AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0280240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0280240 MtrunA17_Chr2g0293961 91.436 397 26 3 1 394 1 392 0.0 739
Msa0280240 MtrunA17_Chr1g0192961 36.364 330 166 7 70 392 17 309 1.97e-60 201
Msa0280240 MtrunA17_Chr1g0192961 40.678 177 93 4 28 203 145 310 1.23e-33 129
Msa0280240 MtrunA17_Chr1g0192931 42.105 171 93 4 34 203 23 188 5.36e-32 119
Msa0280240 MtrunA17_Chr1g0192931 43.056 144 78 2 249 392 48 187 1.22e-31 119
Msa0280240 MtrunA17_Chr4g0041111 38.346 133 80 1 260 390 13 145 1.15e-22 93.2
Msa0280240 MtrunA17_Chr4g0041111 33.103 145 90 5 64 202 4 147 9.12e-20 85.1
Msa0280240 MtrunA17_Chr5g0441601 34.028 144 89 4 64 202 4 146 1.72e-20 87.0
Msa0280240 MtrunA17_Chr5g0441601 31.343 134 91 1 260 392 13 146 3.00e-18 80.9
Msa0280240 MtrunA17_Chr5g0441471 32.836 134 89 1 260 392 13 146 1.98e-19 84.3
Msa0280240 MtrunA17_Chr5g0441471 32.639 144 91 4 64 202 4 146 4.06e-17 77.8
Msa0280240 MtrunA17_Chr5g0441631 32.836 134 89 1 260 392 13 146 8.91e-19 82.4
Msa0280240 MtrunA17_Chr5g0441631 32.639 144 91 4 64 202 4 146 1.86e-16 75.9
Msa0280240 MtrunA17_Chr4g0041181 34.211 114 74 1 260 372 13 126 1.38e-16 76.6
Msa0280240 MtrunA17_Chr4g0041181 35.354 99 63 1 64 162 4 101 7.14e-15 71.6
Msa0280240 MtrunA17_Chr3g0110471 32.639 144 91 3 64 202 4 146 6.42e-16 74.3
Msa0280240 MtrunA17_Chr3g0110471 30.216 139 96 1 255 392 8 146 2.71e-13 67.0
Msa0280240 MtrunA17_Chr4g0071801 38.636 88 53 1 75 162 15 101 4.19e-12 63.5
Msa0280240 MtrunA17_Chr4g0071801 30.469 128 88 1 263 389 16 143 8.41e-12 62.8
Msa0280240 MtrunA17_Chr2g0290351 30.319 188 106 6 36 199 349 535 9.01e-12 67.0
Msa0280240 MtrunA17_Chr3g0101951 30.625 160 90 5 59 199 382 539 9.57e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0280240 AT3G06520.2 36.828 372 183 11 25 388 136 463 1.57e-57 195
Msa0280240 AT3G06520.2 30.631 333 187 13 70 392 7 305 2.56e-29 119
Msa0280240 AT3G06520.1 36.828 372 183 11 25 388 136 463 1.57e-57 195
Msa0280240 AT3G06520.1 30.631 333 187 13 70 392 7 305 2.56e-29 119
Msa0280240 AT1G09320.1 35.913 323 174 8 70 391 221 511 2.26e-55 191
Msa0280240 AT1G09320.1 32.153 367 207 11 45 394 13 354 2.66e-45 163
Msa0280240 AT1G09320.1 39.437 142 84 2 63 203 373 513 1.97e-24 105
Msa0280240 AT1G26540.1 28.443 334 168 13 69 388 7 283 3.04e-22 99.4
Msa0280240 AT1G26540.1 35.714 140 82 3 255 389 6 142 3.25e-15 77.8
Msa0280240 AT2G47230.1 25.826 333 184 10 67 388 2 282 7.94e-21 95.1
Msa0280240 AT2G47230.1 36.232 138 79 5 257 389 5 138 3.39e-15 77.8
Msa0280240 AT2G47230.2 25.904 332 183 11 67 387 2 281 3.96e-20 92.8
Msa0280240 AT2G47230.2 35.507 138 80 4 257 389 5 138 3.32e-15 77.8
Msa0280240 AT1G06340.1 38.686 137 77 4 255 389 1 132 7.74e-20 85.5
Msa0280240 AT1G06340.1 30.303 132 90 2 69 199 2 132 7.21e-14 68.6
Msa0280240 AT1G11420.1 26.048 334 166 13 70 388 7 274 4.68e-19 89.7
Msa0280240 AT1G11420.1 33.813 139 85 3 255 389 5 140 3.90e-12 68.2
Msa0280240 AT5G23800.2 24.484 339 201 9 64 388 6 303 9.90e-19 88.6
Msa0280240 AT5G23800.2 32.639 144 87 5 255 392 10 149 6.91e-12 67.4
Msa0280240 AT5G23800.1 24.484 339 201 9 64 388 6 303 1.59e-18 87.8
Msa0280240 AT5G23800.1 32.639 144 87 5 255 392 10 149 9.96e-12 67.0
Msa0280240 AT3G62300.2 29.630 243 117 7 148 388 97 287 1.47e-15 79.0
Msa0280240 AT3G62300.1 29.630 243 117 7 148 388 97 287 1.56e-15 79.0
Msa0280240 AT1G68580.5 26.882 186 105 6 231 389 284 465 4.95e-11 64.7
Msa0280240 AT1G68580.3 26.882 186 105 6 231 389 234 415 5.45e-11 64.7
Msa0280240 AT1G68580.2 26.882 186 105 6 231 389 330 511 6.86e-11 64.3

Find 103 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCTCCTTTAACTGTTTAT+TGG 0.174482 2_3:+14686225 None:intergenic
AACTATTAAGTATATATTTC+AGG 0.210918 2_3:-14684071 Msa0280240:three_prime_UTR
CAATGTTTGGTTCTTTAAAA+AGG 0.220654 2_3:-14685336 Msa0280240:CDS
AGGATTGGATTGATGGAAAA+TGG 0.222585 2_3:-14685174 Msa0280240:CDS
AAAATCAAATTCAAATTTAC+AGG 0.232618 2_3:-14685583 Msa0280240:CDS
CATAAAATGAAAACTCATTC+AGG 0.240265 2_3:+14684028 None:intergenic
TTTGATTTGCATTTCTATAA+AGG 0.245073 2_3:-14684705 Msa0280240:CDS
AAATGAGCCAAAGTTTAAAA+AGG 0.257575 2_3:-14685551 Msa0280240:CDS
CCTCCTCATGTTCCAATGTT+TGG 0.270790 2_3:-14685349 Msa0280240:CDS
TCCTCCTTTAACTGTTTATT+GGG 0.274090 2_3:+14686226 None:intergenic
AGTGTTGGTCATGGTTTAAA+TGG 0.283503 2_3:-14684417 Msa0280240:CDS
AAATTGAAGCTAAGTTTATT+AGG 0.284838 2_3:-14685378 Msa0280240:CDS
CTTAATAGTTAATAGAAAAT+AGG 0.289476 2_3:+14684084 None:intergenic
AAGACCCAATAAACAGTTAA+AGG 0.297768 2_3:-14686230 Msa0280240:CDS
AAGATGGGTACTTGCTTCTT+TGG 0.301445 2_3:-14684304 Msa0280240:intron
TAAAACGATCTTTGTACATT+TGG 0.305715 2_3:+14683823 None:intergenic
TGCTTTGCACTCTCACGAAT+TGG 0.314940 2_3:+14684768 None:intergenic
TCAAGTATGAGGTTTACTTT+TGG 0.322819 2_3:-14684392 Msa0280240:CDS
ATCTGAGGCCTCATCAATAT+TGG 0.323896 2_3:-14684335 Msa0280240:CDS
TTGATTTGCATTTCTATAAA+GGG 0.329964 2_3:-14684704 Msa0280240:CDS
GTTGTTGATTTATATCAAAA+TGG 0.330419 2_3:-14684621 Msa0280240:CDS
AAGTATATATTTCAGGCTTT+AGG 0.336137 2_3:-14684064 Msa0280240:three_prime_UTR
AGTGAGCCAGTGAAGAAATT+TGG 0.340877 2_3:-14684846 Msa0280240:CDS
GGAAGGCATGGTTGTTGAAT+TGG 0.344273 2_3:-14685275 Msa0280240:CDS
GTGATGTACTATGAAGTAAA+TGG 0.355111 2_3:+14683960 None:intergenic
CCGCATCAGGATTGGATTGA+TGG 0.373376 2_3:-14685181 Msa0280240:CDS
CCTCATCAATATTGGATTGA+TGG 0.382020 2_3:-14684327 Msa0280240:CDS
GTGACGCTGGTGATGCTTGT+TGG 0.387760 2_3:-14686186 Msa0280240:CDS
GAAAGAAGTGGTAGATGTTT+CGG 0.388860 2_3:-14684544 Msa0280240:CDS
AATTTGAATCTTCGAAGTTA+AGG 0.399097 2_3:-14685204 Msa0280240:CDS
ACGATAAGTACTGTATATAC+TGG 0.402899 2_3:-14684735 Msa0280240:CDS
TATAAATCAACAACAATTGC+AGG 0.406409 2_3:+14684630 None:intergenic
TTCGAAGTTAAGGCCGCATC+AGG 0.419250 2_3:-14685194 Msa0280240:CDS
GTCGATATGTGAGGCAAGAA+TGG 0.420390 2_3:-14684485 Msa0280240:CDS
AATATTGGATTGATGGAAGA+TGG 0.435506 2_3:-14684320 Msa0280240:CDS
ATATCAAAATGGAAAGTACT+TGG 0.452193 2_3:-14684610 Msa0280240:CDS
TTGGACTTCAAATGAGGTGC+TGG 0.452394 2_3:-14684373 Msa0280240:CDS
AACAAGGCTATGAAGGTTCA+TGG 0.458231 2_3:-14684656 Msa0280240:CDS
AGTTAAGGCCGCATCAGGAT+TGG 0.460119 2_3:-14685189 Msa0280240:CDS
TGACGCTGGTGATGCTTGTT+GGG 0.466420 2_3:-14686185 Msa0280240:CDS
TTTAAATGGATTCAAGTATG+AGG 0.470895 2_3:-14684403 Msa0280240:CDS
TAAAGTGAATTGTTACTGTC+TGG 0.475384 2_3:-14683865 Msa0280240:three_prime_UTR
TGTTACTGTCTGGTTTAACT+TGG 0.483351 2_3:-14683855 Msa0280240:three_prime_UTR
AGTGATGAACAAGGCTATGA+AGG 0.485294 2_3:-14684663 Msa0280240:CDS
ACATCTCCAAATTTCTTCAC+TGG 0.492066 2_3:+14684840 None:intergenic
TTTGTAACCTTCATCGTCGC+TGG 0.501306 2_3:+14685510 None:intergenic
CATGAAACCAAGAATCTAGC+TGG 0.504009 2_3:-14684813 Msa0280240:CDS
TTGACACATTAGAAAATGAA+AGG 0.516013 2_3:-14685462 Msa0280240:CDS
TGATGGATGGTGGGAAGGCA+TGG 0.519205 2_3:-14685287 Msa0280240:CDS
ATGAAGGTTACAAAGGTGCT+TGG 0.519242 2_3:-14685501 Msa0280240:CDS
AGAGATTTGTTGATGAATGA+TGG 0.520115 2_3:-14685424 Msa0280240:CDS
ATAAAATGAAAACTCATTCA+GGG 0.523602 2_3:+14684029 None:intergenic
AGTGAAGATAACAAAGTGGC+AGG 0.524428 2_3:+14684133 None:intergenic
GTTGATGCATGGTATAATGA+TGG 0.538374 2_3:-14685304 Msa0280240:CDS
ATACAAAAGATGAAGAATGA+AGG 0.542783 2_3:+14683900 None:intergenic
GTTGATGCTTGGTATAATGA+TGG 0.543887 2_3:-14684462 Msa0280240:CDS
GAGGACTACATTGATGTTGT+TGG 0.547236 2_3:-14686208 Msa0280240:CDS
TGATGGATGGTGGGAAGGTG+TGG 0.552224 2_3:-14684445 Msa0280240:CDS
AGGGTTGAAGACTTGATGAA+TGG 0.555092 2_3:-14684183 Msa0280240:exon
GAAGTTACCAGCGACGATGA+AGG 0.558348 2_3:-14685517 Msa0280240:CDS
AAAATAGGAAGCTTGAGTAG+TGG 0.560373 2_3:+14684099 None:intergenic
TGATTTGCATTTCTATAAAG+GGG 0.567511 2_3:-14684703 Msa0280240:CDS
GAACCAAACATTGGAACATG+AGG 0.573234 2_3:+14685346 None:intergenic
ATATTGGATTGATGGAAGAT+GGG 0.574505 2_3:-14684319 Msa0280240:CDS
TCAAAATGGAAAGTACTTGG+TGG 0.574841 2_3:-14684607 Msa0280240:CDS
GGCAAGAATGGGTTGATGCT+TGG 0.576158 2_3:-14684473 Msa0280240:CDS
ATGGTGGATTATTACTTGAG+AGG 0.579467 2_3:-14684164 Msa0280240:three_prime_UTR
GTGGTATCTAGTGTTGGTCA+TGG 0.580431 2_3:-14684426 Msa0280240:CDS
ATTGATGTTGTTGGTGACGC+TGG 0.582200 2_3:-14686199 Msa0280240:CDS
ATGCTTGGTATAATGATGGA+TGG 0.582495 2_3:-14684458 Msa0280240:CDS
TCGATATGTGAGGCAAGAAT+GGG 0.583936 2_3:-14684484 Msa0280240:CDS
TATAATGATGGATGGTGGGA+AGG 0.584080 2_3:-14685292 Msa0280240:CDS
AAAATGGATTATGTCTTCCA+AGG 0.585576 2_3:-14685158 Msa0280240:intron
AACTCAACAGCTGAAAGAAG+TGG 0.586489 2_3:-14684556 Msa0280240:CDS
TGTGGATGATGCTGTTGTGA+TGG 0.591513 2_3:+14686148 None:intergenic
GAAGGTGTGGTATCTAGTGT+TGG 0.592388 2_3:-14684432 Msa0280240:CDS
TATAATGATGGATGGTGGGA+AGG 0.595838 2_3:-14684450 Msa0280240:CDS
GTAAATGTACTGTACATCAA+AGG 0.597700 2_3:+14683938 None:intergenic
ATGCATGGTATAATGATGGA+TGG 0.603392 2_3:-14685300 Msa0280240:CDS
TTGGTATAATGATGGATGGT+GGG 0.603830 2_3:-14684454 Msa0280240:CDS
ATGGTATAATGATGGATGGT+GGG 0.603830 2_3:-14685296 Msa0280240:CDS
CCATCAATCCAATCCTGATG+CGG 0.608956 2_3:+14685181 None:intergenic
GTAAATGGAAGACAATAACT+AGG 0.613441 2_3:+14683975 None:intergenic
TGATCGATATCTGGTGGACG+CGG 0.618992 2_3:+14684513 None:intergenic
GTTGAAGACTTGATGAATGG+TGG 0.624265 2_3:-14684180 Msa0280240:exon
CCAAACATTGGAACATGAGG+AGG 0.626241 2_3:+14685349 None:intergenic
ATCACAACAGCATCATCCAC+AGG 0.626341 2_3:-14686146 Msa0280240:intron
TGCTGTTGTGATGGAAGGAG+AGG 0.628852 2_3:+14686157 None:intergenic
TGTTGTGATGGAAGGAGAGG+TGG 0.630729 2_3:+14686160 None:intergenic
TTTCAGTGAAGATAACAAAG+TGG 0.630991 2_3:+14684129 None:intergenic
GGTTACAAGAAGTTGATGCA+TGG 0.631221 2_3:-14685315 Msa0280240:CDS
AAATCAAATTCAAATTTACA+GGG 0.634056 2_3:-14685582 Msa0280240:CDS
CCATCAATCCAATATTGATG+AGG 0.634309 2_3:+14684327 None:intergenic
CTTGGTATAATGATGGATGG+TGG 0.637939 2_3:-14684455 Msa0280240:CDS
CATGGTATAATGATGGATGG+TGG 0.637939 2_3:-14685297 Msa0280240:CDS
ATTGGAACATGAGGAGGACA+AGG 0.640253 2_3:+14685355 None:intergenic
GTTGTGATGGAAGGAGAGGT+GGG 0.650430 2_3:+14686161 None:intergenic
AATTTGAACATAATCATCTG+AGG 0.655779 2_3:-14684350 Msa0280240:CDS
GATGATGCTGTTGTGATGGA+AGG 0.660461 2_3:+14686152 None:intergenic
ACCCAATAAACAGTTAAAGG+AGG 0.664141 2_3:-14686227 Msa0280240:CDS
AGCGACGATGAAGGTTACAA+AGG 0.679156 2_3:-14685508 Msa0280240:CDS
GATTTGTTGATGAATGATGG+TGG 0.686175 2_3:-14685421 Msa0280240:CDS
GAAGTTAAAAGTGATGAACA+AGG 0.697845 2_3:-14684672 Msa0280240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAATAAAAAAAATAT+AGG + chr2_3:14685168-14685187 None:intergenic 0.0%
!! AAATAAAATAAAAAAAATAT+AGG + chr2_3:14685168-14685187 None:intergenic 0.0%
!!! TTGAATTTGATTTTAACTTT+AGG + chr2_3:14684486-14684505 None:intergenic 15.0%
!! AAAATCAAATTCAAATTTAC+AGG - chr2_3:14684492-14684511 Msa0280240:CDS 15.0%
!! AAATCAAATTCAAATTTACA+GGG - chr2_3:14684493-14684512 Msa0280240:CDS 15.0%
!! CAAATTAATTAACAAATCAA+AGG + chr2_3:14685818-14685837 None:intergenic 15.0%
!! CTTAATAGTTAATAGAAAAT+AGG + chr2_3:14685994-14686013 None:intergenic 15.0%
!! AACTATTAAGTATATATTTC+AGG - chr2_3:14686004-14686023 Msa0280240:intron 15.0%
!!! CATCTTTTGTATTTATTTTT+TGG - chr2_3:14686186-14686205 Msa0280240:CDS 15.0%
!!! TTGAATTTGATTTTAACTTT+AGG + chr2_3:14684486-14684505 None:intergenic 15.0%
!! AAAATCAAATTCAAATTTAC+AGG - chr2_3:14684492-14684511 Msa0280240:CDS 15.0%
!! AAATCAAATTCAAATTTACA+GGG - chr2_3:14684493-14684512 Msa0280240:CDS 15.0%
!! CAAATTAATTAACAAATCAA+AGG + chr2_3:14685818-14685837 None:intergenic 15.0%
!! CTTAATAGTTAATAGAAAAT+AGG + chr2_3:14685994-14686013 None:intergenic 15.0%
!! AACTATTAAGTATATATTTC+AGG - chr2_3:14686004-14686023 Msa0280240:intron 15.0%
!!! CATCTTTTGTATTTATTTTT+TGG - chr2_3:14686186-14686205 Msa0280240:CDS 15.0%
!!! TTTATGTTGGATTAGTTTAA+GGG - chr2_3:14684035-14684054 Msa0280240:three_prime_UTR 20.0%
!!! TAGCTTTTATGTTTATTCAT+AGG - chr2_3:14684234-14684253 Msa0280240:intron 20.0%
!! TTTGCATAAACTGAAAAATA+AGG - chr2_3:14684359-14684378 Msa0280240:CDS 20.0%
!!! AAAATGAGCTTTTTTTTCAA+TGG + chr2_3:14684429-14684448 None:intergenic 20.0%
!! AAATTGAAGCTAAGTTTATT+AGG - chr2_3:14684697-14684716 Msa0280240:CDS 20.0%
!! AAAAAAATATAGGCGAAATT+AGG + chr2_3:14685158-14685177 None:intergenic 20.0%
!!! GGAACAAAATTAATTTTGAA+AGG - chr2_3:14685283-14685302 Msa0280240:CDS 20.0%
!!! TTTGATTTGCATTTCTATAA+AGG - chr2_3:14685370-14685389 Msa0280240:CDS 20.0%
!!! TTGATTTGCATTTCTATAAA+GGG - chr2_3:14685371-14685390 Msa0280240:CDS 20.0%
!!! GTTGTTGATTTATATCAAAA+TGG - chr2_3:14685454-14685473 Msa0280240:CDS 20.0%
!! AAACATTCACATTTAACATT+TGG + chr2_3:14685841-14685860 None:intergenic 20.0%
!! AAATGTTAAATGTGAATGTT+TGG - chr2_3:14685840-14685859 Msa0280240:intron 20.0%
!! ATAAAATGAAAACTCATTCA+GGG + chr2_3:14686049-14686068 None:intergenic 20.0%
!!! TTTATGTTGGATTAGTTTAA+GGG - chr2_3:14684035-14684054 Msa0280240:three_prime_UTR 20.0%
!!! TAGCTTTTATGTTTATTCAT+AGG - chr2_3:14684234-14684253 Msa0280240:intron 20.0%
!! TTTGCATAAACTGAAAAATA+AGG - chr2_3:14684359-14684378 Msa0280240:CDS 20.0%
!!! AAAATGAGCTTTTTTTTCAA+TGG + chr2_3:14684429-14684448 None:intergenic 20.0%
!! AAATTGAAGCTAAGTTTATT+AGG - chr2_3:14684697-14684716 Msa0280240:CDS 20.0%
!! AAAAAAATATAGGCGAAATT+AGG + chr2_3:14685158-14685177 None:intergenic 20.0%
!!! GGAACAAAATTAATTTTGAA+AGG - chr2_3:14685283-14685302 Msa0280240:CDS 20.0%
!!! TTTGATTTGCATTTCTATAA+AGG - chr2_3:14685370-14685389 Msa0280240:CDS 20.0%
!!! TTGATTTGCATTTCTATAAA+GGG - chr2_3:14685371-14685390 Msa0280240:CDS 20.0%
!!! GTTGTTGATTTATATCAAAA+TGG - chr2_3:14685454-14685473 Msa0280240:CDS 20.0%
!! AAACATTCACATTTAACATT+TGG + chr2_3:14685841-14685860 None:intergenic 20.0%
!! AAATGTTAAATGTGAATGTT+TGG - chr2_3:14685840-14685859 Msa0280240:intron 20.0%
!! ATAAAATGAAAACTCATTCA+GGG + chr2_3:14686049-14686068 None:intergenic 20.0%
! ACGATGAAATAGAAACAAAA+AGG + chr2_3:14683982-14684001 None:intergenic 25.0%
! GGAATCAGAAAAATGATTAT+GGG + chr2_3:14684006-14684025 None:intergenic 25.0%
! AGGAATCAGAAAAATGATTA+TGG + chr2_3:14684007-14684026 None:intergenic 25.0%
!! TTCCTTAATGTTGTTTATGT+TGG - chr2_3:14684022-14684041 Msa0280240:three_prime_UTR 25.0%
! ATCCAACATAAACAACATTA+AGG + chr2_3:14684027-14684046 None:intergenic 25.0%
!!! GTTTATGTTGGATTAGTTTA+AGG - chr2_3:14684034-14684053 Msa0280240:three_prime_UTR 25.0%
!!! TTAAACTTTGGCTCATTTTT+TGG + chr2_3:14684522-14684541 None:intergenic 25.0%
! AAATGAGCCAAAGTTTAAAA+AGG - chr2_3:14684524-14684543 Msa0280240:CDS 25.0%
! AATGAGCCAAAGTTTAAAAA+GGG - chr2_3:14684525-14684544 Msa0280240:CDS 25.0%
! TTGACACATTAGAAAATGAA+AGG - chr2_3:14684613-14684632 Msa0280240:CDS 25.0%
!!! CTTTTTAAAGAACCAAACAT+TGG + chr2_3:14684741-14684760 None:intergenic 25.0%
!!! CAATGTTTGGTTCTTTAAAA+AGG - chr2_3:14684739-14684758 Msa0280240:CDS 25.0%
! AATTTGAATCTTCGAAGTTA+AGG - chr2_3:14684871-14684890 Msa0280240:intron 25.0%
!!! AATTTTGAAATGTACCTATC+AGG - chr2_3:14685201-14685220 Msa0280240:CDS 25.0%
!! TGATTTGCATTTCTATAAAG+GGG - chr2_3:14685372-14685391 Msa0280240:CDS 25.0%
! TATAAATCAACAACAATTGC+AGG + chr2_3:14685448-14685467 None:intergenic 25.0%
!!! ATATCAAAATGGAAAGTACT+TGG - chr2_3:14685465-14685484 Msa0280240:CDS 25.0%
!! TTTAAATGGATTCAAGTATG+AGG - chr2_3:14685672-14685691 Msa0280240:intron 25.0%
! AATTTGAACATAATCATCTG+AGG - chr2_3:14685725-14685744 Msa0280240:intron 25.0%
! AAGTATATATTTCAGGCTTT+AGG - chr2_3:14686011-14686030 Msa0280240:intron 25.0%
! CATAAAATGAAAACTCATTC+AGG + chr2_3:14686050-14686069 None:intergenic 25.0%
!! CTGAATGAGTTTTCATTTTA+TGG - chr2_3:14686048-14686067 Msa0280240:intron 25.0%
! ATACAAAAGATGAAGAATGA+AGG + chr2_3:14686178-14686197 None:intergenic 25.0%
! ACGATGAAATAGAAACAAAA+AGG + chr2_3:14683982-14684001 None:intergenic 25.0%
! GGAATCAGAAAAATGATTAT+GGG + chr2_3:14684006-14684025 None:intergenic 25.0%
! AGGAATCAGAAAAATGATTA+TGG + chr2_3:14684007-14684026 None:intergenic 25.0%
!! TTCCTTAATGTTGTTTATGT+TGG - chr2_3:14684022-14684041 Msa0280240:three_prime_UTR 25.0%
! ATCCAACATAAACAACATTA+AGG + chr2_3:14684027-14684046 None:intergenic 25.0%
!!! GTTTATGTTGGATTAGTTTA+AGG - chr2_3:14684034-14684053 Msa0280240:three_prime_UTR 25.0%
!!! TTAAACTTTGGCTCATTTTT+TGG + chr2_3:14684522-14684541 None:intergenic 25.0%
! AAATGAGCCAAAGTTTAAAA+AGG - chr2_3:14684524-14684543 Msa0280240:CDS 25.0%
! AATGAGCCAAAGTTTAAAAA+GGG - chr2_3:14684525-14684544 Msa0280240:CDS 25.0%
! TTGACACATTAGAAAATGAA+AGG - chr2_3:14684613-14684632 Msa0280240:CDS 25.0%
!!! CTTTTTAAAGAACCAAACAT+TGG + chr2_3:14684741-14684760 None:intergenic 25.0%
!!! CAATGTTTGGTTCTTTAAAA+AGG - chr2_3:14684739-14684758 Msa0280240:CDS 25.0%
! AATTTGAATCTTCGAAGTTA+AGG - chr2_3:14684871-14684890 Msa0280240:intron 25.0%
!!! AATTTTGAAATGTACCTATC+AGG - chr2_3:14685201-14685220 Msa0280240:CDS 25.0%
!! TGATTTGCATTTCTATAAAG+GGG - chr2_3:14685372-14685391 Msa0280240:CDS 25.0%
! TATAAATCAACAACAATTGC+AGG + chr2_3:14685448-14685467 None:intergenic 25.0%
!!! ATATCAAAATGGAAAGTACT+TGG - chr2_3:14685465-14685484 Msa0280240:CDS 25.0%
!! TTTAAATGGATTCAAGTATG+AGG - chr2_3:14685672-14685691 Msa0280240:intron 25.0%
! AATTTGAACATAATCATCTG+AGG - chr2_3:14685725-14685744 Msa0280240:intron 25.0%
! AAGTATATATTTCAGGCTTT+AGG - chr2_3:14686011-14686030 Msa0280240:intron 25.0%
! CATAAAATGAAAACTCATTC+AGG + chr2_3:14686050-14686069 None:intergenic 25.0%
!! CTGAATGAGTTTTCATTTTA+TGG - chr2_3:14686048-14686067 Msa0280240:intron 25.0%
! ATACAAAAGATGAAGAATGA+AGG + chr2_3:14686178-14686197 None:intergenic 25.0%
AAGACCCAATAAACAGTTAA+AGG - chr2_3:14683845-14683864 Msa0280240:three_prime_UTR 30.0%
TCCTCCTTTAACTGTTTATT+GGG + chr2_3:14683852-14683871 None:intergenic 30.0%
!! TTTTGTTTGTTTGTTACCTG+TGG + chr2_3:14683948-14683967 None:intergenic 30.0%
CATAGTGTAACAATCATGTT+TGG - chr2_3:14684133-14684152 Msa0280240:three_prime_UTR 30.0%
ACAATCATGTTTGGATTGTT+TGG - chr2_3:14684142-14684161 Msa0280240:three_prime_UTR 30.0%
GAAAAATAAGGCAATCCAAA+TGG - chr2_3:14684371-14684390 Msa0280240:CDS 30.0%
GATCAGTTTAATGATGCTAA+GGG + chr2_3:14684398-14684417 None:intergenic 30.0%
TGATCAGTTTAATGATGCTA+AGG + chr2_3:14684399-14684418 None:intergenic 30.0%
!!! GAGCTTTTTTTTCAATGGAT+TGG + chr2_3:14684424-14684443 None:intergenic 30.0%
! GAAAAAAAAGCTCATTTTGC+AGG - chr2_3:14684431-14684450 Msa0280240:CDS 30.0%
! TTTTTCTTTATCTCTTGTGG+TGG + chr2_3:14684462-14684481 None:intergenic 30.0%
ATGAGCCAAAGTTTAAAAAG+GGG - chr2_3:14684526-14684545 Msa0280240:CDS 30.0%
! ATTTCCCCCTTTTTAAACTT+TGG + chr2_3:14684534-14684553 None:intergenic 30.0%
!! AGAGATTTGTTGATGAATGA+TGG - chr2_3:14684651-14684670 Msa0280240:CDS 30.0%
!! AAAATGGATTATGTCTTCCA+AGG - chr2_3:14684917-14684936 Msa0280240:intron 30.0%
GATAGTCTAATCAAGTCAAA+GGG + chr2_3:14684969-14684988 None:intergenic 30.0%
TGATAGTCTAATCAAGTCAA+AGG + chr2_3:14684970-14684989 None:intergenic 30.0%
TTAATCTGAACTTGTCTGAT+TGG - chr2_3:14685019-14685038 Msa0280240:intron 30.0%
AAATATAGGCGAAATTAGGA+AGG + chr2_3:14685154-14685173 None:intergenic 30.0%
! ACGATAAGTACTGTATATAC+TGG - chr2_3:14685340-14685359 Msa0280240:CDS 30.0%
!!! ATCACTTTTAACTTCTACGT+TGG + chr2_3:14685398-14685417 None:intergenic 30.0%
GAAGTTAAAAGTGATGAACA+AGG - chr2_3:14685403-14685422 Msa0280240:CDS 30.0%
!! ATCATTTTTGTCGATATGTG+AGG - chr2_3:14685581-14685600 Msa0280240:CDS 30.0%
! TCAAGTATGAGGTTTACTTT+TGG - chr2_3:14685683-14685702 Msa0280240:intron 30.0%
!! TTACTTTTGGACTTCAAATG+AGG - chr2_3:14685696-14685715 Msa0280240:intron 30.0%
AATATTGGATTGATGGAAGA+TGG - chr2_3:14685755-14685774 Msa0280240:intron 30.0%
ATATTGGATTGATGGAAGAT+GGG - chr2_3:14685756-14685775 Msa0280240:intron 30.0%
ATCTCATTATGGTTTCTTTC+AGG - chr2_3:14685872-14685891 Msa0280240:intron 30.0%
TCTCATTATGGTTTCTTTCA+GGG - chr2_3:14685873-14685892 Msa0280240:intron 30.0%
TTTCAGTGAAGATAACAAAG+TGG + chr2_3:14685949-14685968 None:intergenic 30.0%
GTAAATGGAAGACAATAACT+AGG + chr2_3:14686103-14686122 None:intergenic 30.0%
GTGATGTACTATGAAGTAAA+TGG + chr2_3:14686118-14686137 None:intergenic 30.0%
GTAAATGTACTGTACATCAA+AGG + chr2_3:14686140-14686159 None:intergenic 30.0%
TAAAGTGAATTGTTACTGTC+TGG - chr2_3:14686210-14686229 Msa0280240:CDS 30.0%
AAGACCCAATAAACAGTTAA+AGG - chr2_3:14683845-14683864 Msa0280240:three_prime_UTR 30.0%
TCCTCCTTTAACTGTTTATT+GGG + chr2_3:14683852-14683871 None:intergenic 30.0%
!! TTTTGTTTGTTTGTTACCTG+TGG + chr2_3:14683948-14683967 None:intergenic 30.0%
CATAGTGTAACAATCATGTT+TGG - chr2_3:14684133-14684152 Msa0280240:three_prime_UTR 30.0%
ACAATCATGTTTGGATTGTT+TGG - chr2_3:14684142-14684161 Msa0280240:three_prime_UTR 30.0%
GAAAAATAAGGCAATCCAAA+TGG - chr2_3:14684371-14684390 Msa0280240:CDS 30.0%
GATCAGTTTAATGATGCTAA+GGG + chr2_3:14684398-14684417 None:intergenic 30.0%
TGATCAGTTTAATGATGCTA+AGG + chr2_3:14684399-14684418 None:intergenic 30.0%
!!! GAGCTTTTTTTTCAATGGAT+TGG + chr2_3:14684424-14684443 None:intergenic 30.0%
! GAAAAAAAAGCTCATTTTGC+AGG - chr2_3:14684431-14684450 Msa0280240:CDS 30.0%
! TTTTTCTTTATCTCTTGTGG+TGG + chr2_3:14684462-14684481 None:intergenic 30.0%
ATGAGCCAAAGTTTAAAAAG+GGG - chr2_3:14684526-14684545 Msa0280240:CDS 30.0%
! ATTTCCCCCTTTTTAAACTT+TGG + chr2_3:14684534-14684553 None:intergenic 30.0%
!! AGAGATTTGTTGATGAATGA+TGG - chr2_3:14684651-14684670 Msa0280240:CDS 30.0%
!! AAAATGGATTATGTCTTCCA+AGG - chr2_3:14684917-14684936 Msa0280240:intron 30.0%
GATAGTCTAATCAAGTCAAA+GGG + chr2_3:14684969-14684988 None:intergenic 30.0%
TGATAGTCTAATCAAGTCAA+AGG + chr2_3:14684970-14684989 None:intergenic 30.0%
TTAATCTGAACTTGTCTGAT+TGG - chr2_3:14685019-14685038 Msa0280240:intron 30.0%
AAATATAGGCGAAATTAGGA+AGG + chr2_3:14685154-14685173 None:intergenic 30.0%
! ACGATAAGTACTGTATATAC+TGG - chr2_3:14685340-14685359 Msa0280240:CDS 30.0%
!!! ATCACTTTTAACTTCTACGT+TGG + chr2_3:14685398-14685417 None:intergenic 30.0%
GAAGTTAAAAGTGATGAACA+AGG - chr2_3:14685403-14685422 Msa0280240:CDS 30.0%
!! ATCATTTTTGTCGATATGTG+AGG - chr2_3:14685581-14685600 Msa0280240:CDS 30.0%
! TCAAGTATGAGGTTTACTTT+TGG - chr2_3:14685683-14685702 Msa0280240:intron 30.0%
!! TTACTTTTGGACTTCAAATG+AGG - chr2_3:14685696-14685715 Msa0280240:intron 30.0%
AATATTGGATTGATGGAAGA+TGG - chr2_3:14685755-14685774 Msa0280240:intron 30.0%
ATATTGGATTGATGGAAGAT+GGG - chr2_3:14685756-14685775 Msa0280240:intron 30.0%
ATCTCATTATGGTTTCTTTC+AGG - chr2_3:14685872-14685891 Msa0280240:intron 30.0%
TCTCATTATGGTTTCTTTCA+GGG - chr2_3:14685873-14685892 Msa0280240:intron 30.0%
TTTCAGTGAAGATAACAAAG+TGG + chr2_3:14685949-14685968 None:intergenic 30.0%
GTAAATGGAAGACAATAACT+AGG + chr2_3:14686103-14686122 None:intergenic 30.0%
GTGATGTACTATGAAGTAAA+TGG + chr2_3:14686118-14686137 None:intergenic 30.0%
GTAAATGTACTGTACATCAA+AGG + chr2_3:14686140-14686159 None:intergenic 30.0%
TAAAGTGAATTGTTACTGTC+TGG - chr2_3:14686210-14686229 Msa0280240:CDS 30.0%
ACCCAATAAACAGTTAAAGG+AGG - chr2_3:14683848-14683867 Msa0280240:three_prime_UTR 35.0%
GTCCTCCTTTAACTGTTTAT+TGG + chr2_3:14683853-14683872 None:intergenic 35.0%
!! TGTTGGATTAGTTTAAGGGT+TGG - chr2_3:14684039-14684058 Msa0280240:three_prime_UTR 35.0%
ATTGTTTGGATTCCTCCATA+GGG - chr2_3:14684156-14684175 Msa0280240:three_prime_UTR 35.0%
!! GGCTTTTTCTTTATCTCTTG+TGG + chr2_3:14684465-14684484 None:intergenic 35.0%
TGAGCCAAAGTTTAAAAAGG+GGG - chr2_3:14684527-14684546 Msa0280240:CDS 35.0%
!! GATTTGTTGATGAATGATGG+TGG - chr2_3:14684654-14684673 Msa0280240:CDS 35.0%
GTTGATGCATGGTATAATGA+TGG - chr2_3:14684771-14684790 Msa0280240:CDS 35.0%
! ATGCATGGTATAATGATGGA+TGG - chr2_3:14684775-14684794 Msa0280240:CDS 35.0%
!! ATGGTATAATGATGGATGGT+GGG - chr2_3:14684779-14684798 Msa0280240:CDS 35.0%
!!! AAGAGTGTTACGTTCGTTTT+AGG - chr2_3:14684832-14684851 Msa0280240:CDS 35.0%
AGGATTGGATTGATGGAAAA+TGG - chr2_3:14684901-14684920 Msa0280240:intron 35.0%
GTCTTCCAAGGTATAATACT+TGG - chr2_3:14684929-14684948 Msa0280240:intron 35.0%
AGAAGCCAAGTATTATACCT+TGG + chr2_3:14684937-14684956 None:intergenic 35.0%
!! CTGATTGGTTTCATTGAAGT+TGG - chr2_3:14685034-14685053 Msa0280240:intron 35.0%
! TAATGTTTACGCTTCTAGCT+AGG - chr2_3:14685072-14685091 Msa0280240:intron 35.0%
! AGGAAGGATAATGAAGCTTT+TGG + chr2_3:14685138-14685157 None:intergenic 35.0%
ACATCTCCAAATTTCTTCAC+TGG + chr2_3:14685238-14685257 None:intergenic 35.0%
! TTTTGTTCCAGCTAGATTCT+TGG + chr2_3:14685272-14685291 None:intergenic 35.0%
!! TCAAAATGGAAAGTACTTGG+TGG - chr2_3:14685468-14685487 Msa0280240:CDS 35.0%
GAAAGAAGTGGTAGATGTTT+CGG - chr2_3:14685531-14685550 Msa0280240:CDS 35.0%
CAAAAATGATCGATATCTGG+TGG + chr2_3:14685571-14685590 None:intergenic 35.0%
CGACAAAAATGATCGATATC+TGG + chr2_3:14685574-14685593 None:intergenic 35.0%
GTTGATGCTTGGTATAATGA+TGG - chr2_3:14685613-14685632 Msa0280240:CDS 35.0%
! ATGCTTGGTATAATGATGGA+TGG - chr2_3:14685617-14685636 Msa0280240:CDS 35.0%
!! TTGGTATAATGATGGATGGT+GGG - chr2_3:14685621-14685640 Msa0280240:CDS 35.0%
!! AGTGTTGGTCATGGTTTAAA+TGG - chr2_3:14685658-14685677 Msa0280240:intron 35.0%
CCATCAATCCAATATTGATG+AGG + chr2_3:14685751-14685770 None:intergenic 35.0%
CCTCATCAATATTGGATTGA+TGG - chr2_3:14685748-14685767 Msa0280240:intron 35.0%
GGCTCTTATTGATCTCATTA+TGG - chr2_3:14685861-14685880 Msa0280240:intron 35.0%
!! ATGGTGGATTATTACTTGAG+AGG - chr2_3:14685911-14685930 Msa0280240:intron 35.0%
AAAATAGGAAGCTTGAGTAG+TGG + chr2_3:14685979-14685998 None:intergenic 35.0%
! TGTTACTGTCTGGTTTAACT+TGG - chr2_3:14686220-14686239 Msa0280240:CDS 35.0%
ACCCAATAAACAGTTAAAGG+AGG - chr2_3:14683848-14683867 Msa0280240:three_prime_UTR 35.0%
GTCCTCCTTTAACTGTTTAT+TGG + chr2_3:14683853-14683872 None:intergenic 35.0%
!! TGTTGGATTAGTTTAAGGGT+TGG - chr2_3:14684039-14684058 Msa0280240:three_prime_UTR 35.0%
ATTGTTTGGATTCCTCCATA+GGG - chr2_3:14684156-14684175 Msa0280240:three_prime_UTR 35.0%
!! GGCTTTTTCTTTATCTCTTG+TGG + chr2_3:14684465-14684484 None:intergenic 35.0%
TGAGCCAAAGTTTAAAAAGG+GGG - chr2_3:14684527-14684546 Msa0280240:CDS 35.0%
!! GATTTGTTGATGAATGATGG+TGG - chr2_3:14684654-14684673 Msa0280240:CDS 35.0%
GTTGATGCATGGTATAATGA+TGG - chr2_3:14684771-14684790 Msa0280240:CDS 35.0%
! ATGCATGGTATAATGATGGA+TGG - chr2_3:14684775-14684794 Msa0280240:CDS 35.0%
!! ATGGTATAATGATGGATGGT+GGG - chr2_3:14684779-14684798 Msa0280240:CDS 35.0%
!!! AAGAGTGTTACGTTCGTTTT+AGG - chr2_3:14684832-14684851 Msa0280240:CDS 35.0%
AGGATTGGATTGATGGAAAA+TGG - chr2_3:14684901-14684920 Msa0280240:intron 35.0%
GTCTTCCAAGGTATAATACT+TGG - chr2_3:14684929-14684948 Msa0280240:intron 35.0%
AGAAGCCAAGTATTATACCT+TGG + chr2_3:14684937-14684956 None:intergenic 35.0%
!! CTGATTGGTTTCATTGAAGT+TGG - chr2_3:14685034-14685053 Msa0280240:intron 35.0%
! TAATGTTTACGCTTCTAGCT+AGG - chr2_3:14685072-14685091 Msa0280240:intron 35.0%
! AGGAAGGATAATGAAGCTTT+TGG + chr2_3:14685138-14685157 None:intergenic 35.0%
ACATCTCCAAATTTCTTCAC+TGG + chr2_3:14685238-14685257 None:intergenic 35.0%
! TTTTGTTCCAGCTAGATTCT+TGG + chr2_3:14685272-14685291 None:intergenic 35.0%
!! TCAAAATGGAAAGTACTTGG+TGG - chr2_3:14685468-14685487 Msa0280240:CDS 35.0%
GAAAGAAGTGGTAGATGTTT+CGG - chr2_3:14685531-14685550 Msa0280240:CDS 35.0%
CAAAAATGATCGATATCTGG+TGG + chr2_3:14685571-14685590 None:intergenic 35.0%
CGACAAAAATGATCGATATC+TGG + chr2_3:14685574-14685593 None:intergenic 35.0%
GTTGATGCTTGGTATAATGA+TGG - chr2_3:14685613-14685632 Msa0280240:CDS 35.0%
! ATGCTTGGTATAATGATGGA+TGG - chr2_3:14685617-14685636 Msa0280240:CDS 35.0%
!! TTGGTATAATGATGGATGGT+GGG - chr2_3:14685621-14685640 Msa0280240:CDS 35.0%
!! AGTGTTGGTCATGGTTTAAA+TGG - chr2_3:14685658-14685677 Msa0280240:intron 35.0%
CCATCAATCCAATATTGATG+AGG + chr2_3:14685751-14685770 None:intergenic 35.0%
CCTCATCAATATTGGATTGA+TGG - chr2_3:14685748-14685767 Msa0280240:intron 35.0%
GGCTCTTATTGATCTCATTA+TGG - chr2_3:14685861-14685880 Msa0280240:intron 35.0%
!! ATGGTGGATTATTACTTGAG+AGG - chr2_3:14685911-14685930 Msa0280240:intron 35.0%
AAAATAGGAAGCTTGAGTAG+TGG + chr2_3:14685979-14685998 None:intergenic 35.0%
! TGTTACTGTCTGGTTTAACT+TGG - chr2_3:14686220-14686239 Msa0280240:CDS 35.0%
GAGGACTACATTGATGTTGT+TGG - chr2_3:14683867-14683886 Msa0280240:three_prime_UTR 40.0%
GATTGTTTGGATTCCTCCAT+AGG - chr2_3:14684155-14684174 Msa0280240:three_prime_UTR 40.0%
TTGAATCCAAACAAGCCCTA+TGG + chr2_3:14684174-14684193 None:intergenic 40.0%
AATGATGCTAAGGGTCCATT+TGG + chr2_3:14684389-14684408 None:intergenic 40.0%
!! ATGAAGGTTACAAAGGTGCT+TGG - chr2_3:14684574-14684593 Msa0280240:CDS 40.0%
GAACCAAACATTGGAACATG+AGG + chr2_3:14684732-14684751 None:intergenic 40.0%
!! GGTTACAAGAAGTTGATGCA+TGG - chr2_3:14684760-14684779 Msa0280240:CDS 40.0%
!! CATGGTATAATGATGGATGG+TGG - chr2_3:14684778-14684797 Msa0280240:CDS 40.0%
!! TATAATGATGGATGGTGGGA+AGG - chr2_3:14684783-14684802 Msa0280240:CDS 40.0%
AGTGAGCCAGTGAAGAAATT+TGG - chr2_3:14685229-14685248 Msa0280240:CDS 40.0%
CATGAAACCAAGAATCTAGC+TGG - chr2_3:14685262-14685281 Msa0280240:CDS 40.0%
AGTGATGAACAAGGCTATGA+AGG - chr2_3:14685412-14685431 Msa0280240:CDS 40.0%
AACAAGGCTATGAAGGTTCA+TGG - chr2_3:14685419-14685438 Msa0280240:CDS 40.0%
AACTCAACAGCTGAAAGAAG+TGG - chr2_3:14685519-14685538 Msa0280240:CDS 40.0%
TCGATATGTGAGGCAAGAAT+GGG - chr2_3:14685591-14685610 Msa0280240:CDS 40.0%
!! CTTGGTATAATGATGGATGG+TGG - chr2_3:14685620-14685639 Msa0280240:CDS 40.0%
!! TATAATGATGGATGGTGGGA+AGG - chr2_3:14684783-14684802 Msa0280240:CDS 40.0%
! ATCTGAGGCCTCATCAATAT+TGG - chr2_3:14685740-14685759 Msa0280240:intron 40.0%
AAGATGGGTACTTGCTTCTT+TGG - chr2_3:14685771-14685790 Msa0280240:intron 40.0%
AGGGTTGAAGACTTGATGAA+TGG - chr2_3:14685892-14685911 Msa0280240:intron 40.0%
GTTGAAGACTTGATGAATGG+TGG - chr2_3:14685895-14685914 Msa0280240:intron 40.0%
AGTGAAGATAACAAAGTGGC+AGG + chr2_3:14685945-14685964 None:intergenic 40.0%
GAGGACTACATTGATGTTGT+TGG - chr2_3:14683867-14683886 Msa0280240:three_prime_UTR 40.0%
GATTGTTTGGATTCCTCCAT+AGG - chr2_3:14684155-14684174 Msa0280240:three_prime_UTR 40.0%
TTGAATCCAAACAAGCCCTA+TGG + chr2_3:14684174-14684193 None:intergenic 40.0%
AATGATGCTAAGGGTCCATT+TGG + chr2_3:14684389-14684408 None:intergenic 40.0%
!! ATGAAGGTTACAAAGGTGCT+TGG - chr2_3:14684574-14684593 Msa0280240:CDS 40.0%
GAACCAAACATTGGAACATG+AGG + chr2_3:14684732-14684751 None:intergenic 40.0%
!! GGTTACAAGAAGTTGATGCA+TGG - chr2_3:14684760-14684779 Msa0280240:CDS 40.0%
!! CATGGTATAATGATGGATGG+TGG - chr2_3:14684778-14684797 Msa0280240:CDS 40.0%
!! TATAATGATGGATGGTGGGA+AGG - chr2_3:14684783-14684802 Msa0280240:CDS 40.0%
AGTGAGCCAGTGAAGAAATT+TGG - chr2_3:14685229-14685248 Msa0280240:CDS 40.0%
CATGAAACCAAGAATCTAGC+TGG - chr2_3:14685262-14685281 Msa0280240:CDS 40.0%
AGTGATGAACAAGGCTATGA+AGG - chr2_3:14685412-14685431 Msa0280240:CDS 40.0%
AACAAGGCTATGAAGGTTCA+TGG - chr2_3:14685419-14685438 Msa0280240:CDS 40.0%
AACTCAACAGCTGAAAGAAG+TGG - chr2_3:14685519-14685538 Msa0280240:CDS 40.0%
TCGATATGTGAGGCAAGAAT+GGG - chr2_3:14685591-14685610 Msa0280240:CDS 40.0%
!! CTTGGTATAATGATGGATGG+TGG - chr2_3:14685620-14685639 Msa0280240:CDS 40.0%
!! TATAATGATGGATGGTGGGA+AGG - chr2_3:14684783-14684802 Msa0280240:CDS 40.0%
! ATCTGAGGCCTCATCAATAT+TGG - chr2_3:14685740-14685759 Msa0280240:intron 40.0%
AAGATGGGTACTTGCTTCTT+TGG - chr2_3:14685771-14685790 Msa0280240:intron 40.0%
AGGGTTGAAGACTTGATGAA+TGG - chr2_3:14685892-14685911 Msa0280240:intron 40.0%
GTTGAAGACTTGATGAATGG+TGG - chr2_3:14685895-14685914 Msa0280240:intron 40.0%
AGTGAAGATAACAAAGTGGC+AGG + chr2_3:14685945-14685964 None:intergenic 40.0%
!! ATTGATGTTGTTGGTGACGC+TGG - chr2_3:14683876-14683895 Msa0280240:three_prime_UTR 45.0%
! GATGATGCTGTTGTGATGGA+AGG + chr2_3:14683926-14683945 None:intergenic 45.0%
TGTGGATGATGCTGTTGTGA+TGG + chr2_3:14683930-14683949 None:intergenic 45.0%
ATCACAACAGCATCATCCAC+AGG - chr2_3:14683929-14683948 Msa0280240:three_prime_UTR 45.0%
! ATTCCTCCATAGGGCTTGTT+TGG - chr2_3:14684165-14684184 Msa0280240:three_prime_UTR 45.0%
AATCCAAACAAGCCCTATGG+AGG + chr2_3:14684171-14684190 None:intergenic 45.0%
TTTGTAACCTTCATCGTCGC+TGG + chr2_3:14684568-14684587 None:intergenic 45.0%
AGCGACGATGAAGGTTACAA+AGG - chr2_3:14684567-14684586 Msa0280240:CDS 45.0%
ATTGGAACATGAGGAGGACA+AGG + chr2_3:14684723-14684742 None:intergenic 45.0%
CCAAACATTGGAACATGAGG+AGG + chr2_3:14684729-14684748 None:intergenic 45.0%
CCTCCTCATGTTCCAATGTT+TGG - chr2_3:14684726-14684745 Msa0280240:CDS 45.0%
! GGAAGGCATGGTTGTTGAAT+TGG - chr2_3:14684800-14684819 Msa0280240:CDS 45.0%
CCATCAATCCAATCCTGATG+CGG + chr2_3:14684897-14684916 None:intergenic 45.0%
TGCTTTGCACTCTCACGAAT+TGG + chr2_3:14685310-14685329 None:intergenic 45.0%
GTCGATATGTGAGGCAAGAA+TGG - chr2_3:14685590-14685609 Msa0280240:CDS 45.0%
! GAAGGTGTGGTATCTAGTGT+TGG - chr2_3:14685643-14685662 Msa0280240:intron 45.0%
!! GTGGTATCTAGTGTTGGTCA+TGG - chr2_3:14685649-14685668 Msa0280240:intron 45.0%
TTGGACTTCAAATGAGGTGC+TGG - chr2_3:14685702-14685721 Msa0280240:intron 45.0%
!! ATTGATGTTGTTGGTGACGC+TGG - chr2_3:14683876-14683895 Msa0280240:three_prime_UTR 45.0%
! GATGATGCTGTTGTGATGGA+AGG + chr2_3:14683926-14683945 None:intergenic 45.0%
TGTGGATGATGCTGTTGTGA+TGG + chr2_3:14683930-14683949 None:intergenic 45.0%
ATCACAACAGCATCATCCAC+AGG - chr2_3:14683929-14683948 Msa0280240:three_prime_UTR 45.0%
! ATTCCTCCATAGGGCTTGTT+TGG - chr2_3:14684165-14684184 Msa0280240:three_prime_UTR 45.0%
AATCCAAACAAGCCCTATGG+AGG + chr2_3:14684171-14684190 None:intergenic 45.0%
TTTGTAACCTTCATCGTCGC+TGG + chr2_3:14684568-14684587 None:intergenic 45.0%
AGCGACGATGAAGGTTACAA+AGG - chr2_3:14684567-14684586 Msa0280240:CDS 45.0%
ATTGGAACATGAGGAGGACA+AGG + chr2_3:14684723-14684742 None:intergenic 45.0%
CCAAACATTGGAACATGAGG+AGG + chr2_3:14684729-14684748 None:intergenic 45.0%
CCTCCTCATGTTCCAATGTT+TGG - chr2_3:14684726-14684745 Msa0280240:CDS 45.0%
! GGAAGGCATGGTTGTTGAAT+TGG - chr2_3:14684800-14684819 Msa0280240:CDS 45.0%
CCATCAATCCAATCCTGATG+CGG + chr2_3:14684897-14684916 None:intergenic 45.0%
TGCTTTGCACTCTCACGAAT+TGG + chr2_3:14685310-14685329 None:intergenic 45.0%
GTCGATATGTGAGGCAAGAA+TGG - chr2_3:14685590-14685609 Msa0280240:CDS 45.0%
! GAAGGTGTGGTATCTAGTGT+TGG - chr2_3:14685643-14685662 Msa0280240:intron 45.0%
!! GTGGTATCTAGTGTTGGTCA+TGG - chr2_3:14685649-14685668 Msa0280240:intron 45.0%
TTGGACTTCAAATGAGGTGC+TGG - chr2_3:14685702-14685721 Msa0280240:intron 45.0%
!!! TTTTATTTTATTTTGTTAAT+TGG - chr2_3:14685175-14685194 Msa0280240:CDS 5.0%
!!! TTTTATTTTATTTTGTTAAT+TGG - chr2_3:14685175-14685194 Msa0280240:CDS 5.0%
! TGACGCTGGTGATGCTTGTT+GGG - chr2_3:14683890-14683909 Msa0280240:three_prime_UTR 50.0%
! GTTGTGATGGAAGGAGAGGT+GGG + chr2_3:14683917-14683936 None:intergenic 50.0%
! TGTTGTGATGGAAGGAGAGG+TGG + chr2_3:14683918-14683937 None:intergenic 50.0%
! TGCTGTTGTGATGGAAGGAG+AGG + chr2_3:14683921-14683940 None:intergenic 50.0%
GAAGTTACCAGCGACGATGA+AGG - chr2_3:14684558-14684577 Msa0280240:CDS 50.0%
TTCGAAGTTAAGGCCGCATC+AGG - chr2_3:14684881-14684900 Msa0280240:intron 50.0%
AGTTAAGGCCGCATCAGGAT+TGG - chr2_3:14684886-14684905 Msa0280240:intron 50.0%
CCGCATCAGGATTGGATTGA+TGG - chr2_3:14684894-14684913 Msa0280240:intron 50.0%
TGGCTCACTTGACTCCTGAT+AGG + chr2_3:14685218-14685237 None:intergenic 50.0%
! TGATCGATATCTGGTGGACG+CGG + chr2_3:14685565-14685584 None:intergenic 50.0%
!! GGCAAGAATGGGTTGATGCT+TGG - chr2_3:14685602-14685621 Msa0280240:CDS 50.0%
! TGACGCTGGTGATGCTTGTT+GGG - chr2_3:14683890-14683909 Msa0280240:three_prime_UTR 50.0%
! GTTGTGATGGAAGGAGAGGT+GGG + chr2_3:14683917-14683936 None:intergenic 50.0%
! TGTTGTGATGGAAGGAGAGG+TGG + chr2_3:14683918-14683937 None:intergenic 50.0%
! TGCTGTTGTGATGGAAGGAG+AGG + chr2_3:14683921-14683940 None:intergenic 50.0%
GAAGTTACCAGCGACGATGA+AGG - chr2_3:14684558-14684577 Msa0280240:CDS 50.0%
TTCGAAGTTAAGGCCGCATC+AGG - chr2_3:14684881-14684900 Msa0280240:intron 50.0%
AGTTAAGGCCGCATCAGGAT+TGG - chr2_3:14684886-14684905 Msa0280240:intron 50.0%
CCGCATCAGGATTGGATTGA+TGG - chr2_3:14684894-14684913 Msa0280240:intron 50.0%
TGGCTCACTTGACTCCTGAT+AGG + chr2_3:14685218-14685237 None:intergenic 50.0%
! TGATCGATATCTGGTGGACG+CGG + chr2_3:14685565-14685584 None:intergenic 50.0%
!! GGCAAGAATGGGTTGATGCT+TGG - chr2_3:14685602-14685621 Msa0280240:CDS 50.0%
! GTGACGCTGGTGATGCTTGT+TGG - chr2_3:14683889-14683908 Msa0280240:three_prime_UTR 55.0%
!! TGATGGATGGTGGGAAGGCA+TGG - chr2_3:14684788-14684807 Msa0280240:CDS 55.0%
!! TGATGGATGGTGGGAAGGTG+TGG - chr2_3:14685630-14685649 Msa0280240:intron 55.0%
! GTGACGCTGGTGATGCTTGT+TGG - chr2_3:14683889-14683908 Msa0280240:three_prime_UTR 55.0%
!! TGATGGATGGTGGGAAGGCA+TGG - chr2_3:14684788-14684807 Msa0280240:CDS 55.0%
!! TGATGGATGGTGGGAAGGTG+TGG - chr2_3:14685630-14685649 Msa0280240:intron 55.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 14683828 14686269 14683828 ID=Msa0280240;Name=Msa0280240
chr2_3 mRNA 14683828 14686269 14683828 ID=Msa0280240-mRNA-1;Parent=Msa0280240;Name=Msa0280240-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.66|0.5|1|0.66|0.75|4|370|394
chr2_3 exon 14683828 14684203 14683828 ID=Msa0280240-mRNA-1:exon:6203;Parent=Msa0280240-mRNA-1
chr2_3 exon 14684305 14684874 14684305 ID=Msa0280240-mRNA-1:exon:6202;Parent=Msa0280240-mRNA-1
chr2_3 exon 14685159 14685644 14685159 ID=Msa0280240-mRNA-1:exon:6201;Parent=Msa0280240-mRNA-1
chr2_3 exon 14686147 14686269 14686147 ID=Msa0280240-mRNA-1:exon:6200;Parent=Msa0280240-mRNA-1
chr2_3 CDS 14686147 14686269 14686147 ID=Msa0280240-mRNA-1:cds;Parent=Msa0280240-mRNA-1
chr2_3 CDS 14685159 14685644 14685159 ID=Msa0280240-mRNA-1:cds;Parent=Msa0280240-mRNA-1
chr2_3 CDS 14684305 14684874 14684305 ID=Msa0280240-mRNA-1:cds;Parent=Msa0280240-mRNA-1
chr2_3 CDS 14684198 14684203 14684198 ID=Msa0280240-mRNA-1:cds;Parent=Msa0280240-mRNA-1
chr2_3 three_prime_UTR 14683828 14684197 14683828 ID=Msa0280240-mRNA-1:three_prime_utr;Parent=Msa0280240-mRNA-1
Gene Sequence

>Msa0280240

ATGCATTCAACACAAAGAAGACCCAATAAACAGTTAAAGGAGGACTACATTGATGTTGTTGGTGACGCTGGTGATGCTTGTTGGGTCCCACCTCTCCTTCCATCACAACAGCATCATCCACAGGATAAACCACCACAAGAGATAAAGAAAAAGCCTAAAGTTAAAATCAAATTCAAATTTACAGGGAAGCCAAAAAATGAGCCAAAGTTTAAAAAGGGGGAAATAGTCGAAGTTACCAGCGACGATGAAGGTTACAAAGGTGCTTGGTTTGTTGCTACTATTATTGACACATTAGAAAATGAAAGGTTTTTAGTTGAACATAGAGATTTGTTGATGAATGATGGTGGCATTGATGTTCTGAAAGAAGAAATTGAAGCTAAGTTTATTAGGCCTTGTCCTCCTCATGTTCCAATGTTTGGTTCTTTAAAAAGGTTACAAGAAGTTGATGCATGGTATAATGATGGATGGTGGGAAGGCATGGTTGTTGAATTGGTGAATAGCGAAGAGTGTTACGTTCGTTTTAGGAACAATGAAGTATTAAAATTTGAATCTTCGAAGTTAAGGCCGCATCAGGATTGGATTGATGGAAAATGGATTATGTCTTCCAAGGAGTCAAGTGAGCCAGTGAAGAAATTTGGAGATGTGATACATGAAACCAAGAATCTAGCTGGAACAAAATTAATTTTGAAAGGTCCAATTCGTGAGAGTGCAAAGCATAATAAAGATACGATAAGTACTGTATATACTGGAAGCAAGTTTGATTTGCATTTCTATAAAGGGGCCAACGTAGAAGTTAAAAGTGATGAACAAGGCTATGAAGGTTCATGGTATCCTGCAATTGTTGTTGATTTATATCAAAATGGAAAGTACTTGGTGGAGTATGTAACTTTGAAAACAGATGACTTAACTCAACAGCTGAAAGAAGTGGTAGATGTTTCGGATATCAGACCGCGTCCACCAGATATCGATCATTTTTGTCGATATGTGAGGCAAGAATGGGTTGATGCTTGGTATAATGATGGATGGTGGGAAGGTGTGGTATCTAGTGTTGGTCATGGTTTAAATGGATTCAAGTATGAGGTTTACTTTTGGACTTCAAATGAGGTGCTGGAATTTGAACATAATCATCTGAGGCCTCATCAATATTGGATTGATGGAAGATGGGTACTTGCTTCTTTGGGTTGA
Protein sequence

>Msa0280240

MHSTQRRPNKQLKEDYIDVVGDAGDACWVPPLLPSQQHHPQDKPPQEIKKKPKVKIKFKFTGKPKNEPKFKKGEIVEVTSDDEGYKGAWFVATIIDTLENERFLVEHRDLLMNDGGIDVLKEEIEAKFIRPCPPHVPMFGSLKRLQEVDAWYNDGWWEGMVVELVNSEECYVRFRNNEVLKFESSKLRPHQDWIDGKWIMSSKESSEPVKKFGDVIHETKNLAGTKLILKGPIRESAKHNKDTISTVYTGSKFDLHFYKGANVEVKSDEQGYEGSWYPAIVVDLYQNGKYLVEYVTLKTDDLTQQLKEVVDVSDIRPRPPDIDHFCRYVRQEWVDAWYNDGWWEGVVSSVGHGLNGFKYEVYFWTSNEVLEFEHNHLRPHQYWIDGRWVLASLG*