGGTGAAGGAACATA+CGG	0.575038	2_3:-14040886	Msa0279820:CDS
AAGCAGCGAAATCTCACGAA+TGG	0.622360	2_3:+14040768	None:intergenic
AAGGTGGAGAAGATTGGTGA+AGG	0.638609	2_3:-14040895	Msa0279820:CDS
AAGTCTGAATGGCAATATAC+AGG	0.502485	2_3:-14035437	Msa0279820:three_prime_UTR
AATCAATATCTTAATGGTAA+AGG	0.481493	2_3:-14035627	Msa0279820:three_prime_UTR
AATCGGCGACCTCTATTCCC+TGG	0.474228	2_3:-14037369	Msa0279820:CDS
AATTACTGCCAGGAGCGCTG+TGG	0.660367	2_3:-14035694	Msa0279820:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAACCAAAAAGAAAACAAC+GGG	-	chr2_3:14035355-14035374	Msa0279820:three_prime_UTR	30.0%
AGATGTTTGAATTTGTGTGT+CGG	-	chr2_3:14035947-14035966	Msa0279820:intron	30.0%
TTTGATGTCTAGTGTAATGT+TGG	-	chr2_3:14036034-14036053	Msa0279820:intron	30.0%
TCAGTTAATGTTTGGTAAAC+TGG	-	chr2_3:14036358-14036377	Msa0279820:intron	30.0%
AGCATATCTTGATAAGGAAA+TGG	+	chr2_3:14036733-14036752	None:intergenic	30.0%
TTTCCTTATCAAGATATGCT+TGG	-	chr2_3:14036733-14036752	Msa0279820:CDS	30.0%
GTGATCTTAAAATAACAGAG+AGG	+	chr2_3:14036929-14036948	None:intergenic	30.0%
GTCTAAATTAGATTTGTGGA+AGG	+	chr2_3:14037036-14037055	None:intergenic	30.0%
AATGATGATAAGCTTATGCT+TGG	-	chr2_3:14037073-14037092	Msa0279820:intron	30.0%
CAAAGAAATAAGCAAAGCAA+TGG	+	chr2_3:14037409-14037428	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	14035352	14041171	14035352	ID=Msa0279820;Name=Msa0279820
chr2_3	mRNA	14035352	14041171	14035352	ID=Msa0279820-mRNA-1;Parent=Msa0279820;Name=Msa0279820-mRNA-1;_AED=0.11;_eAED=0.11;_QI=151\|0.83\|1\|1\|1\|1\|7\|304\|236
chr2_3	exon	14035352	14035745	14035352	ID=Msa0279820-mRNA-1:exon:5949;Parent=Msa0279820-mRNA-1
chr2_3	exon	14036593	14036646	14036593	ID=Msa0279820-mRNA-1:exon:5948;Parent=Msa0279820-mRNA-1
chr2_3	exon	14036731	14036818	14036731	ID=Msa0279820-mRNA-1:exon:5947;Parent=Msa0279820-mRNA-1
chr2_3	exon	14037333	14037496	14037333	ID=Msa0279820-mRNA-1:exon:5946;Parent=Msa0279820-mRNA-1
chr2_3	exon	14039629	14039749	14039629	ID=Msa0279820-mRNA-1:exon:5945;Parent=Msa0279820-mRNA-1
chr2_3	exon	14040739	14040923	14040739	ID=Msa0279820-mRNA-1:exon:5944;Parent=Msa0279820-mRNA-1
chr2_3	exon	14041012	14041171	14041012	ID=Msa0279820-mRNA-1:exon:5943;Parent=Msa0279820-mRNA-1
chr2_3	five_prime_UTR	14041021	14041171	14041021	ID=Msa0279820-mRNA-1:five_prime_utr;Parent=Msa0279820-mRNA-1
chr2_3	CDS	14041012	14041020	14041012	ID=Msa0279820-mRNA-1:cds;Parent=Msa0279820-mRNA-1
chr2_3	CDS	14040739	14040923	14040739	ID=Msa0279820-mRNA-1:cds;Parent=Msa0279820-mRNA-1
chr2_3	CDS	14039629	14039749	14039629	ID=Msa0279820-mRNA-1:cds;Parent=Msa0279820-mRNA-1
chr2_3	CDS	14037333	14037496	14037333	ID=Msa0279820-mRNA-1:cds;Parent=Msa0279820-mRNA-1
chr2_3	CDS	14036731	14036818	14036731	ID=Msa0279820-mRNA-1:cds;Parent=Msa0279820-mRNA-1
chr2_3	CDS	14036593	14036646	14036593	ID=Msa0279820-mRNA-1:cds;Parent=Msa0279820-mRNA-1
chr2_3	CDS	14035656	14035745	14035656	ID=Msa0279820-mRNA-1:cds;Parent=Msa0279820-mRNA-1
chr2_3	three_prime_UTR	14035352	14035655	14035352	ID=Msa0279820-mRNA-1:three_prime_utr;Parent=Msa0279820-mRNA-1

Gene Sequence

>Msa0279820

ATGGAGCAATACGAAAAGGTGGAGAAGATTGGTGAAGGAACATACGGCGTCGTTTACAAGGCACGTGACCGTGTTACGAATGAAACCATCGCGTTGAAGAAGATTCGACTTGAACAGGAAGATGAAGGTGTTCCTAGCACCGCCATTCGTGAGATTTCGCTGCTTAAAGAAATGCAGCATAGGAACATCGTTAGGTTGCAGGATGTAGTACACAGTGACAAGCGATTGTATCTGGTTTTTGAGTATCTGGACTTAGATCTGAAGAAGCATATGGATTCATCTCCTGAGTTTATAAAAGATCCGCGACAAGTAAAAGTAGTTACACTGTGGTACCGAGCTCCGGAAATATTGCTTGGATCTCGTCATTATTCTACCCCAGTTGATGTTTGGTCAGTGGGATGTATATTTGCAGAGATGGCAAATCGGCGACCTCTATTCCCTGGGGATTCCGAGATTGATGAGTTATTTAAAATATTTAGAATCTTGGGTACACCAAATGAAGATACATGGCCAGGAGTAACTTCATTGCCTGATTTTAAATCAACATTTCCCAGGTGGCCATCTAAGGACCTAGCAACCGTGGTTCCAAATCTTGAGCCAGCTGGTCTTGATCTTCTTAATAGCATGCTTTGCTTGGATCCCACCAAAAGAATTACTGCCAGGAGCGCTGTGGAGCATGAATATTTCAAAGACATTAAGTTTGTACCCTAA

Protein sequence

>Msa0279820

MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSDKRLYLVFEYLDLDLKKHMDSSPEFIKDPRQVKVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMANRRPLFPGDSEIDELFKIFRILGTPNEDTWPGVTSLPDFKSTFPRWPSKDLATVVPNLEPAGLDLLNSMLCLDPTKRITARSAVEHEYFKDIKFVP*