AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0574890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0574890 MtrunA17_Chr8g0391771 98.179 604 11 0 1 604 1 604 0.0 1196
Msa0574890 MtrunA17_Chr1g0161371 82.947 604 98 2 1 604 1 599 0.0 963
Msa0574890 MtrunA17_Chr8g0344311 83.224 608 92 5 1 604 1 602 0.0 947
Msa0574890 MtrunA17_Chr4g0076251 49.541 545 230 12 56 573 25 551 1.06e-146 437
Msa0574890 MtrunA17_Chr2g0290411 47.993 548 253 9 57 587 13 545 4.00e-144 429
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0574890 AT1G24764.1 74.359 624 137 8 1 604 1 621 0.0 888
Msa0574890 AT1G24764.3 74.359 624 137 8 1 604 60 680 0.0 884
Msa0574890 AT1G68060.1 75.817 612 126 10 1 597 1 605 0.0 883
Msa0574890 AT1G14840.1 74.497 596 129 10 20 605 11 593 0.0 839
Msa0574890 AT2G01750.1 75.648 579 129 6 30 604 47 617 0.0 820
Msa0574890 AT2G01750.2 75.606 578 129 6 30 603 47 616 0.0 820
Msa0574890 AT1G14840.2 72.148 596 128 11 20 605 11 578 0.0 797
Msa0574890 AT1G24764.2 78.344 471 96 4 137 604 1 468 0.0 728
Msa0574890 AT4G17220.1 46.503 529 235 6 57 578 6 493 1.51e-134 404

Find 153 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACGGTTTCCGGATCGTTTA+AGG 0.181490 4_1:+78636068 Msa0574890:CDS
CCGGTGCCGTTGACGGTTTC+CGG 0.215030 4_1:+78636057 Msa0574890:CDS
CCAGGAGGAAAACAAAATTT+TGG 0.247069 4_1:+78637721 Msa0574890:intron
CTTTCTCTGTCACACAGTTT+TGG 0.249206 4_1:+78635665 Msa0574890:five_prime_UTR
AGGAGTAAAATTCTTCTAAA+TGG 0.256803 4_1:+78638688 Msa0574890:CDS
TGTTTCATACTACTGGTTAA+TGG 0.257749 4_1:-78635870 None:intergenic
ACAAAGAGGAAAACAATAAT+TGG 0.267719 4_1:+78638758 Msa0574890:CDS
CAATAATTGGAAAGGAAGTT+TGG 0.278285 4_1:+78638771 Msa0574890:CDS
CCTCTAGTTCCCTGACAGTT+TGG 0.279717 4_1:-78637787 None:intergenic
CTCTAGTTCCCTGACAGTTT+GGG 0.283034 4_1:-78637786 None:intergenic
CTAGAGGAGGCTGTCCTTGC+AGG 0.298621 4_1:+78637803 Msa0574890:CDS
TACTCTGTTTGCTGTTACCT+TGG 0.304652 4_1:-78638023 None:intergenic
CTTTGTGTATTCGTAGCATT+TGG 0.305525 4_1:+78635942 Msa0574890:five_prime_UTR
GCTCAGCAACAGCTTGTTAC+TGG 0.317278 4_1:+78639208 Msa0574890:CDS
TGCCTCAACTTCCATAGCTT+TGG 0.325019 4_1:-78639068 None:intergenic
AGCCATTCTAGCTCCTTTAG+AGG 0.326419 4_1:+78637286 Msa0574890:CDS
GGACCGTCTTACGAAATCTA+AGG 0.330608 4_1:+78637484 Msa0574890:CDS
CATGAACTTGCTTCATGGTT+CGG 0.340177 4_1:+78636155 Msa0574890:CDS
ATATCCAAACCCAACTCTAA+TGG 0.348727 4_1:+78638547 Msa0574890:CDS
TGTTGCTGAGCACTGTTCAT+AGG 0.349019 4_1:-78639196 None:intergenic
GCCTTCCCGACGACAATCCC+TGG 0.358957 4_1:+78638510 Msa0574890:CDS
GAACATCATCCTTTCAAATA+AGG 0.359369 4_1:+78638584 Msa0574890:CDS
ATCATCCACCATGGAGGCCT+TGG 0.362971 4_1:-78637552 None:intergenic
GATATAGAGGATAATGTTCC+AGG 0.366472 4_1:+78638823 Msa0574890:CDS
GCATTCGATGAGACCTAGTT+TGG 0.367879 4_1:+78636119 Msa0574890:CDS
TCTACTAATGGCAAGTCATT+TGG 0.371972 4_1:-78638802 None:intergenic
TGAAGAGCGACGATTCTTGC+AGG 0.372497 4_1:+78638111 Msa0574890:CDS
TCGTCTGAGTGGTTTCGTTT+TGG 0.381626 4_1:+78635969 Msa0574890:five_prime_UTR
GGGAGAGATGCAGCAACTTC+GGG 0.383230 4_1:+78638250 Msa0574890:intron
GAGAGATTGTTTCATACTAC+TGG 0.385184 4_1:-78635877 None:intergenic
TGAAGCTGAAAGGACTGTTC+AGG 0.393847 4_1:+78637520 Msa0574890:CDS
AAACCCATTAGAGTTGGGTT+TGG 0.396024 4_1:-78638551 None:intergenic
GAGTTCATGAACTTGCTTCA+TGG 0.400786 4_1:+78636150 Msa0574890:CDS
GAAGAATTGTCGAAGGTAGA+TGG 0.401031 4_1:+78637012 Msa0574890:CDS
TTATCCTCTATATCTACTAA+TGG 0.416061 4_1:-78638814 None:intergenic
TGGTTCGGATCCAGTGAAAC+TGG 0.417554 4_1:+78636170 Msa0574890:CDS
TATCCAAACCCAACTCTAAT+GGG 0.418318 4_1:+78638548 Msa0574890:CDS
TGTTCAGGTTGCCTTGGCCA+AGG 0.418461 4_1:+78637535 Msa0574890:CDS
CGACTTGAGAATGATGTTAG+AGG 0.418672 4_1:+78636201 Msa0574890:CDS
AAAAGCTCACCCAAACTGTC+AGG 0.427752 4_1:+78637777 Msa0574890:CDS
TCAAGATGATAACAGAGCTT+TGG 0.430655 4_1:+78637463 Msa0574890:CDS
CTATAGTTCTTTCAGAAGAC+TGG 0.433038 4_1:-78638735 None:intergenic
GTCAGAAACCCATTAGAGTT+GGG 0.435909 4_1:-78638556 None:intergenic
GGTGACGCCGGTGCCGTTGA+CGG 0.437292 4_1:+78636050 Msa0574890:CDS
TGCCTTGGCCAAGGCCTCCA+TGG 0.440738 4_1:+78637544 Msa0574890:CDS
TGAGTTTGTGTATGAATGAA+TGG 0.447298 4_1:-78635708 None:intergenic
CTTCACATTGCTGAAACGCT+TGG 0.448038 4_1:-78639170 None:intergenic
TGATAATGAGTTTGATAACA+TGG 0.461490 4_1:-78635611 None:intergenic
AGGGAGAGATGCAGCAACTT+CGG 0.463109 4_1:+78638249 Msa0574890:intron
TCTATATGTGTTTCTGTACA+AGG 0.465058 4_1:+78639379 Msa0574890:three_prime_UTR
CGATTAAGCTCCAGTTTCAC+TGG 0.465244 4_1:-78636180 None:intergenic
TTTCCCTTCCTTAAACGATC+CGG 0.468302 4_1:-78636076 None:intergenic
GGAGCTAGAATGGCTTCTAT+AGG 0.468769 4_1:-78637278 None:intergenic
CTTGCCATTAGTAGATATAG+AGG 0.469171 4_1:+78638810 Msa0574890:CDS
CGTCGGCGTAGGATAGCAAA+TGG 0.469860 4_1:-78635538 None:intergenic
AGCATTCTTCAAAATTGAGC+TGG 0.473860 4_1:-78638620 None:intergenic
GTTGCTGAGCACTGTTCATA+GGG 0.474288 4_1:-78639195 None:intergenic
CTGTAGTAGTGGCTAATGAA+TGG 0.479204 4_1:+78638047 Msa0574890:CDS
GTCGGCGTAGGATAGCAAAT+GGG 0.483006 4_1:-78635537 None:intergenic
GTATGATTTGCTGCAGAAAG+AGG 0.486051 4_1:+78638852 Msa0574890:CDS
AGGGAAAATGTGTTAGCAAT+GGG 0.489064 4_1:+78638488 Msa0574890:CDS
TGATGGTGGCTCTAGGTCAC+TGG 0.489643 4_1:+78638663 Msa0574890:CDS
GACTGGTTAAACGACGAACT+TGG 0.490549 4_1:-78638718 None:intergenic
AGTCAGAAACCCATTAGAGT+TGG 0.493992 4_1:-78638557 None:intergenic
CACCATGGAGGCCTTGGCCA+AGG 0.496680 4_1:-78637546 None:intergenic
GTCCTAGTGTTGAGGAAAGC+TGG 0.499161 4_1:+78638874 Msa0574890:CDS
AAGGACTGTTCAGGTTGCCT+TGG 0.499232 4_1:+78637529 Msa0574890:CDS
AGCCTCTAAAGGAGCTAGAA+TGG 0.499413 4_1:-78637288 None:intergenic
AACTCATCCGCATCCAAACT+AGG 0.505439 4_1:-78636132 None:intergenic
CTCAGCAACAGCTTGTTACT+GGG 0.513643 4_1:+78639209 Msa0574890:CDS
TTGAGGCAAAGAAGATGCGA+AGG 0.515230 4_1:+78639083 Msa0574890:CDS
CCGGAAACCGTCAACGGCAC+CGG 0.518335 4_1:-78636057 None:intergenic
TTCCACCCAGGGATTGTCGT+CGG 0.518701 4_1:-78638516 None:intergenic
AGGCTGAACTCAAGCTTGCT+CGG 0.519693 4_1:+78637306 Msa0574890:CDS
AGCTTGAGTTCAGCCTCTAA+AGG 0.520147 4_1:-78637299 None:intergenic
GGCATCAGTGAGATCGGCGA+TGG 0.521449 4_1:+78635990 Msa0574890:exon
GATAATGAGTTTGATAACAT+GGG 0.522679 4_1:-78635610 None:intergenic
TCCACCCAGGGATTGTCGTC+GGG 0.522810 4_1:-78638515 None:intergenic
AACTGCTGCAAACTAAATTC+AGG 0.526640 4_1:-78639421 None:intergenic
TATTAATCGCGGCACTTCAG+AGG 0.534381 4_1:+78638468 Msa0574890:CDS
GCATAGACTGAAGGTGGCAG+AGG 0.535525 4_1:+78637751 Msa0574890:CDS
GGATACATTGACCAAAGCTA+TGG 0.536322 4_1:+78639057 Msa0574890:CDS
AAGGGTCCATGCTGCTCAGA+AGG 0.536406 4_1:+78637241 Msa0574890:CDS
CCCAGGGATTGTCGTCGGGA+AGG 0.537826 4_1:-78638511 None:intergenic
GCGAAGGGAGGTAGCTGTCA+TGG 0.538751 4_1:+78639099 Msa0574890:CDS
CTTATAACACCTCTACAAGA+AGG 0.540610 4_1:+78635512 None:intergenic
CACAGAGGACCTTATTTGAA+AGG 0.541508 4_1:-78638593 None:intergenic
GAAACAGATTGAGATTTGCC+AGG 0.542161 4_1:+78637601 Msa0574890:CDS
CAGCTGAAGCTACTCTTCGA+AGG 0.542966 4_1:+78637222 Msa0574890:CDS
CTACGCCGACGAACATTGCA+TGG 0.545731 4_1:+78635550 Msa0574890:five_prime_UTR
TAATTACTTGAAATAAACAT+TGG 0.546888 4_1:-78639355 None:intergenic
CGGTTCCATTCCCACGTCAC+CGG 0.547668 4_1:-78636022 None:intergenic
TTGCAGCAGCACCGCCTGCA+AGG 0.549043 4_1:-78637817 None:intergenic
CATGCAATGTTCGTCGGCGT+AGG 0.550422 4_1:-78635549 None:intergenic
ATTAATCGCGGCACTTCAGA+GGG 0.552798 4_1:+78638469 Msa0574890:CDS
TGAAAGAACTATAGACAAAG+AGG 0.552858 4_1:+78638744 Msa0574890:CDS
CTTCCTTAGATTTCGTAAGA+CGG 0.553947 4_1:-78637487 None:intergenic
GAGGGAAAATGTGTTAGCAA+TGG 0.554350 4_1:+78638487 Msa0574890:CDS
TGGTTAAACGACGAACTTGG+AGG 0.554388 4_1:-78638715 None:intergenic
CAGCACTTCTTGAAGCTGAA+AGG 0.556835 4_1:+78637510 Msa0574890:CDS
AGCAAATCATACAAAACTCC+TGG 0.558030 4_1:-78638841 None:intergenic
CCTTCCCGACGACAATCCCT+GGG 0.558801 4_1:+78638511 Msa0574890:CDS
TCGGGAGTTGGCTCGTGCCA+AGG 0.564508 4_1:+78638006 Msa0574890:CDS
CATTTGGATGTTCGTCTGAG+TGG 0.567631 4_1:+78635958 Msa0574890:five_prime_UTR
TATGCTATCTGTTCCACCCA+GGG 0.568259 4_1:-78638527 None:intergenic
AGATAAAGACGATGCCATTG+AGG 0.568782 4_1:+78638921 Msa0574890:CDS
TTTCCGGATCGTTTAAGGAA+GGG 0.568827 4_1:+78636073 Msa0574890:CDS
AAACAGAGTAGCTGTAGTAG+TGG 0.569015 4_1:+78638036 Msa0574890:CDS
GGAACCGACGGTGGTGACGC+CGG 0.569709 4_1:+78636038 Msa0574890:CDS
GAGGAAAACAATAATTGGAA+AGG 0.570719 4_1:+78638763 Msa0574890:CDS
GAGTGATTATGATTAAAGAA+AGG 0.572435 4_1:-78635767 None:intergenic
GTTTCCGGATCGTTTAAGGA+AGG 0.572546 4_1:+78636072 Msa0574890:CDS
GGAGGTAGCTGTCATGGAGA+AGG 0.573439 4_1:+78639105 Msa0574890:CDS
GACCAAAGCTATGGAAGTTG+AGG 0.577831 4_1:+78639066 Msa0574890:CDS
GGAGGTGGCTGCAATGCGCG+TGG 0.579154 4_1:+78639126 Msa0574890:CDS
AACGATCCGGAAACCGTCAA+CGG 0.580826 4_1:-78636063 None:intergenic
GATGAGACCTAGTTTGGATG+CGG 0.582124 4_1:+78636125 Msa0574890:CDS
AACTGTCAGGGAACTAGAGG+AGG 0.584056 4_1:+78637790 Msa0574890:CDS
AGCTGTCATGGAGAAGGAGG+TGG 0.586105 4_1:+78639111 Msa0574890:CDS
GCTAGAATGGCTTCTATAGG+AGG 0.588125 4_1:-78637275 None:intergenic
GAGGAGGCTGTCCTTGCAGG+CGG 0.590371 4_1:+78637806 Msa0574890:CDS
CGTCATCCTTCTGAGCAGCA+TGG 0.593027 4_1:-78637247 None:intergenic
ATTCTTCAAAATTGAGCTGG+AGG 0.593608 4_1:-78638617 None:intergenic
AAATGGGGCCCTTCTTGTAG+AGG 0.593712 4_1:-78635521 None:intergenic
GGTAGCTGTCATGGAGAAGG+AGG 0.598076 4_1:+78639108 Msa0574890:CDS
TGATGAAAAGAAAGCATCGA+TGG 0.599203 4_1:+78637187 Msa0574890:CDS
ATAATGAGTTTGATAACATG+GGG 0.599910 4_1:-78635609 None:intergenic
TTATAACACCTCTACAAGAA+GGG 0.607311 4_1:+78635513 None:intergenic
AGCTGAAGCTACTCTTCGAA+GGG 0.608327 4_1:+78637223 Msa0574890:CDS
GGACAGAATGCATAGACTGA+AGG 0.608459 4_1:+78637742 Msa0574890:CDS
CAGAATGCATAGACTGAAGG+TGG 0.610746 4_1:+78637745 Msa0574890:CDS
GCACTCCATGCAATGTTCGT+CGG 0.610987 4_1:-78635555 None:intergenic
ACTCAAGCTTGCTCGGCAAG+AGG 0.612136 4_1:+78637313 Msa0574890:CDS
CTTGGCCAAGGCCTCCATGG+TGG 0.617740 4_1:+78637547 Msa0574890:CDS
GGCACCGGCGTCACCACCGT+CGG 0.624819 4_1:-78636042 None:intergenic
GTGGCTCTAGGTCACTGGAA+AGG 0.628966 4_1:+78638668 Msa0574890:CDS
CCAAACTGTCAGGGAACTAG+AGG 0.629519 4_1:+78637787 Msa0574890:CDS
GACCAGCTTTCCTCAACACT+AGG 0.630129 4_1:-78638876 None:intergenic
GCTTACTGAAGAATTGTCGA+AGG 0.641029 4_1:+78637005 Msa0574890:intron
ATATGCTATCTGTTCCACCC+AGG 0.641087 4_1:-78638528 None:intergenic
AAAGCTCACCCAAACTGTCA+GGG 0.642656 4_1:+78637778 Msa0574890:CDS
AGAAAGAGGTCCTAGTGTTG+AGG 0.642915 4_1:+78638866 Msa0574890:CDS
TCGGCGTAGGATAGCAAATG+GGG 0.649349 4_1:-78635536 None:intergenic
GGCAAAGAAGATGCGAAGGG+AGG 0.650499 4_1:+78639087 Msa0574890:CDS
TGAGGCAAAGAAGATGCGAA+GGG 0.652267 4_1:+78639084 Msa0574890:CDS
AAGTGATGCCTGTAAAACAA+TGG 0.658150 4_1:+78638086 Msa0574890:CDS
TGACGTGGGAATGGAACCGA+CGG 0.658829 4_1:+78636026 Msa0574890:CDS
AATTGAGCTGGAGGACACAG+AGG 0.682767 4_1:-78638608 None:intergenic
TTGGAGATCATCCACCATGG+AGG 0.693889 4_1:-78637558 None:intergenic
TCCCGACGACAATCCCTGGG+TGG 0.703158 4_1:+78638514 Msa0574890:CDS
AGCAACAGCTTGTTACTGGG+AGG 0.709426 4_1:+78639212 Msa0574890:CDS
ACTTCTAACAGTATTAATCG+CGG 0.716319 4_1:+78638457 Msa0574890:CDS
CGTGGGAATGGAACCGACGG+TGG 0.718391 4_1:+78636029 Msa0574890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTCTTACTAATTT+TGG + chr4_1:78636479-78636498 Msa0574890:intron 10.0%
!! AAAAATCATTACAACAATTA+AGG - chr4_1:78636736-78636755 None:intergenic 15.0%
!! TGATTAATAAATTATGACAA+AGG - chr4_1:78636911-78636930 None:intergenic 15.0%
!! ATTCAAAATAGGAAAAAATA+AGG - chr4_1:78637348-78637367 None:intergenic 15.0%
!!! TTATTTTTTCCTATTTTGAA+TGG + chr4_1:78637347-78637366 Msa0574890:intron 15.0%
!! TAATTACTTGAAATAAACAT+TGG - chr4_1:78639358-78639377 None:intergenic 15.0%
!! AAATTAATATCACCAAACAA+TGG - chr4_1:78636591-78636610 None:intergenic 20.0%
!! TTTAATATCACATATGTAAG+CGG + chr4_1:78636615-78636634 Msa0574890:intron 20.0%
!! TACAAAACCAACAAATAAAT+CGG - chr4_1:78636675-78636694 None:intergenic 20.0%
!!! ATTTTTTACCCAGTAATTAT+TGG + chr4_1:78636750-78636769 Msa0574890:intron 20.0%
!!! ATTTTCAAGCTAACAAATTA+AGG - chr4_1:78636958-78636977 None:intergenic 20.0%
!! ACAAAAAAGTTACATCATTA+TGG - chr4_1:78637678-78637697 None:intergenic 20.0%
!! TAAAATATGGAAACTGTTAA+AGG - chr4_1:78638212-78638231 None:intergenic 20.0%
!! GAATATGGTTCAATAAAATA+TGG - chr4_1:78638225-78638244 None:intergenic 20.0%
!!! TTTTTCCTGAAAATTGTAAA+AGG - chr4_1:78638395-78638414 None:intergenic 20.0%
!! TTCAGGAAAAATATCAATTA+CGG + chr4_1:78638404-78638423 Msa0574890:intron 20.0%
!! GGGTTTTTATCATTTAAACT+TGG - chr4_1:78635592-78635611 None:intergenic 25.0%
!! ATAATGAGTTTGATAACATG+GGG - chr4_1:78635612-78635631 None:intergenic 25.0%
!! GATAATGAGTTTGATAACAT+GGG - chr4_1:78635613-78635632 None:intergenic 25.0%
!! TGATAATGAGTTTGATAACA+TGG - chr4_1:78635614-78635633 None:intergenic 25.0%
! GAGTGATTATGATTAAAGAA+AGG - chr4_1:78635770-78635789 None:intergenic 25.0%
!!! TTTTCGTTTTCGTTTGTTAA+CGG - chr4_1:78635798-78635817 None:intergenic 25.0%
!!! TAACCATCTGATCTTTTTTT+TGG - chr4_1:78636874-78636893 None:intergenic 25.0%
! TGATCTCCAAAATAAAAATC+AGG + chr4_1:78637571-78637590 Msa0574890:CDS 25.0%
!!! TTAGCTCCTGATTTTTATTT+TGG - chr4_1:78637580-78637599 None:intergenic 25.0%
!!! TGATGTAACTTTTTTGTACT+TGG + chr4_1:78637681-78637700 Msa0574890:intron 25.0%
! CAACAAAGGATTAAATACAA+AGG - chr4_1:78638160-78638179 None:intergenic 25.0%
! TTATTGAACCATATTCTTAC+AGG + chr4_1:78638229-78638248 Msa0574890:intron 25.0%
! TATTGAACCATATTCTTACA+GGG + chr4_1:78638230-78638249 Msa0574890:intron 25.0%
! CACAGTTAAAAGTAATAATC+TGG + chr4_1:78638312-78638331 Msa0574890:intron 25.0%
!! GTAAACCTTTTACAATTTTC+AGG + chr4_1:78638387-78638406 Msa0574890:intron 25.0%
!!! TCAATTTTGAAGAATGCTAA+AGG + chr4_1:78638625-78638644 Msa0574890:CDS 25.0%
! AGGAGTAAAATTCTTCTAAA+TGG + chr4_1:78638688-78638707 Msa0574890:CDS 25.0%
! ACAAAGAGGAAAACAATAAT+TGG + chr4_1:78638758-78638777 Msa0574890:CDS 25.0%
! TTATCCTCTATATCTACTAA+TGG - chr4_1:78638817-78638836 None:intergenic 25.0%
! AAAAAGATTACTAACCTCAA+TGG - chr4_1:78638938-78638957 None:intergenic 25.0%
!! GTAATCTTTTTAAACCTGTT+TGG + chr4_1:78638947-78638966 Msa0574890:intron 25.0%
! ACTAAGATTAAAATCCAAAC+AGG - chr4_1:78638964-78638983 None:intergenic 25.0%
! ACAATTAACTAAGATTGCAA+TGG - chr4_1:78638998-78639017 None:intergenic 25.0%
! ATCTTAGTTAATTGTTGCAA+TGG + chr4_1:78639003-78639022 Msa0574890:intron 25.0%
TGAGTTTGTGTATGAATGAA+TGG - chr4_1:78635711-78635730 None:intergenic 30.0%
! TGTTTCATACTACTGGTTAA+TGG - chr4_1:78635873-78635892 None:intergenic 30.0%
!!! CTTTTTTACAAGCCATTGTT+TGG + chr4_1:78636576-78636595 Msa0574890:intron 30.0%
ATGTAAGCGGTAATTATGTT+TGG + chr4_1:78636628-78636647 Msa0574890:intron 30.0%
TGTAAGCGGTAATTATGTTT+GGG + chr4_1:78636629-78636648 Msa0574890:intron 30.0%
ATTAAGCGCCAATAATTACT+GGG - chr4_1:78636761-78636780 None:intergenic 30.0%
TGCATTGTTTATAGATCAGA+TGG + chr4_1:78636816-78636835 Msa0574890:intron 30.0%
TTTATAGATCAGATGGTTAC+TGG + chr4_1:78636823-78636842 Msa0574890:intron 30.0%
!!! TCTGATCTTTTTTTTGGTAG+TGG - chr4_1:78636868-78636887 None:intergenic 30.0%
CTACCAAAAAAAAGATCAGA+TGG + chr4_1:78636868-78636887 Msa0574890:intron 30.0%
CAGAAACTACCATTCAAAAT+AGG - chr4_1:78637359-78637378 None:intergenic 30.0%
TAGTTTCTGTGTGAAAATAC+CGG + chr4_1:78637370-78637389 Msa0574890:intron 30.0%
CATAAAAGATTGCAAATACC+TGG - chr4_1:78637622-78637641 None:intergenic 30.0%
!!! CAAAATTTTGTTTTCCTCCT+GGG - chr4_1:78637723-78637742 None:intergenic 30.0%
! TCTAGTTAAGAGTTTTTGCA+TGG + chr4_1:78637946-78637965 Msa0574890:intron 30.0%
! CTAGTTAAGAGTTTTTGCAT+GGG + chr4_1:78637947-78637966 Msa0574890:intron 30.0%
AAGAAAGAAAAACTCTCGAT+CGG + chr4_1:78637987-78638006 Msa0574890:CDS 30.0%
ACTTAAAGACAAAGCAACAA+AGG - chr4_1:78638174-78638193 None:intergenic 30.0%
AAAAGGTTTACCTTGAGTAA+TGG - chr4_1:78638378-78638397 None:intergenic 30.0%
ACTTCTAACAGTATTAATCG+CGG + chr4_1:78638457-78638476 Msa0574890:CDS 30.0%
GAACATCATCCTTTCAAATA+AGG + chr4_1:78638584-78638603 Msa0574890:CDS 30.0%
TGAAAGAACTATAGACAAAG+AGG + chr4_1:78638744-78638763 Msa0574890:CDS 30.0%
GAGGAAAACAATAATTGGAA+AGG + chr4_1:78638763-78638782 Msa0574890:CDS 30.0%
CAATAATTGGAAAGGAAGTT+TGG + chr4_1:78638771-78638790 Msa0574890:CDS 30.0%
! GGTACTTCTTTTTCTCTTTT+TGG + chr4_1:78639233-78639252 Msa0574890:CDS 30.0%
!!! CTTGCTTTTTTTCTGAAACT+AGG + chr4_1:78639294-78639313 Msa0574890:exon 30.0%
! TCTATATGTGTTTCTGTACA+AGG + chr4_1:78639379-78639398 Msa0574890:three_prime_UTR 30.0%
GAGAGATTGTTTCATACTAC+TGG - chr4_1:78635880-78635899 None:intergenic 35.0%
CTTTGTGTATTCGTAGCATT+TGG + chr4_1:78635942-78635961 Msa0574890:five_prime_UTR 35.0%
GTTCTATGTGTTTGCAGATA+AGG + chr4_1:78636292-78636311 Msa0574890:intron 35.0%
TAGAGAAAAAGCTGTTGAAG+AGG + chr4_1:78636373-78636392 Msa0574890:CDS 35.0%
CCAAAATTATCATGCCGTTA+CGG + chr4_1:78636443-78636462 Msa0574890:intron 35.0%
TTATGTTTGGGCTGAATTAC+AGG + chr4_1:78636641-78636660 Msa0574890:intron 35.0%
TATGTTTGGGCTGAATTACA+GGG + chr4_1:78636642-78636661 Msa0574890:intron 35.0%
GATTAAGCGCCAATAATTAC+TGG - chr4_1:78636762-78636781 None:intergenic 35.0%
!!! ATCTTTTTTTTGGTAGTGGC+CGG - chr4_1:78636864-78636883 None:intergenic 35.0%
! CTAGAAAGCAAAGTATTTCC+TGG + chr4_1:78637060-78637079 Msa0574890:intron 35.0%
ACATCTCTAACGTTTGATAG+AGG - chr4_1:78637088-78637107 None:intergenic 35.0%
GTAAACACATCACAACATGA+AGG - chr4_1:78637124-78637143 None:intergenic 35.0%
!! TGATGAAAAGAAAGCATCGA+TGG + chr4_1:78637187-78637206 Msa0574890:CDS 35.0%
! TGTGTGAAAATACCGGTTAA+AGG + chr4_1:78637377-78637396 Msa0574890:intron 35.0%
! GTGTGAAAATACCGGTTAAA+GGG + chr4_1:78637378-78637397 Msa0574890:intron 35.0%
TCAAGATGATAACAGAGCTT+TGG + chr4_1:78637463-78637482 Msa0574890:CDS 35.0%
CTTCCTTAGATTTCGTAAGA+CGG - chr4_1:78637490-78637509 None:intergenic 35.0%
!!! CCAAAATTTTGTTTTCCTCC+TGG - chr4_1:78637724-78637743 None:intergenic 35.0%
! CCAGGAGGAAAACAAAATTT+TGG + chr4_1:78637721-78637740 Msa0574890:intron 35.0%
AAAATCAAGAGTGAAGCAAC+TGG - chr4_1:78637915-78637934 None:intergenic 35.0%
AGAAAGAAAAACTCTCGATC+GGG + chr4_1:78637988-78638007 Msa0574890:CDS 35.0%
AAGTGATGCCTGTAAAACAA+TGG + chr4_1:78638086-78638105 Msa0574890:CDS 35.0%
!! TCTTCAAGCCATTGTTTTAC+AGG - chr4_1:78638097-78638116 None:intergenic 35.0%
CAACCTGCATGTATTAACTT+AGG + chr4_1:78638340-78638359 Msa0574890:intron 35.0%
TCTCCTAAGTTAATACATGC+AGG - chr4_1:78638346-78638365 None:intergenic 35.0%
ATAAGTTCTGCCATTACTCA+AGG + chr4_1:78638365-78638384 Msa0574890:intron 35.0%
AGGGAAAATGTGTTAGCAAT+GGG + chr4_1:78638488-78638507 Msa0574890:CDS 35.0%
ATATCCAAACCCAACTCTAA+TGG + chr4_1:78638547-78638566 Msa0574890:CDS 35.0%
TATCCAAACCCAACTCTAAT+GGG + chr4_1:78638548-78638567 Msa0574890:CDS 35.0%
ATTCTTCAAAATTGAGCTGG+AGG - chr4_1:78638620-78638639 None:intergenic 35.0%
AGCATTCTTCAAAATTGAGC+TGG - chr4_1:78638623-78638642 None:intergenic 35.0%
CTATAGTTCTTTCAGAAGAC+TGG - chr4_1:78638738-78638757 None:intergenic 35.0%
TCTACTAATGGCAAGTCATT+TGG - chr4_1:78638805-78638824 None:intergenic 35.0%
CTTGCCATTAGTAGATATAG+AGG + chr4_1:78638810-78638829 Msa0574890:CDS 35.0%
GATATAGAGGATAATGTTCC+AGG + chr4_1:78638823-78638842 Msa0574890:CDS 35.0%
AGCAAATCATACAAAACTCC+TGG - chr4_1:78638844-78638863 None:intergenic 35.0%
! TGGCATCGTCTTTATCTTTT+AGG - chr4_1:78638918-78638937 None:intergenic 35.0%
! CTTTCTCTGTCACACAGTTT+TGG + chr4_1:78635665-78635684 Msa0574890:five_prime_UTR 40.0%
TTTCCGGATCGTTTAAGGAA+GGG + chr4_1:78636073-78636092 Msa0574890:CDS 40.0%
TTTCCCTTCCTTAAACGATC+CGG - chr4_1:78636079-78636098 None:intergenic 40.0%
! GAGTTCATGAACTTGCTTCA+TGG + chr4_1:78636150-78636169 Msa0574890:CDS 40.0%
! CATGAACTTGCTTCATGGTT+CGG + chr4_1:78636155-78636174 Msa0574890:CDS 40.0%
CGACTTGAGAATGATGTTAG+AGG + chr4_1:78636201-78636220 Msa0574890:CDS 40.0%
! CCGTAACGGCATGATAATTT+TGG - chr4_1:78636446-78636465 None:intergenic 40.0%
ATTATCATGCCGTTACGGTT+AGG + chr4_1:78636448-78636467 Msa0574890:intron 40.0%
TCGCAAAATCCTAACCGTAA+CGG - chr4_1:78636460-78636479 None:intergenic 40.0%
!!! TCTTTTTTTTGGTAGTGGCC+GGG - chr4_1:78636863-78636882 None:intergenic 40.0%
GCTTACTGAAGAATTGTCGA+AGG + chr4_1:78637005-78637024 Msa0574890:intron 40.0%
GAAGAATTGTCGAAGGTAGA+TGG + chr4_1:78637012-78637031 Msa0574890:CDS 40.0%
GCAATCTGCAAGAAACAAGT+CGG - chr4_1:78637437-78637456 None:intergenic 40.0%
!! ATTTTGGAGATCATCCACCA+TGG - chr4_1:78637564-78637583 None:intergenic 40.0%
GAAACAGATTGAGATTTGCC+AGG + chr4_1:78637601-78637620 Msa0574890:CDS 40.0%
!! CATGGGCTGTTTTACATTCT+AGG + chr4_1:78637964-78637983 Msa0574890:intron 40.0%
!! TACTCTGTTTGCTGTTACCT+TGG - chr4_1:78638026-78638045 None:intergenic 40.0%
AAACAGAGTAGCTGTAGTAG+TGG + chr4_1:78638036-78638055 Msa0574890:CDS 40.0%
CTGTAGTAGTGGCTAATGAA+TGG + chr4_1:78638047-78638066 Msa0574890:CDS 40.0%
CATCTCTCCCTGTAAGAATA+TGG - chr4_1:78638240-78638259 None:intergenic 40.0%
GAGGGAAAATGTGTTAGCAA+TGG + chr4_1:78638487-78638506 Msa0574890:CDS 40.0%
AAACCCATTAGAGTTGGGTT+TGG - chr4_1:78638554-78638573 None:intergenic 40.0%
GTCAGAAACCCATTAGAGTT+GGG - chr4_1:78638559-78638578 None:intergenic 40.0%
AGTCAGAAACCCATTAGAGT+TGG - chr4_1:78638560-78638579 None:intergenic 40.0%
! CACAGAGGACCTTATTTGAA+AGG - chr4_1:78638596-78638615 None:intergenic 40.0%
! GCATCTAAGTCTTTTGATGG+TGG + chr4_1:78638649-78638668 Msa0574890:CDS 40.0%
!! GTATGATTTGCTGCAGAAAG+AGG + chr4_1:78638852-78638871 Msa0574890:CDS 40.0%
AGATAAAGACGATGCCATTG+AGG + chr4_1:78638921-78638940 Msa0574890:CDS 40.0%
!!! CCACTTTTTTTGCTAGCATC+TGG - chr4_1:78639039-78639058 None:intergenic 40.0%
CCAGATGCTAGCAAAAAAAG+TGG + chr4_1:78639036-78639055 Msa0574890:intron 40.0%
GGATACATTGACCAAAGCTA+TGG + chr4_1:78639057-78639076 Msa0574890:CDS 40.0%
CATTTGGATGTTCGTCTGAG+TGG + chr4_1:78635958-78635977 Msa0574890:five_prime_UTR 45.0%
! TCGTCTGAGTGGTTTCGTTT+TGG + chr4_1:78635969-78635988 Msa0574890:five_prime_UTR 45.0%
!! CGTTTTGGCATCAGTGAGAT+CGG + chr4_1:78635984-78636003 Msa0574890:five_prime_UTR 45.0%
GTTTCCGGATCGTTTAAGGA+AGG + chr4_1:78636072-78636091 Msa0574890:CDS 45.0%
GCATTCGATGAGACCTAGTT+TGG + chr4_1:78636119-78636138 Msa0574890:CDS 45.0%
GATGAGACCTAGTTTGGATG+CGG + chr4_1:78636125-78636144 Msa0574890:CDS 45.0%
AACTCATCCGCATCCAAACT+AGG - chr4_1:78636135-78636154 None:intergenic 45.0%
CGATTAAGCTCCAGTTTCAC+TGG - chr4_1:78636183-78636202 None:intergenic 45.0%
! CCAACAAATAAATCGGCTCC+CGG - chr4_1:78636668-78636687 None:intergenic 45.0%
AGATCAGATGGTTACTGGTC+CGG + chr4_1:78636828-78636847 Msa0574890:intron 45.0%
TAACGTTTGATAGAGGCTCC+AGG - chr4_1:78637081-78637100 None:intergenic 45.0%
AGCTGAAGCTACTCTTCGAA+GGG + chr4_1:78637223-78637242 Msa0574890:CDS 45.0%
GCTAGAATGGCTTCTATAGG+AGG - chr4_1:78637278-78637297 None:intergenic 45.0%
GGAGCTAGAATGGCTTCTAT+AGG - chr4_1:78637281-78637300 None:intergenic 45.0%
!! AGCCATTCTAGCTCCTTTAG+AGG + chr4_1:78637286-78637305 Msa0574890:CDS 45.0%
! AGCCTCTAAAGGAGCTAGAA+TGG - chr4_1:78637291-78637310 None:intergenic 45.0%
AGCTTGAGTTCAGCCTCTAA+AGG - chr4_1:78637302-78637321 None:intergenic 45.0%
GGACCGTCTTACGAAATCTA+AGG + chr4_1:78637484-78637503 Msa0574890:CDS 45.0%
CAGCACTTCTTGAAGCTGAA+AGG + chr4_1:78637510-78637529 Msa0574890:CDS 45.0%
TGAAGCTGAAAGGACTGTTC+AGG + chr4_1:78637520-78637539 Msa0574890:CDS 45.0%
!!! TTTTGTTTTCCTCCTGGGAG+AGG - chr4_1:78637718-78637737 None:intergenic 45.0%
GGACAGAATGCATAGACTGA+AGG + chr4_1:78637742-78637761 Msa0574890:CDS 45.0%
CAGAATGCATAGACTGAAGG+TGG + chr4_1:78637745-78637764 Msa0574890:CDS 45.0%
AAAAGCTCACCCAAACTGTC+AGG + chr4_1:78637777-78637796 Msa0574890:CDS 45.0%
AAAGCTCACCCAAACTGTCA+GGG + chr4_1:78637778-78637797 Msa0574890:CDS 45.0%
! CTCTAGTTCCCTGACAGTTT+GGG - chr4_1:78637789-78637808 None:intergenic 45.0%
CAAGAGTGAAGCAACTGGAA+AGG - chr4_1:78637910-78637929 None:intergenic 45.0%
AAAAACTCTCGATCGGGAGT+TGG + chr4_1:78637994-78638013 Msa0574890:CDS 45.0%
TATTAATCGCGGCACTTCAG+AGG + chr4_1:78638468-78638487 Msa0574890:CDS 45.0%
ATTAATCGCGGCACTTCAGA+GGG + chr4_1:78638469-78638488 Msa0574890:CDS 45.0%
TATGCTATCTGTTCCACCCA+GGG - chr4_1:78638530-78638549 None:intergenic 45.0%
ATATGCTATCTGTTCCACCC+AGG - chr4_1:78638531-78638550 None:intergenic 45.0%
! GGCGCATCTAAGTCTTTTGA+TGG + chr4_1:78638646-78638665 Msa0574890:CDS 45.0%
!!! AGTCTTTTGATGGTGGCTCT+AGG + chr4_1:78638656-78638675 Msa0574890:CDS 45.0%
TGGTTAAACGACGAACTTGG+AGG - chr4_1:78638718-78638737 None:intergenic 45.0%
! GACTGGTTAAACGACGAACT+TGG - chr4_1:78638721-78638740 None:intergenic 45.0%
AGAAAGAGGTCCTAGTGTTG+AGG + chr4_1:78638866-78638885 Msa0574890:CDS 45.0%
GACCAAAGCTATGGAAGTTG+AGG + chr4_1:78639066-78639085 Msa0574890:CDS 45.0%
TGCCTCAACTTCCATAGCTT+TGG - chr4_1:78639071-78639090 None:intergenic 45.0%
TTGAGGCAAAGAAGATGCGA+AGG + chr4_1:78639083-78639102 Msa0574890:CDS 45.0%
TGAGGCAAAGAAGATGCGAA+GGG + chr4_1:78639084-78639103 Msa0574890:CDS 45.0%
CTTCACATTGCTGAAACGCT+TGG - chr4_1:78639173-78639192 None:intergenic 45.0%
! GTTGCTGAGCACTGTTCATA+GGG - chr4_1:78639198-78639217 None:intergenic 45.0%
! TGTTGCTGAGCACTGTTCAT+AGG - chr4_1:78639199-78639218 None:intergenic 45.0%
!! CTCAGCAACAGCTTGTTACT+GGG + chr4_1:78639209-78639228 Msa0574890:CDS 45.0%
!! AGAAAATAAATAAAAAATTA+AGG - chr4_1:78636705-78636724 None:intergenic 5.0%
AAATGGGGCCCTTCTTGTAG+AGG - chr4_1:78635524-78635543 None:intergenic 50.0%
TCGGCGTAGGATAGCAAATG+GGG - chr4_1:78635539-78635558 None:intergenic 50.0%
GTCGGCGTAGGATAGCAAAT+GGG - chr4_1:78635540-78635559 None:intergenic 50.0%
GCACTCCATGCAATGTTCGT+CGG - chr4_1:78635558-78635577 None:intergenic 50.0%
! TCGGCGATGGCTGAATTTTC+CGG + chr4_1:78636003-78636022 Msa0574890:exon 50.0%
! GCTGAATTTTCCGGTGACGT+GGG + chr4_1:78636012-78636031 Msa0574890:CDS 50.0%
! ATTTTCCGGTGACGTGGGAA+TGG + chr4_1:78636017-78636036 Msa0574890:CDS 50.0%
AACGATCCGGAAACCGTCAA+CGG - chr4_1:78636066-78636085 None:intergenic 50.0%
GACGGTTTCCGGATCGTTTA+AGG + chr4_1:78636068-78636087 Msa0574890:CDS 50.0%
! TGGTTCGGATCCAGTGAAAC+TGG + chr4_1:78636170-78636189 Msa0574890:CDS 50.0%
TTTGGGCTGAATTACAGGGC+CGG + chr4_1:78636646-78636665 Msa0574890:intron 50.0%
! CCGGGAGCCGATTTATTTGT+TGG + chr4_1:78636665-78636684 Msa0574890:intron 50.0%
GATCAGATGGTTACTGGTCC+GGG + chr4_1:78636829-78636848 Msa0574890:intron 50.0%
CAGCTGAAGCTACTCTTCGA+AGG + chr4_1:78637222-78637241 Msa0574890:CDS 50.0%
! AGGCTGAACTCAAGCTTGCT+CGG + chr4_1:78637306-78637325 Msa0574890:CDS 50.0%
!! ATACCGGTTAAAGGGCACTG+AGG + chr4_1:78637386-78637405 Msa0574890:intron 50.0%
!! AAGGACTGTTCAGGTTGCCT+TGG + chr4_1:78637529-78637548 Msa0574890:CDS 50.0%
TTGGAGATCATCCACCATGG+AGG - chr4_1:78637561-78637580 None:intergenic 50.0%
! CCTCTAGTTCCCTGACAGTT+TGG - chr4_1:78637790-78637809 None:intergenic 50.0%
CCAAACTGTCAGGGAACTAG+AGG + chr4_1:78637787-78637806 Msa0574890:CDS 50.0%
AACTGTCAGGGAACTAGAGG+AGG + chr4_1:78637790-78637809 Msa0574890:CDS 50.0%
TGAAGAGCGACGATTCTTGC+AGG + chr4_1:78638111-78638130 Msa0574890:CDS 50.0%
AGGGAGAGATGCAGCAACTT+CGG + chr4_1:78638249-78638268 Msa0574890:intron 50.0%
AATTGAGCTGGAGGACACAG+AGG - chr4_1:78638611-78638630 None:intergenic 50.0%
! GTCCTAGTGTTGAGGAAAGC+TGG + chr4_1:78638874-78638893 Msa0574890:CDS 50.0%
GACCAGCTTTCCTCAACACT+AGG - chr4_1:78638879-78638898 None:intergenic 50.0%
!! GCTCAGCAACAGCTTGTTAC+TGG + chr4_1:78639208-78639227 Msa0574890:CDS 50.0%
!! AGCAACAGCTTGTTACTGGG+AGG + chr4_1:78639212-78639231 Msa0574890:CDS 50.0%
CGTCGGCGTAGGATAGCAAA+TGG - chr4_1:78635541-78635560 None:intergenic 55.0%
CATGCAATGTTCGTCGGCGT+AGG - chr4_1:78635552-78635571 None:intergenic 55.0%
CTACGCCGACGAACATTGCA+TGG + chr4_1:78635550-78635569 Msa0574890:five_prime_UTR 55.0%
! GGCTGAATTTTCCGGTGACG+TGG + chr4_1:78636011-78636030 Msa0574890:CDS 55.0%
TGACGTGGGAATGGAACCGA+CGG + chr4_1:78636026-78636045 Msa0574890:CDS 55.0%
TTGGGCTGAATTACAGGGCC+GGG + chr4_1:78636647-78636666 Msa0574890:intron 55.0%
CTGGTCCGGGATTCTAATCC+CGG + chr4_1:78636842-78636861 Msa0574890:intron 55.0%
AGTGGCCGGGATTAGAATCC+CGG - chr4_1:78636850-78636869 None:intergenic 55.0%
AAGGGTCCATGCTGCTCAGA+AGG + chr4_1:78637241-78637260 Msa0574890:CDS 55.0%
CGTCATCCTTCTGAGCAGCA+TGG - chr4_1:78637250-78637269 None:intergenic 55.0%
! ACTCAAGCTTGCTCGGCAAG+AGG + chr4_1:78637313-78637332 Msa0574890:CDS 55.0%
CAGCCTCAGTGCCCTTTAAC+CGG - chr4_1:78637392-78637411 None:intergenic 55.0%
!! TGTTCAGGTTGCCTTGGCCA+AGG + chr4_1:78637535-78637554 Msa0574890:CDS 55.0%
ATCATCCACCATGGAGGCCT+TGG - chr4_1:78637555-78637574 None:intergenic 55.0%
GTATCACCATCACCTCTCCC+AGG + chr4_1:78637703-78637722 Msa0574890:intron 55.0%
TTTCCTCCTGGGAGAGGTGA+TGG - chr4_1:78637712-78637731 None:intergenic 55.0%
GCATAGACTGAAGGTGGCAG+AGG + chr4_1:78637751-78637770 Msa0574890:CDS 55.0%
AGAGCGACGATTCTTGCAGG+TGG + chr4_1:78638114-78638133 Msa0574890:intron 55.0%
GGGAGAGATGCAGCAACTTC+GGG + chr4_1:78638250-78638269 Msa0574890:intron 55.0%
TTCCACCCAGGGATTGTCGT+CGG - chr4_1:78638519-78638538 None:intergenic 55.0%
!! TGATGGTGGCTCTAGGTCAC+TGG + chr4_1:78638663-78638682 Msa0574890:CDS 55.0%
!! GTGGCTCTAGGTCACTGGAA+AGG + chr4_1:78638668-78638687 Msa0574890:CDS 55.0%
GGCAAAGAAGATGCGAAGGG+AGG + chr4_1:78639087-78639106 Msa0574890:CDS 55.0%
GGAGGTAGCTGTCATGGAGA+AGG + chr4_1:78639105-78639124 Msa0574890:CDS 55.0%
GGTAGCTGTCATGGAGAAGG+AGG + chr4_1:78639108-78639127 Msa0574890:CDS 55.0%
AGCTGTCATGGAGAAGGAGG+TGG + chr4_1:78639111-78639130 Msa0574890:CDS 55.0%
GGCATCAGTGAGATCGGCGA+TGG + chr4_1:78635990-78636009 Msa0574890:exon 60.0%
CGGTTCCATTCCCACGTCAC+CGG - chr4_1:78636025-78636044 None:intergenic 60.0%
!! CGGTTAAAGGGCACTGAGGC+TGG + chr4_1:78637390-78637409 Msa0574890:intron 60.0%
TCACCATCACCTCTCCCAGG+AGG + chr4_1:78637706-78637725 Msa0574890:intron 60.0%
CTAGAGGAGGCTGTCCTTGC+AGG + chr4_1:78637803-78637822 Msa0574890:CDS 60.0%
CCTTCCCGACGACAATCCCT+GGG + chr4_1:78638511-78638530 Msa0574890:CDS 60.0%
TCCACCCAGGGATTGTCGTC+GGG - chr4_1:78638518-78638537 None:intergenic 60.0%
GCGAAGGGAGGTAGCTGTCA+TGG + chr4_1:78639099-78639118 Msa0574890:CDS 60.0%
CGTGGGAATGGAACCGACGG+TGG + chr4_1:78636029-78636048 Msa0574890:CDS 65.0%
CCGGAAACCGTCAACGGCAC+CGG - chr4_1:78636060-78636079 None:intergenic 65.0%
!! CCGGTGCCGTTGACGGTTTC+CGG + chr4_1:78636057-78636076 Msa0574890:CDS 65.0%
TGCCTTGGCCAAGGCCTCCA+TGG + chr4_1:78637544-78637563 Msa0574890:CDS 65.0%
CACCATGGAGGCCTTGGCCA+AGG - chr4_1:78637549-78637568 None:intergenic 65.0%
CTTGGCCAAGGCCTCCATGG+TGG + chr4_1:78637547-78637566 Msa0574890:CDS 65.0%
GAGGAGGCTGTCCTTGCAGG+CGG + chr4_1:78637806-78637825 Msa0574890:CDS 65.0%
TTGCAGCAGCACCGCCTGCA+AGG - chr4_1:78637820-78637839 None:intergenic 65.0%
!! TCGGGAGTTGGCTCGTGCCA+AGG + chr4_1:78638006-78638025 Msa0574890:CDS 65.0%
GCCTTCCCGACGACAATCCC+TGG + chr4_1:78638510-78638529 Msa0574890:CDS 65.0%
CCCAGGGATTGTCGTCGGGA+AGG - chr4_1:78638514-78638533 None:intergenic 65.0%
TCCCGACGACAATCCCTGGG+TGG + chr4_1:78638514-78638533 Msa0574890:CDS 65.0%
! GGAACCGACGGTGGTGACGC+CGG + chr4_1:78636038-78636057 Msa0574890:CDS 70.0%
!! GGTGACGCCGGTGCCGTTGA+CGG + chr4_1:78636050-78636069 Msa0574890:CDS 70.0%
GGAGGTGGCTGCAATGCGCG+TGG + chr4_1:78639126-78639145 Msa0574890:CDS 70.0%
!! GGCACCGGCGTCACCACCGT+CGG - chr4_1:78636045-78636064 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 78635520 78639438 78635520 ID=Msa0574890;Name=Msa0574890
chr4_1 mRNA 78635520 78639438 78635520 ID=Msa0574890-mRNA-1;Parent=Msa0574890;Name=Msa0574890-mRNA-1;_AED=0.15;_eAED=0.15;_QI=489|1|1|1|1|1|10|129|628
chr4_1 exon 78635520 78636222 78635520 ID=Msa0574890-mRNA-1:exon:27903;Parent=Msa0574890-mRNA-1
chr4_1 exon 78636309 78636394 78636309 ID=Msa0574890-mRNA-1:exon:27904;Parent=Msa0574890-mRNA-1
chr4_1 exon 78637006 78637071 78637006 ID=Msa0574890-mRNA-1:exon:27905;Parent=Msa0574890-mRNA-1
chr4_1 exon 78637164 78637334 78637164 ID=Msa0574890-mRNA-1:exon:27906;Parent=Msa0574890-mRNA-1
chr4_1 exon 78637452 78637622 78637452 ID=Msa0574890-mRNA-1:exon:27907;Parent=Msa0574890-mRNA-1
chr4_1 exon 78637725 78637880 78637725 ID=Msa0574890-mRNA-1:exon:27908;Parent=Msa0574890-mRNA-1
chr4_1 exon 78637986 78638132 78637986 ID=Msa0574890-mRNA-1:exon:27909;Parent=Msa0574890-mRNA-1
chr4_1 exon 78638251 78638322 78638251 ID=Msa0574890-mRNA-1:exon:27910;Parent=Msa0574890-mRNA-1
chr4_1 exon 78638409 78638942 78638409 ID=Msa0574890-mRNA-1:exon:27911;Parent=Msa0574890-mRNA-1
chr4_1 exon 78639040 78639438 78639040 ID=Msa0574890-mRNA-1:exon:27912;Parent=Msa0574890-mRNA-1
chr4_1 five_prime_UTR 78635520 78636008 78635520 ID=Msa0574890-mRNA-1:five_prime_utr;Parent=Msa0574890-mRNA-1
chr4_1 CDS 78636009 78636222 78636009 ID=Msa0574890-mRNA-1:cds;Parent=Msa0574890-mRNA-1
chr4_1 CDS 78636309 78636394 78636309 ID=Msa0574890-mRNA-1:cds;Parent=Msa0574890-mRNA-1
chr4_1 CDS 78637006 78637071 78637006 ID=Msa0574890-mRNA-1:cds;Parent=Msa0574890-mRNA-1
chr4_1 CDS 78637164 78637334 78637164 ID=Msa0574890-mRNA-1:cds;Parent=Msa0574890-mRNA-1
chr4_1 CDS 78637452 78637622 78637452 ID=Msa0574890-mRNA-1:cds;Parent=Msa0574890-mRNA-1
chr4_1 CDS 78637725 78637880 78637725 ID=Msa0574890-mRNA-1:cds;Parent=Msa0574890-mRNA-1
chr4_1 CDS 78637986 78638132 78637986 ID=Msa0574890-mRNA-1:cds;Parent=Msa0574890-mRNA-1
chr4_1 CDS 78638251 78638322 78638251 ID=Msa0574890-mRNA-1:cds;Parent=Msa0574890-mRNA-1
chr4_1 CDS 78638409 78638942 78638409 ID=Msa0574890-mRNA-1:cds;Parent=Msa0574890-mRNA-1
chr4_1 CDS 78639040 78639309 78639040 ID=Msa0574890-mRNA-1:cds;Parent=Msa0574890-mRNA-1
chr4_1 three_prime_UTR 78639310 78639438 78639310 ID=Msa0574890-mRNA-1:three_prime_utr;Parent=Msa0574890-mRNA-1
Gene Sequence

>Msa0574890

ATGGCTGAATTTTCCGGTGACGTGGGAATGGAACCGACGGTGGTGACGCCGGTGCCGTTGACGGTTTCCGGATCGTTTAAGGAAGGGAAAAACTCATCACGAAGACGTACGCATTCGATGAGACCTAGTTTGGATGCGGATGAGTTCATGAACTTGCTTCATGGTTCGGATCCAGTGAAACTGGAGCTTAATCGACTTGAGAATGATGTTAGAGATAAGGATAGAGAATTATCAGAAGCACAAGCAGAGATCAAAGCGTTGAAACACTCTGAAAGACTTAGAGAAAAAGCTGTTGAAGAGCTTACTGAAGAATTGTCGAAGGTAGATGGAAAGCTGAAGTTTACAGAAAATCTTCTAGAAAGCAAAAATCTCGAAATAAAGAAAATCAATGATGAAAAGAAAGCATCGATGGCAGCTCAGTTTGCAGCTGAAGCTACTCTTCGAAGGGTCCATGCTGCTCAGAAGGATGACGACATGCCTCCTATAGAAGCCATTCTAGCTCCTTTAGAGGCTGAACTCAAGCTTGCTCGGCAAGAGATTGCTAAACTTCAAGATGATAACAGAGCTTTGGACCGTCTTACGAAATCTAAGGAAGCAGCACTTCTTGAAGCTGAAAGGACTGTTCAGGTTGCCTTGGCCAAGGCCTCCATGGTGGATGATCTCCAAAATAAAAATCAGGAGCTAATGAAACAGATTGAGATTTGCCAGGAGGAAAACAAAATTTTGGACAGAATGCATAGACTGAAGGTGGCAGAGGTTGAAAAGCTCACCCAAACTGTCAGGGAACTAGAGGAGGCTGTCCTTGCAGGCGGTGCTGCTGCAAATGCTGTGAGAGATTATCAGCGAAAATTTCAAGAAATGAATGAAGAAAGAAAAACTCTCGATCGGGAGTTGGCTCGTGCCAAGGTAACAGCAAACAGAGTAGCTGTAGTAGTGGCTAATGAATGGAAAGATGCTAATGACAAAGTGATGCCTGTAAAACAATGGCTTGAAGAGCGACGATTCTTGCAGGGAGAGATGCAGCAACTTCGGGATAAGCTTGCTATATCTGATCGCACTGCAAAGTATGAAGCACAGTTAAAAGAAAAATATCAATTACGGCTTAAAGTGCTACAAGAGAGTTTGAGAGAAACTTCTAACAGTATTAATCGCGGCACTTCAGAGGGAAAATGTGTTAGCAATGGGCCTTCCCGACGACAATCCCTGGGTGGAACAGATAGCATATCCAAACCCAACTCTAATGGGTTTCTGACTAAGAGAACATCATCCTTTCAAATAAGGTCCTCTGTGTCCTCCAGCTCAATTTTGAAGAATGCTAAAGGCGCATCTAAGTCTTTTGATGGTGGCTCTAGGTCACTGGAAAGGAGTAAAATTCTTCTAAATGGAAAGCCTCCAAGTTCGTCGTTTAACCAGTCTTCTGAAAGAACTATAGACAAAGAGGAAAACAATAATTGGAAAGGAAGTTTGGATGATAAGCCAAATGACTTGCCATTAGTAGATATAGAGGATAATGTTCCAGGAGTTTTGTATGATTTGCTGCAGAAAGAGGTCCTAGTGTTGAGGAAAGCTGGTCATGAAAAAGATCAAAGCCTAAAAGATAAAGACGATGCCATTGAGATGCTAGCAAAAAAAGTGGATACATTGACCAAAGCTATGGAAGTTGAGGCAAAGAAGATGCGAAGGGAGGTAGCTGTCATGGAGAAGGAGGTGGCTGCAATGCGCGTGGACAAAGAACAAGAGACAAAAGCCAAGCGTTTCAGCAATGTGAAGAGCCCTATGAACAGTGCTCAGCAACAGCTTGTTACTGGGAGGTACTTCTTTTTCTCTTTTTGGTCACATTGCTGTGCTTTTTATTCAATGAAGTACTATAGCTTGCTTTTTTTCTGA
Protein sequence

>Msa0574890

MAEFSGDVGMEPTVVTPVPLTVSGSFKEGKNSSRRRTHSMRPSLDADEFMNLLHGSDPVKLELNRLENDVRDKDRELSEAQAEIKALKHSERLREKAVEELTEELSKVDGKLKFTENLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNRALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDRMHRLKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKFQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDKLAISDRTAKYEAQLKEKYQLRLKVLQESLRETSNSINRGTSEGKCVSNGPSRRQSLGGTDSISKPNSNGFLTKRTSSFQIRSSVSSSSILKNAKGASKSFDGGSRSLERSKILLNGKPPSSSFNQSSERTIDKEENNNWKGSLDDKPNDLPLVDIEDNVPGVLYDLLQKEVLVLRKAGHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAVMEKEVAAMRVDKEQETKAKRFSNVKSPMNSAQQQLVTGRYFFFSFWSHCCAFYSMKYYSLLFF*