AlfalfaGEDB | Msa0280290

M. sativa cultivar zhongmu-4 / Msa0280290

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0280290	XP_003594670.1	96.024	327	13	0	1	327	1	327	0.0	525

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0280290	sp\|Q2QZJ8\|JAMYB_ORYSJ	77.576	165	35	1	23	185	28	192	5.43e-90	273

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0280290	G7IL36	96.024	327	13	0	1	327	1	327	0.0	525

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TFs/TRs:

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Gene ID	Type	Classification
Msa0280290	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0199470	Msa0280290	0.940657	1.602769e-100	-8.615850e-47
Msa0230210	Msa0280290	0.985503	9.037191e-164	-8.615850e-47
Msa0280290	Msa0319390	0.963824	1.464713e-122	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0280290	MtrunA17_Chr2g0293911	96.024	327	13	0	1	327	1	327	0.0	525
Msa0280290	MtrunA17_Chr4g0068921	85.987	157	22	0	1	157	1	157	4.15e-89	265
Msa0280290	MtrunA17_Chr1g0194301	69.032	155	48	0	11	165	20	174	3.07e-82	250
Msa0280290	MtrunA17_Chr1g0194291	68.047	169	47	2	18	186	15	176	4.92e-81	247
Msa0280290	MtrunA17_Chr1g0209661	62.428	173	65	0	18	190	21	193	2.73e-78	241
Msa0280290	MtrunA17_Chr7g0228231	82.301	113	20	0	18	130	8	120	1.78e-67	210
Msa0280290	MtrunA17_Chr6g0450101	78.947	114	24	0	18	131	8	121	9.11e-66	206
Msa0280290	MtrunA17_Chr1g0168661	70.476	105	31	0	25	129	22	126	9.36e-51	169
Msa0280290	MtrunA17_Chr1g0186061	59.200	125	48	1	5	129	4	125	2.41e-49	165
Msa0280290	MtrunA17_Chr5g0410961	56.693	127	53	1	20	146	8	132	7.40e-46	159

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0280290	AT5G49620.1	54.462	325	82	12	19	324	21	298	1.60e-88	268
Msa0280290	AT1G48000.1	74.675	154	35	1	22	175	30	179	6.53e-85	256
Msa0280290	AT3G06490.1	50.148	337	111	11	1	316	1	301	9.62e-85	259
Msa0280290	AT5G49620.2	52.212	339	82	13	19	324	21	312	1.21e-84	258
Msa0280290	AT2G47190.1	74.648	142	36	0	19	160	15	156	1.31e-78	241
Msa0280290	AT1G68320.1	71.329	143	41	0	23	165	18	160	1.23e-74	231
Msa0280290	AT1G25340.1	63.576	151	55	0	25	175	19	169	1.08e-69	219
Msa0280290	AT3G27810.1	80.000	110	22	0	21	130	17	126	3.25e-65	205
Msa0280290	AT1G25340.2	60.927	151	54	1	25	175	19	164	2.49e-64	205
Msa0280290	AT1G25340.3	60.927	151	54	1	25	175	19	164	7.55e-64	204

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Find 96 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGCACAATACTTACC+GGG	0.631573	2_3:+14811065	Msa0280290:CDS
AAACACTCCTTGGATTCAAG+GGG	0.650871	2_3:+14811658	Msa0280290:CDS
AACAAAATTTCAATATTTCA+TGG	0.398110	2_3:+14809870	Msa0280290:exon
AACACTCTTGCTCGTTCAGC+TGG	0.485635	2_3:+14810036	Msa0280290:CDS
AACATATACATATCCAAAGT+AGG	0.471344	2_3:+14809844	Msa0280290:five_prime_UTR
AAGATGCCATGCGCTACCTT+TGG	0.397038	2_3:+14811180	Msa0280290:CDS
AATATAATAAATTCATATGT+AGG	0.450845	2_3:+14811817	Msa0280290:three_prime_UTR
ACAACGAGATCAAGAATTAT+TGG	0.314777	2_3:+14811096	Msa0280290:CDS
ACATATACATATCCAAAGTA+GGG	0.573104	2_3:+14809845	Msa0280290:five_prime_UTR
ACATGTGAAAGTAAGGAAAG+AGG	0.547213	2_3:+14811738	Msa0280290:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGAAAAAGAAAGAGAGATT+AGG	-	chr2_3:14809715-14809734	None:intergenic	30.0%
TTCATGATTGCAATTGTTGA+TGG	+	chr2_3:14810154-14810173	Msa0280290:intron	30.0%
AAGAAAAAAACCGCAAACTT+TGG	-	chr2_3:14810312-14810331	None:intergenic	30.0%
TTAGCCAGGACTTTAATATA+AGG	+	chr2_3:14810361-14810380	Msa0280290:intron	30.0%
TATGCCTTATATTAAAGTCC+TGG	-	chr2_3:14810368-14810387	None:intergenic	30.0%
CAAAATTGCACAATACTTAC+CGG	+	chr2_3:14811064-14811083	Msa0280290:CDS	30.0%
AAAATTGCACAATACTTACC+GGG	+	chr2_3:14811065-14811084	Msa0280290:CDS	30.0%
ACAACGAGATCAAGAATTAT+TGG	+	chr2_3:14811096-14811115	Msa0280290:CDS	30.0%
GATTATTACAATGTCCAAGT+TGG	+	chr2_3:14811512-14811531	Msa0280290:CDS	30.0%
GAGAAAAAGAAAGAGAGATT+AGG	-	chr2_3:14809715-14809734	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	14809692	14811838	14809692	ID=Msa0280290;Name=Msa0280290
chr2_3	mRNA	14809692	14811838	14809692	ID=Msa0280290-mRNA-1;Parent=Msa0280290;Name=Msa0280290-mRNA-1;_AED=0.02;_eAED=0.02;_QI=197\|1\|1\|1\|1\|1\|3\|93\|328
chr2_3	exon	14809692	14810057	14809692	ID=Msa0280290-mRNA-1:exon:6255;Parent=Msa0280290-mRNA-1
chr2_3	exon	14810655	14810784	14810655	ID=Msa0280290-mRNA-1:exon:6256;Parent=Msa0280290-mRNA-1
chr2_3	exon	14811058	14811838	14811058	ID=Msa0280290-mRNA-1:exon:6257;Parent=Msa0280290-mRNA-1
chr2_3	five_prime_UTR	14809692	14809888	14809692	ID=Msa0280290-mRNA-1:five_prime_utr;Parent=Msa0280290-mRNA-1
chr2_3	CDS	14809889	14810057	14809889	ID=Msa0280290-mRNA-1:cds;Parent=Msa0280290-mRNA-1
chr2_3	CDS	14810655	14810784	14810655	ID=Msa0280290-mRNA-1:cds;Parent=Msa0280290-mRNA-1
chr2_3	CDS	14811058	14811745	14811058	ID=Msa0280290-mRNA-1:cds;Parent=Msa0280290-mRNA-1
chr2_3	three_prime_UTR	14811746	14811838	14811746	ID=Msa0280290-mRNA-1:three_prime_utr;Parent=Msa0280290-mRNA-1

Gene Sequence

>Msa0280290

ATGGAAGTGGAAGGAAGTGTAATAAGCAACTCGAACATCACCATGCTCCAAAGTGATGATGAGTTGGATCTTCGAAGAGGACCATGGACCGTCGATGAAGATCTTGCTCTCATCAATTACATTGCAAATCATGGTGAAGGTCGATGGAACACTCTTGCTCGTTCAGCTGGACTCAAACGAACTGGCAAGAGCTGTAGATTGAGATGGTTGAATTATCTTCGTCCAGATGTTCGTCGTGGTAACATCACACTTGAAGAACAACTTCTTATTCTTGAACTTCATAGTCGTTGGGGAAACCGATGGTCCAAAATTGCACAATACTTACCGGGAAGAACAGACAACGAGATCAAGAATTATTGGAGAACCCGTGTCCAAAAACATGCCAAACAACTCAAATGTGACGTAAACAGTAAGCAATTCAAAGATGCCATGCGCTACCTTTGGATGCCAAGGTTAGTGGAGCGCATCCAAGCTGCCGCATCCACCTCCGCCACCCGAGCCACCGCCACTAATAATGGTTCACCAAGTGGTACAACAGCGGTCACCACCAACAATACGACATATAACATAAACAACAATTTTGATGTTCATAGTAGCGCGGACATGTTAACCCCAACAATTATGAACACCAACAGTTTATGTGGTTCACATGTTACACAACGTTATACTCCAGAGAATAGTAGCAATGGCGCCGCGGCTGCATCATCGGATTCATTTGGGACACAAGTTTCGCCTGTCTCGGAATTGACTCAAGATTATTACAATGTCCAAGTTGGTAGTAACAACAATAATAACCCTAATTCTGATTATTACCAACAAGCTCAGCAATTTGGGTTTTTTGATTGCATCACTAGCCCATCTGGATTGTTCCCTCAAATGGATTTCAGTTCCATGGAACCAAACACTCCTTGGATTCAAGGGGACACATCTGACAATTTCTGGAATGTTGAAAACATGTTACTCTTTCAACATCTCAATGACATGTGA

Protein sequence

>Msa0280290

MEVEGSVISNSNITMLQSDDELDLRRGPWTVDEDLALINYIANHGEGRWNTLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAASTSATRATATNNGSPSGTTAVTTNNTTYNINNNFDVHSSADMLTPTIMNTNSLCGSHVTQRYTPENSSNGAAAASSDSFGTQVSPVSELTQDYYNVQVGSNNNNNPNSDYYQQAQQFGFFDCITSPSGLFPQMDFSSMEPNTPWIQGDTSDNFWNVENMLLFQHLNDM*