AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0319390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0319390 MtrunA17_Chr2g0293911 96.024 327 13 0 1 327 1 327 0.0 525
Msa0319390 MtrunA17_Chr4g0068921 85.987 157 22 0 1 157 1 157 3.97e-89 265
Msa0319390 MtrunA17_Chr1g0194301 69.032 155 48 0 11 165 20 174 3.46e-82 250
Msa0319390 MtrunA17_Chr1g0194291 68.047 169 47 2 18 186 15 176 5.99e-81 246
Msa0319390 MtrunA17_Chr1g0209661 62.428 173 65 0 18 190 21 193 2.95e-78 241
Msa0319390 MtrunA17_Chr7g0228231 82.301 113 20 0 18 130 8 120 2.17e-67 210
Msa0319390 MtrunA17_Chr6g0450101 78.947 114 24 0 18 131 8 121 9.11e-66 206
Msa0319390 MtrunA17_Chr1g0168661 70.476 105 31 0 25 129 22 126 9.06e-51 169
Msa0319390 MtrunA17_Chr1g0186061 59.200 125 48 1 5 129 4 125 2.83e-49 165
Msa0319390 MtrunA17_Chr5g0410961 56.693 127 53 1 20 146 8 132 7.17e-46 159
Msa0319390 MtrunA17_Chr8g0346561 59.664 119 46 1 21 137 9 127 3.00e-44 153
Msa0319390 MtrunA17_Chr2g0327821 57.273 110 47 0 23 132 5 114 5.41e-44 150
Msa0319390 MtrunA17_Chr2g0323411 61.682 107 41 0 20 126 8 114 9.93e-44 152
Msa0319390 MtrunA17_Chr2g0281071 58.559 111 46 0 24 134 13 123 1.05e-43 153
Msa0319390 MtrunA17_Chr4g0048511 58.559 111 46 0 24 134 13 123 2.58e-43 152
Msa0319390 MtrunA17_Chr4g0070611 62.385 109 41 0 24 132 12 120 2.70e-43 151
Msa0319390 MtrunA17_Chr7g0275911 63.303 109 40 0 21 129 9 117 2.99e-43 149
Msa0319390 MtrunA17_Chr7g0228891 53.488 129 59 1 20 147 8 136 6.41e-43 149
Msa0319390 MtrunA17_Chr3g0115821 55.000 120 54 0 20 139 8 127 7.60e-43 151
Msa0319390 MtrunA17_Chr5g0395281 55.556 117 52 0 18 134 6 122 8.01e-43 150
Msa0319390 MtrunA17_Chr4g0070641 62.385 109 41 0 24 132 12 120 1.04e-42 145
Msa0319390 MtrunA17_Chr4g0039971 56.522 115 50 0 20 134 9 123 1.10e-42 150
Msa0319390 MtrunA17_Chr3g0121241 63.208 106 39 0 21 126 39 144 1.95e-42 149
Msa0319390 MtrunA17_Chr1g0180391 58.879 107 44 0 23 129 18 124 3.42e-42 146
Msa0319390 MtrunA17_Chr1g0187761 54.622 119 54 0 20 138 8 126 3.63e-42 147
Msa0319390 MtrunA17_Chr1g0203411 58.879 107 44 0 24 130 12 118 5.75e-42 147
Msa0319390 MtrunA17_Chr3g0099131 54.630 108 49 0 23 130 40 147 8.35e-42 152
Msa0319390 MtrunA17_Chr4g0030881 55.652 115 44 1 25 132 8 122 8.77e-42 145
Msa0319390 MtrunA17_Chr4g0068061 39.791 191 92 2 20 210 8 175 1.36e-41 147
Msa0319390 MtrunA17_Chr6g0453471 52.381 126 59 1 20 144 8 133 2.15e-41 147
Msa0319390 MtrunA17_Chr8g0385321 62.376 101 38 0 26 126 14 114 2.77e-41 146
Msa0319390 MtrunA17_Chr8g0354661 47.407 135 64 1 2 129 8 142 3.87e-41 150
Msa0319390 MtrunA17_Chr7g0217741 53.043 115 54 0 20 134 8 122 4.62e-41 145
Msa0319390 MtrunA17_Chr1g0151941 57.407 108 45 1 20 126 8 115 6.33e-41 143
Msa0319390 MtrunA17_Chr1g0193371 54.310 116 53 0 24 139 12 127 7.41e-41 146
Msa0319390 MtrunA17_Chr4g0057031 53.913 115 53 0 20 134 8 122 8.42e-41 143
Msa0319390 MtrunA17_Chr3g0110351 50.794 126 61 1 20 144 8 133 9.31e-41 144
Msa0319390 MtrunA17_Chr4g0037141 50.649 154 66 2 26 170 14 166 9.55e-41 144
Msa0319390 MtrunA17_Chr2g0328771 56.481 108 47 0 24 131 20 127 9.69e-41 144
Msa0319390 MtrunA17_Chr3g0131121 63.366 101 37 0 26 126 14 114 1.34e-40 144
Msa0319390 MtrunA17_Chr2g0330041 56.311 103 45 0 24 126 12 114 1.60e-40 146
Msa0319390 MtrunA17_Chr1g0167691 58.252 103 43 0 24 126 12 114 1.78e-40 142
Msa0319390 MtrunA17_Chr7g0274581 52.252 111 53 0 20 130 8 118 2.22e-40 140
Msa0319390 MtrunA17_Chr4g0032401 56.481 108 47 0 24 131 17 124 2.27e-40 144
Msa0319390 MtrunA17_Chr5g0434571 53.043 115 54 0 20 134 44 158 2.42e-40 144
Msa0319390 MtrunA17_Chr3g0080861 54.717 106 48 0 24 129 37 142 3.92e-40 147
Msa0319390 MtrunA17_Chr4g0042671 51.639 122 59 0 20 141 8 129 5.19e-40 145
Msa0319390 MtrunA17_Chr4g0044421 55.085 118 53 0 19 136 7 124 6.21e-40 139
Msa0319390 MtrunA17_Chr8g0349261 56.881 109 46 1 19 126 8 116 6.51e-40 142
Msa0319390 MtrunA17_Chr7g0261281 55.856 111 49 0 20 130 8 118 9.32e-40 141
Msa0319390 MtrunA17_Chr8g0387421 57.009 107 46 0 24 130 12 118 9.52e-40 142
Msa0319390 MtrunA17_Chr7g0270891 55.856 111 49 0 24 134 12 122 9.91e-40 143
Msa0319390 MtrunA17_Chr5g0435101 49.587 121 61 0 20 140 7 127 1.01e-39 139
Msa0319390 MtrunA17_Chr1g0167661 57.282 103 44 0 24 126 12 114 2.11e-39 139
Msa0319390 MtrunA17_Chr2g0311221 57.692 104 44 0 20 123 10 113 2.21e-39 141
Msa0319390 MtrunA17_Chr1g0154031 54.717 106 48 0 24 129 76 181 2.47e-39 143
Msa0319390 MtrunA17_Chr4g0022901 55.455 110 49 0 19 128 8 117 3.41e-39 139
Msa0319390 MtrunA17_Chr7g0217221 40.000 180 97 4 20 189 8 186 5.95e-39 139
Msa0319390 MtrunA17_Chr4g0022931 54.464 112 51 0 19 130 8 119 6.17e-39 139
Msa0319390 MtrunA17_Chr1g0203441 52.101 119 57 0 25 143 14 132 7.07e-39 138
Msa0319390 MtrunA17_Chr5g0397231 61.856 97 37 0 24 120 12 108 8.35e-39 140
Msa0319390 MtrunA17_Chr8g0342541 54.369 103 47 0 24 126 12 114 1.03e-38 140
Msa0319390 MtrunA17_Chr4g0022881 56.190 105 46 0 25 129 13 117 1.04e-38 137
Msa0319390 MtrunA17_Chr4g0022911 56.190 105 46 0 24 128 13 117 1.88e-38 138
Msa0319390 MtrunA17_Chr1g0193801 54.054 111 51 0 24 134 12 122 1.93e-38 140
Msa0319390 MtrunA17_Chr2g0309911 53.398 103 48 0 24 126 11 113 2.29e-38 138
Msa0319390 MtrunA17_Chr4g0055981 56.881 109 47 0 24 132 55 163 3.09e-38 135
Msa0319390 MtrunA17_Chr2g0323351 56.075 107 47 0 20 126 8 114 5.23e-38 135
Msa0319390 MtrunA17_Chr3g0088461 55.660 106 47 0 24 129 22 127 5.78e-38 138
Msa0319390 MtrunA17_Chr8g0342521 54.369 103 47 0 24 126 12 114 6.03e-38 138
Msa0319390 MtrunA17_Chr7g0271241 55.172 116 52 0 24 139 12 127 7.48e-38 138
Msa0319390 MtrunA17_Chr8g0343831 54.464 112 49 1 15 126 1 110 1.14e-37 135
Msa0319390 MtrunA17_Chr3g0092401 49.107 112 57 0 20 131 9 120 1.22e-37 136
Msa0319390 MtrunA17_Chr6g0452271 50.435 115 57 0 20 134 8 122 1.61e-37 136
Msa0319390 MtrunA17_Chr4g0060721 51.402 107 52 0 20 126 9 115 5.02e-37 135
Msa0319390 MtrunA17_Chr1g0211161 55.340 103 46 0 24 126 13 115 5.11e-37 132
Msa0319390 MtrunA17_Chr7g0254411 51.402 107 52 0 20 126 8 114 5.23e-37 135
Msa0319390 MtrunA17_Chr1g0194951 57.282 103 44 0 24 126 12 114 6.00e-37 136
Msa0319390 MtrunA17_Chr4g0022891 47.656 128 60 1 20 147 8 128 1.05e-36 132
Msa0319390 MtrunA17_Chr3g0117091 55.340 103 46 0 24 126 12 114 1.28e-36 134
Msa0319390 MtrunA17_Chr4g0058631 54.369 103 47 0 24 126 12 114 2.53e-36 134
Msa0319390 MtrunA17_Chr6g0453211 53.398 103 48 0 20 122 8 110 4.37e-36 132
Msa0319390 MtrunA17_Chr3g0103281 49.593 123 61 1 23 144 11 133 4.53e-36 132
Msa0319390 MtrunA17_Chr4g0028311 54.630 108 48 1 20 126 8 115 6.87e-36 132
Msa0319390 MtrunA17_Chr6g0470971 54.902 102 46 0 25 126 15 116 9.49e-36 130
Msa0319390 MtrunA17_Chr5g0417821 50.442 113 56 0 22 134 5 117 2.20e-35 130
Msa0319390 MtrunA17_Chr1g0192411 48.361 122 58 1 8 129 1 117 3.32e-35 132
Msa0319390 MtrunA17_Chr8g0342481 52.885 104 48 1 24 126 12 115 3.71e-35 132
Msa0319390 MtrunA17_Chr2g0322521 46.774 124 62 1 10 129 11 134 5.62e-35 131
Msa0319390 MtrunA17_Chr3g0135311 54.630 108 48 1 20 126 8 115 8.14e-35 129
Msa0319390 MtrunA17_Chr1g0152011 53.704 108 49 1 20 126 8 115 1.98e-34 128
Msa0319390 MtrunA17_Chr2g0327351 53.846 104 47 1 20 122 8 111 3.07e-34 127
Msa0319390 MtrunA17_Chr5g0400821 37.209 215 122 6 20 222 8 221 3.77e-34 127
Msa0319390 MtrunA17_Chr8g0334881 44.068 118 65 1 15 131 1 118 4.80e-34 127
Msa0319390 MtrunA17_Chr7g0240821 36.316 190 111 3 29 215 6 188 1.68e-33 123
Msa0319390 MtrunA17_Chr7g0269831 53.211 109 51 0 20 128 8 116 2.99e-33 125
Msa0319390 MtrunA17_Chr7g0264641 50.000 108 53 1 20 126 8 115 3.85e-33 123
Msa0319390 MtrunA17_Chr4g0054391 54.902 102 45 1 20 120 8 109 1.23e-32 122
Msa0319390 MtrunA17_Chr4g0072751 53.846 104 47 1 20 122 8 111 1.22e-31 121
Msa0319390 MtrunA17_Chr5g0440781 46.296 108 57 1 23 129 11 118 2.50e-31 116
Msa0319390 MtrunA17_Chr5g0440761 46.296 108 57 1 23 129 11 118 6.24e-31 117
Msa0319390 MtrunA17_Chr5g0441141 46.296 108 57 1 23 129 11 118 6.86e-31 117
Msa0319390 MtrunA17_Chr3g0099141 49.438 89 45 0 20 108 36 124 7.32e-31 113
Msa0319390 MtrunA17_Chr5g0441131 42.609 115 65 1 16 129 1 115 1.57e-30 114
Msa0319390 MtrunA17_Chr5g0434931 50.485 103 51 0 24 126 35 137 2.83e-30 116
Msa0319390 MtrunA17_Chr6g0487491 49.138 116 50 2 20 126 8 123 2.83e-30 115
Msa0319390 MtrunA17_Chr8g0360111 53.465 101 47 0 24 124 25 125 4.38e-30 115
Msa0319390 MtrunA17_Chr5g0434831 51.456 103 50 0 24 126 7 109 6.28e-30 112
Msa0319390 MtrunA17_Chr5g0434911 50.485 103 51 0 24 126 21 123 1.19e-29 114
Msa0319390 MtrunA17_Chr7g0247131 60.759 79 31 0 56 134 10 88 2.82e-29 113
Msa0319390 MtrunA17_Chr4g0013361 42.056 107 61 1 24 129 10 116 3.26e-29 113
Msa0319390 MtrunA17_Chr7g0228991 48.649 111 57 0 16 126 21 131 3.31e-29 113
Msa0319390 MtrunA17_Chr7g0220341 46.087 115 60 1 16 128 17 131 4.80e-29 112
Msa0319390 MtrunA17_Chr5g0434841 50.485 103 51 0 24 126 20 122 1.17e-28 112
Msa0319390 MtrunA17_Chr5g0401731 33.880 183 106 3 21 200 10 180 7.22e-28 110
Msa0319390 MtrunA17_Chr4g0042611 53.086 81 38 0 20 100 8 88 8.62e-28 103
Msa0319390 MtrunA17_Chr6g0454921 45.794 107 57 1 14 120 3 108 3.33e-27 106
Msa0319390 MtrunA17_Chr7g0238631 44.231 104 57 1 23 126 110 212 2.78e-26 108
Msa0319390 MtrunA17_Chr5g0395221 53.012 83 39 0 18 100 6 88 3.32e-26 99.8
Msa0319390 MtrunA17_Chr4g0068911 57.658 111 40 4 218 324 1 108 4.86e-26 100
Msa0319390 MtrunA17_Chr2g0323321 55.556 81 36 0 24 104 11 91 7.74e-26 99.8
Msa0319390 MtrunA17_Chr3g0139671 33.974 156 96 2 23 178 82 230 2.49e-25 106
Msa0319390 MtrunA17_Chr2g0294811 53.086 81 38 0 20 100 8 88 3.78e-25 97.8
Msa0319390 MtrunA17_Chr8g0342511 55.263 76 34 0 24 99 12 87 4.83e-25 97.1
Msa0319390 MtrunA17_Chr5g0429661 30.601 183 124 2 9 189 103 284 7.23e-25 103
Msa0319390 MtrunA17_Chr8g0342531 51.899 79 38 0 23 101 11 89 1.16e-24 98.2
Msa0319390 MtrunA17_Chr3g0133601 41.284 109 63 1 20 128 31 138 3.96e-24 98.2
Msa0319390 MtrunA17_Chr4g0008551 43.689 103 57 1 26 128 38 139 4.04e-24 100
Msa0319390 MtrunA17_Chr8g0342461 53.247 77 35 1 26 101 14 90 6.93e-24 95.1
Msa0319390 MtrunA17_Chr6g0460661 38.739 111 67 1 29 139 19 128 1.02e-23 95.5
Msa0319390 MtrunA17_Chr1g0157731 40.385 104 61 1 23 126 88 190 1.22e-23 102
Msa0319390 MtrunA17_Chr8g0342471 53.247 77 35 1 26 101 14 90 1.85e-23 94.0
Msa0319390 MtrunA17_Chr3g0117511 37.838 111 67 2 21 130 178 287 9.84e-23 98.2
Msa0319390 MtrunA17_Chr4g0053431 40.187 107 63 1 22 128 1 106 1.14e-22 95.5
Msa0319390 MtrunA17_Chr4g0058991 33.083 133 88 1 1 133 184 315 3.16e-22 96.7
Msa0319390 MtrunA17_Chr5g0425591 41.304 92 53 1 16 106 1 92 1.17e-21 87.8
Msa0319390 MtrunA17_Chr7g0228531 37.008 127 78 2 21 147 215 339 2.15e-21 94.4
Msa0319390 MtrunA17_Chr5g0397841 43.878 98 54 1 23 120 107 203 6.99e-21 92.8
Msa0319390 MtrunA17_Chr6g0480581 44.211 95 52 1 26 120 4 97 1.22e-20 89.4
Msa0319390 MtrunA17_Chr5g0417621 40.000 105 62 1 26 130 134 237 3.21e-20 90.9
Msa0319390 MtrunA17_Chr7g0254261 29.834 181 111 4 26 206 89 253 3.68e-20 89.7
Msa0319390 MtrunA17_Chr6g0460671 36.842 114 71 1 26 139 99 211 4.37e-20 89.7
Msa0319390 MtrunA17_Chr6g0453751 42.857 91 43 2 24 105 20 110 5.12e-20 84.7
Msa0319390 MtrunA17_Chr4g0042501 39.048 105 63 1 26 130 105 208 8.36e-20 89.4
Msa0319390 MtrunA17_Chr7g0229101 57.971 69 29 0 57 125 5 73 9.65e-20 85.9
Msa0319390 MtrunA17_Chr5g0437321 41.071 112 61 2 9 120 6 112 1.08e-19 87.4
Msa0319390 MtrunA17_Chr7g0238651 36.283 113 70 1 26 136 7 119 1.16e-19 88.6
Msa0319390 MtrunA17_Chr3g0093811 49.412 85 42 1 57 140 15 99 3.12e-19 85.9
Msa0319390 MtrunA17_Chr3g0125801 34.646 127 82 1 18 144 8 133 1.16e-18 84.7
Msa0319390 MtrunA17_Chr5g0434901 57.353 68 29 0 58 125 7 74 1.32e-18 80.5
Msa0319390 MtrunA17_Chr7g0229131 51.389 72 35 0 57 128 5 76 5.25e-18 80.1
Msa0319390 MtrunA17_Chr7g0228401 43.023 86 48 1 35 120 288 372 5.91e-18 84.3
Msa0319390 MtrunA17_Chr8g0362231 37.143 140 73 4 29 159 25 158 7.78e-18 84.0
Msa0319390 MtrunA17_Chr5g0416341 40.594 101 59 1 29 129 29 128 1.76e-17 82.8
Msa0319390 MtrunA17_Chr7g0233061 41.121 107 52 4 26 127 180 280 1.95e-17 82.0
Msa0319390 MtrunA17_Chr7g0228481 30.719 153 102 3 12 164 208 356 1.21e-16 80.1
Msa0319390 MtrunA17_Chr1g0177901 40.698 86 50 1 35 120 3 87 6.95e-16 75.5
Msa0319390 MtrunA17_Chr1g0193901 42.222 90 50 2 18 105 5 94 5.08e-13 64.7
Msa0319390 MtrunA17_Chr1g0193891 42.222 90 50 2 18 105 5 94 5.08e-13 64.7
Msa0319390 MtrunA17_Chr1g0193871 42.222 90 50 2 18 105 5 94 5.08e-13 64.7
Msa0319390 MtrunA17_Chr1g0193881 42.222 90 50 2 18 105 5 94 5.08e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0319390 AT5G49620.1 54.462 325 82 12 19 324 21 298 1.74e-88 268
Msa0319390 AT1G48000.1 74.675 154 35 1 22 175 30 179 6.11e-85 256
Msa0319390 AT5G49620.2 52.212 339 82 13 19 324 21 312 1.33e-84 258
Msa0319390 AT3G06490.1 50.148 337 111 11 1 316 1 301 1.48e-84 258
Msa0319390 AT2G47190.1 74.648 142 36 0 19 160 15 156 1.54e-78 241
Msa0319390 AT1G68320.1 71.329 143 41 0 23 165 18 160 1.14e-74 231
Msa0319390 AT1G25340.1 63.576 151 55 0 25 175 19 169 1.15e-69 219
Msa0319390 AT3G27810.1 80.000 110 22 0 21 130 17 126 2.92e-65 206
Msa0319390 AT1G25340.2 60.927 151 54 1 25 175 19 164 2.65e-64 205
Msa0319390 AT1G25340.3 60.927 151 54 1 25 175 19 164 7.31e-64 204
Msa0319390 AT5G40350.1 80.952 105 20 0 23 127 16 120 1.24e-62 198
Msa0319390 AT3G01530.1 71.681 113 32 0 17 129 18 130 1.02e-60 193
Msa0319390 AT3G24310.1 67.890 109 35 0 21 129 15 123 4.28e-50 168
Msa0319390 AT4G13480.1 68.571 105 33 0 25 129 7 111 2.73e-49 166
Msa0319390 AT3G30210.1 66.667 105 35 0 25 129 28 132 3.64e-49 166
Msa0319390 AT3G02940.2 60.000 115 46 0 20 134 8 122 1.96e-45 157
Msa0319390 AT5G59780.3 59.091 110 45 0 23 132 7 116 3.46e-45 154
Msa0319390 AT3G02940.1 60.000 115 46 0 20 134 8 122 3.82e-45 157
Msa0319390 AT3G02940.3 60.000 115 46 0 20 134 8 122 3.82e-45 157
Msa0319390 AT3G46130.1 58.929 112 46 0 25 136 10 121 3.93e-45 155
Msa0319390 AT5G16770.4 53.676 136 61 2 20 153 8 143 6.39e-44 153
Msa0319390 AT5G16770.3 53.676 136 61 2 20 153 8 143 6.39e-44 153
Msa0319390 AT5G16770.1 53.676 136 61 2 20 153 8 143 1.10e-43 153
Msa0319390 AT5G16770.2 53.676 136 61 2 20 153 8 143 1.10e-43 153
Msa0319390 AT5G54230.1 56.757 111 48 0 24 134 12 122 1.54e-43 152
Msa0319390 AT3G27810.2 85.135 74 11 0 57 130 4 77 2.02e-43 147
Msa0319390 AT3G13540.1 55.285 123 55 0 21 143 20 142 4.00e-43 149
Msa0319390 AT4G05100.1 58.559 111 46 0 24 134 13 123 5.50e-43 151
Msa0319390 AT4G34990.1 67.327 101 33 0 26 126 14 114 6.85e-43 149
Msa0319390 AT5G65230.1 54.918 122 55 0 18 139 6 127 7.33e-43 150
Msa0319390 AT4G21440.1 56.757 111 48 0 24 134 12 122 7.53e-43 151
Msa0319390 AT3G23250.1 40.462 173 99 1 20 192 8 176 1.30e-42 149
Msa0319390 AT4G28110.1 58.879 107 44 0 20 126 8 114 1.51e-42 149
Msa0319390 AT5G15310.1 55.652 115 51 0 20 134 8 122 1.90e-42 150
Msa0319390 AT5G15310.4 55.652 115 51 0 20 134 8 122 1.94e-42 147
Msa0319390 AT5G15310.2 55.652 115 51 0 20 134 8 122 1.99e-42 149
Msa0319390 AT1G22640.1 57.265 117 50 0 24 140 12 128 3.16e-42 147
Msa0319390 AT1G16490.1 58.879 107 44 0 20 126 10 116 5.54e-42 147
Msa0319390 AT3G01140.2 52.033 123 59 0 20 142 8 130 6.20e-42 149
Msa0319390 AT5G10280.1 55.652 115 51 0 20 134 8 122 7.61e-42 148
Msa0319390 AT1G34670.1 40.201 199 104 3 20 203 8 206 1.00e-41 149
Msa0319390 AT3G01140.1 52.033 123 59 0 20 142 51 173 1.70e-41 149
Msa0319390 AT5G14340.1 56.522 115 50 0 20 134 20 134 1.77e-41 145
Msa0319390 AT1G35515.1 61.165 103 40 0 24 126 12 114 2.12e-41 144
Msa0319390 AT4G09460.1 62.376 101 38 0 26 126 14 114 3.17e-41 144
Msa0319390 AT1G18570.1 60.377 106 42 0 21 126 10 115 3.29e-41 147
Msa0319390 AT1G09540.1 55.172 116 52 0 24 139 12 127 3.34e-41 147
Msa0319390 AT4G22680.1 52.500 120 57 0 20 139 8 127 3.45e-41 145
Msa0319390 AT5G07690.1 58.252 103 43 0 24 126 12 114 6.66e-41 146
Msa0319390 AT4G12350.1 52.500 120 57 0 20 139 8 127 7.55e-41 144
Msa0319390 AT2G16720.1 61.165 103 40 0 24 126 12 114 8.71e-41 144
Msa0319390 AT1G57560.1 60.194 103 41 0 24 126 12 114 1.13e-40 145
Msa0319390 AT3G53200.1 60.377 106 42 0 21 126 6 111 1.14e-40 142
Msa0319390 AT5G40350.2 84.507 71 11 0 57 127 5 75 1.19e-40 140
Msa0319390 AT2G47460.1 59.813 107 43 0 20 126 8 114 1.51e-40 145
Msa0319390 AT4G38620.1 62.376 101 38 0 26 126 14 114 1.53e-40 143
Msa0319390 AT1G57560.2 60.194 103 41 0 24 126 12 114 1.55e-40 143
Msa0319390 AT3G13890.2 56.311 103 45 0 24 126 12 114 1.59e-40 145
Msa0319390 AT5G40330.1 53.509 114 53 0 13 126 1 114 1.68e-40 141
Msa0319390 AT1G79180.1 54.955 111 50 0 20 130 10 120 2.14e-40 143
Msa0319390 AT5G14750.1 56.731 104 45 0 23 126 15 118 2.17e-40 140
Msa0319390 AT5G07700.1 57.282 103 44 0 24 126 12 114 2.24e-40 144
Msa0319390 AT5G07700.2 57.282 103 44 0 24 126 12 114 2.24e-40 144
Msa0319390 AT5G61420.2 57.282 103 44 0 24 126 12 114 3.90e-40 144
Msa0319390 AT1G06180.1 52.893 121 57 0 20 140 8 128 5.14e-40 141
Msa0319390 AT3G11440.2 54.369 103 47 0 24 126 41 143 5.93e-40 146
Msa0319390 AT1G66230.1 52.174 115 55 0 20 134 8 122 6.23e-40 142
Msa0319390 AT3G47600.1 51.282 117 55 1 20 134 8 124 6.63e-40 143
Msa0319390 AT3G61250.1 50.833 120 59 0 20 139 8 127 8.39e-40 142
Msa0319390 AT5G26660.1 54.955 111 50 0 24 134 12 122 8.64e-40 143
Msa0319390 AT2G31180.1 57.944 107 45 0 20 126 8 114 8.68e-40 140
Msa0319390 AT1G56160.1 57.009 107 46 0 20 126 10 116 8.86e-40 142
Msa0319390 AT5G60890.1 55.652 115 51 0 21 135 9 123 9.72e-40 142
Msa0319390 AT5G16600.1 52.174 115 55 0 20 134 8 122 1.09e-39 142
Msa0319390 AT4G26930.1 55.140 107 48 0 24 130 19 125 1.77e-39 143
Msa0319390 AT3G27920.1 56.731 104 45 0 23 126 13 116 1.83e-39 139
Msa0319390 AT4G17785.2 35.521 259 145 6 19 266 8 255 2.97e-39 142
Msa0319390 AT3G11440.3 52.830 106 50 0 24 129 41 146 3.55e-39 145
Msa0319390 AT3G11440.4 52.830 106 50 0 24 129 41 146 3.55e-39 145
Msa0319390 AT3G11440.1 52.830 106 50 0 24 129 41 146 3.55e-39 145
Msa0319390 AT5G35550.1 61.538 104 40 0 23 126 13 116 4.54e-39 139
Msa0319390 AT4G17785.1 35.521 259 145 6 19 266 8 255 4.65e-39 142
Msa0319390 AT5G06100.1 53.774 106 49 0 24 129 32 137 4.74e-39 143
Msa0319390 AT5G49330.1 57.944 107 45 0 20 126 8 114 4.89e-39 141
Msa0319390 AT1G63910.1 56.075 107 47 0 24 130 12 118 9.49e-39 141
Msa0319390 AT3G62610.1 57.009 107 46 0 20 126 8 114 1.01e-38 140
Msa0319390 AT3G08500.1 58.491 106 44 0 24 129 30 135 1.38e-38 140
Msa0319390 AT5G06100.5 53.774 106 49 0 24 129 32 137 1.89e-38 143
Msa0319390 AT5G06100.2 53.774 106 49 0 24 129 32 137 1.89e-38 143
Msa0319390 AT5G06100.3 53.774 106 49 0 24 129 32 137 1.89e-38 143
Msa0319390 AT5G06100.4 53.774 106 49 0 24 129 32 137 1.89e-38 143
Msa0319390 AT2G32460.2 51.887 106 51 0 24 129 6 111 2.15e-38 142
Msa0319390 AT2G32460.1 51.887 106 51 0 24 129 18 123 2.16e-38 142
Msa0319390 AT5G62320.1 48.872 133 61 1 20 145 9 141 3.29e-38 136
Msa0319390 AT5G55020.1 51.327 113 55 0 18 130 20 132 4.49e-38 142
Msa0319390 AT5G62470.2 50.000 112 56 0 20 131 8 119 1.07e-37 138
Msa0319390 AT5G52600.1 56.311 103 45 0 24 126 12 114 1.09e-37 134
Msa0319390 AT1G74080.1 57.282 103 44 0 24 126 12 114 1.09e-37 137
Msa0319390 AT5G12870.1 51.852 108 52 0 24 131 18 125 1.26e-37 135
Msa0319390 AT3G13890.1 51.786 112 45 1 24 126 12 123 1.58e-37 137
Msa0319390 AT1G08810.1 46.032 126 68 0 20 145 8 133 1.80e-37 135
Msa0319390 AT1G74650.1 49.558 113 57 0 20 132 8 120 2.06e-37 136
Msa0319390 AT3G12720.1 51.456 103 50 0 24 126 22 124 2.72e-37 135
Msa0319390 AT4G01680.3 56.311 103 45 0 24 126 12 114 4.31e-37 133
Msa0319390 AT4G01680.1 54.717 106 48 0 24 129 12 117 7.15e-37 135
Msa0319390 AT2G26960.1 50.442 113 52 1 18 126 10 122 2.76e-36 135
Msa0319390 AT3G28910.1 49.565 115 58 0 20 134 8 122 6.86e-36 132
Msa0319390 AT5G62470.1 50.000 112 55 1 20 131 8 118 9.27e-36 132
Msa0319390 AT4G37780.1 53.704 108 49 1 20 126 8 115 9.74e-36 131
Msa0319390 AT1G74430.1 53.398 103 48 0 24 126 12 114 4.07e-35 129
Msa0319390 AT5G56110.1 49.593 123 61 1 23 144 11 133 4.71e-35 130
Msa0319390 AT4G25560.1 53.922 102 47 0 25 126 11 112 5.80e-35 129
Msa0319390 AT3G49690.1 53.704 108 49 1 20 126 8 115 1.20e-34 129
Msa0319390 AT3G12820.1 53.271 107 50 0 20 126 10 116 1.44e-34 126
Msa0319390 AT3G48920.1 50.980 102 50 0 25 126 19 120 2.01e-34 127
Msa0319390 AT5G57620.1 52.778 108 50 1 20 126 8 115 2.61e-34 128
Msa0319390 AT3G28470.1 50.485 103 51 0 20 122 8 110 2.91e-34 128
Msa0319390 AT5G23000.1 51.852 108 51 1 20 126 8 115 3.19e-34 128
Msa0319390 AT5G52260.1 55.882 102 45 0 25 126 13 114 3.43e-34 126
Msa0319390 AT1G79180.2 42.361 144 50 1 20 130 10 153 7.18e-34 127
Msa0319390 AT2G36890.1 53.704 108 49 1 20 126 8 115 8.80e-34 126
Msa0319390 AT5G65790.1 48.000 125 60 2 20 143 8 128 1.06e-33 127
Msa0319390 AT4G01680.2 49.153 118 48 1 24 129 12 129 1.76e-33 126
Msa0319390 AT2G36890.2 53.704 108 49 1 20 126 49 156 1.80e-33 126
Msa0319390 AT3G46130.3 64.634 82 29 0 55 136 8 89 3.52e-33 122
Msa0319390 AT5G59780.2 68.421 76 24 0 57 132 20 95 7.71e-33 121
Msa0319390 AT3G46130.4 66.250 80 27 0 57 136 20 99 1.06e-32 121
Msa0319390 AT1G66370.1 50.000 110 55 0 24 133 8 117 3.03e-32 120
Msa0319390 AT3G60460.1 44.545 110 60 1 23 131 10 119 8.64e-32 121
Msa0319390 AT1G18710.1 49.515 103 52 0 24 126 12 114 6.05e-31 118
Msa0319390 AT3G53200.2 67.143 70 23 0 57 126 9 78 3.40e-29 111
Msa0319390 AT1G66380.1 53.398 103 48 0 24 126 8 110 3.90e-28 106
Msa0319390 AT1G56650.1 40.116 172 101 2 24 195 8 177 4.66e-28 109
Msa0319390 AT5G26660.2 58.974 78 32 0 57 134 14 91 2.78e-27 109
Msa0319390 AT1G66390.1 53.398 103 48 0 24 126 8 110 5.52e-27 107
Msa0319390 AT5G35550.2 63.158 76 28 0 51 126 44 119 1.44e-26 106
Msa0319390 AT3G47600.2 57.500 80 32 1 57 134 39 118 8.40e-26 105
Msa0319390 AT5G11050.1 38.519 135 75 3 26 154 105 237 1.03e-25 106
Msa0319390 AT2G26950.1 39.640 111 63 1 17 123 5 115 2.04e-25 105
Msa0319390 AT5G11510.3 43.269 104 58 1 23 126 78 180 2.95e-25 107
Msa0319390 AT5G11510.1 43.269 104 58 1 23 126 78 180 2.95e-25 107
Msa0319390 AT5G11510.4 43.269 104 58 1 23 126 78 180 2.95e-25 107
Msa0319390 AT5G11510.2 43.269 104 58 1 23 126 78 180 3.37e-25 106
Msa0319390 AT5G11510.5 43.269 104 58 1 23 126 78 180 3.45e-25 106
Msa0319390 AT3G09370.2 41.121 107 62 1 23 129 132 237 7.03e-25 105
Msa0319390 AT3G09370.1 41.121 107 62 1 23 129 127 232 7.76e-25 105
Msa0319390 AT3G09370.3 41.121 107 62 1 23 129 140 245 9.65e-25 104
Msa0319390 AT5G14750.3 62.687 67 25 0 60 126 18 84 1.27e-24 98.6
Msa0319390 AT3G12820.2 64.179 67 24 0 60 126 2 68 1.31e-24 99.0
Msa0319390 AT5G58850.1 38.525 122 68 2 23 138 102 222 1.93e-24 103
Msa0319390 AT3G27785.1 41.667 108 61 2 26 132 189 295 2.57e-24 102
Msa0319390 AT5G02320.1 41.346 104 60 1 23 126 124 226 2.93e-24 103
Msa0319390 AT5G02320.2 41.346 104 60 1 23 126 124 226 2.93e-24 103
Msa0319390 AT5G02320.3 41.346 104 60 1 23 126 64 166 5.83e-24 102
Msa0319390 AT4G18770.1 40.000 110 65 1 24 133 215 323 6.45e-24 101
Msa0319390 AT2G23290.1 42.593 108 61 1 21 128 8 114 1.17e-23 99.4
Msa0319390 AT4G32730.5 38.462 104 63 1 23 126 84 186 9.02e-23 99.8
Msa0319390 AT4G32730.4 38.462 104 63 1 23 126 84 186 9.02e-23 99.8
Msa0319390 AT4G32730.3 38.462 104 63 1 23 126 84 186 9.02e-23 99.8
Msa0319390 AT4G32730.2 38.462 104 63 1 23 126 84 186 9.02e-23 99.8
Msa0319390 AT4G32730.1 38.462 104 63 1 23 126 84 186 1.18e-22 99.4
Msa0319390 AT4G37260.1 39.823 113 62 2 26 138 13 119 5.14e-22 95.1
Msa0319390 AT5G67300.1 33.974 156 94 3 23 178 3 149 7.83e-22 94.4
Msa0319390 AT2G39880.1 38.971 136 79 3 26 160 50 182 1.10e-21 94.7
Msa0319390 AT3G55730.1 40.566 106 62 1 26 131 56 160 2.49e-21 94.0
Msa0319390 AT3G09230.1 43.269 104 58 1 23 126 52 154 5.56e-21 93.2
Msa0319390 AT1G17950.1 41.905 105 60 1 26 130 5 108 5.93e-21 90.5
Msa0319390 AT1G69560.2 40.000 105 62 1 26 130 123 226 6.31e-21 92.4
Msa0319390 AT1G69560.1 40.000 105 62 1 26 130 107 210 6.34e-21 92.0
Msa0319390 AT3G29020.1 40.000 105 62 1 26 130 65 168 8.25e-21 89.7
Msa0319390 AT3G29020.2 40.000 105 62 1 26 130 67 170 1.12e-20 90.9
Msa0319390 AT1G26780.2 39.252 107 64 1 24 130 96 201 1.32e-20 91.7
Msa0319390 AT1G26780.1 42.424 99 56 1 24 122 96 193 1.86e-20 89.7
Msa0319390 AT5G17800.1 40.541 111 59 2 26 130 93 202 2.01e-20 90.5
Msa0319390 AT5G40360.1 36.364 110 68 2 24 132 156 264 5.82e-20 89.7
Msa0319390 AT3G50060.1 37.736 106 65 1 23 128 3 107 7.74e-20 88.6
Msa0319390 AT1G22640.3 56.338 71 31 0 70 140 1 71 8.81e-20 86.3
Msa0319390 AT1G73410.1 42.857 105 59 1 26 130 6 109 1.14e-19 87.0
Msa0319390 AT1G73410.2 42.857 105 59 1 26 130 6 109 1.99e-19 85.5
Msa0319390 AT2G25230.1 40.566 106 59 2 23 125 23 127 2.20e-19 85.9
Msa0319390 AT3G23250.2 35.537 121 74 1 70 190 1 117 2.79e-19 85.5
Msa0319390 AT1G66380.3 58.571 70 29 0 57 126 8 77 1.37e-18 80.5
Msa0319390 AT4G33450.1 38.679 106 64 1 25 130 18 122 1.75e-18 84.0
Msa0319390 AT5G39700.1 38.889 108 65 1 15 122 45 151 3.89e-18 81.6
Msa0319390 AT5G59780.1 66.667 51 17 0 82 132 1 51 4.26e-18 80.9
Msa0319390 AT3G46130.2 63.636 55 20 0 82 136 1 55 5.71e-18 81.3
Msa0319390 AT1G71030.1 39.000 100 60 1 48 147 5 103 2.11e-17 79.7
Msa0319390 AT1G14350.2 40.594 101 59 1 29 129 28 127 2.93e-17 82.4
Msa0319390 AT1G14350.1 40.594 101 59 1 29 129 28 127 2.93e-17 82.4
Msa0319390 AT2G37630.1 35.780 109 68 1 26 132 4 112 3.43e-17 82.0
Msa0319390 AT5G14750.4 57.895 57 24 0 70 126 1 57 3.62e-17 77.4
Msa0319390 AT5G14750.2 57.895 57 24 0 70 126 1 57 3.62e-17 77.4
Msa0319390 AT1G71030.2 42.353 85 49 0 63 147 5 89 4.04e-17 78.6
Msa0319390 AT1G66380.2 50.794 63 31 0 24 86 8 70 7.49e-17 75.9
Msa0319390 AT2G02820.2 33.333 162 93 4 15 166 17 173 1.12e-16 80.9
Msa0319390 AT4G00540.2 36.036 111 67 2 24 131 101 210 1.28e-16 80.5
Msa0319390 AT2G02820.1 33.333 162 93 4 15 166 17 173 1.28e-16 80.9
Msa0319390 AT4G00540.1 36.036 111 67 2 24 131 99 208 2.41e-16 79.7
Msa0319390 AT2G02820.3 33.333 162 93 4 15 166 17 173 2.95e-16 79.0
Msa0319390 AT1G18960.1 32.110 109 71 2 26 134 10 115 3.78e-16 78.2
Msa0319390 AT5G40430.1 36.792 106 62 3 23 125 51 154 3.98e-15 74.3
Msa0319390 AT4G25560.2 60.000 45 18 0 82 126 2 46 9.45e-13 67.0
Msa0319390 AT1G14350.3 44.444 63 35 0 68 130 23 85 6.59e-11 63.2
Msa0319390 AT1G14350.4 44.444 63 35 0 68 130 23 85 6.59e-11 63.2

Find 96 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGTAAGTATTGTGCAATTT+TGG 0.168994 2_4:-19010273 None:intergenic
TGTTGGTAATAATCAGAATT+AGG 0.176139 2_4:-19010764 None:intergenic
TACCAACAAGCTCAGCAATT+TGG 0.199585 2_4:+19010779 Msa0319390:CDS
GGGACACATCTGACAATTTC+TGG 0.217259 2_4:+19010888 Msa0319390:CDS
ATCTCGTTGTCTGTTCTTCC+CGG 0.266163 2_4:-19010293 None:intergenic
ACAACGAGATCAAGAATTAT+TGG 0.314777 2_4:+19010306 Msa0319390:CDS
CCTTGAATCCAAGGAGTGTT+TGG 0.318256 2_4:-19010866 None:intergenic
ACCAACAAGCTCAGCAATTT+GGG 0.318446 2_4:+19010780 Msa0319390:CDS
GCTGCATCATCGGATTCATT+TGG 0.322005 2_4:+19010665 Msa0319390:CDS
GGTGGCTCGGGTGGCGGAGG+TGG 0.323196 2_4:-19010450 None:intergenic
TGGCGCCGCGGCTGCATCAT+CGG 0.345089 2_4:+19010655 Msa0319390:CDS
GTTGGTAATAATCAGAATTA+GGG 0.353037 2_4:-19010763 None:intergenic
ATCTGGATTGTTCCCTCAAA+TGG 0.353663 2_4:+19010826 Msa0319390:CDS
CCTTTGGATGCCAAGGTTAG+TGG 0.355811 2_4:+19010406 Msa0319390:CDS
TACGTCACATTTGAGTTGTT+TGG 0.355884 2_4:-19010351 None:intergenic
TTCATAGTCGTTGGGGAAAC+CGG 0.357053 2_4:+19009973 Msa0319390:CDS
CGAGCCACCGCCACTAATAA+TGG 0.357709 2_4:+19010464 Msa0319390:CDS
CAAAATTGCACAATACTTAC+CGG 0.367480 2_4:+19010274 Msa0319390:CDS
ATGTTACCACGACGAACATC+TGG 0.367650 2_4:-19009918 None:intergenic
GATTGCATCACTAGCCCATC+TGG 0.373109 2_4:+19010809 Msa0319390:CDS
CTGCATCATCGGATTCATTT+GGG 0.373323 2_4:+19010666 Msa0319390:CDS
GGCGGTGGCTCGGGTGGCGG+AGG 0.377228 2_4:-19010453 None:intergenic
AAGATGCCATGCGCTACCTT+TGG 0.397038 2_4:+19010390 Msa0319390:CDS
AACAAAATTTCAATATTTCA+TGG 0.398110 2_4:+19009080 Msa0319390:exon
CATTATTAGTGGCGGTGGCT+CGG 0.400688 2_4:-19010463 None:intergenic
ACCCAAATTGCTGAGCTTGT+TGG 0.406996 2_4:-19010781 None:intergenic
CTCAATGACATGTGAAAGTA+AGG 0.408685 2_4:+19010941 Msa0319390:exon
TGTTGGTGTTCATAATTGTT+GGG 0.412586 2_4:-19010580 None:intergenic
CCAAGGAGTGTTTGGTTCCA+TGG 0.416961 2_4:-19010858 None:intergenic
CCAAACACTCCTTGGATTCA+AGG 0.418970 2_4:+19010866 Msa0319390:CDS
TTCTTGAACTTCATAGTCGT+TGG 0.421499 2_4:+19009964 Msa0319390:CDS
TCTTGAACTTCATAGTCGTT+GGG 0.421944 2_4:+19009965 Msa0319390:CDS
ATCAATTACATTGCAAATCA+TGG 0.428806 2_4:+19009210 Msa0319390:CDS
TCGGGTGGCGGAGGTGGATG+CGG 0.434916 2_4:-19010444 None:intergenic
AGTGGCGGTGGCTCGGGTGG+CGG 0.441443 2_4:-19010456 None:intergenic
AATATAATAAATTCATATGT+AGG 0.450845 2_4:+19011027 Msa0319390:three_prime_UTR
ATTATTAGTGGCGGTGGCTC+GGG 0.451809 2_4:-19010462 None:intergenic
GTTATAGGACTCAAACGAAC+TGG 0.452310 2_4:+19009858 Msa0319390:intron
ATTTCAATATTTCATGGAAG+TGG 0.456263 2_4:+19009086 Msa0319390:exon
TATTGTTGTTACTACCAACT+TGG 0.458463 2_4:-19010736 None:intergenic
AGATTAGGAGAAAGAGAAAG+AGG 0.461042 2_4:-19008907 None:intergenic
CCATGGAACCAAACACTCCT+TGG 0.463876 2_4:+19010858 Msa0319390:CDS
TCTTGAGTCAATTCCGAGAC+AGG 0.470088 2_4:-19010701 None:intergenic
AACATATACATATCCAAAGT+AGG 0.471344 2_4:+19009054 Msa0319390:five_prime_UTR
CGGAGGTGGATGCGGCAGCT+TGG 0.476078 2_4:-19010436 None:intergenic
TATGTTATATGTCGTATTGT+TGG 0.476207 2_4:-19010516 None:intergenic
TCAAATGGATTTCAGTTCCA+TGG 0.479194 2_4:+19010841 Msa0319390:CDS
ACTTGGTGAACCATTATTAG+TGG 0.482800 2_4:-19010474 None:intergenic
CATGTGAAAGTAAGGAAAGA+GGG 0.484348 2_4:+19010949 Msa0319390:exon
CTGTTGGTGTTCATAATTGT+TGG 0.485187 2_4:-19010581 None:intergenic
AACACTCTTGCTCGTTCAGC+TGG 0.485635 2_4:+19009246 Msa0319390:CDS
TTTGCTTTGATATTAGTTTG+AGG 0.486020 2_4:-19008964 None:intergenic
GACACAAGTTTCGCCTGTCT+CGG 0.486609 2_4:+19010688 Msa0319390:CDS
GCGCCATTGCTACTATTCTC+TGG 0.490228 2_4:-19010638 None:intergenic
ATGAACACCAACAGTTTATG+TGG 0.492470 2_4:+19010590 Msa0319390:CDS
ATGGAACTGAAATCCATTTG+AGG 0.515326 2_4:-19010839 None:intergenic
GTTATATGTCGTATTGTTGG+TGG 0.520096 2_4:-19010513 None:intergenic
TGAACCATTATTAGTGGCGG+TGG 0.522243 2_4:-19010468 None:intergenic
CAAATCATGGTGAAGGTCGA+TGG 0.524948 2_4:+19009223 Msa0319390:CDS
GATCCAACTCATCATCACTT+TGG 0.528166 2_4:-19009146 None:intergenic
CTCATCATCACTTTGGAGCA+TGG 0.530302 2_4:-19009139 None:intergenic
TGGAACTGAAATCCATTTGA+GGG 0.531486 2_4:-19010838 None:intergenic
TGCGCTACCTTTGGATGCCA+AGG 0.532069 2_4:+19010399 Msa0319390:CDS
CAAACACTCCTTGGATTCAA+GGG 0.533991 2_4:+19010867 Msa0319390:CDS
AGATCTTCATCGACGGTCCA+TGG 0.536902 2_4:-19009180 None:intergenic
ATTAGTGGCGGTGGCTCGGG+TGG 0.538647 2_4:-19010459 None:intergenic
ACATGTGAAAGTAAGGAAAG+AGG 0.547213 2_4:+19010948 Msa0319390:exon
GATTATTACAATGTCCAAGT+TGG 0.548318 2_4:+19010722 Msa0319390:CDS
CTTGAACTTCATAGTCGTTG+GGG 0.553574 2_4:+19009966 Msa0319390:CDS
TACATTGCAAATCATGGTGA+AGG 0.554565 2_4:+19009216 Msa0319390:CDS
GATGTGTCCCCTTGAATCCA+AGG 0.564896 2_4:-19010875 None:intergenic
CAATATTTCATGGAAGTGGA+AGG 0.568241 2_4:+19009090 Msa0319390:exon
ACATATACATATCCAAAGTA+GGG 0.573104 2_4:+19009055 Msa0319390:five_prime_UTR
CCACTAACCTTGGCATCCAA+AGG 0.583224 2_4:-19010406 None:intergenic
GCTCCAAAGTGATGATGAGT+TGG 0.588477 2_4:+19009143 Msa0319390:CDS
TGGATGCGCTCCACTAACCT+TGG 0.601618 2_4:-19010416 None:intergenic
ACTAATAATGGTTCACCAAG+TGG 0.601663 2_4:+19010476 Msa0319390:CDS
GTTGGTGTTCATAATTGTTG+GGG 0.602853 2_4:-19010579 None:intergenic
ACTCCAGAGAATAGTAGCAA+TGG 0.604297 2_4:+19010635 Msa0319390:CDS
ATTTGAGGGAACAATCCAGA+TGG 0.604631 2_4:-19010824 None:intergenic
TGAATCCGATGATGCAGCCG+CGG 0.612957 2_4:-19010660 None:intergenic
GCTTTGATATTAGTTTGAGG+AGG 0.618517 2_4:-19008961 None:intergenic
TGGCATCCAAAGGTAGCGCA+TGG 0.621698 2_4:-19010396 None:intergenic
GTGACCGCTGTTGTACCACT+TGG 0.627383 2_4:-19010491 None:intergenic
AAAATTGCACAATACTTACC+GGG 0.631573 2_4:+19010275 Msa0319390:CDS
TGGATCTTCGAAGAGGACCA+TGG 0.638658 2_4:+19009163 Msa0319390:CDS
TTTGAGGGAACAATCCAGAT+GGG 0.640469 2_4:-19010823 None:intergenic
TGGTGAACCATTATTAGTGG+CGG 0.649612 2_4:-19010471 None:intergenic
GAGAGCAAGATCTTCATCGA+CGG 0.650210 2_4:-19009187 None:intergenic
AAACACTCCTTGGATTCAAG+GGG 0.650871 2_4:+19010868 Msa0319390:CDS
GAATAGTAGCAATGGCGCCG+CGG 0.659766 2_4:+19010643 Msa0319390:CDS
CTTCGTCCAGATGTTCGTCG+TGG 0.664020 2_4:+19009912 Msa0319390:CDS
GCAAGAGCTGTAGATTGAGA+TGG 0.670049 2_4:+19009880 Msa0319390:CDS
ATGTGAACCACATAAACTGT+TGG 0.680313 2_4:-19010597 None:intergenic
GATGAGTTGGATCTTCGAAG+AGG 0.682976 2_4:+19009156 Msa0319390:CDS
TTCACCAAGTGGTACAACAG+CGG 0.730136 2_4:+19010487 Msa0319390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAACTATATATTTATATTA+TGG + chr2_4:19009327-19009346 Msa0319390:intron 10.0%
!!! TTTTTTACTTTATTTAATAC+GGG - chr2_4:19009761-19009780 None:intergenic 10.0%
!! AGAACTATATATTTATATTA+TGG + chr2_4:19009327-19009346 Msa0319390:intron 10.0%
!!! TTTTTTACTTTATTTAATAC+GGG - chr2_4:19009761-19009780 None:intergenic 10.0%
!! AACAAAATTTCAATATTTCA+TGG + chr2_4:19009080-19009099 Msa0319390:exon 15.0%
!!! GTATATTTTTCTAGTTTTTA+TGG + chr2_4:19009294-19009313 Msa0319390:intron 15.0%
!! AAAAACAAAATTTCTTCAAT+TGG - chr2_4:19009838-19009857 None:intergenic 15.0%
!!! AGAAATTTTGTTTTTGTTAT+AGG + chr2_4:19009843-19009862 Msa0319390:intron 15.0%
!!! TTTCTGTCTTTAATTTATTT+TGG + chr2_4:19010172-19010191 Msa0319390:intron 15.0%
!!! TCTTTCTAATTTTAAAATGT+TGG + chr2_4:19010203-19010222 Msa0319390:intron 15.0%
!! AACAAAATTTCAATATTTCA+TGG + chr2_4:19009080-19009099 Msa0319390:exon 15.0%
!!! GTATATTTTTCTAGTTTTTA+TGG + chr2_4:19009294-19009313 Msa0319390:intron 15.0%
!! AAAAACAAAATTTCTTCAAT+TGG - chr2_4:19009838-19009857 None:intergenic 15.0%
!!! AGAAATTTTGTTTTTGTTAT+AGG + chr2_4:19009843-19009862 Msa0319390:intron 15.0%
!!! TTTCTGTCTTTAATTTATTT+TGG + chr2_4:19010172-19010191 Msa0319390:intron 15.0%
!!! TCTTTCTAATTTTAAAATGT+TGG + chr2_4:19010203-19010222 Msa0319390:intron 15.0%
!! CTAGTTAATTTCTATAATTG+TGG + chr2_4:19009436-19009455 Msa0319390:intron 20.0%
!! GGGCATAAATAAATTAATTA+TGG + chr2_4:19009615-19009634 Msa0319390:intron 20.0%
!! ATGAAATACCATATAACTAT+AGG + chr2_4:19009640-19009659 Msa0319390:intron 20.0%
!! CAATTAGAATAGTTAAGTTA+TGG + chr2_4:19010051-19010070 Msa0319390:intron 20.0%
!! TATTTGATTGATCAATTAGA+TGG + chr2_4:19010249-19010268 Msa0319390:intron 20.0%
!! CTAGTTAATTTCTATAATTG+TGG + chr2_4:19009436-19009455 Msa0319390:intron 20.0%
!! GGGCATAAATAAATTAATTA+TGG + chr2_4:19009615-19009634 Msa0319390:intron 20.0%
!! ATGAAATACCATATAACTAT+AGG + chr2_4:19009640-19009659 Msa0319390:intron 20.0%
!! CAATTAGAATAGTTAAGTTA+TGG + chr2_4:19010051-19010070 Msa0319390:intron 20.0%
!! TATTTGATTGATCAATTAGA+TGG + chr2_4:19010249-19010268 Msa0319390:intron 20.0%
!! TTTGCTTTGATATTAGTTTG+AGG - chr2_4:19008967-19008986 None:intergenic 25.0%
! AACATATACATATCCAAAGT+AGG + chr2_4:19009054-19009073 Msa0319390:five_prime_UTR 25.0%
! ACATATACATATCCAAAGTA+GGG + chr2_4:19009055-19009074 Msa0319390:five_prime_UTR 25.0%
!! AAATTTTGTTAACCCTACTT+TGG - chr2_4:19009070-19009089 None:intergenic 25.0%
! ATTTCAATATTTCATGGAAG+TGG + chr2_4:19009086-19009105 Msa0319390:exon 25.0%
! ATCAATTACATTGCAAATCA+TGG + chr2_4:19009210-19009229 Msa0319390:CDS 25.0%
!!! GCTTTTTCCAAAAAATTGAT+TGG - chr2_4:19009500-19009519 None:intergenic 25.0%
! CTAACATAATCACTATCATA+TGG - chr2_4:19009555-19009574 None:intergenic 25.0%
! AAATACCATATAACTATAGG+TGG + chr2_4:19009643-19009662 Msa0319390:intron 25.0%
! CTAATATTTAACGACGAATT+TGG - chr2_4:19010121-19010140 None:intergenic 25.0%
! TATGTTATATGTCGTATTGT+TGG - chr2_4:19010519-19010538 None:intergenic 25.0%
!!! GTTGGTAATAATCAGAATTA+GGG - chr2_4:19010766-19010785 None:intergenic 25.0%
!!! TGTTGGTAATAATCAGAATT+AGG - chr2_4:19010767-19010786 None:intergenic 25.0%
!! TTTGCTTTGATATTAGTTTG+AGG - chr2_4:19008967-19008986 None:intergenic 25.0%
! AACATATACATATCCAAAGT+AGG + chr2_4:19009054-19009073 Msa0319390:five_prime_UTR 25.0%
! ACATATACATATCCAAAGTA+GGG + chr2_4:19009055-19009074 Msa0319390:five_prime_UTR 25.0%
!! AAATTTTGTTAACCCTACTT+TGG - chr2_4:19009070-19009089 None:intergenic 25.0%
! ATTTCAATATTTCATGGAAG+TGG + chr2_4:19009086-19009105 Msa0319390:exon 25.0%
! ATCAATTACATTGCAAATCA+TGG + chr2_4:19009210-19009229 Msa0319390:CDS 25.0%
!!! GCTTTTTCCAAAAAATTGAT+TGG - chr2_4:19009500-19009519 None:intergenic 25.0%
! CTAACATAATCACTATCATA+TGG - chr2_4:19009555-19009574 None:intergenic 25.0%
! AAATACCATATAACTATAGG+TGG + chr2_4:19009643-19009662 Msa0319390:intron 25.0%
! CTAATATTTAACGACGAATT+TGG - chr2_4:19010121-19010140 None:intergenic 25.0%
! TATGTTATATGTCGTATTGT+TGG - chr2_4:19010519-19010538 None:intergenic 25.0%
!!! GTTGGTAATAATCAGAATTA+GGG - chr2_4:19010766-19010785 None:intergenic 25.0%
!!! TGTTGGTAATAATCAGAATT+AGG - chr2_4:19010767-19010786 None:intergenic 25.0%
GAGAAAAAGAAAGAGAGATT+AGG - chr2_4:19008925-19008944 None:intergenic 30.0%
TTCATGATTGCAATTGTTGA+TGG + chr2_4:19009364-19009383 Msa0319390:intron 30.0%
!!! CATCACACCAATCAATTTTT+TGG + chr2_4:19009490-19009509 Msa0319390:intron 30.0%
AAGAAAAAAACCGCAAACTT+TGG - chr2_4:19009522-19009541 None:intergenic 30.0%
TTAGCCAGGACTTTAATATA+AGG + chr2_4:19009571-19009590 Msa0319390:intron 30.0%
TATGCCTTATATTAAAGTCC+TGG - chr2_4:19009578-19009597 None:intergenic 30.0%
CAAAATTGCACAATACTTAC+CGG + chr2_4:19010274-19010293 Msa0319390:CDS 30.0%
AAAATTGCACAATACTTACC+GGG + chr2_4:19010275-19010294 Msa0319390:CDS 30.0%
ACAACGAGATCAAGAATTAT+TGG + chr2_4:19010306-19010325 Msa0319390:CDS 30.0%
! TGTTGGTGTTCATAATTGTT+GGG - chr2_4:19010583-19010602 None:intergenic 30.0%
GATTATTACAATGTCCAAGT+TGG + chr2_4:19010722-19010741 Msa0319390:CDS 30.0%
! TATTGTTGTTACTACCAACT+TGG - chr2_4:19010739-19010758 None:intergenic 30.0%
GAGAAAAAGAAAGAGAGATT+AGG - chr2_4:19008925-19008944 None:intergenic 30.0%
TTCATGATTGCAATTGTTGA+TGG + chr2_4:19009364-19009383 Msa0319390:intron 30.0%
!!! CATCACACCAATCAATTTTT+TGG + chr2_4:19009490-19009509 Msa0319390:intron 30.0%
AAGAAAAAAACCGCAAACTT+TGG - chr2_4:19009522-19009541 None:intergenic 30.0%
TTAGCCAGGACTTTAATATA+AGG + chr2_4:19009571-19009590 Msa0319390:intron 30.0%
TATGCCTTATATTAAAGTCC+TGG - chr2_4:19009578-19009597 None:intergenic 30.0%
CAAAATTGCACAATACTTAC+CGG + chr2_4:19010274-19010293 Msa0319390:CDS 30.0%
AAAATTGCACAATACTTACC+GGG + chr2_4:19010275-19010294 Msa0319390:CDS 30.0%
ACAACGAGATCAAGAATTAT+TGG + chr2_4:19010306-19010325 Msa0319390:CDS 30.0%
! TGTTGGTGTTCATAATTGTT+GGG - chr2_4:19010583-19010602 None:intergenic 30.0%
GATTATTACAATGTCCAAGT+TGG + chr2_4:19010722-19010741 Msa0319390:CDS 30.0%
! TATTGTTGTTACTACCAACT+TGG - chr2_4:19010739-19010758 None:intergenic 30.0%
AGATTAGGAGAAAGAGAAAG+AGG - chr2_4:19008910-19008929 None:intergenic 35.0%
! GCTTTGATATTAGTTTGAGG+AGG - chr2_4:19008964-19008983 None:intergenic 35.0%
CAATATTTCATGGAAGTGGA+AGG + chr2_4:19009090-19009109 Msa0319390:exon 35.0%
TACATTGCAAATCATGGTGA+AGG + chr2_4:19009216-19009235 Msa0319390:CDS 35.0%
CAATCATGAAACAGCTATAG+TGG - chr2_4:19009354-19009373 None:intergenic 35.0%
! CATAGCGTTGAAGAAAATAG+TGG - chr2_4:19009404-19009423 None:intergenic 35.0%
TTGGAAAAAGCCAAAGTTTG+CGG + chr2_4:19009509-19009528 Msa0319390:intron 35.0%
! TGATAGTGATTATGTTAGCC+AGG + chr2_4:19009557-19009576 Msa0319390:intron 35.0%
GCAGCCAAGCAATTATATAT+GGG - chr2_4:19009669-19009688 None:intergenic 35.0%
TGCAGCCAAGCAATTATATA+TGG - chr2_4:19009670-19009689 None:intergenic 35.0%
TTCTTGAACTTCATAGTCGT+TGG + chr2_4:19009964-19009983 Msa0319390:CDS 35.0%
TCTTGAACTTCATAGTCGTT+GGG + chr2_4:19009965-19009984 Msa0319390:CDS 35.0%
TGCATGTATCTATTGCTTAC+CGG - chr2_4:19009995-19010014 None:intergenic 35.0%
!! CGGTAAGTATTGTGCAATTT+TGG - chr2_4:19010276-19010295 None:intergenic 35.0%
! TGAGTTGTTTGGCATGTTTT+TGG - chr2_4:19010343-19010362 None:intergenic 35.0%
!! TACGTCACATTTGAGTTGTT+TGG - chr2_4:19010354-19010373 None:intergenic 35.0%
! ACTTGGTGAACCATTATTAG+TGG - chr2_4:19010477-19010496 None:intergenic 35.0%
ACTAATAATGGTTCACCAAG+TGG + chr2_4:19010476-19010495 Msa0319390:CDS 35.0%
GTTATATGTCGTATTGTTGG+TGG - chr2_4:19010516-19010535 None:intergenic 35.0%
! GTTGGTGTTCATAATTGTTG+GGG - chr2_4:19010582-19010601 None:intergenic 35.0%
! CTGTTGGTGTTCATAATTGT+TGG - chr2_4:19010584-19010603 None:intergenic 35.0%
ATGAACACCAACAGTTTATG+TGG + chr2_4:19010590-19010609 Msa0319390:CDS 35.0%
ATGTGAACCACATAAACTGT+TGG - chr2_4:19010600-19010619 None:intergenic 35.0%
TGGAACTGAAATCCATTTGA+GGG - chr2_4:19010841-19010860 None:intergenic 35.0%
ATGGAACTGAAATCCATTTG+AGG - chr2_4:19010842-19010861 None:intergenic 35.0%
! TCAAATGGATTTCAGTTCCA+TGG + chr2_4:19010841-19010860 Msa0319390:CDS 35.0%
CTCAATGACATGTGAAAGTA+AGG + chr2_4:19010941-19010960 Msa0319390:exon 35.0%
ACATGTGAAAGTAAGGAAAG+AGG + chr2_4:19010948-19010967 Msa0319390:exon 35.0%
CATGTGAAAGTAAGGAAAGA+GGG + chr2_4:19010949-19010968 Msa0319390:exon 35.0%
AGATTAGGAGAAAGAGAAAG+AGG - chr2_4:19008910-19008929 None:intergenic 35.0%
! GCTTTGATATTAGTTTGAGG+AGG - chr2_4:19008964-19008983 None:intergenic 35.0%
CAATATTTCATGGAAGTGGA+AGG + chr2_4:19009090-19009109 Msa0319390:exon 35.0%
TACATTGCAAATCATGGTGA+AGG + chr2_4:19009216-19009235 Msa0319390:CDS 35.0%
CAATCATGAAACAGCTATAG+TGG - chr2_4:19009354-19009373 None:intergenic 35.0%
! CATAGCGTTGAAGAAAATAG+TGG - chr2_4:19009404-19009423 None:intergenic 35.0%
TTGGAAAAAGCCAAAGTTTG+CGG + chr2_4:19009509-19009528 Msa0319390:intron 35.0%
! TGATAGTGATTATGTTAGCC+AGG + chr2_4:19009557-19009576 Msa0319390:intron 35.0%
GCAGCCAAGCAATTATATAT+GGG - chr2_4:19009669-19009688 None:intergenic 35.0%
TGCAGCCAAGCAATTATATA+TGG - chr2_4:19009670-19009689 None:intergenic 35.0%
TTCTTGAACTTCATAGTCGT+TGG + chr2_4:19009964-19009983 Msa0319390:CDS 35.0%
TCTTGAACTTCATAGTCGTT+GGG + chr2_4:19009965-19009984 Msa0319390:CDS 35.0%
TGCATGTATCTATTGCTTAC+CGG - chr2_4:19009995-19010014 None:intergenic 35.0%
!! CGGTAAGTATTGTGCAATTT+TGG - chr2_4:19010276-19010295 None:intergenic 35.0%
! TGAGTTGTTTGGCATGTTTT+TGG - chr2_4:19010343-19010362 None:intergenic 35.0%
!! TACGTCACATTTGAGTTGTT+TGG - chr2_4:19010354-19010373 None:intergenic 35.0%
! ACTTGGTGAACCATTATTAG+TGG - chr2_4:19010477-19010496 None:intergenic 35.0%
ACTAATAATGGTTCACCAAG+TGG + chr2_4:19010476-19010495 Msa0319390:CDS 35.0%
GTTATATGTCGTATTGTTGG+TGG - chr2_4:19010516-19010535 None:intergenic 35.0%
! GTTGGTGTTCATAATTGTTG+GGG - chr2_4:19010582-19010601 None:intergenic 35.0%
! CTGTTGGTGTTCATAATTGT+TGG - chr2_4:19010584-19010603 None:intergenic 35.0%
ATGAACACCAACAGTTTATG+TGG + chr2_4:19010590-19010609 Msa0319390:CDS 35.0%
ATGTGAACCACATAAACTGT+TGG - chr2_4:19010600-19010619 None:intergenic 35.0%
TGGAACTGAAATCCATTTGA+GGG - chr2_4:19010841-19010860 None:intergenic 35.0%
ATGGAACTGAAATCCATTTG+AGG - chr2_4:19010842-19010861 None:intergenic 35.0%
! TCAAATGGATTTCAGTTCCA+TGG + chr2_4:19010841-19010860 Msa0319390:CDS 35.0%
CTCAATGACATGTGAAAGTA+AGG + chr2_4:19010941-19010960 Msa0319390:exon 35.0%
ACATGTGAAAGTAAGGAAAG+AGG + chr2_4:19010948-19010967 Msa0319390:exon 35.0%
CATGTGAAAGTAAGGAAAGA+GGG + chr2_4:19010949-19010968 Msa0319390:exon 35.0%
GATCCAACTCATCATCACTT+TGG - chr2_4:19009149-19009168 None:intergenic 40.0%
TGAAACAAGACGAGAAGTGA+AGG - chr2_4:19009472-19009491 None:intergenic 40.0%
AAGGCATATACTTCTGTGTG+TGG + chr2_4:19009590-19009609 Msa0319390:intron 40.0%
CATATACTTCTGTGTGTGGT+GGG + chr2_4:19009594-19009613 Msa0319390:intron 40.0%
ATATACTTCTGTGTGTGGTG+GGG + chr2_4:19009595-19009614 Msa0319390:intron 40.0%
ATGGGCCACCTATAGTTATA+TGG - chr2_4:19009651-19009670 None:intergenic 40.0%
GTGGCCCATATATAATTGCT+TGG + chr2_4:19009662-19009681 Msa0319390:intron 40.0%
GTTATAGGACTCAAACGAAC+TGG + chr2_4:19009858-19009877 Msa0319390:intron 40.0%
CTTGAACTTCATAGTCGTTG+GGG + chr2_4:19009966-19009985 Msa0319390:CDS 40.0%
!!! TTTGGCATGTTTTTGGACAC+GGG - chr2_4:19010336-19010355 None:intergenic 40.0%
!!! GTTTGGCATGTTTTTGGACA+CGG - chr2_4:19010337-19010356 None:intergenic 40.0%
TGGTGAACCATTATTAGTGG+CGG - chr2_4:19010474-19010493 None:intergenic 40.0%
ACTCCAGAGAATAGTAGCAA+TGG + chr2_4:19010635-19010654 Msa0319390:CDS 40.0%
CTGCATCATCGGATTCATTT+GGG + chr2_4:19010666-19010685 Msa0319390:CDS 40.0%
TACCAACAAGCTCAGCAATT+TGG + chr2_4:19010779-19010798 Msa0319390:CDS 40.0%
ACCAACAAGCTCAGCAATTT+GGG + chr2_4:19010780-19010799 Msa0319390:CDS 40.0%
TTTGAGGGAACAATCCAGAT+GGG - chr2_4:19010826-19010845 None:intergenic 40.0%
ATTTGAGGGAACAATCCAGA+TGG - chr2_4:19010827-19010846 None:intergenic 40.0%
ATCTGGATTGTTCCCTCAAA+TGG + chr2_4:19010826-19010845 Msa0319390:CDS 40.0%
CAAACACTCCTTGGATTCAA+GGG + chr2_4:19010867-19010886 Msa0319390:CDS 40.0%
AAACACTCCTTGGATTCAAG+GGG + chr2_4:19010868-19010887 Msa0319390:CDS 40.0%
GATCCAACTCATCATCACTT+TGG - chr2_4:19009149-19009168 None:intergenic 40.0%
TGAAACAAGACGAGAAGTGA+AGG - chr2_4:19009472-19009491 None:intergenic 40.0%
AAGGCATATACTTCTGTGTG+TGG + chr2_4:19009590-19009609 Msa0319390:intron 40.0%
CATATACTTCTGTGTGTGGT+GGG + chr2_4:19009594-19009613 Msa0319390:intron 40.0%
ATATACTTCTGTGTGTGGTG+GGG + chr2_4:19009595-19009614 Msa0319390:intron 40.0%
ATGGGCCACCTATAGTTATA+TGG - chr2_4:19009651-19009670 None:intergenic 40.0%
GTGGCCCATATATAATTGCT+TGG + chr2_4:19009662-19009681 Msa0319390:intron 40.0%
GTTATAGGACTCAAACGAAC+TGG + chr2_4:19009858-19009877 Msa0319390:intron 40.0%
CTTGAACTTCATAGTCGTTG+GGG + chr2_4:19009966-19009985 Msa0319390:CDS 40.0%
!!! TTTGGCATGTTTTTGGACAC+GGG - chr2_4:19010336-19010355 None:intergenic 40.0%
!!! GTTTGGCATGTTTTTGGACA+CGG - chr2_4:19010337-19010356 None:intergenic 40.0%
TGGTGAACCATTATTAGTGG+CGG - chr2_4:19010474-19010493 None:intergenic 40.0%
ACTCCAGAGAATAGTAGCAA+TGG + chr2_4:19010635-19010654 Msa0319390:CDS 40.0%
CTGCATCATCGGATTCATTT+GGG + chr2_4:19010666-19010685 Msa0319390:CDS 40.0%
TACCAACAAGCTCAGCAATT+TGG + chr2_4:19010779-19010798 Msa0319390:CDS 40.0%
ACCAACAAGCTCAGCAATTT+GGG + chr2_4:19010780-19010799 Msa0319390:CDS 40.0%
TTTGAGGGAACAATCCAGAT+GGG - chr2_4:19010826-19010845 None:intergenic 40.0%
ATTTGAGGGAACAATCCAGA+TGG - chr2_4:19010827-19010846 None:intergenic 40.0%
ATCTGGATTGTTCCCTCAAA+TGG + chr2_4:19010826-19010845 Msa0319390:CDS 40.0%
CAAACACTCCTTGGATTCAA+GGG + chr2_4:19010867-19010886 Msa0319390:CDS 40.0%
AAACACTCCTTGGATTCAAG+GGG + chr2_4:19010868-19010887 Msa0319390:CDS 40.0%
!! CTCATCATCACTTTGGAGCA+TGG - chr2_4:19009142-19009161 None:intergenic 45.0%
! GCTCCAAAGTGATGATGAGT+TGG + chr2_4:19009143-19009162 Msa0319390:CDS 45.0%
! GATGAGTTGGATCTTCGAAG+AGG + chr2_4:19009156-19009175 Msa0319390:CDS 45.0%
GAGAGCAAGATCTTCATCGA+CGG - chr2_4:19009190-19009209 None:intergenic 45.0%
CAAATCATGGTGAAGGTCGA+TGG + chr2_4:19009223-19009242 Msa0319390:CDS 45.0%
GCATATACTTCTGTGTGTGG+TGG + chr2_4:19009593-19009612 Msa0319390:intron 45.0%
GCAAGAGCTGTAGATTGAGA+TGG + chr2_4:19009880-19009899 Msa0319390:CDS 45.0%
ATGTTACCACGACGAACATC+TGG - chr2_4:19009921-19009940 None:intergenic 45.0%
TTCATAGTCGTTGGGGAAAC+CGG + chr2_4:19009973-19009992 Msa0319390:CDS 45.0%
ATCTCGTTGTCTGTTCTTCC+CGG - chr2_4:19010296-19010315 None:intergenic 45.0%
TGAACCATTATTAGTGGCGG+TGG - chr2_4:19010471-19010490 None:intergenic 45.0%
TTCACCAAGTGGTACAACAG+CGG + chr2_4:19010487-19010506 Msa0319390:CDS 45.0%
GCTGCATCATCGGATTCATT+TGG + chr2_4:19010665-19010684 Msa0319390:CDS 45.0%
TCTTGAGTCAATTCCGAGAC+AGG - chr2_4:19010704-19010723 None:intergenic 45.0%
ACCCAAATTGCTGAGCTTGT+TGG - chr2_4:19010784-19010803 None:intergenic 45.0%
!! CCTTGAATCCAAGGAGTGTT+TGG - chr2_4:19010869-19010888 None:intergenic 45.0%
CCAAACACTCCTTGGATTCA+AGG + chr2_4:19010866-19010885 Msa0319390:CDS 45.0%
GGGACACATCTGACAATTTC+TGG + chr2_4:19010888-19010907 Msa0319390:CDS 45.0%
!! CTCATCATCACTTTGGAGCA+TGG - chr2_4:19009142-19009161 None:intergenic 45.0%
! GCTCCAAAGTGATGATGAGT+TGG + chr2_4:19009143-19009162 Msa0319390:CDS 45.0%
! GATGAGTTGGATCTTCGAAG+AGG + chr2_4:19009156-19009175 Msa0319390:CDS 45.0%
GAGAGCAAGATCTTCATCGA+CGG - chr2_4:19009190-19009209 None:intergenic 45.0%
CAAATCATGGTGAAGGTCGA+TGG + chr2_4:19009223-19009242 Msa0319390:CDS 45.0%
GCATATACTTCTGTGTGTGG+TGG + chr2_4:19009593-19009612 Msa0319390:intron 45.0%
GCAAGAGCTGTAGATTGAGA+TGG + chr2_4:19009880-19009899 Msa0319390:CDS 45.0%
ATGTTACCACGACGAACATC+TGG - chr2_4:19009921-19009940 None:intergenic 45.0%
TTCATAGTCGTTGGGGAAAC+CGG + chr2_4:19009973-19009992 Msa0319390:CDS 45.0%
ATCTCGTTGTCTGTTCTTCC+CGG - chr2_4:19010296-19010315 None:intergenic 45.0%
TGAACCATTATTAGTGGCGG+TGG - chr2_4:19010471-19010490 None:intergenic 45.0%
TTCACCAAGTGGTACAACAG+CGG + chr2_4:19010487-19010506 Msa0319390:CDS 45.0%
GCTGCATCATCGGATTCATT+TGG + chr2_4:19010665-19010684 Msa0319390:CDS 45.0%
TCTTGAGTCAATTCCGAGAC+AGG - chr2_4:19010704-19010723 None:intergenic 45.0%
ACCCAAATTGCTGAGCTTGT+TGG - chr2_4:19010784-19010803 None:intergenic 45.0%
!! CCTTGAATCCAAGGAGTGTT+TGG - chr2_4:19010869-19010888 None:intergenic 45.0%
CCAAACACTCCTTGGATTCA+AGG + chr2_4:19010866-19010885 Msa0319390:CDS 45.0%
GGGACACATCTGACAATTTC+TGG + chr2_4:19010888-19010907 Msa0319390:CDS 45.0%
!!! TTTTTTTACTTTATTTAATA+CGG - chr2_4:19009762-19009781 None:intergenic 5.0%
!!! TTTTTTTACTTTATTTAATA+CGG - chr2_4:19009762-19009781 None:intergenic 5.0%
TGGATCTTCGAAGAGGACCA+TGG + chr2_4:19009163-19009182 Msa0319390:CDS 50.0%
AGATCTTCATCGACGGTCCA+TGG - chr2_4:19009183-19009202 None:intergenic 50.0%
AACACTCTTGCTCGTTCAGC+TGG + chr2_4:19009246-19009265 Msa0319390:CDS 50.0%
AAGATGCCATGCGCTACCTT+TGG + chr2_4:19010390-19010409 Msa0319390:CDS 50.0%
CCACTAACCTTGGCATCCAA+AGG - chr2_4:19010409-19010428 None:intergenic 50.0%
CCTTTGGATGCCAAGGTTAG+TGG + chr2_4:19010406-19010425 Msa0319390:CDS 50.0%
ATTATTAGTGGCGGTGGCTC+GGG - chr2_4:19010465-19010484 None:intergenic 50.0%
CATTATTAGTGGCGGTGGCT+CGG - chr2_4:19010466-19010485 None:intergenic 50.0%
GCGCCATTGCTACTATTCTC+TGG - chr2_4:19010641-19010660 None:intergenic 50.0%
GACACAAGTTTCGCCTGTCT+CGG + chr2_4:19010688-19010707 Msa0319390:CDS 50.0%
GATTGCATCACTAGCCCATC+TGG + chr2_4:19010809-19010828 Msa0319390:CDS 50.0%
!! CCAAGGAGTGTTTGGTTCCA+TGG - chr2_4:19010861-19010880 None:intergenic 50.0%
CCATGGAACCAAACACTCCT+TGG + chr2_4:19010858-19010877 Msa0319390:CDS 50.0%
GATGTGTCCCCTTGAATCCA+AGG - chr2_4:19010878-19010897 None:intergenic 50.0%
TGGATCTTCGAAGAGGACCA+TGG + chr2_4:19009163-19009182 Msa0319390:CDS 50.0%
AGATCTTCATCGACGGTCCA+TGG - chr2_4:19009183-19009202 None:intergenic 50.0%
AACACTCTTGCTCGTTCAGC+TGG + chr2_4:19009246-19009265 Msa0319390:CDS 50.0%
AAGATGCCATGCGCTACCTT+TGG + chr2_4:19010390-19010409 Msa0319390:CDS 50.0%
CCACTAACCTTGGCATCCAA+AGG - chr2_4:19010409-19010428 None:intergenic 50.0%
CCTTTGGATGCCAAGGTTAG+TGG + chr2_4:19010406-19010425 Msa0319390:CDS 50.0%
ATTATTAGTGGCGGTGGCTC+GGG - chr2_4:19010465-19010484 None:intergenic 50.0%
CATTATTAGTGGCGGTGGCT+CGG - chr2_4:19010466-19010485 None:intergenic 50.0%
GCGCCATTGCTACTATTCTC+TGG - chr2_4:19010641-19010660 None:intergenic 50.0%
GACACAAGTTTCGCCTGTCT+CGG + chr2_4:19010688-19010707 Msa0319390:CDS 50.0%
GATTGCATCACTAGCCCATC+TGG + chr2_4:19010809-19010828 Msa0319390:CDS 50.0%
!! CCAAGGAGTGTTTGGTTCCA+TGG - chr2_4:19010861-19010880 None:intergenic 50.0%
CCATGGAACCAAACACTCCT+TGG + chr2_4:19010858-19010877 Msa0319390:CDS 50.0%
GATGTGTCCCCTTGAATCCA+AGG - chr2_4:19010878-19010897 None:intergenic 50.0%
CTTCGTCCAGATGTTCGTCG+TGG + chr2_4:19009912-19009931 Msa0319390:CDS 55.0%
TGGCATCCAAAGGTAGCGCA+TGG - chr2_4:19010399-19010418 None:intergenic 55.0%
TGCGCTACCTTTGGATGCCA+AGG + chr2_4:19010399-19010418 Msa0319390:CDS 55.0%
TGGATGCGCTCCACTAACCT+TGG - chr2_4:19010419-19010438 None:intergenic 55.0%
CGAGCCACCGCCACTAATAA+TGG + chr2_4:19010464-19010483 Msa0319390:CDS 55.0%
GTGACCGCTGTTGTACCACT+TGG - chr2_4:19010494-19010513 None:intergenic 55.0%
GAATAGTAGCAATGGCGCCG+CGG + chr2_4:19010643-19010662 Msa0319390:CDS 55.0%
TGAATCCGATGATGCAGCCG+CGG - chr2_4:19010663-19010682 None:intergenic 55.0%
CTTCGTCCAGATGTTCGTCG+TGG + chr2_4:19009912-19009931 Msa0319390:CDS 55.0%
TGGCATCCAAAGGTAGCGCA+TGG - chr2_4:19010399-19010418 None:intergenic 55.0%
TGCGCTACCTTTGGATGCCA+AGG + chr2_4:19010399-19010418 Msa0319390:CDS 55.0%
TGGATGCGCTCCACTAACCT+TGG - chr2_4:19010419-19010438 None:intergenic 55.0%
CGAGCCACCGCCACTAATAA+TGG + chr2_4:19010464-19010483 Msa0319390:CDS 55.0%
GTGACCGCTGTTGTACCACT+TGG - chr2_4:19010494-19010513 None:intergenic 55.0%
GAATAGTAGCAATGGCGCCG+CGG + chr2_4:19010643-19010662 Msa0319390:CDS 55.0%
TGAATCCGATGATGCAGCCG+CGG - chr2_4:19010663-19010682 None:intergenic 55.0%
! ATTAGTGGCGGTGGCTCGGG+TGG - chr2_4:19010462-19010481 None:intergenic 65.0%
! ATTAGTGGCGGTGGCTCGGG+TGG - chr2_4:19010462-19010481 None:intergenic 65.0%
CGGAGGTGGATGCGGCAGCT+TGG - chr2_4:19010439-19010458 None:intergenic 70.0%
!! TCGGGTGGCGGAGGTGGATG+CGG - chr2_4:19010447-19010466 None:intergenic 70.0%
TGGCGCCGCGGCTGCATCAT+CGG + chr2_4:19010655-19010674 Msa0319390:CDS 70.0%
CGGAGGTGGATGCGGCAGCT+TGG - chr2_4:19010439-19010458 None:intergenic 70.0%
!! TCGGGTGGCGGAGGTGGATG+CGG - chr2_4:19010447-19010466 None:intergenic 70.0%
TGGCGCCGCGGCTGCATCAT+CGG + chr2_4:19010655-19010674 Msa0319390:CDS 70.0%
! AGTGGCGGTGGCTCGGGTGG+CGG - chr2_4:19010459-19010478 None:intergenic 75.0%
! AGTGGCGGTGGCTCGGGTGG+CGG - chr2_4:19010459-19010478 None:intergenic 75.0%
!!! GGTGGCTCGGGTGGCGGAGG+TGG - chr2_4:19010453-19010472 None:intergenic 80.0%
!!! GGTGGCTCGGGTGGCGGAGG+TGG - chr2_4:19010453-19010472 None:intergenic 80.0%
!! GGCGGTGGCTCGGGTGGCGG+AGG - chr2_4:19010456-19010475 None:intergenic 85.0%
!! GGCGGTGGCTCGGGTGGCGG+AGG - chr2_4:19010456-19010475 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 19008902 19011048 19008902 ID=Msa0319390;Name=Msa0319390
chr2_4 mRNA 19008902 19011048 19008902 ID=Msa0319390-mRNA-1;Parent=Msa0319390;Name=Msa0319390-mRNA-1;_AED=0.02;_eAED=0.02;_QI=197|1|1|1|1|1|3|93|328
chr2_4 exon 19008902 19009267 19008902 ID=Msa0319390-mRNA-1:exon:7088;Parent=Msa0319390-mRNA-1
chr2_4 exon 19009865 19009994 19009865 ID=Msa0319390-mRNA-1:exon:7089;Parent=Msa0319390-mRNA-1
chr2_4 exon 19010268 19011048 19010268 ID=Msa0319390-mRNA-1:exon:7090;Parent=Msa0319390-mRNA-1
chr2_4 five_prime_UTR 19008902 19009098 19008902 ID=Msa0319390-mRNA-1:five_prime_utr;Parent=Msa0319390-mRNA-1
chr2_4 CDS 19009099 19009267 19009099 ID=Msa0319390-mRNA-1:cds;Parent=Msa0319390-mRNA-1
chr2_4 CDS 19009865 19009994 19009865 ID=Msa0319390-mRNA-1:cds;Parent=Msa0319390-mRNA-1
chr2_4 CDS 19010268 19010955 19010268 ID=Msa0319390-mRNA-1:cds;Parent=Msa0319390-mRNA-1
chr2_4 three_prime_UTR 19010956 19011048 19010956 ID=Msa0319390-mRNA-1:three_prime_utr;Parent=Msa0319390-mRNA-1
Gene Sequence

>Msa0319390

ATGGAAGTGGAAGGAAGTGTAATAAGCAACTCGAACATCACCATGCTCCAAAGTGATGATGAGTTGGATCTTCGAAGAGGACCATGGACCGTCGATGAAGATCTTGCTCTCATCAATTACATTGCAAATCATGGTGAAGGTCGATGGAACACTCTTGCTCGTTCAGCTGGACTCAAACGAACTGGCAAGAGCTGTAGATTGAGATGGTTGAATTATCTTCGTCCAGATGTTCGTCGTGGTAACATCACACTTGAAGAACAACTTCTTATTCTTGAACTTCATAGTCGTTGGGGAAACCGATGGTCCAAAATTGCACAATACTTACCGGGAAGAACAGACAACGAGATCAAGAATTATTGGAGAACCCGTGTCCAAAAACATGCCAAACAACTCAAATGTGACGTAAACAGTAAGCAATTCAAAGATGCCATGCGCTACCTTTGGATGCCAAGGTTAGTGGAGCGCATCCAAGCTGCCGCATCCACCTCCGCCACCCGAGCCACCGCCACTAATAATGGTTCACCAAGTGGTACAACAGCGGTCACCACCAACAATACGACATATAACATAAACAACAATTTTGATGTTCATAGTAGCGTGAACATGTTAACCCCAACAATTATGAACACCAACAGTTTATGTGGTTCACATGTTACACAACGTTATACTCCAGAGAATAGTAGCAATGGCGCCGCGGCTGCATCATCGGATTCATTTGGGACACAAGTTTCGCCTGTCTCGGAATTGACTCAAGATTATTACAATGTCCAAGTTGGTAGTAACAACAATAATAACCCTAATTCTGATTATTACCAACAAGCTCAGCAATTTGGGTTTTTTGATTGCATCACTAGCCCATCTGGATTGTTCCCTCAAATGGATTTCAGTTCCATGGAACCAAACACTCCTTGGATTCAAGGGGACACATCTGACAATTTCTGGAATGTTGAAAACATGTTACTCTTTCAACATCTCAATGACATGTGA
Protein sequence

>Msa0319390

MEVEGSVISNSNITMLQSDDELDLRRGPWTVDEDLALINYIANHGEGRWNTLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAASTSATRATATNNGSPSGTTAVTTNNTTYNINNNFDVHSSVNMLTPTIMNTNSLCGSHVTQRYTPENSSNGAAAASSDSFGTQVSPVSELTQDYYNVQVGSNNNNNPNSDYYQQAQQFGFFDCITSPSGLFPQMDFSSMEPNTPWIQGDTSDNFWNVENMLLFQHLNDM*