AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0280520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0280520 MtrunA17_Chr2g0294411 100.000 522 0 0 1 522 74 595 0.0 1080
Msa0280520 MtrunA17_Chr3g0117861 30.958 449 290 9 13 455 99 533 4.82e-60 207
Msa0280520 MtrunA17_Chr4g0059521 31.944 432 280 7 29 456 66 487 3.46e-59 204
Msa0280520 MtrunA17_Chr2g0310091 30.357 448 287 9 14 454 100 529 3.98e-59 204
Msa0280520 MtrunA17_Chr6g0485301 32.096 458 273 15 15 455 57 493 4.13e-59 203
Msa0280520 MtrunA17_Chr8g0365221 31.195 452 285 9 13 455 98 532 6.79e-59 204
Msa0280520 MtrunA17_Chr8g0390651 30.000 450 291 9 16 455 59 494 3.12e-58 201
Msa0280520 MtrunA17_Chr3g0118121 30.152 461 303 8 4 455 36 486 1.02e-57 199
Msa0280520 MtrunA17_Chr4g0059221 30.330 455 285 11 13 455 101 535 1.15e-56 198
Msa0280520 MtrunA17_Chr3g0118081 29.325 474 313 9 4 465 66 529 1.34e-56 197
Msa0280520 MtrunA17_Chr8g0390631 31.529 425 258 12 46 455 79 485 3.30e-55 192
Msa0280520 MtrunA17_Chr6g0485311 29.399 449 295 10 13 454 57 490 1.10e-50 181
Msa0280520 MtrunA17_Chr8g0372381 27.778 468 308 8 14 467 8 459 1.04e-47 172
Msa0280520 MtrunA17_Chr4g0074171 28.850 461 290 13 9 455 49 485 1.31e-44 164
Msa0280520 MtrunA17_Chr1g0149961 28.633 461 291 13 9 455 49 485 1.73e-44 164
Msa0280520 MtrunA17_Chr2g0328781 26.829 451 299 10 23 462 35 465 2.84e-41 155
Msa0280520 MtrunA17_Chr8g0384741 26.176 489 334 11 19 503 73 538 3.90e-41 155
Msa0280520 MtrunA17_Chr3g0124811 25.390 449 303 9 33 466 36 467 3.01e-40 152
Msa0280520 MtrunA17_Chr1g0159811 24.413 426 291 9 13 431 21 422 3.10e-36 140
Msa0280520 MtrunA17_Chr4g0032441 28.434 415 270 11 37 441 27 424 1.90e-27 115
Msa0280520 MtrunA17_Chr2g0300801 24.146 439 309 8 14 443 58 481 4.02e-27 114
Msa0280520 MtrunA17_Chr4g0049641 24.936 389 281 7 29 415 95 474 6.54e-22 99.0
Msa0280520 MtrunA17_Chr2g0279751 24.235 392 280 9 29 415 68 447 1.57e-20 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0280520 AT3G66658.2 80.971 515 98 0 1 515 74 588 0.0 904
Msa0280520 AT3G66658.1 81.780 472 86 0 1 472 74 545 0.0 833
Msa0280520 AT3G48170.1 30.737 475 303 13 4 464 36 498 4.95e-61 209
Msa0280520 AT1G23800.1 31.637 452 283 9 13 455 91 525 7.65e-61 209
Msa0280520 AT1G74920.1 31.602 462 295 10 4 455 36 486 2.21e-60 207
Msa0280520 AT1G74920.2 32.192 438 281 9 23 455 55 481 3.78e-59 204
Msa0280520 AT3G48000.1 30.067 449 294 8 13 455 95 529 4.49e-57 199
Msa0280520 AT3G24503.1 29.398 432 286 8 29 455 75 492 3.06e-54 191
Msa0280520 AT1G79440.1 28.825 451 298 8 10 454 87 520 9.03e-53 187
Msa0280520 AT1G44170.1 25.605 496 332 12 14 494 11 484 9.74e-44 162
Msa0280520 AT1G44170.2 25.605 496 332 12 14 494 11 484 9.74e-44 162
Msa0280520 AT4G36250.1 26.196 439 297 8 13 441 6 427 5.33e-43 160
Msa0280520 AT2G24270.3 28.788 462 289 13 9 455 49 485 2.41e-42 158
Msa0280520 AT2G24270.1 28.788 462 289 13 9 455 49 485 2.41e-42 158
Msa0280520 AT2G24270.4 28.788 462 289 13 9 455 49 485 2.49e-42 158
Msa0280520 AT2G24270.2 28.788 462 289 13 9 455 89 525 5.38e-42 158
Msa0280520 AT1G44170.3 26.869 428 276 12 82 494 16 421 1.82e-40 151
Msa0280520 AT4G34240.1 25.740 439 297 9 9 441 76 491 1.87e-35 139
Msa0280520 AT4G34240.4 25.740 439 297 9 9 441 61 476 2.03e-35 139
Msa0280520 AT1G23800.2 30.743 296 185 6 13 299 91 375 2.03e-33 131
Msa0280520 AT4G34240.3 26.243 362 245 8 86 441 4 349 1.23e-31 126
Msa0280520 AT1G54100.2 23.235 439 311 10 13 441 56 478 1.31e-27 116
Msa0280520 AT1G54100.1 23.235 439 311 10 13 441 56 478 1.31e-27 116
Msa0280520 AT2G14170.2 23.923 418 293 9 7 415 36 437 8.91e-22 99.0
Msa0280520 AT2G14170.3 23.923 418 293 9 7 415 145 546 1.61e-21 98.6
Msa0280520 AT2G14170.1 23.923 418 293 9 7 415 145 546 1.71e-21 98.6
Msa0280520 AT4G34240.2 27.562 283 179 6 9 285 76 338 1.86e-18 87.8

Find 167 sgRNAs with CRISPR-Local

Find 484 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCTAATGACTCAAAATA+TGG 0.189862 2_3:-15295294 Msa0280520:CDS
ATCAACTGAATTCTCCAAAA+AGG 0.203381 2_3:+15300647 None:intergenic
GCCAGCCACCATGAAGTATT+TGG 0.227166 2_3:-15300553 Msa0280520:exon
TAAAGTTATCTTGCTATATA+AGG 0.230688 2_3:+15294198 None:intergenic
TGGAAATGGAATTGTGATTA+AGG 0.231209 2_3:-15297756 Msa0280520:intron
TTGCAGGGCCCACCACTTGC+TGG 0.231865 2_3:-15295722 Msa0280520:intron
ATGTCTTGGTGAGAGTTATT+TGG 0.257207 2_3:+15294055 None:intergenic
TTCAAATAATACGGGGCTTC+TGG 0.272448 2_3:-15294331 Msa0280520:three_prime_UTR
GTCAGGGCTGTTCTTCAGTC+AGG 0.294176 2_3:-15296645 Msa0280520:CDS
ATTAAGCTGTTTATCCAAAC+AGG 0.302017 2_3:-15300701 None:intergenic
TAGTATCCTGTGGCAGAAAA+TGG 0.307985 2_3:-15294533 Msa0280520:CDS
CAACATGTGAGAAGATAAAT+TGG 0.311009 2_3:-15298316 Msa0280520:CDS
AGAAAATGGATTTGAATTTC+AGG 0.311412 2_3:-15294519 Msa0280520:CDS
ATTGTTGCACGCGGAAGTTT+TGG 0.312303 2_3:-15295611 Msa0280520:CDS
GGCGTAAAACACAGTGGATT+TGG 0.317784 2_3:-15294743 Msa0280520:CDS
GAACATTCTGAAAAGCTTCT+AGG 0.321342 2_3:-15295668 Msa0280520:CDS
CCACCAAGCTCTAGTGTAAC+TGG 0.324494 2_3:+15296801 None:intergenic
CTCTACAGGTGGCAATAAAA+AGG 0.324927 2_3:-15294408 Msa0280520:CDS
CTTACCAGGTTTGGTGAAAC+AGG 0.328288 2_3:-15297318 Msa0280520:intron
CGCTATATGGTCTTAGCATA+TGG 0.333976 2_3:-15294481 Msa0280520:CDS
ACTTGCTGGGAAGTATGATA+TGG 0.337654 2_3:-15295708 Msa0280520:CDS
TCAGAGCTAAACTTCATTAT+CGG 0.341800 2_3:+15295333 None:intergenic
TGCTTATTGGATGATGATCC+TGG 0.354420 2_3:-15294252 Msa0280520:three_prime_UTR
GACCTTGTTGAGGTGATAAC+AGG 0.357161 2_3:-15297421 Msa0280520:CDS
AACCACAAACACTCAACTAA+TGG 0.358016 2_3:+15294029 None:intergenic
TCACTTGTTGAAGCGCTATA+TGG 0.360016 2_3:-15294494 Msa0280520:CDS
GCATTTGACTTATAGGCATT+TGG 0.361428 2_3:-15295366 Msa0280520:intron
TTTGGGATTTCTTCCTGCTT+TGG 0.373547 2_3:-15300535 Msa0280520:CDS
TCCTGCTTTGGCGCCGGATG+AGG 0.376504 2_3:-15300523 Msa0280520:intron
GGTATCTTTGTCTTAATGAA+TGG 0.385200 2_3:+15294650 None:intergenic
CCAGCCACCATGAAGTATTT+GGG 0.385798 2_3:-15300552 Msa0280520:exon
AGGATATCTTCACGTGATAC+TGG 0.386025 2_3:-15298377 Msa0280520:CDS
GTCCATTAGTTGAGTGTTTG+TGG 0.388835 2_3:-15294031 Msa0280520:three_prime_UTR
AAGGGGAACGGCGCAGCAAT+CGG 0.391886 2_3:-15300598 Msa0280520:five_prime_UTR
TGCAGGGCCCACCACTTGCT+GGG 0.393682 2_3:-15295721 Msa0280520:intron
CTATGGCAGCAAGGGCTGAT+TGG 0.398099 2_3:+15297455 None:intergenic
ATAGTCACATTCAAATAATA+CGG 0.401673 2_3:-15294340 Msa0280520:three_prime_UTR
AAACAGGGCCTTAGCGTTAG+TGG 0.407708 2_3:-15300685 Msa0280520:five_prime_UTR
GTAACTTTGCTGACAAAAGA+TGG 0.410535 2_3:+15296570 None:intergenic
TCAGAACATGCAAGTTGGTC+TGG 0.413232 2_3:-15297499 Msa0280520:CDS
AGACAGACCTGAATAGGCTT+TGG 0.415353 2_3:+15294629 None:intergenic
AAAGATACCAAAGCCTATTC+AGG 0.419183 2_3:-15294636 Msa0280520:intron
CGATCTAGATCCAACGTCCT+TGG 0.420655 2_3:-15293806 Msa0280520:three_prime_UTR
TGTCAAGGTTTCGCTGCATT+CGG 0.423622 2_3:-15293929 Msa0280520:three_prime_UTR
ATTTCTTCCTGCTTTGGCGC+CGG 0.425705 2_3:-15300529 Msa0280520:CDS
AAGAAATCCCAAATACTTCA+TGG 0.426395 2_3:+15300545 None:intergenic
GAGAAATGACTAATCATGTT+AGG 0.429516 2_3:-15294386 Msa0280520:exon
ACTAACGCTAAGGCCCTGTT+TGG 0.430821 2_3:+15300687 None:intergenic
GGACGATTCGGTGGTGTTGA+AGG 0.434305 2_3:-15294722 Msa0280520:CDS
AGTCAGTAGTTGAAGATAGA+TGG 0.436417 2_3:-15294676 Msa0280520:CDS
CTTGCATCAATTTCATTGAG+TGG 0.441509 2_3:+15295528 None:intergenic
TGCATCGAATTACATGTGTC+AGG 0.444184 2_3:-15295181 Msa0280520:intron
CACAGTGGATTTGGACGATT+CGG 0.447805 2_3:-15294734 Msa0280520:CDS
AACTTCATTATCGGCATGAT+AGG 0.455245 2_3:+15295342 None:intergenic
CTTCAACTACTGACTTTACA+AGG 0.459181 2_3:+15294684 None:intergenic
CCCAAATACTTCATGGTGGC+TGG 0.459911 2_3:+15300552 None:intergenic
AGGTTGCTCAAATTGCTGTC+AGG 0.459934 2_3:-15296662 Msa0280520:CDS
ATCACCTCAACAAGGTCCTC+TGG 0.461400 2_3:+15297427 None:intergenic
AAGGTCCTCTGGAGCTCCTA+TGG 0.461753 2_3:+15297438 None:intergenic
GGACGGTCCAATTTCAAGCT+TGG 0.461949 2_3:+15293828 None:intergenic
ATTGACGGGTCGCTTATCAT+AGG 0.465788 2_3:-15294097 Msa0280520:three_prime_UTR
TTGCTAATGACTCAAAATAT+GGG 0.466403 2_3:-15295293 Msa0280520:CDS
GATAAGCGACCCGTCAATCA+TGG 0.468281 2_3:+15294102 None:intergenic
AGGGGAACGGCGCAGCAATC+GGG 0.468490 2_3:-15300597 Msa0280520:five_prime_UTR
ATGGGATCGTTTGCAAGCAT+TGG 0.469554 2_3:-15294462 Msa0280520:CDS
CAAGGGCTGATTGGATGATC+CGG 0.470846 2_3:+15297464 None:intergenic
ATCACCTGGGGTTGGTAAGA+TGG 0.471554 2_3:-15297253 Msa0280520:intron
GATTGCTGCGCCGTTCCCCT+TGG 0.471929 2_3:+15300600 None:intergenic
TGCTGCGCCGTTCCCCTTGG+AGG 0.473549 2_3:+15300603 None:intergenic
GATAAATTGGCTATTGTCAG+AGG 0.478430 2_3:-15298303 Msa0280520:CDS
ACCTCATCCGGCGCCAAAGC+AGG 0.483725 2_3:+15300522 None:intergenic
TCAGGGCTGTTCTTCAGTCA+GGG 0.485988 2_3:-15296644 Msa0280520:CDS
AAGATGGATAAATGTTCCTA+TGG 0.486775 2_3:+15296586 None:intergenic
CTGGAGCTCCTATGGCAGCA+AGG 0.488303 2_3:+15297446 None:intergenic
TAGCTTCTCATATACATTGT+GGG 0.490188 2_3:-15295224 Msa0280520:CDS
CTTACTGAGCAGAACTCTAC+AGG 0.491012 2_3:-15294422 Msa0280520:CDS
AGGCTGGTTAATGTGGCAAC+TGG 0.492799 2_3:-15294366 Msa0280520:three_prime_UTR
TAGTCACATTCAAATAATAC+GGG 0.494409 2_3:-15294339 Msa0280520:three_prime_UTR
TGGAGCTCCTATGGCAGCAA+GGG 0.495946 2_3:+15297447 None:intergenic
ATAGGCTCACAAACCTCATC+CGG 0.501686 2_3:+15300510 None:intergenic
CAATCAGCCCTTGCTGCCAT+AGG 0.506439 2_3:-15297454 Msa0280520:CDS
AATCAGATTCTTTGCTGTCA+AGG 0.506715 2_3:-15293944 Msa0280520:three_prime_UTR
TTTGTTGGATCACCTGGGGT+TGG 0.506824 2_3:-15297261 Msa0280520:CDS
GAATGTGGCGAATTGATTGT+AGG 0.510017 2_3:-15293768 Msa0280520:three_prime_UTR
GATAAAATGCGATTCAATCA+CGG 0.514380 2_3:+15294135 None:intergenic
GCTATATGGTCTTAGCATAT+GGG 0.521718 2_3:-15294480 Msa0280520:CDS
ATAAAATGCGATTCAATCAC+GGG 0.524412 2_3:+15294136 None:intergenic
TCAACTAATGGACAATGTCT+TGG 0.531835 2_3:+15294041 None:intergenic
TAGTTAGCACAGGTAGCAGT+TGG 0.532842 2_3:+15294301 None:intergenic
AATGACTAATCATGTTAGGC+TGG 0.533313 2_3:-15294382 Msa0280520:exon
CTTGCTGGGAAGTATGATAT+GGG 0.534705 2_3:-15295707 Msa0280520:CDS
AGGGCTGTTCTTCAGTCAGG+GGG 0.535804 2_3:-15296642 Msa0280520:CDS
GAAGTTTAGCTCTGATGAAG+AGG 0.535852 2_3:-15295325 Msa0280520:CDS
GTAAATGATGCTTTAGACAA+AGG 0.536332 2_3:-15295641 Msa0280520:CDS
TTAGTACGCTCCATGATTGA+CGG 0.539799 2_3:-15294112 Msa0280520:three_prime_UTR
GATTTGCTAAACCACTGAGC+TGG 0.540588 2_3:+15293963 None:intergenic
TTTCCAGTCTCTGCCATTTG+GGG 0.540605 2_3:-15294765 Msa0280520:intron
CAAAGACTAGCTTCAAGCAA+AGG 0.543389 2_3:-15299815 Msa0280520:CDS
GGTTGCTCAAATTGCTGTCA+GGG 0.546154 2_3:-15296661 Msa0280520:CDS
ATTTGGTGATTTACATGAGT+AGG 0.546903 2_3:-15294004 Msa0280520:three_prime_UTR
TAGTACGCTCCATGATTGAC+GGG 0.555736 2_3:-15294111 Msa0280520:three_prime_UTR
TCACATTCACAATCACAGTA+GGG 0.555942 2_3:+15295552 None:intergenic
TCAGGTGCCTCCAAGGGGAA+CGG 0.558856 2_3:-15300610 Msa0280520:five_prime_UTR
TATATGAGAAGCTATCTCTC+TGG 0.559110 2_3:+15295233 None:intergenic
ATTCGGTCATCCGCGGTCGT+TGG 0.560351 2_3:-15293912 Msa0280520:three_prime_UTR
TGGTGAAACAGGAGAAGCAC+TGG 0.562872 2_3:-15297307 Msa0280520:CDS
AATGAAATTGATGCAAGAAG+AGG 0.563532 2_3:-15295522 Msa0280520:intron
ACATAGAGAATAGTTAGCAC+AGG 0.563797 2_3:+15294291 None:intergenic
TCATGTTAGGCTGGTTAATG+TGG 0.563807 2_3:-15294373 Msa0280520:three_prime_UTR
ATACCAGTTACACTAGAGCT+TGG 0.564045 2_3:-15296804 Msa0280520:CDS
AGAAGCACTGGTGTCTTCTG+TGG 0.565852 2_3:-15297295 Msa0280520:CDS
ATAGGCTCACTGTGAGATGT+TGG 0.566457 2_3:-15294079 Msa0280520:three_prime_UTR
CCAGTTACACTAGAGCTTGG+TGG 0.568636 2_3:-15296801 Msa0280520:CDS
AATGTTTGAAACCTGAGTAC+AGG 0.570318 2_3:-15298274 Msa0280520:intron
ACAATGGTAGATGCTTCTCT+AGG 0.573876 2_3:-15298350 Msa0280520:CDS
AGCTTCTCATATACATTGTG+GGG 0.574125 2_3:-15295223 Msa0280520:CDS
CAGGGCTGTTCTTCAGTCAG+GGG 0.574303 2_3:-15296643 Msa0280520:CDS
CGTTGGATCAAAGATCGGTC+CGG 0.575710 2_3:-15293895 Msa0280520:three_prime_UTR
TCATACTTCCCAGCAAGTGG+TGG 0.583531 2_3:+15295713 None:intergenic
ATTACAAACCACTAACGCTA+AGG 0.586451 2_3:+15300677 None:intergenic
GCTTATTGGATGATGATCCT+GGG 0.589534 2_3:-15294251 Msa0280520:three_prime_UTR
TCATCTGTCCTAGTATCCTG+TGG 0.591006 2_3:-15294543 Msa0280520:intron
CAAGGACGTTGGATCTAGAT+CGG 0.592716 2_3:+15293807 None:intergenic
TTCCAGTCTCTGCCATTTGG+GGG 0.595438 2_3:-15294764 Msa0280520:intron
TTATTGGGGCCATTGTGTCG+TGG 0.599690 2_3:-15297829 Msa0280520:CDS
TTAAGCTGTTTATCCAAACA+GGG 0.602723 2_3:-15300700 None:intergenic
ATAGCTTCTCATATACATTG+TGG 0.604160 2_3:-15295225 Msa0280520:CDS
TGAGACAGGTACCTGTACTC+AGG 0.604776 2_3:+15298263 None:intergenic
TCACACAATCAGCACATCCA+AGG 0.607712 2_3:+15293789 None:intergenic
GACGTTGGATCTAGATCGGA+CGG 0.607784 2_3:+15293811 None:intergenic
AATGTGGCGAATTGATTGTA+GGG 0.609833 2_3:-15293767 Msa0280520:three_prime_UTR
AGATATCAGAACATGCAAGT+TGG 0.612985 2_3:-15297504 Msa0280520:CDS
AATGGCCCCAATAACGCCAA+GGG 0.615997 2_3:+15297838 None:intergenic
CAATGGCCCCAATAACGCCA+AGG 0.623770 2_3:+15297837 None:intergenic
TGCTGCCATAGGAGCTCCAG+AGG 0.624048 2_3:-15297443 Msa0280520:CDS
ATCAGCACATCCAAGGACGT+TGG 0.625024 2_3:+15293796 None:intergenic
CATACCATCTTACCAACCCC+AGG 0.625175 2_3:+15297249 None:intergenic
AGTGGATTTGGACGATTCGG+TGG 0.625255 2_3:-15294731 Msa0280520:CDS
AGCTCCAGAGGACCTTGTTG+AGG 0.625959 2_3:-15297431 Msa0280520:CDS
ATATCATACTTCCCAGCAAG+TGG 0.627095 2_3:+15295710 None:intergenic
TGTTTGTGAAGACGTAGATG+TGG 0.627212 2_3:-15296763 Msa0280520:CDS
TTCACATTCACAATCACAGT+AGG 0.630142 2_3:+15295551 None:intergenic
TGTTCATCAGATAACTACCC+AGG 0.633150 2_3:+15294234 None:intergenic
TCGCTGCATTCGGTCATCCG+CGG 0.633868 2_3:-15293919 Msa0280520:three_prime_UTR
GCGGTCGTTGGATCAAAGAT+CGG 0.639119 2_3:-15293900 Msa0280520:three_prime_UTR
CACATTCACAATCACAGTAG+GGG 0.639355 2_3:+15295553 None:intergenic
GGGCTGTTCTTCAGTCAGGG+GGG 0.644321 2_3:-15296641 Msa0280520:CDS
CATACTTCCCAGCAAGTGGT+GGG 0.644953 2_3:+15295714 None:intergenic
GGGATAGTTCCACGACACAA+TGG 0.651870 2_3:+15297820 None:intergenic
ATGAAGCATTGATCTTCCAG+AGG 0.652577 2_3:+15297886 None:intergenic
GCTTCATAAGAGAGCCAGAG+TGG 0.653340 2_3:-15297870 Msa0280520:CDS
TCTTAATAAATCCAGCTCAG+TGG 0.655616 2_3:-15293974 Msa0280520:three_prime_UTR
ACATTCACAATCACAGTAGG+GGG 0.657269 2_3:+15295554 None:intergenic
TTTATTCAGGTGCCTCCAAG+GGG 0.657310 2_3:-15300615 Msa0280520:five_prime_UTR
ATAAATTGGCTATTGTCAGA+GGG 0.660827 2_3:-15298302 Msa0280520:CDS
ACCTTGTTGAGGTGATAACA+GGG 0.667865 2_3:-15297420 Msa0280520:intron
CAGTAGTTGAAGATAGATGG+TGG 0.670419 2_3:-15294673 Msa0280520:CDS
ATGTGCTGATTGTGTGAATG+TGG 0.671644 2_3:-15293783 Msa0280520:three_prime_UTR
ATGGCCCCAATAACGCCAAG+GGG 0.691262 2_3:+15297839 None:intergenic
ACTGAGCAGAACTCTACAGG+TGG 0.704579 2_3:-15294419 Msa0280520:CDS
GGAGCTGAAATTGTTGCACG+CGG 0.704741 2_3:-15295620 Msa0280520:CDS
GATCTTTGATCCAACGACCG+CGG 0.705515 2_3:+15293902 None:intergenic
ACCCTGTTATCACCTCAACA+AGG 0.707587 2_3:+15297419 None:intergenic
AAATCCCAAATACTTCATGG+TGG 0.723996 2_3:+15300548 None:intergenic
TAAAATGCGATTCAATCACG+GGG 0.729476 2_3:+15294137 None:intergenic
AGTCACATTCAAATAATACG+GGG 0.736954 2_3:-15294338 Msa0280520:three_prime_UTR
TGGCCCCAATAACGCCAAGG+GGG 0.740602 2_3:+15297840 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATAAAAATAAAAATA+AGG + chr2_3:15295815-15295834 None:intergenic 0.0%
!! TTCAGTATAAATATAAATAA+GGG + chr2_3:15298188-15298207 None:intergenic 10.0%
!!! ATATTTTTCCTTATTTAATT+AGG + chr2_3:15298219-15298238 None:intergenic 10.0%
!! TTTGTTCTTATTCATATTTA+TGG + chr2_3:15294388-15294407 None:intergenic 15.0%
!! AAATTAAGAAGGAAAATTAT+TGG + chr2_3:15295012-15295031 None:intergenic 15.0%
!! TATTGAAATATGTTATAAGT+AGG + chr2_3:15295369-15295388 None:intergenic 15.0%
!! TTAAATGTTAATTTCAACAT+TGG - chr2_3:15295622-15295641 Msa0280520:CDS 15.0%
!! AAAAAAGAAAAAAAAACTGT+AGG + chr2_3:15296366-15296385 None:intergenic 15.0%
!!! TTTGAAATTAAAGGAAAAAA+GGG + chr2_3:15297000-15297019 None:intergenic 15.0%
!! GTTCAGTATAAATATAAATA+AGG + chr2_3:15298189-15298208 None:intergenic 15.0%
!!! ACTATATTTTCACTTATTAA+TGG - chr2_3:15298557-15298576 Msa0280520:intron 15.0%
!!! TCTTAATACTAAATATTTTG+CGG + chr2_3:15298597-15298616 None:intergenic 15.0%
!! ATCATATTCCAAATATTTCA+TGG + chr2_3:15293953-15293972 None:intergenic 20.0%
!! AAAAAATACTCCATTCAAAT+AGG + chr2_3:15294026-15294045 None:intergenic 20.0%
!!! TTTTAGAAGTAATATAACAG+AGG + chr2_3:15294104-15294123 None:intergenic 20.0%
!! AGAGACAAAAAAATATCAAA+GGG - chr2_3:15294280-15294299 Msa0280520:three_prime_UTR 20.0%
!! AAATTAGTACAAGTTAACTA+TGG + chr2_3:15294479-15294498 None:intergenic 20.0%
!! AAAAATGTTAATTTCCACAT+TGG + chr2_3:15294887-15294906 None:intergenic 20.0%
!! TGGTAAAACTAAAATAAAGA+GGG + chr2_3:15294992-15295011 None:intergenic 20.0%
!! TTGGTAAAACTAAAATAAAG+AGG + chr2_3:15294993-15295012 None:intergenic 20.0%
!! AATTAGATATATTAGCAGAT+AGG - chr2_3:15295414-15295433 Msa0280520:intron 20.0%
!!! AAAATCACTCATTTTAAACT+TGG - chr2_3:15295738-15295757 Msa0280520:intron 20.0%
!!! AAATCACTCATTTTAAACTT+GGG - chr2_3:15295739-15295758 Msa0280520:intron 20.0%
!!! TTAATTGTTAGTCTGAAAAA+TGG - chr2_3:15295907-15295926 Msa0280520:intron 20.0%
!! TTAATGTATTGCAAAACAAA+AGG + chr2_3:15296455-15296474 None:intergenic 20.0%
!! TATCTACTTTCATAAAAACA+TGG + chr2_3:15296708-15296727 None:intergenic 20.0%
!!! TTTTTAGTATCAAGTGTTAA+TGG + chr2_3:15296768-15296787 None:intergenic 20.0%
!!! CTTTGAAATTAAAGGAAAAA+AGG + chr2_3:15297001-15297020 None:intergenic 20.0%
!!! TGTAACAGATTTTATGATTT+TGG + chr2_3:15297828-15297847 None:intergenic 20.0%
!!! TATTATGAAATTTTGCAAGA+CGG - chr2_3:15298018-15298037 Msa0280520:intron 20.0%
!! CTTCTAATCCTAATTAAATA+AGG - chr2_3:15298208-15298227 Msa0280520:intron 20.0%
!! TCAATGTTAATATAATCTGT+GGG + chr2_3:15298510-15298529 None:intergenic 20.0%
!! TTCAATGTTAATATAATCTG+TGG + chr2_3:15298511-15298530 None:intergenic 20.0%
!! TATATTAACATTGAAAACTG+AGG - chr2_3:15298516-15298535 Msa0280520:intron 20.0%
!!! AGACATTTTCAAATAATAGT+TGG + chr2_3:15298943-15298962 None:intergenic 20.0%
!! AGAGAAACAACTAAAATATT+AGG - chr2_3:15299333-15299352 Msa0280520:intron 20.0%
!! AGTTTGTATGATATAATGAA+AGG + chr2_3:15299776-15299795 None:intergenic 20.0%
!! ATAGTCACATTCAAATAATA+CGG - chr2_3:15300033-15300052 Msa0280520:intron 20.0%
!!! TAAAGTTATCTTGCTATATA+AGG + chr2_3:15300178-15300197 None:intergenic 20.0%
!! ATTAAAAACAACAATGAATC+CGG + chr2_3:15300500-15300519 None:intergenic 20.0%
!!! TTGTAATTTTTTCCCCTTTT+TGG - chr2_3:15293712-15293731 Msa0280520:three_prime_UTR 25.0%
!! TTGTCTCTGTATAAATTTTG+AGG + chr2_3:15294268-15294287 None:intergenic 25.0%
! CAGAGACAAAAAAATATCAA+AGG - chr2_3:15294279-15294298 Msa0280520:three_prime_UTR 25.0%
! ATGAATGAAATTAGTCAAAC+TGG + chr2_3:15294442-15294461 None:intergenic 25.0%
! AGTTTGACTAATTTCATTCA+TGG - chr2_3:15294441-15294460 Msa0280520:CDS 25.0%
! GTTTGACTAATTTCATTCAT+GGG - chr2_3:15294442-15294461 Msa0280520:CDS 25.0%
!! ACTTGTACTAATTTGAGATA+TGG - chr2_3:15294485-15294504 Msa0280520:CDS 25.0%
!! TACTAATTTGAGATATGGAT+AGG - chr2_3:15294490-15294509 Msa0280520:CDS 25.0%
!!! CAGGTGTTAGTTTTATTTTT+AGG - chr2_3:15294678-15294697 Msa0280520:CDS 25.0%
!! TTTAGGCTTAATTTCACTTT+TGG - chr2_3:15294695-15294714 Msa0280520:CDS 25.0%
!! ATCACTCATTTTAAACTTGA+GGG + chr2_3:15294755-15294774 None:intergenic 25.0%
!! AATCACTCATTTTAAACTTG+AGG + chr2_3:15295740-15295759 None:intergenic 25.0%
! AACTAGAGTGAAAATTAAGA+AGG + chr2_3:15295023-15295042 None:intergenic 25.0%
! AGTATGATTGAGTATTAGTT+TGG + chr2_3:15295137-15295156 None:intergenic 25.0%
! GATAATGCATAATATATGCA+AGG - chr2_3:15295241-15295260 Msa0280520:CDS 25.0%
!! ATGCGTGTTTTATCTTTTTT+TGG + chr2_3:15295292-15295311 None:intergenic 25.0%
! AATATATCACAATGTACTAG+TGG - chr2_3:15295385-15295404 Msa0280520:intron 25.0%
!!! TTAGCCACGTTATTATTTTT+TGG - chr2_3:15295675-15295694 Msa0280520:CDS 25.0%
! TTGACCAAAAAATAATAACG+TGG + chr2_3:15295682-15295701 None:intergenic 25.0%
!!! TTTTTTGGTCAAAATATGCA+TGG - chr2_3:15295690-15295709 Msa0280520:CDS 25.0%
!!! TTTTTGGTCAAAATATGCAT+GGG - chr2_3:15295691-15295710 Msa0280520:CDS 25.0%
!! AATCACTCATTTTAAACTTG+GGG - chr2_3:15295740-15295759 Msa0280520:intron 25.0%
!! AATAAGGCTTAATTGCATTT+TGG + chr2_3:15295799-15295818 None:intergenic 25.0%
! GGGTTAAAAATATTATGGAA+GGG + chr2_3:15296576-15296595 None:intergenic 25.0%
! AGGGTTAAAAATATTATGGA+AGG + chr2_3:15296577-15296596 None:intergenic 25.0%
! GCATAGGGTTAAAAATATTA+TGG + chr2_3:15296581-15296600 None:intergenic 25.0%
!!! ATGATGAACAATTTTAGAGA+AGG + chr2_3:15296673-15296692 None:intergenic 25.0%
!!! CTCTAAAATTGTTCATCATA+TGG - chr2_3:15296674-15296693 Msa0280520:intron 25.0%
! AAAATTGTTCATCATATGGA+TGG - chr2_3:15296678-15296697 Msa0280520:intron 25.0%
! ACTGAAAAATATAAACACAG+AGG + chr2_3:15296820-15296839 None:intergenic 25.0%
! AAATTAAAGGAAAAAAGGGA+GGG + chr2_3:15296996-15297015 None:intergenic 25.0%
!!! AGACATGACTTTGAAATTAA+AGG + chr2_3:15297009-15297028 None:intergenic 25.0%
!! AAGAATTTTCCTAGAATACT+TGG - chr2_3:15297271-15297290 Msa0280520:CDS 25.0%
!! TTCTTTTGTGAGTACAAAAT+GGG + chr2_3:15297332-15297351 None:intergenic 25.0%
!! TTTCTTTTGTGAGTACAAAA+TGG + chr2_3:15297333-15297352 None:intergenic 25.0%
!! AAGAATAGAAGAAGCATATA+CGG + chr2_3:15297456-15297475 None:intergenic 25.0%
! TTCAACAACAAATGCATAAT+GGG + chr2_3:15297655-15297674 None:intergenic 25.0%
! ATTCAACAACAAATGCATAA+TGG + chr2_3:15297656-15297675 None:intergenic 25.0%
!! TAGACTGAAGTGTTAATATA+TGG - chr2_3:15298365-15298384 Msa0280520:CDS 25.0%
! ATAATAGATATACTGATGAG+AGG - chr2_3:15298452-15298471 Msa0280520:intron 25.0%
!!! TAACCAAAAGCTTTAAAGAA+CGG + chr2_3:15298623-15298642 None:intergenic 25.0%
! TTGCTAATGACTCAAAATAT+GGG - chr2_3:15299080-15299099 Msa0280520:intron 25.0%
!!! ACATTTTGTTTTAGTACTGT+CGG - chr2_3:15299517-15299536 Msa0280520:intron 25.0%
! GCTTCAATGGAAATTTAAAA+AGG + chr2_3:15299571-15299590 None:intergenic 25.0%
!! AGAAAATGGATTTGAATTTC+AGG - chr2_3:15299854-15299873 Msa0280520:CDS 25.0%
! TAGTCACATTCAAATAATAC+GGG - chr2_3:15300034-15300053 Msa0280520:intron 25.0%
! AATAAGCACAACAAAAATGA+CGG + chr2_3:15300109-15300128 None:intergenic 25.0%
! ATAAAAACCAAGCTTGAAAT+TGG - chr2_3:15300538-15300557 Msa0280520:CDS 25.0%
TCAACTGAATTCTCCAAAAA+GGG + chr2_3:15293728-15293747 None:intergenic 30.0%
ATCAACTGAATTCTCCAAAA+AGG + chr2_3:15293729-15293748 None:intergenic 30.0%
!!! TGATCGATTGCTTTTTATTC+AGG - chr2_3:15293745-15293764 Msa0280520:three_prime_UTR 30.0%
AAGAAATCCCAAATACTTCA+TGG + chr2_3:15293831-15293850 None:intergenic 30.0%
TTAACTAACTGAAAAGCAAG+CGG - chr2_3:15293927-15293946 Msa0280520:three_prime_UTR 30.0%
ATAGTATAGCTAAGATAGCA+AGG - chr2_3:15293975-15293994 Msa0280520:three_prime_UTR 30.0%
TCAAAGGGAATAAAACTAGT+TGG - chr2_3:15294295-15294314 Msa0280520:three_prime_UTR 30.0%
CAAAGGGAATAAAACTAGTT+GGG - chr2_3:15294296-15294315 Msa0280520:three_prime_UTR 30.0%
TCAGTAGTATACGTAAAAAC+TGG + chr2_3:15294586-15294605 None:intergenic 30.0%
ATTGCACAATTGTGAAACTT+GGG + chr2_3:15294724-15294743 None:intergenic 30.0%
AATTGCACAATTGTGAAACT+TGG + chr2_3:15294725-15294744 None:intergenic 30.0%
! TCACTCATTTTAAACTTGAG+GGG + chr2_3:15294754-15294773 None:intergenic 30.0%
!! TTTTTGGTCAAAATGTGCAT+GGG + chr2_3:15294818-15294837 None:intergenic 30.0%
!!! TTTTTTGGTCAAAATGTGCA+TGG + chr2_3:15294819-15294838 None:intergenic 30.0%
! TTGACCAAAAAATGATGATG+TGG - chr2_3:15294827-15294846 Msa0280520:intron 30.0%
!!! TTAGCCACATCATCATTTTT+TGG + chr2_3:15294834-15294853 None:intergenic 30.0%
AGTTGAGACTTTATGGTTAT+TGG + chr2_3:15295080-15295099 None:intergenic 30.0%
!! ACGATTAAGTTGAGACTTTA+TGG + chr2_3:15295087-15295106 None:intergenic 30.0%
!! TAGTTTGGTTCACACATTTT+CGG + chr2_3:15295122-15295141 None:intergenic 30.0%
!!! CGTGTTTTATCTTTTTTTGG+TGG + chr2_3:15295289-15295308 None:intergenic 30.0%
TAGATATATTAGCAGATAGG+AGG - chr2_3:15295417-15295436 Msa0280520:intron 30.0%
! TTTTGGTCAAAATATGCATG+GGG - chr2_3:15295692-15295711 Msa0280520:CDS 30.0%
! ATCACTCATTTTAAACTTGG+GGG - chr2_3:15295741-15295760 Msa0280520:intron 30.0%
! TCTGAAAAATGGATTTGAAC+TGG - chr2_3:15295918-15295937 Msa0280520:intron 30.0%
! CTGAAAAATGGATTTGAACT+GGG - chr2_3:15295919-15295938 Msa0280520:intron 30.0%
!! CTAACTTGTGTCCTTTTATT+AGG - chr2_3:15295976-15295995 Msa0280520:intron 30.0%
CGTGAAGATATCCTAATAAA+AGG + chr2_3:15295990-15296009 None:intergenic 30.0%
CAACATGTGAGAAGATAAAT+TGG - chr2_3:15296057-15296076 Msa0280520:intron 30.0%
ATAAATTGGCTATTGTCAGA+GGG - chr2_3:15296071-15296090 Msa0280520:intron 30.0%
AACACAAAAAAGATTGAGAC+AGG + chr2_3:15296127-15296146 None:intergenic 30.0%
AGAGAAAAGAGTCAATTACT+GGG + chr2_3:15296248-15296267 None:intergenic 30.0%
ATGTATTGCAAAACAAAAGG+TGG + chr2_3:15296452-15296471 None:intergenic 30.0%
TGGAAATGGAATTGTGATTA+AGG - chr2_3:15296617-15296636 Msa0280520:CDS 30.0%
AGTAGATATTGTTAACTGTC+AGG - chr2_3:15296720-15296739 Msa0280520:intron 30.0%
AAATATAAACACAGAGGAGT+AGG + chr2_3:15296814-15296833 None:intergenic 30.0%
TATCTACAATCAGAATCACA+AGG + chr2_3:15296854-15296873 None:intergenic 30.0%
GAAATTAAAGGAAAAAAGGG+AGG + chr2_3:15296997-15297016 None:intergenic 30.0%
TCTGCATCTATAATCTCAAT+TGG - chr2_3:15297026-15297045 Msa0280520:intron 30.0%
!!! GTGGATAAAGTCATTTTTGT+TGG - chr2_3:15297097-15297116 Msa0280520:intron 30.0%
AAACATTGACCAAGTATTCT+AGG + chr2_3:15297283-15297302 None:intergenic 30.0%
! TCAATGTTTAGAGTAGCATT+TGG - chr2_3:15297294-15297313 Msa0280520:CDS 30.0%
! TCTTTTGTGAGTACAAAATG+GGG + chr2_3:15297331-15297350 None:intergenic 30.0%
TCAACAACAAATGCATAATG+GGG + chr2_3:15297654-15297673 None:intergenic 30.0%
AAGATGGATAAATGTTCCTA+TGG + chr2_3:15297790-15297809 None:intergenic 30.0%
ATGTTACAAATGAAAGGTCA+TGG + chr2_3:15297878-15297897 None:intergenic 30.0%
AGACAGATGTTACAAATGAA+AGG + chr2_3:15297884-15297903 None:intergenic 30.0%
AATTTCTTTCCAAGTCAACA+TGG - chr2_3:15297909-15297928 Msa0280520:intron 30.0%
ATTTCTTTCCAAGTCAACAT+GGG - chr2_3:15297910-15297929 Msa0280520:intron 30.0%
CAGAAATGCAACAAAAATAG+AGG + chr2_3:15298071-15298090 None:intergenic 30.0%
! TCGTTTTCTATTTTCCTTAG+AGG - chr2_3:15298097-15298116 Msa0280520:intron 30.0%
! TTTTCTATTTTCCTTAGAGG+AGG - chr2_3:15298100-15298119 Msa0280520:intron 30.0%
! TTTCTATTTTCCTTAGAGGA+GGG - chr2_3:15298101-15298120 Msa0280520:intron 30.0%
! CATAGATTATCTCTGAAGAT+TGG + chr2_3:15298267-15298286 None:intergenic 30.0%
AATAACTAATGCTGAGAAGT+TGG - chr2_3:15298416-15298435 Msa0280520:intron 30.0%
ATAACTAATGCTGAGAAGTT+GGG - chr2_3:15298417-15298436 Msa0280520:intron 30.0%
TTCACTTATTAATGGAGCAT+AGG - chr2_3:15298565-15298584 Msa0280520:intron 30.0%
TCACTTATTAATGGAGCATA+GGG - chr2_3:15298566-15298585 Msa0280520:intron 30.0%
TTTGGTTAATGATTTCTTGC+AGG - chr2_3:15298635-15298654 Msa0280520:intron 30.0%
TTGGTTAATGATTTCTTGCA+GGG - chr2_3:15298636-15298655 Msa0280520:intron 30.0%
! GTAAATGATGCTTTAGACAA+AGG - chr2_3:15298732-15298751 Msa0280520:intron 30.0%
AATGAAATTGATGCAAGAAG+AGG - chr2_3:15298851-15298870 Msa0280520:intron 30.0%
ATATCCAATGCTTGTAGTAA+AGG + chr2_3:15298884-15298903 None:intergenic 30.0%
TCAGAGCTAAACTTCATTAT+CGG + chr2_3:15299043-15299062 None:intergenic 30.0%
CTTGCTAATGACTCAAAATA+TGG - chr2_3:15299079-15299098 Msa0280520:intron 30.0%
ATAGCTTCTCATATACATTG+TGG - chr2_3:15299148-15299167 Msa0280520:intron 30.0%
TAGCTTCTCATATACATTGT+GGG - chr2_3:15299149-15299168 Msa0280520:intron 30.0%
TTTCTCTTGTTCTTTAGCAA+TGG + chr2_3:15299320-15299339 None:intergenic 30.0%
CAACTAAAATATTAGGAGCA+TGG - chr2_3:15299340-15299359 Msa0280520:intron 30.0%
! AAATTTAAAAAGGTACACGC+AGG + chr2_3:15299561-15299580 None:intergenic 30.0%
GGTATCTTTGTCTTAATGAA+TGG + chr2_3:15299726-15299745 None:intergenic 30.0%
!!! TTTTTTAGACAGACCTGAAT+AGG + chr2_3:15299753-15299772 None:intergenic 30.0%
GAGAAATGACTAATCATGTT+AGG - chr2_3:15299987-15300006 Msa0280520:intron 30.0%
AGTCACATTCAAATAATACG+GGG - chr2_3:15300035-15300054 Msa0280520:intron 30.0%
ATAAGCACAACAAAAATGAC+GGG + chr2_3:15300108-15300127 None:intergenic 30.0%
!!! GTCATTTTTGTTGTGCTTAT+TGG - chr2_3:15300108-15300127 Msa0280520:intron 30.0%
ATAAAATGCGATTCAATCAC+GGG + chr2_3:15300240-15300259 None:intergenic 30.0%
GATAAAATGCGATTCAATCA+CGG + chr2_3:15300241-15300260 None:intergenic 30.0%
!!! TGAGTGTTTGTGGTTTTATT+TGG - chr2_3:15300352-15300371 Msa0280520:intron 30.0%
! ATTTGGTGATTTACATGAGT+AGG - chr2_3:15300369-15300388 Msa0280520:intron 30.0%
ATTACAAACCACTAACGCTA+AGG + chr2_3:15293699-15293718 None:intergenic 35.0%
CAACTGAATTCTCCAAAAAG+GGG + chr2_3:15293727-15293746 None:intergenic 35.0%
AAATCCCAAATACTTCATGG+TGG + chr2_3:15293828-15293847 None:intergenic 35.0%
TCTTGAGAAGCAATAAGCAT+AGG + chr2_3:15293884-15293903 None:intergenic 35.0%
ATGCACAATGCCTATTTGAA+TGG - chr2_3:15294013-15294032 Msa0280520:three_prime_UTR 35.0%
TCTTCTAATCATAACTCACC+AGG - chr2_3:15294075-15294094 Msa0280520:three_prime_UTR 35.0%
ATCCTATCATATATCTCACC+GGG + chr2_3:15294146-15294165 None:intergenic 35.0%
CATCCTATCATATATCTCAC+CGG + chr2_3:15294147-15294166 None:intergenic 35.0%
TTAATGACTATGCGCTAAGA+GGG + chr2_3:15294190-15294209 None:intergenic 35.0%
TTTAATGACTATGCGCTAAG+AGG + chr2_3:15294191-15294210 None:intergenic 35.0%
! TTTGAGATATGGATAGGTCA+AGG - chr2_3:15294496-15294515 Msa0280520:CDS 35.0%
AGGAGCGAATTGAAAAAGTA+CGG - chr2_3:15294516-15294535 Msa0280520:CDS 35.0%
TGATCTTCAAACTATGACCA+TGG + chr2_3:15294660-15294679 None:intergenic 35.0%
ATGGTCATAGTTTGAAGATC+AGG - chr2_3:15294659-15294678 Msa0280520:CDS 35.0%
TTGCACAATTGTGAAACTTG+GGG + chr2_3:15294723-15294742 None:intergenic 35.0%
! TTTTGGTCAAAATGTGCATG+GGG + chr2_3:15294817-15294836 None:intergenic 35.0%
TGTGGCTAATTTCAATGACA+TGG - chr2_3:15294845-15294864 Msa0280520:intron 35.0%
! TTATCAACGCTGCATTTTTG+TGG + chr2_3:15295179-15295198 None:intergenic 35.0%
!!! ATCTTTTTTTGGTGGTGTCT+GGG + chr2_3:15295281-15295300 None:intergenic 35.0%
!!! TATCTTTTTTTGGTGGTGTC+TGG + chr2_3:15295282-15295301 None:intergenic 35.0%
GTGCTATCTATGGAAGAAAT+GGG - chr2_3:15295463-15295482 Msa0280520:intron 35.0%
TGCTATCTATGGAAGAAATG+GGG - chr2_3:15295464-15295483 Msa0280520:intron 35.0%
TTTGGTCAAAATATGCATGG+GGG - chr2_3:15295693-15295712 Msa0280520:CDS 35.0%
! GTTTCACAATTGTGCGATTT+TGG + chr2_3:15295768-15295787 None:intergenic 35.0%
TCGCACAATTGTGAAACTTT+AGG - chr2_3:15295771-15295790 Msa0280520:intron 35.0%
CGCACAATTGTGAAACTTTA+GGG - chr2_3:15295772-15295791 Msa0280520:intron 35.0%
GCACAATTGTGAAACTTTAG+GGG - chr2_3:15295773-15295792 Msa0280520:intron 35.0%
ACGTGATACTGGAAAAACAA+TGG - chr2_3:15296007-15296026 Msa0280520:intron 35.0%
GATAAATTGGCTATTGTCAG+AGG - chr2_3:15296070-15296089 Msa0280520:intron 35.0%
! AATGTTTGAAACCTGAGTAC+AGG - chr2_3:15296099-15296118 Msa0280520:intron 35.0%
CAGAGAAAAGAGTCAATTAC+TGG + chr2_3:15296249-15296268 None:intergenic 35.0%
TTAAAAACATGCAGATCCTC+TGG - chr2_3:15296471-15296490 Msa0280520:intron 35.0%
AAAAAACTGCTGCTAGCATA+GGG + chr2_3:15296596-15296615 None:intergenic 35.0%
ATGGAACATTGTTAACTGTC+AGG + chr2_3:15296749-15296768 None:intergenic 35.0%
AGATATCAGAACATGCAAGT+TGG - chr2_3:15296869-15296888 Msa0280520:intron 35.0%
!! TCATTTTTGTTGGATCACCT+GGG - chr2_3:15297107-15297126 Msa0280520:intron 35.0%
GTTCCTTAAGCCAATCAAAT+TGG - chr2_3:15297147-15297166 Msa0280520:intron 35.0%
!! GAACCAATTTGATTGGCTTA+AGG + chr2_3:15297153-15297172 None:intergenic 35.0%
ACAGGATGAACCAATTTGAT+TGG + chr2_3:15297160-15297179 None:intergenic 35.0%
!!! ACTCACTGATTTTGCTTAAC+GGG + chr2_3:15297403-15297422 None:intergenic 35.0%
!!! CACTCACTGATTTTGCTTAA+CGG + chr2_3:15297404-15297423 None:intergenic 35.0%
AATCAGTGAGTGAGATAGTT+TGG - chr2_3:15297412-15297431 Msa0280520:intron 35.0%
ATCAGTGAGTGAGATAGTTT+GGG - chr2_3:15297413-15297432 Msa0280520:intron 35.0%
! CTGAACGATTTTATGTCCAT+AGG - chr2_3:15297771-15297790 Msa0280520:CDS 35.0%
GTAACTTTGCTGACAAAAGA+TGG + chr2_3:15297806-15297825 None:intergenic 35.0%
ATTCTGTAAGAATCAAGTGC+AGG + chr2_3:15297952-15297971 None:intergenic 35.0%
GAACCAATGTAAAGTTAAGC+TGG + chr2_3:15297993-15298012 None:intergenic 35.0%
TAGATATACTGATGAGAGGA+AGG - chr2_3:15298456-15298475 Msa0280520:intron 35.0%
AGATATACTGATGAGAGGAA+GGG - chr2_3:15298457-15298476 Msa0280520:intron 35.0%
CACTTATTAATGGAGCATAG+GGG - chr2_3:15298567-15298586 Msa0280520:intron 35.0%
!!! AGTCCGTTCTTTAAAGCTTT+TGG - chr2_3:15298617-15298636 Msa0280520:intron 35.0%
! GAACATTCTGAAAAGCTTCT+AGG - chr2_3:15298705-15298724 Msa0280520:intron 35.0%
TCACATTCACAATCACAGTA+GGG + chr2_3:15298824-15298843 None:intergenic 35.0%
TTCACATTCACAATCACAGT+AGG + chr2_3:15298825-15298844 None:intergenic 35.0%
CTTGCATCAATTTCATTGAG+TGG + chr2_3:15298848-15298867 None:intergenic 35.0%
CAAACCTTTACTACAAGCAT+TGG - chr2_3:15298877-15298896 Msa0280520:intron 35.0%
TGAATCTAGTAAGCAGTTGT+TGG + chr2_3:15298982-15299001 None:intergenic 35.0%
! CATCTGTGCATTTGACTTAT+AGG - chr2_3:15299000-15299019 Msa0280520:intron 35.0%
! GCATTTGACTTATAGGCATT+TGG - chr2_3:15299007-15299026 Msa0280520:intron 35.0%
AACTTCATTATCGGCATGAT+AGG + chr2_3:15299034-15299053 None:intergenic 35.0%
TATATGAGAAGCTATCTCTC+TGG + chr2_3:15299143-15299162 None:intergenic 35.0%
AGCTTCTCATATACATTGTG+GGG - chr2_3:15299150-15299169 Msa0280520:intron 35.0%
TTGTGAAATTCAGACTAGAC+TGG - chr2_3:15299363-15299382 Msa0280520:intron 35.0%
CTGTGAACAAAACGTTAGAT+TGG + chr2_3:15299389-15299408 None:intergenic 35.0%
ATTCGAACCATGATTCTATC+CGG + chr2_3:15299432-15299451 None:intergenic 35.0%
AATCATGGTTCGAATGCAAT+TGG - chr2_3:15299437-15299456 Msa0280520:intron 35.0%
AGAATGCAACTTTGCTTCAA+TGG + chr2_3:15299584-15299603 None:intergenic 35.0%
!! CTTCAACTACTGACTTTACA+AGG + chr2_3:15299692-15299711 None:intergenic 35.0%
AGTCAGTAGTTGAAGATAGA+TGG - chr2_3:15299697-15299716 Msa0280520:intron 35.0%
AAAGATACCAAAGCCTATTC+AGG - chr2_3:15299737-15299756 Msa0280520:intron 35.0%
CATACAAACTACACTGTTAG+TGG - chr2_3:15299786-15299805 Msa0280520:CDS 35.0%
! GCTATATGGTCTTAGCATAT+GGG - chr2_3:15299893-15299912 Msa0280520:intron 35.0%
AATGACTAATCATGTTAGGC+TGG - chr2_3:15299991-15300010 Msa0280520:intron 35.0%
ACATAGAGAATAGTTAGCAC+AGG + chr2_3:15300085-15300104 None:intergenic 35.0%
TAAAATGCGATTCAATCACG+GGG + chr2_3:15300239-15300258 None:intergenic 35.0%
ATGTCTTGGTGAGAGTTATT+TGG + chr2_3:15300321-15300340 None:intergenic 35.0%
! TCAACTAATGGACAATGTCT+TGG + chr2_3:15300335-15300354 None:intergenic 35.0%
AACCACAAACACTCAACTAA+TGG + chr2_3:15300347-15300366 None:intergenic 35.0%
TCTTAATAAATCCAGCTCAG+TGG - chr2_3:15300399-15300418 Msa0280520:intron 35.0%
! AATCAGATTCTTTGCTGTCA+AGG - chr2_3:15300429-15300448 Msa0280520:intron 35.0%
AATGTGGCGAATTGATTGTA+GGG - chr2_3:15300606-15300625 Msa0280520:five_prime_UTR 35.0%
! TTTTTATTCAGGTGCCTCCA+AGG - chr2_3:15293756-15293775 Msa0280520:three_prime_UTR 40.0%
! TTTTATTCAGGTGCCTCCAA+GGG - chr2_3:15293757-15293776 Msa0280520:three_prime_UTR 40.0%
! TTTGGGATTTCTTCCTGCTT+TGG - chr2_3:15293838-15293857 Msa0280520:three_prime_UTR 40.0%
!! GTAATATAACAGAGGCATCC+TGG + chr2_3:15294096-15294115 None:intergenic 40.0%
TATCCCATCAGATATCTACC+CGG - chr2_3:15294125-15294144 Msa0280520:three_prime_UTR 40.0%
TACCCGGTGAGATATATGAT+AGG - chr2_3:15294141-15294160 Msa0280520:three_prime_UTR 40.0%
ATTTATGGCTTCTTGAGTGC+TGG + chr2_3:15294373-15294392 None:intergenic 40.0%
! GCGAATTGAAAAAGTACGGA+AGG - chr2_3:15294520-15294539 Msa0280520:CDS 40.0%
! TACGGAAGGCACAAAAAATG+TGG - chr2_3:15294534-15294553 Msa0280520:intron 40.0%
! ACGGAAGGCACAAAAAATGT+GGG - chr2_3:15294535-15294554 Msa0280520:intron 40.0%
!! CAAAGACTAGCTTCAAGCAA+AGG - chr2_3:15294558-15294577 Msa0280520:intron 40.0%
GTAAGACCACTTCAATTCCA+TGG - chr2_3:15294640-15294659 Msa0280520:CDS 40.0%
CTATGACCATGGAATTGAAG+TGG + chr2_3:15294649-15294668 None:intergenic 40.0%
TGCACAATTGTGAAACTTGG+GGG + chr2_3:15294722-15294741 None:intergenic 40.0%
! CTCATTTTAAACTTGAGGGG+CGG + chr2_3:15294751-15294770 None:intergenic 40.0%
TGCAAAAGGAGGCAAACTTA+AGG + chr2_3:15294785-15294804 None:intergenic 40.0%
AAACTTGAAAGAAGGGAAGG+GGG + chr2_3:15295053-15295072 None:intergenic 40.0%
CAAACTTGAAAGAAGGGAAG+GGG + chr2_3:15295054-15295073 None:intergenic 40.0%
CCAAACTTGAAAGAAGGGAA+GGG + chr2_3:15295055-15295074 None:intergenic 40.0%
TCCAAACTTGAAAGAAGGGA+AGG + chr2_3:15295056-15295075 None:intergenic 40.0%
TGGCTCCAAACTTGAAAGAA+GGG + chr2_3:15295060-15295079 None:intergenic 40.0%
TTGGCTCCAAACTTGAAAGA+AGG + chr2_3:15295061-15295080 None:intergenic 40.0%
!! TTTGGTTCACACATTTTCGG+CGG + chr2_3:15295119-15295138 None:intergenic 40.0%
TGCATAATATATGCAAGGCC+TGG - chr2_3:15295246-15295265 Msa0280520:CDS 40.0%
GCATAATATATGCAAGGCCT+GGG - chr2_3:15295247-15295266 Msa0280520:CDS 40.0%
CATAATATATGCAAGGCCTG+GGG - chr2_3:15295248-15295267 Msa0280520:CDS 40.0%
ATATTAGCAGATAGGAGGCT+TGG - chr2_3:15295422-15295441 Msa0280520:intron 40.0%
! GGTGCTATCTATGGAAGAAA+TGG - chr2_3:15295462-15295481 Msa0280520:intron 40.0%
TTTCAACATTGGCGAACACA+TGG - chr2_3:15295633-15295652 Msa0280520:CDS 40.0%
ATTTGTGAGTTGTGACATCC+TGG - chr2_3:15295859-15295878 Msa0280520:intron 40.0%
AGGATATCTTCACGTGATAC+TGG - chr2_3:15295996-15296015 Msa0280520:intron 40.0%
ACAATGGTAGATGCTTCTCT+AGG - chr2_3:15296023-15296042 Msa0280520:intron 40.0%
GAGTCAATTACTGGGATTGT+GGG + chr2_3:15296240-15296259 None:intergenic 40.0%
AGAGTCAATTACTGGGATTG+TGG + chr2_3:15296241-15296260 None:intergenic 40.0%
!! ATGAAGCATTGATCTTCCAG+AGG + chr2_3:15296490-15296509 None:intergenic 40.0%
GAAAAAACTGCTGCTAGCAT+AGG + chr2_3:15296597-15296616 None:intergenic 40.0%
!!! ATGCTAGCAGCAGTTTTTTC+TGG - chr2_3:15296597-15296616 Msa0280520:CDS 40.0%
!!! GCAGCAGTTTTTTCTGGAAA+TGG - chr2_3:15296603-15296622 Msa0280520:CDS 40.0%
ACCTTGTTGAGGTGATAACA+GGG - chr2_3:15296953-15296972 Msa0280520:intron 40.0%
! AAAAGGGAGGGTGCAAAATA+AGG + chr2_3:15296984-15297003 None:intergenic 40.0%
TCAATTGGACCTTTCTTACC+AGG - chr2_3:15297041-15297060 Msa0280520:intron 40.0%
TTCACCAAACCTGGTAAGAA+AGG + chr2_3:15297053-15297072 None:intergenic 40.0%
!!! GTCATTTTTGTTGGATCACC+TGG - chr2_3:15297106-15297125 Msa0280520:intron 40.0%
! CATTTTTGTTGGATCACCTG+GGG - chr2_3:15297108-15297127 Msa0280520:intron 40.0%
TGATGCAATTCACAGAAGAC+AGG + chr2_3:15297183-15297202 None:intergenic 40.0%
TCAGTGAGTGAGATAGTTTG+GGG - chr2_3:15297414-15297433 Msa0280520:intron 40.0%
ACTCATTGCATGGAACATCT+CGG + chr2_3:15297480-15297499 None:intergenic 40.0%
GCAAAAGACTACTCATTGCA+TGG + chr2_3:15297490-15297509 None:intergenic 40.0%
ATACCAGTTACACTAGAGCT+TGG - chr2_3:15297569-15297588 Msa0280520:intron 40.0%
TGTTTGTGAAGACGTAGATG+TGG - chr2_3:15297610-15297629 Msa0280520:intron 40.0%
!! ATGGGGAAGGTATTCATACA+TGG + chr2_3:15297637-15297656 None:intergenic 40.0%
! CAACAAATGCATAATGGGGA+AGG + chr2_3:15297650-15297669 None:intergenic 40.0%
CTCACTAATCTGCTGAATGT+AGG - chr2_3:15297691-15297710 Msa0280520:intron 40.0%
CCAATGTAAAGTTAAGCTGG+TGG + chr2_3:15297990-15298009 None:intergenic 40.0%
CCACCAGCTTAACTTTACAT+TGG - chr2_3:15297987-15298006 Msa0280520:intron 40.0%
ATATCATACTTCCCAGCAAG+TGG + chr2_3:15298666-15298685 None:intergenic 40.0%
! ACTTGCTGGGAAGTATGATA+TGG - chr2_3:15298665-15298684 Msa0280520:intron 40.0%
! CTTGCTGGGAAGTATGATAT+GGG - chr2_3:15298666-15298685 Msa0280520:intron 40.0%
ACATTCACAATCACAGTAGG+GGG + chr2_3:15298822-15298841 None:intergenic 40.0%
CACATTCACAATCACAGTAG+GGG + chr2_3:15298823-15298842 None:intergenic 40.0%
GTTGTTGGAGCATACAAGAT+AGG + chr2_3:15298967-15298986 None:intergenic 40.0%
!! GAAGTTTAGCTCTGATGAAG+AGG - chr2_3:15299048-15299067 Msa0280520:intron 40.0%
TGCATCGAATTACATGTGTC+AGG - chr2_3:15299192-15299211 Msa0280520:intron 40.0%
CATCATATCACGCAACTACT+AGG + chr2_3:15299278-15299297 None:intergenic 40.0%
! CCTATAGAACTAGCTTGAAC+CGG - chr2_3:15299410-15299429 Msa0280520:intron 40.0%
! TCGAATGCAATTGGTTCAGT+CGG - chr2_3:15299446-15299465 Msa0280520:intron 40.0%
! TTTTTCCAGTCTCTGCCATT+TGG - chr2_3:15299606-15299625 Msa0280520:intron 40.0%
!! TTTTCCAGTCTCTGCCATTT+GGG - chr2_3:15299607-15299626 Msa0280520:intron 40.0%
CAGTAGTTGAAGATAGATGG+TGG - chr2_3:15299700-15299719 Msa0280520:intron 40.0%
! ATTTTCTGCCACAGGATACT+AGG + chr2_3:15299841-15299860 None:intergenic 40.0%
TAGTATCCTGTGGCAGAAAA+TGG - chr2_3:15299840-15299859 Msa0280520:CDS 40.0%
! TCAAATCCATTTTCTGCCAC+AGG + chr2_3:15299849-15299868 None:intergenic 40.0%
! TCACTTGTTGAAGCGCTATA+TGG - chr2_3:15299879-15299898 Msa0280520:intron 40.0%
! CGCTATATGGTCTTAGCATA+TGG - chr2_3:15299892-15299911 Msa0280520:intron 40.0%
CTCTACAGGTGGCAATAAAA+AGG - chr2_3:15299965-15299984 Msa0280520:intron 40.0%
! TCATGTTAGGCTGGTTAATG+TGG - chr2_3:15300000-15300019 Msa0280520:intron 40.0%
TTCAAATAATACGGGGCTTC+TGG - chr2_3:15300042-15300061 Msa0280520:intron 40.0%
TGCTTATTGGATGATGATCC+TGG - chr2_3:15300121-15300140 Msa0280520:intron 40.0%
GCTTATTGGATGATGATCCT+GGG - chr2_3:15300122-15300141 Msa0280520:intron 40.0%
TGTTCATCAGATAACTACCC+AGG + chr2_3:15300142-15300161 None:intergenic 40.0%
TTAGTACGCTCCATGATTGA+CGG - chr2_3:15300261-15300280 Msa0280520:intron 40.0%
GTCCATTAGTTGAGTGTTTG+TGG - chr2_3:15300342-15300361 Msa0280520:intron 40.0%
!! ATGTGCTGATTGTGTGAATG+TGG - chr2_3:15300590-15300609 Msa0280520:five_prime_UTR 40.0%
GAATGTGGCGAATTGATTGT+AGG - chr2_3:15300605-15300624 Msa0280520:five_prime_UTR 40.0%
TTTATTCAGGTGCCTCCAAG+GGG - chr2_3:15293758-15293777 Msa0280520:three_prime_UTR 45.0%
! CCAGCCACCATGAAGTATTT+GGG - chr2_3:15293821-15293840 Msa0280520:three_prime_UTR 45.0%
ATAGGCTCACAAACCTCATC+CGG + chr2_3:15293866-15293885 None:intergenic 45.0%
GCAAGCGGCCATGAAATATT+TGG - chr2_3:15293942-15293961 Msa0280520:three_prime_UTR 45.0%
TCACCGGGTAGATATCTGAT+GGG + chr2_3:15294131-15294150 None:intergenic 45.0%
! GAGTAGCTCGTGAGTTTGTT+TGG - chr2_3:15294321-15294340 Msa0280520:three_prime_UTR 45.0%
GCACAATTGTGAAACTTGGG+GGG + chr2_3:15294721-15294740 None:intergenic 45.0%
! GGACTAGTAAGTGCAAAAGG+AGG + chr2_3:15294796-15294815 None:intergenic 45.0%
! TGGGGACTAGTAAGTGCAAA+AGG + chr2_3:15294799-15294818 None:intergenic 45.0%
TATCTCTGTGTTCGCCAATG+TGG - chr2_3:15294870-15294889 Msa0280520:intron 45.0%
!! CCCTTCCCTTCTTTCAAGTT+TGG - chr2_3:15295052-15295071 Msa0280520:intron 45.0%
TACCAACTGAGCTAAGCTCA+CGG + chr2_3:15295219-15295238 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG - chr2_3:15295219-15295238 Msa0280520:CDS 45.0%
! ATATGCATGGGGGACTAGTA+AGG - chr2_3:15295703-15295722 Msa0280520:CDS 45.0%
! TATGCATGGGGGACTAGTAA+GGG - chr2_3:15295704-15295723 Msa0280520:CDS 45.0%
! GGGGACTAGTAAGGGTAAAA+GGG - chr2_3:15295712-15295731 Msa0280520:CDS 45.0%
! GGGACTAGTAAGGGTAAAAG+GGG - chr2_3:15295713-15295732 Msa0280520:CDS 45.0%
CTAAAAACTGCATGTTCGCC+AGG + chr2_3:15295880-15295899 None:intergenic 45.0%
AATTACTGGGATTGTGGGAG+GGG + chr2_3:15296235-15296254 None:intergenic 45.0%
CAATTACTGGGATTGTGGGA+GGG + chr2_3:15296236-15296255 None:intergenic 45.0%
TCAATTACTGGGATTGTGGG+AGG + chr2_3:15296237-15296256 None:intergenic 45.0%
!! TCAGAACATGCAAGTTGGTC+TGG - chr2_3:15296874-15296893 Msa0280520:intron 45.0%
! GGTCTGGATGCTTTTACTTC+CGG - chr2_3:15296890-15296909 Msa0280520:intron 45.0%
GACCTTGTTGAGGTGATAAC+AGG - chr2_3:15296952-15296971 Msa0280520:intron 45.0%
ACCCTGTTATCACCTCAACA+AGG + chr2_3:15296957-15296976 None:intergenic 45.0%
TGGACCTTTCTTACCAGGTT+TGG - chr2_3:15297046-15297065 Msa0280520:intron 45.0%
!! CTTACCAGGTTTGGTGAAAC+AGG - chr2_3:15297055-15297074 Msa0280520:intron 45.0%
TTCTCCTGTTTCACCAAACC+TGG + chr2_3:15297062-15297081 None:intergenic 45.0%
CAATTCACAGAAGACAGGAC+AGG + chr2_3:15297178-15297197 None:intergenic 45.0%
AGGTTGCTCAAATTGCTGTC+AGG - chr2_3:15297711-15297730 Msa0280520:intron 45.0%
GGTTGCTCAAATTGCTGTCA+GGG - chr2_3:15297712-15297731 Msa0280520:intron 45.0%
! ACAAGAAGCCCATGTTGACT+TGG + chr2_3:15297921-15297940 None:intergenic 45.0%
TCTTTCTCTTCCCTCCTCTA+AGG + chr2_3:15298114-15298133 None:intergenic 45.0%
! ATTGTTGCACGCGGAAGTTT+TGG - chr2_3:15298762-15298781 Msa0280520:intron 45.0%
!!! CGCGGAAGTTTTGGACATAT+AGG - chr2_3:15298771-15298790 Msa0280520:intron 45.0%
! TTTCAGGTGACACGCAAACA+TGG + chr2_3:15299251-15299270 None:intergenic 45.0%
ATGTTTGCGTGTCACCTGAA+AGG - chr2_3:15299250-15299269 Msa0280520:intron 45.0%
TGTTTGCGTGTCACCTGAAA+GGG - chr2_3:15299251-15299270 Msa0280520:intron 45.0%
!! CCGGTTCAAGCTAGTTCTAT+AGG + chr2_3:15299413-15299432 None:intergenic 45.0%
GCTTGAACCGGATAGAATCA+TGG - chr2_3:15299422-15299441 Msa0280520:intron 45.0%
! AGGTACACGCAGGTTGAATT+AGG + chr2_3:15299551-15299570 None:intergenic 45.0%
! TTTCCAGTCTCTGCCATTTG+GGG - chr2_3:15299608-15299627 Msa0280520:intron 45.0%
! GGCGTAAAACACAGTGGATT+TGG - chr2_3:15299630-15299649 Msa0280520:intron 45.0%
! CACAGTGGATTTGGACGATT+CGG - chr2_3:15299639-15299658 Msa0280520:intron 45.0%
AGACAGACCTGAATAGGCTT+TGG + chr2_3:15299747-15299766 None:intergenic 45.0%
TCATCTGTCCTAGTATCCTG+TGG - chr2_3:15299830-15299849 Msa0280520:CDS 45.0%
ATGGGATCGTTTGCAAGCAT+TGG - chr2_3:15299911-15299930 Msa0280520:intron 45.0%
CTTACTGAGCAGAACTCTAC+AGG - chr2_3:15299951-15299970 Msa0280520:intron 45.0%
TAGTTAGCACAGGTAGCAGT+TGG + chr2_3:15300075-15300094 None:intergenic 45.0%
TAGTACGCTCCATGATTGAC+GGG - chr2_3:15300262-15300281 Msa0280520:intron 45.0%
! ATTGACGGGTCGCTTATCAT+AGG - chr2_3:15300276-15300295 Msa0280520:intron 45.0%
ATAGGCTCACTGTGAGATGT+TGG - chr2_3:15300294-15300313 Msa0280520:intron 45.0%
!! GATTTGCTAAACCACTGAGC+TGG + chr2_3:15300413-15300432 None:intergenic 45.0%
TGTCAAGGTTTCGCTGCATT+CGG - chr2_3:15300444-15300463 Msa0280520:intron 45.0%
CAAGGACGTTGGATCTAGAT+CGG + chr2_3:15300569-15300588 None:intergenic 45.0%
TCACACAATCAGCACATCCA+AGG + chr2_3:15300587-15300606 None:intergenic 45.0%
!! AAACATTAAATAAATAAAAA+AGG + chr2_3:15294216-15294235 None:intergenic 5.0%
!! AAAAAAAAATTTAAAAAAAG+AGG - chr2_3:15294909-15294928 Msa0280520:intron 5.0%
ACTAACGCTAAGGCCCTGTT+TGG + chr2_3:15293689-15293708 None:intergenic 50.0%
AAACAGGGCCTTAGCGTTAG+TGG - chr2_3:15293688-15293707 Msa0280520:three_prime_UTR 50.0%
! GCCAGCCACCATGAAGTATT+TGG - chr2_3:15293820-15293839 Msa0280520:three_prime_UTR 50.0%
CCCAAATACTTCATGGTGGC+TGG + chr2_3:15293824-15293843 None:intergenic 50.0%
ATTTCTTCCTGCTTTGGCGC+CGG - chr2_3:15293844-15293863 Msa0280520:three_prime_UTR 50.0%
CTCACCGGGTAGATATCTGA+TGG + chr2_3:15294132-15294151 None:intergenic 50.0%
ACCAACTGAGCTAAGCTCAC+GGG + chr2_3:15295218-15295237 None:intergenic 50.0%
GTGAGCTTAGCTCAGTTGGT+AGG - chr2_3:15295218-15295237 Msa0280520:CDS 50.0%
! TAGCAGATAGGAGGCTTGGT+TGG - chr2_3:15295426-15295445 Msa0280520:intron 50.0%
! AGAAATGGGGTGCTCTGTAG+AGG - chr2_3:15295477-15295496 Msa0280520:intron 50.0%
CGTGGCTAATTGTCATGACG+TGG + chr2_3:15295664-15295683 None:intergenic 50.0%
! GGGGGACTAGTAAGGGTAAA+AGG - chr2_3:15295711-15295730 Msa0280520:CDS 50.0%
TGAGACAGGTACCTGTACTC+AGG + chr2_3:15296113-15296132 None:intergenic 50.0%
ATTACTGGGATTGTGGGAGG+GGG + chr2_3:15296234-15296253 None:intergenic 50.0%
GCTTCATAAGAGAGCCAGAG+TGG - chr2_3:15296503-15296522 Msa0280520:intron 50.0%
AAGGGGGTGAAATTCCACTC+TGG + chr2_3:15296520-15296539 None:intergenic 50.0%
AGAGTGGAATTTCACCCCCT+TGG - chr2_3:15296519-15296538 Msa0280520:intron 50.0%
TTTCACCCCCTTGGCGTTAT+TGG - chr2_3:15296528-15296547 Msa0280520:intron 50.0%
TTCACCCCCTTGGCGTTATT+GGG - chr2_3:15296529-15296548 Msa0280520:intron 50.0%
AATGGCCCCAATAACGCCAA+GGG + chr2_3:15296538-15296557 None:intergenic 50.0%
TTATTGGGGCCATTGTGTCG+TGG - chr2_3:15296544-15296563 Msa0280520:intron 50.0%
GGGATAGTTCCACGACACAA+TGG + chr2_3:15296556-15296575 None:intergenic 50.0%
CAAGGGCTGATTGGATGATC+CGG + chr2_3:15296912-15296931 None:intergenic 50.0%
ATCACCTCAACAAGGTCCTC+TGG + chr2_3:15296949-15296968 None:intergenic 50.0%
! TGGTGAAACAGGAGAAGCAC+TGG - chr2_3:15297066-15297085 Msa0280520:intron 50.0%
!! AGAAGCACTGGTGTCTTCTG+TGG - chr2_3:15297078-15297097 Msa0280520:intron 50.0%
TTTGTTGGATCACCTGGGGT+TGG - chr2_3:15297112-15297131 Msa0280520:intron 50.0%
!! ATCACCTGGGGTTGGTAAGA+TGG - chr2_3:15297120-15297139 Msa0280520:intron 50.0%
CATACCATCTTACCAACCCC+AGG + chr2_3:15297127-15297146 None:intergenic 50.0%
!! CTGGGGTTGGTAAGATGGTA+TGG - chr2_3:15297125-15297144 Msa0280520:intron 50.0%
! CCACCAAGCTCTAGTGTAAC+TGG + chr2_3:15297575-15297594 None:intergenic 50.0%
CCAGTTACACTAGAGCTTGG+TGG - chr2_3:15297572-15297591 Msa0280520:intron 50.0%
TCAGGGCTGTTCTTCAGTCA+GGG - chr2_3:15297729-15297748 Msa0280520:intron 50.0%
CATACTTCCCAGCAAGTGGT+GGG + chr2_3:15298662-15298681 None:intergenic 50.0%
TCATACTTCCCAGCAAGTGG+TGG + chr2_3:15298663-15298682 None:intergenic 50.0%
GGAGCTGAAATTGTTGCACG+CGG - chr2_3:15298753-15298772 Msa0280520:intron 50.0%
!!! CTCAGCTGTGCTGTTTTCTC+AGG - chr2_3:15299103-15299122 Msa0280520:intron 50.0%
GCAACTACTAGGTCCCTTTC+AGG + chr2_3:15299267-15299286 None:intergenic 50.0%
! TTCCAGTCTCTGCCATTTGG+GGG - chr2_3:15299609-15299628 Msa0280520:intron 50.0%
! CTGTGTTTTACGCCCCCAAA+TGG + chr2_3:15299624-15299643 None:intergenic 50.0%
! TTTGGGGGCGTAAAACACAG+TGG - chr2_3:15299624-15299643 Msa0280520:intron 50.0%
! AGTGGATTTGGACGATTCGG+TGG - chr2_3:15299642-15299661 Msa0280520:intron 50.0%
ACTGAGCAGAACTCTACAGG+TGG - chr2_3:15299954-15299973 Msa0280520:intron 50.0%
! AGGCTGGTTAATGTGGCAAC+TGG - chr2_3:15300007-15300026 Msa0280520:intron 50.0%
GATAAGCGACCCGTCAATCA+TGG + chr2_3:15300274-15300293 None:intergenic 50.0%
GATCTTTGATCCAACGACCG+CGG + chr2_3:15300474-15300493 None:intergenic 50.0%
GCGGTCGTTGGATCAAAGAT+CGG - chr2_3:15300473-15300492 Msa0280520:intron 50.0%
CGTTGGATCAAAGATCGGTC+CGG - chr2_3:15300478-15300497 Msa0280520:intron 50.0%
GGACGGTCCAATTTCAAGCT+TGG + chr2_3:15300548-15300567 None:intergenic 50.0%
GACGTTGGATCTAGATCGGA+CGG + chr2_3:15300565-15300584 None:intergenic 50.0%
CGATCTAGATCCAACGTCCT+TGG - chr2_3:15300567-15300586 Msa0280520:five_prime_UTR 50.0%
ATCAGCACATCCAAGGACGT+TGG + chr2_3:15300580-15300599 None:intergenic 50.0%
CAACTGAGCTAAGCTCACGG+GGG + chr2_3:15295216-15295235 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+GGG + chr2_3:15295217-15295236 None:intergenic 55.0%
! CAGATAGGAGGCTTGGTTGG+AGG - chr2_3:15295429-15295448 Msa0280520:intron 55.0%
! ATAGGAGGCTTGGTTGGAGG+TGG - chr2_3:15295432-15295451 Msa0280520:intron 55.0%
! TAGGAGGCTTGGTTGGAGGT+GGG - chr2_3:15295433-15295452 Msa0280520:intron 55.0%
TCACCCCCTTGGCGTTATTG+GGG - chr2_3:15296530-15296549 Msa0280520:intron 55.0%
ATGGCCCCAATAACGCCAAG+GGG + chr2_3:15296537-15296556 None:intergenic 55.0%
CAATGGCCCCAATAACGCCA+AGG + chr2_3:15296539-15296558 None:intergenic 55.0%
CTATGGCAGCAAGGGCTGAT+TGG + chr2_3:15296921-15296940 None:intergenic 55.0%
CAATCAGCCCTTGCTGCCAT+AGG - chr2_3:15296919-15296938 Msa0280520:intron 55.0%
TGGAGCTCCTATGGCAGCAA+GGG + chr2_3:15296929-15296948 None:intergenic 55.0%
!! AAGGTCCTCTGGAGCTCCTA+TGG + chr2_3:15296938-15296957 None:intergenic 55.0%
AGCTCCAGAGGACCTTGTTG+AGG - chr2_3:15296942-15296961 Msa0280520:intron 55.0%
GGCGTCGCTGTTTAGACTAG+AGG + chr2_3:15297382-15297401 None:intergenic 55.0%
GTCAGGGCTGTTCTTCAGTC+AGG - chr2_3:15297728-15297747 Msa0280520:intron 55.0%
CAGGGCTGTTCTTCAGTCAG+GGG - chr2_3:15297730-15297749 Msa0280520:intron 55.0%
AGGGCTGTTCTTCAGTCAGG+GGG - chr2_3:15297731-15297750 Msa0280520:intron 55.0%
!! GGACGATTCGGTGGTGTTGA+AGG - chr2_3:15299651-15299670 Msa0280520:intron 55.0%
TCAGGTGCCTCCAAGGGGAA+CGG - chr2_3:15293763-15293782 Msa0280520:three_prime_UTR 60.0%
AAGGGGAACGGCGCAGCAAT+CGG - chr2_3:15293775-15293794 Msa0280520:three_prime_UTR 60.0%
CCCCGTGAGCTTAGCTCAGT+TGG - chr2_3:15295214-15295233 Msa0280520:CDS 60.0%
! GTGTCTGGGATTCGAACCCC+AGG + chr2_3:15295267-15295286 None:intergenic 60.0%
GCTTGGTTGGAGGTGGGACT+GGG - chr2_3:15295439-15295458 Msa0280520:intron 60.0%
CTTGGTTGGAGGTGGGACTG+GGG - chr2_3:15295440-15295459 Msa0280520:intron 60.0%
TTGGTTGGAGGTGGGACTGG+GGG - chr2_3:15295441-15295460 Msa0280520:intron 60.0%
!! GGGACTGGGGGTGCTATCTA+TGG - chr2_3:15295453-15295472 Msa0280520:intron 60.0%
TGGCCCCAATAACGCCAAGG+GGG + chr2_3:15296536-15296555 None:intergenic 60.0%
CTGGAGCTCCTATGGCAGCA+AGG + chr2_3:15296930-15296949 None:intergenic 60.0%
TGCTGCCATAGGAGCTCCAG+AGG - chr2_3:15296930-15296949 Msa0280520:intron 60.0%
GGGCTGTTCTTCAGTCAGGG+GGG - chr2_3:15297732-15297751 Msa0280520:intron 60.0%
TCGCTGCATTCGGTCATCCG+CGG - chr2_3:15300454-15300473 Msa0280520:intron 60.0%
ATTCGGTCATCCGCGGTCGT+TGG - chr2_3:15300461-15300480 Msa0280520:intron 60.0%
GATTGCTGCGCCGTTCCCCT+TGG + chr2_3:15293776-15293795 None:intergenic 65.0%
AGGGGAACGGCGCAGCAATC+GGG - chr2_3:15293776-15293795 Msa0280520:three_prime_UTR 65.0%
! TCCTGCTTTGGCGCCGGATG+AGG - chr2_3:15293850-15293869 Msa0280520:three_prime_UTR 65.0%
ACCTCATCCGGCGCCAAAGC+AGG + chr2_3:15293854-15293873 None:intergenic 65.0%
! GGCTTGGTTGGAGGTGGGAC+TGG - chr2_3:15295438-15295457 Msa0280520:intron 65.0%
TCAGGGGGGCAGAACTGTGC+TGG - chr2_3:15297746-15297765 Msa0280520:intron 65.0%
TTGCAGGGCCCACCACTTGC+TGG - chr2_3:15298651-15298670 Msa0280520:intron 65.0%
TGCAGGGCCCACCACTTGCT+GGG - chr2_3:15298652-15298671 Msa0280520:intron 65.0%
CGCCCCCAAATGGCAGAGAC+TGG + chr2_3:15299614-15299633 None:intergenic 65.0%
TGCTGCGCCGTTCCCCTTGG+AGG + chr2_3:15293773-15293792 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 15293681 15300714 15293681 ID=Msa0280520;Name=Msa0280520
chr2_3 mRNA 15293681 15300714 15293681 ID=Msa0280520-mRNA-1;Parent=Msa0280520;Name=Msa0280520-mRNA-1;_AED=0.05;_eAED=0.05;_QI=149|1|1|1|0.81|0.75|12|719|522
chr2_3 exon 15293681 15294552 15293681 ID=Msa0280520-mRNA-1:exon:6388;Parent=Msa0280520-mRNA-1
chr2_3 exon 15294637 15294780 15294637 ID=Msa0280520-mRNA-1:exon:6387;Parent=Msa0280520-mRNA-1
chr2_3 exon 15295182 15295373 15295182 ID=Msa0280520-mRNA-1:exon:6386;Parent=Msa0280520-mRNA-1
chr2_3 exon 15295523 15295738 15295523 ID=Msa0280520-mRNA-1:exon:6385;Parent=Msa0280520-mRNA-1
chr2_3 exon 15296545 15296682 15296545 ID=Msa0280520-mRNA-1:exon:6384;Parent=Msa0280520-mRNA-1
chr2_3 exon 15296758 15296853 15296758 ID=Msa0280520-mRNA-1:exon:6383;Parent=Msa0280520-mRNA-1
chr2_3 exon 15297254 15297332 15297254 ID=Msa0280520-mRNA-1:exon:6382;Parent=Msa0280520-mRNA-1
chr2_3 exon 15297421 15297524 15297421 ID=Msa0280520-mRNA-1:exon:6381;Parent=Msa0280520-mRNA-1
chr2_3 exon 15297757 15297910 15297757 ID=Msa0280520-mRNA-1:exon:6380;Parent=Msa0280520-mRNA-1
chr2_3 exon 15298275 15298397 15298275 ID=Msa0280520-mRNA-1:exon:6379;Parent=Msa0280520-mRNA-1
chr2_3 exon 15299756 15299883 15299756 ID=Msa0280520-mRNA-1:exon:6378;Parent=Msa0280520-mRNA-1
chr2_3 exon 15300524 15300714 15300524 ID=Msa0280520-mRNA-1:exon:6377;Parent=Msa0280520-mRNA-1
chr2_3 five_prime_UTR 15300566 15300714 15300566 ID=Msa0280520-mRNA-1:five_prime_utr;Parent=Msa0280520-mRNA-1
chr2_3 CDS 15300524 15300565 15300524 ID=Msa0280520-mRNA-1:cds;Parent=Msa0280520-mRNA-1
chr2_3 CDS 15299756 15299883 15299756 ID=Msa0280520-mRNA-1:cds;Parent=Msa0280520-mRNA-1
chr2_3 CDS 15298275 15298397 15298275 ID=Msa0280520-mRNA-1:cds;Parent=Msa0280520-mRNA-1
chr2_3 CDS 15297757 15297910 15297757 ID=Msa0280520-mRNA-1:cds;Parent=Msa0280520-mRNA-1
chr2_3 CDS 15297421 15297524 15297421 ID=Msa0280520-mRNA-1:cds;Parent=Msa0280520-mRNA-1
chr2_3 CDS 15297254 15297332 15297254 ID=Msa0280520-mRNA-1:cds;Parent=Msa0280520-mRNA-1
chr2_3 CDS 15296758 15296853 15296758 ID=Msa0280520-mRNA-1:cds;Parent=Msa0280520-mRNA-1
chr2_3 CDS 15296545 15296682 15296545 ID=Msa0280520-mRNA-1:cds;Parent=Msa0280520-mRNA-1
chr2_3 CDS 15295523 15295738 15295523 ID=Msa0280520-mRNA-1:cds;Parent=Msa0280520-mRNA-1
chr2_3 CDS 15295182 15295373 15295182 ID=Msa0280520-mRNA-1:cds;Parent=Msa0280520-mRNA-1
chr2_3 CDS 15294637 15294780 15294637 ID=Msa0280520-mRNA-1:cds;Parent=Msa0280520-mRNA-1
chr2_3 CDS 15294400 15294552 15294400 ID=Msa0280520-mRNA-1:cds;Parent=Msa0280520-mRNA-1
chr2_3 three_prime_UTR 15293681 15294399 15293681 ID=Msa0280520-mRNA-1:three_prime_utr;Parent=Msa0280520-mRNA-1
Gene Sequence

>Msa0280520

ATGAAGTATTTGGGATTTCTTCCTGCTTTGGCGCCGGATGAGGTCAAGGAGCGAATTGAAAAAGTACGGAAGGCACAAAAAATGTGGGCAAAGACTAGCTTCAAGCAAAGGCGCCAGTTTTTACGTATACTACTGAAGTATATAATTAAACATCAAGCACTTATTTGCGAGATATCTTCACGTGATACTGGAAAAACAATGGTAGATGCTTCTCTAGGAGAAATAATGACAACATGTGAGAAGATAAATTGGCTATTGTCAGAGGGTGAAAAATGTTTGAAACCTGAGTACAGATCCTCTGGAAGATCAATGCTTCATAAGAGAGCCAGAGTGGAATTTCACCCCCTTGGCGTTATTGGGGCCATTGTGTCGTGGAACTATCCCTTCCATAATATTTTTAACCCTATGCTAGCAGCAGTTTTTTCTGGAAATGGAATTGTGATTAAGATATCAGAACATGCAAGTTGGTCTGGATGCTTTTACTTCCGGATCATCCAATCAGCCCTTGCTGCCATAGGAGCTCCAGAGGACCTTGTTGAGGTGATAACAGGGTTTGGTGAAACAGGAGAAGCACTGGTGTCTTCTGTGGATAAAGTCATTTTTGTTGGATCACCTGGGGTTGGTAAGATGATAATGAAAAATGCTTCTGAGACACTTATACCAGTTACACTAGAGCTTGGTGGAAAAGATGCATTTATTGTTTGTGAAGACGTAGATGTGGACCATGTTGCTCAAATTGCTGTCAGGGCTGTTCTTCAGTCAGGGGGGCAGAACTGTGCTGGTGCTGAACGATTTTATGTCCATAGGAACATTTATCCATCTTTTGTCAGCAAAGTTACCAAAATCATAAAATCTGTTACAGCTGGCCCACCACTTGCTGGGAAGTATGATATGGGAGCTTTATGCATGCATGAACATTCTGAAAAGCTTCTAGGTCTTGTAAATGATGCTTTAGACAAAGGAGCTGAAATTGTTGCACGCGGAAGTTTTGGACATATAGGCGAAGATGCTGTTGATCAGTATTTTCCCCCTACTGTGATTGTGAATGTGAACCACTCAATGAAATTGATGCAAGAAGAGGCATTTGGACCTATCATGCCGATAATGAAGTTTAGCTCTGATGAAGAGGTTATCAAGCTTGCTAATGACTCAAAATATGGGCTCAGCTGTGCTGTTTTCTCAGGCAGTCAAAGTCATGCCAGAGAGATAGCTTCTCATATACATTGTGGGGTTGCTGCAGTTAATGATTTTGCATCGAATTACATGTGTCAGTCTCTGCCATTTGGGGGCGTAAAACACAGTGGATTTGGACGATTCGGTGGTGTTGAAGGCTTGCGAGCATGCTGCCTTGTAAAGTCAGTAGTTGAAGATAGATGGTGGCCATTCATTAAGACAAAGATACCAAAGCCTATTCAGTATCCTGTGGCAGAAAATGGATTTGAATTTCAGGAGTCACTTGTTGAAGCGCTATATGGTCTTAGCATATGGGATCGTTTGCAAGCATTGGTAAACGTTTTGAAAATGCTTACTGAGCAGAACTCTACAGGTGGCAATAAAAAGGAGAAATGA
Protein sequence

>Msa0280520

MKYLGFLPALAPDEVKERIEKVRKAQKMWAKTSFKQRRQFLRILLKYIIKHQALICEISSRDTGKTMVDASLGEIMTTCEKINWLLSEGEKCLKPEYRSSGRSMLHKRARVEFHPLGVIGAIVSWNYPFHNIFNPMLAAVFSGNGIVIKISEHASWSGCFYFRIIQSALAAIGAPEDLVEVITGFGETGEALVSSVDKVIFVGSPGVGKMIMKNASETLIPVTLELGGKDAFIVCEDVDVDHVAQIAVRAVLQSGGQNCAGAERFYVHRNIYPSFVSKVTKIIKSVTAGPPLAGKYDMGALCMHEHSEKLLGLVNDALDKGAEIVARGSFGHIGEDAVDQYFPPTVIVNVNHSMKLMQEEAFGPIMPIMKFSSDEEVIKLANDSKYGLSCAVFSGSQSHAREIASHIHCGVAAVNDFASNYMCQSLPFGGVKHSGFGRFGGVEGLRACCLVKSVVEDRWWPFIKTKIPKPIQYPVAENGFEFQESLVEALYGLSIWDRLQALVNVLKMLTEQNSTGGNKKEK*