AlfalfaGEDB | Msa0280860

M. sativa cultivar zhongmu-4 / Msa0280860

KEGG: K14491
GO: GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0280860	XP_003594816.1	93.258	178	11	1	1	178	430	606	2.24e-114	347

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0280860	sp\|Q9ZWJ9\|ARR2_ARATH	36.893	206	88	9	2	173	467	664	5.81e-19	86.7

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0280860	G7IMX2	93.258	178	11	1	1	178	430	606	1.07e-114	347

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0280860	Msa0280890	0.890434	9.884239e-74	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0280860	MtrunA17_Chr2g0294911	93.258	178	11	1	1	178	430	606	2.06e-118	347
Msa0280860	MtrunA17_Chr4g0067981	56.150	187	65	5	3	173	495	680	2.70e-58	193

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0280860	AT3G16857.2	37.363	182	94	9	1	173	520	690	1.54e-18	82.8
Msa0280860	AT3G16857.3	37.363	182	94	9	1	173	450	620	1.61e-18	82.4

Find 46 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTCTGGAATTAAAGGATTA+GGG	0.249480	2_3:-15910133	Msa0280860:CDS
GAAGCTACTTCTGGAATTAA+AGG	0.261827	2_3:-15910140	Msa0280860:CDS
ACTTCTGGAATTAAAGGATT+AGG	0.286054	2_3:-15910134	Msa0280860:CDS
TTTCATGCGGAAGCTACTTC+TGG	0.314408	2_3:-15910149	Msa0280860:CDS
GATAATGAGTTTGACTTTGA+TGG	0.349646	2_3:-15909627	Msa0280860:CDS
TGAGGTGTTGACCAACATTA+TGG	0.359965	2_3:+15909904	None:intergenic
TAACAGGATCTGTTATAAAC+TGG	0.403457	2_3:+15909585	None:intergenic
ATTTGCTAATCCCCAATCAT+TGG	0.406561	2_3:+15910070	None:intergenic
CCATCAGAAGTCCAATGATT+GGG	0.416956	2_3:-15910081	Msa0280860:CDS
TCCATCAGAAGTCCAATGAT+TGG	0.463174	2_3:-15910082	Msa0280860:CDS
TGATTAGAAAGAGAGCTAAC+AGG	0.464856	2_3:+15909569	None:intergenic
TTCTCGCAGCACAAAGGCGT+TGG	0.468445	2_3:-15909657	Msa0280860:intron
CCCAATCATTGGACTTCTGA+TGG	0.470889	2_3:+15910081	None:intergenic
TTGTCGAGTCTGTTGGATAG+AGG	0.472904	2_3:+15909956	None:intergenic
CTTAATGAATTGTCGACAAA+AGG	0.475530	2_3:+15909876	None:intergenic
AGATCAATGTTGCCTTGTAA+AGG	0.489412	2_3:+15910011	None:intergenic
TTCCCTCTTAGATGCACTCC+GGG	0.489466	2_3:-15910200	Msa0280860:CDS
CAACATGCAAATCCTTTACA+AGG	0.495519	2_3:-15910023	Msa0280860:CDS
GTTGAGAAGCATCATATGTC+AGG	0.515544	2_3:+15910042	None:intergenic
CATGAGCGTATTTCTGAACC+AGG	0.515894	2_3:-15909778	Msa0280860:intron
GATTGGGGATTAGCAAATAC+AGG	0.520281	2_3:-15910065	Msa0280860:CDS
ATATCCAGTAGCAGTACAAA+AGG	0.527621	2_3:-15910176	Msa0280860:CDS
TGACTGACTTGATCAGAGAA+GGG	0.534175	2_3:+15909810	None:intergenic
TTGACTGACTTGATCAGAGA+AGG	0.537467	2_3:+15909809	None:intergenic
ATACCCGGAGTGCATCTAAG+AGG	0.561462	2_3:+15910197	None:intergenic
TAGTTGCCAATGTAAATAGT+TGG	0.567960	2_3:-15909546	Msa0280860:three_prime_UTR
GGAACACCAACTATTTACAT+TGG	0.570285	2_3:+15909540	None:intergenic
CTCTGATCAAGTCAGTCAAG+AGG	0.573459	2_3:-15909805	Msa0280860:CDS
TTGATCTCAATGTTTGTACT+CGG	0.576687	2_3:+15909834	None:intergenic
TTTCCCTCTTAGATGCACTC+CGG	0.583189	2_3:-15910201	Msa0280860:CDS
TTTGTCGACAATTCATTAAG+GGG	0.583507	2_3:-15909873	Msa0280860:CDS
TCTGGAATTAAAGGATTAGG+GGG	0.587922	2_3:-15910131	Msa0280860:CDS
GACTGACTTGATCAGAGAAG+GGG	0.587939	2_3:+15909811	None:intergenic
TTCTGGAATTAAAGGATTAG+GGG	0.589816	2_3:-15910132	Msa0280860:CDS
CAAGGTGATCACCATAATGT+TGG	0.591086	2_3:-15909915	Msa0280860:CDS
TGTCGACAAAAGGTGTATTG+AGG	0.593503	2_3:+15909886	None:intergenic
AATAGAGATGGTATGAGTCA+AGG	0.612883	2_3:-15909933	Msa0280860:CDS
TACCCGGAGTGCATCTAAGA+GGG	0.617885	2_3:+15910198	None:intergenic
CAGACTCGACAAAATAGAGA+TGG	0.622886	2_3:-15909945	Msa0280860:CDS
CATCAGAAGTCCAATGATTG+GGG	0.623338	2_3:-15910080	Msa0280860:CDS
TACAAAAGGCGTGTTTCATG+CGG	0.631885	2_3:-15910162	Msa0280860:CDS
TTGTATTTCTCGCAGCACAA+AGG	0.634173	2_3:-15909663	Msa0280860:intron
CCACGATGGCCTAAAATCGA+CGG	0.634519	2_3:+15909984	None:intergenic
GAGTGATGATTAGATTCATG+TGG	0.665667	2_3:+15909519	None:intergenic
GTACTGCTACTGGATATACC+CGG	0.685345	2_3:+15910182	None:intergenic
ATAAACTGGAATGTTGTCTG+CGG	0.732217	2_3:+15909599	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TAAGGAAACATAAATATTTT+GGG	+	chr2_3:15909919-15909938	None:intergenic	15.0%
!!!	AATAAATGATTTGTCTATAA+AGG	+	chr2_3:15909947-15909966	None:intergenic	15.0%
!!	TTAGTTTATGTAAAAATTTC+AGG	-	chr2_3:15910203-15910222	Msa0280860:CDS	15.0%
!!!	TAAGGAAACATAAATATTTT+GGG	+	chr2_3:15909919-15909938	None:intergenic	15.0%
!!!	AATAAATGATTTGTCTATAA+AGG	+	chr2_3:15909947-15909966	None:intergenic	15.0%
!!	TTAGTTTATGTAAAAATTTC+AGG	-	chr2_3:15910203-15910222	Msa0280860:CDS	15.0%
!!!	GTAAGGAAACATAAATATTT+TGG	+	chr2_3:15909920-15909939	None:intergenic	20.0%
!!!	GTAAGGAAACATAAATATTT+TGG	+	chr2_3:15909920-15909939	None:intergenic	20.0%
!!	TTTTGTCGACAATTCATTAA+GGG	-	chr2_3:15909776-15909795	Msa0280860:intron	25.0%
!	TTGTCTATAAAGGAAAAGTA+AGG	+	chr2_3:15909937-15909956	None:intergenic	25.0%
!!	TTTTGTCGACAATTCATTAA+GGG	-	chr2_3:15909776-15909795	Msa0280860:intron	25.0%
!	TTGTCTATAAAGGAAAAGTA+AGG	+	chr2_3:15909937-15909956	None:intergenic	25.0%
!!	ACTTCTGGAATTAAAGGATT+AGG	-	chr2_3:15909516-15909535	Msa0280860:three_prime_UTR	30.0%
!!	CTTCTGGAATTAAAGGATTA+GGG	-	chr2_3:15909517-15909536	Msa0280860:three_prime_UTR	30.0%
!!	TTCTGGAATTAAAGGATTAG+GGG	-	chr2_3:15909518-15909537	Msa0280860:three_prime_UTR	30.0%
	CTTAATGAATTGTCGACAAA+AGG	+	chr2_3:15909777-15909796	None:intergenic	30.0%
!	CTTTTGTCGACAATTCATTA+AGG	-	chr2_3:15909775-15909794	Msa0280860:intron	30.0%
	TTTGTCGACAATTCATTAAG+GGG	-	chr2_3:15909777-15909796	Msa0280860:intron	30.0%
	TTGATCTCAATGTTTGTACT+CGG	+	chr2_3:15909819-15909838	None:intergenic	30.0%
!!	AATATTTTGGGTCAACAGAA+AGG	+	chr2_3:15909907-15909926	None:intergenic	30.0%
!	GATAATGAGTTTGACTTTGA+TGG	-	chr2_3:15910023-15910042	Msa0280860:CDS	30.0%
	TAACAGGATCTGTTATAAAC+TGG	+	chr2_3:15910068-15910087	None:intergenic	30.0%
	TAGTTGCCAATGTAAATAGT+TGG	-	chr2_3:15910104-15910123	Msa0280860:CDS	30.0%
!!	ACTTCTGGAATTAAAGGATT+AGG	-	chr2_3:15909516-15909535	Msa0280860:three_prime_UTR	30.0%
!!	CTTCTGGAATTAAAGGATTA+GGG	-	chr2_3:15909517-15909536	Msa0280860:three_prime_UTR	30.0%
!!	TTCTGGAATTAAAGGATTAG+GGG	-	chr2_3:15909518-15909537	Msa0280860:three_prime_UTR	30.0%
	CTTAATGAATTGTCGACAAA+AGG	+	chr2_3:15909777-15909796	None:intergenic	30.0%
!	CTTTTGTCGACAATTCATTA+AGG	-	chr2_3:15909775-15909794	Msa0280860:intron	30.0%
	TTTGTCGACAATTCATTAAG+GGG	-	chr2_3:15909777-15909796	Msa0280860:intron	30.0%
	TTGATCTCAATGTTTGTACT+CGG	+	chr2_3:15909819-15909838	None:intergenic	30.0%
!!	AATATTTTGGGTCAACAGAA+AGG	+	chr2_3:15909907-15909926	None:intergenic	30.0%
!	GATAATGAGTTTGACTTTGA+TGG	-	chr2_3:15910023-15910042	Msa0280860:CDS	30.0%
	TAACAGGATCTGTTATAAAC+TGG	+	chr2_3:15910068-15910087	None:intergenic	30.0%
	TAGTTGCCAATGTAAATAGT+TGG	-	chr2_3:15910104-15910123	Msa0280860:CDS	30.0%
	ATATCCAGTAGCAGTACAAA+AGG	-	chr2_3:15909474-15909493	Msa0280860:three_prime_UTR	35.0%
!!	GAAGCTACTTCTGGAATTAA+AGG	-	chr2_3:15909510-15909529	Msa0280860:three_prime_UTR	35.0%
!	TCTGGAATTAAAGGATTAGG+GGG	-	chr2_3:15909519-15909538	Msa0280860:three_prime_UTR	35.0%
!	ATTTGCTAATCCCCAATCAT+TGG	+	chr2_3:15909583-15909602	None:intergenic	35.0%
	CAACATGCAAATCCTTTACA+AGG	-	chr2_3:15909627-15909646	Msa0280860:CDS	35.0%
	AGATCAATGTTGCCTTGTAA+AGG	+	chr2_3:15909642-15909661	None:intergenic	35.0%
	AATAGAGATGGTATGAGTCA+AGG	-	chr2_3:15909717-15909736	Msa0280860:intron	35.0%
	ATAAACTGGAATGTTGTCTG+CGG	+	chr2_3:15910054-15910073	None:intergenic	35.0%
	TGATTAGAAAGAGAGCTAAC+AGG	+	chr2_3:15910084-15910103	None:intergenic	35.0%
	GGAACACCAACTATTTACAT+TGG	+	chr2_3:15910113-15910132	None:intergenic	35.0%
	GAGTGATGATTAGATTCATG+TGG	+	chr2_3:15910134-15910153	None:intergenic	35.0%
	ATATCCAGTAGCAGTACAAA+AGG	-	chr2_3:15909474-15909493	Msa0280860:three_prime_UTR	35.0%
!!	GAAGCTACTTCTGGAATTAA+AGG	-	chr2_3:15909510-15909529	Msa0280860:three_prime_UTR	35.0%
!	TCTGGAATTAAAGGATTAGG+GGG	-	chr2_3:15909519-15909538	Msa0280860:three_prime_UTR	35.0%
!	ATTTGCTAATCCCCAATCAT+TGG	+	chr2_3:15909583-15909602	None:intergenic	35.0%
	CAACATGCAAATCCTTTACA+AGG	-	chr2_3:15909627-15909646	Msa0280860:CDS	35.0%
	AGATCAATGTTGCCTTGTAA+AGG	+	chr2_3:15909642-15909661	None:intergenic	35.0%
	AATAGAGATGGTATGAGTCA+AGG	-	chr2_3:15909717-15909736	Msa0280860:intron	35.0%
	ATAAACTGGAATGTTGTCTG+CGG	+	chr2_3:15910054-15910073	None:intergenic	35.0%
	TGATTAGAAAGAGAGCTAAC+AGG	+	chr2_3:15910084-15910103	None:intergenic	35.0%
	GGAACACCAACTATTTACAT+TGG	+	chr2_3:15910113-15910132	None:intergenic	35.0%
	GAGTGATGATTAGATTCATG+TGG	+	chr2_3:15910134-15910153	None:intergenic	35.0%
!	TACAAAAGGCGTGTTTCATG+CGG	-	chr2_3:15909488-15909507	Msa0280860:three_prime_UTR	40.0%
	TCCATCAGAAGTCCAATGAT+TGG	-	chr2_3:15909568-15909587	Msa0280860:exon	40.0%
	CCATCAGAAGTCCAATGATT+GGG	-	chr2_3:15909569-15909588	Msa0280860:exon	40.0%
	CATCAGAAGTCCAATGATTG+GGG	-	chr2_3:15909570-15909589	Msa0280860:exon	40.0%
!	GATTGGGGATTAGCAAATAC+AGG	-	chr2_3:15909585-15909604	Msa0280860:CDS	40.0%
!!	GTTGAGAAGCATCATATGTC+AGG	+	chr2_3:15909611-15909630	None:intergenic	40.0%
!	CTCTATTTTGTCGAGTCTGT+TGG	+	chr2_3:15909704-15909723	None:intergenic	40.0%
	CAGACTCGACAAAATAGAGA+TGG	-	chr2_3:15909705-15909724	Msa0280860:intron	40.0%
	CAAGGTGATCACCATAATGT+TGG	-	chr2_3:15909735-15909754	Msa0280860:intron	40.0%
!!	TGAGGTGTTGACCAACATTA+TGG	+	chr2_3:15909749-15909768	None:intergenic	40.0%
!	TGTCGACAAAAGGTGTATTG+AGG	+	chr2_3:15909767-15909786	None:intergenic	40.0%
!!	TGACTGACTTGATCAGAGAA+GGG	+	chr2_3:15909843-15909862	None:intergenic	40.0%
!!	TTGACTGACTTGATCAGAGA+AGG	+	chr2_3:15909844-15909863	None:intergenic	40.0%
	TTGTATTTCTCGCAGCACAA+AGG	-	chr2_3:15909987-15910006	Msa0280860:CDS	40.0%
!	TACAAAAGGCGTGTTTCATG+CGG	-	chr2_3:15909488-15909507	Msa0280860:three_prime_UTR	40.0%
	TCCATCAGAAGTCCAATGAT+TGG	-	chr2_3:15909568-15909587	Msa0280860:exon	40.0%
	CCATCAGAAGTCCAATGATT+GGG	-	chr2_3:15909569-15909588	Msa0280860:exon	40.0%
	CATCAGAAGTCCAATGATTG+GGG	-	chr2_3:15909570-15909589	Msa0280860:exon	40.0%
!	GATTGGGGATTAGCAAATAC+AGG	-	chr2_3:15909585-15909604	Msa0280860:CDS	40.0%
!!	GTTGAGAAGCATCATATGTC+AGG	+	chr2_3:15909611-15909630	None:intergenic	40.0%
!	CTCTATTTTGTCGAGTCTGT+TGG	+	chr2_3:15909704-15909723	None:intergenic	40.0%
	CAGACTCGACAAAATAGAGA+TGG	-	chr2_3:15909705-15909724	Msa0280860:intron	40.0%
	CAAGGTGATCACCATAATGT+TGG	-	chr2_3:15909735-15909754	Msa0280860:intron	40.0%
!!	TGAGGTGTTGACCAACATTA+TGG	+	chr2_3:15909749-15909768	None:intergenic	40.0%
!	TGTCGACAAAAGGTGTATTG+AGG	+	chr2_3:15909767-15909786	None:intergenic	40.0%
!!	TGACTGACTTGATCAGAGAA+GGG	+	chr2_3:15909843-15909862	None:intergenic	40.0%
!!	TTGACTGACTTGATCAGAGA+AGG	+	chr2_3:15909844-15909863	None:intergenic	40.0%
	TTGTATTTCTCGCAGCACAA+AGG	-	chr2_3:15909987-15910006	Msa0280860:CDS	40.0%
	TTTCCCTCTTAGATGCACTC+CGG	-	chr2_3:15909449-15909468	Msa0280860:three_prime_UTR	45.0%
	GTACTGCTACTGGATATACC+CGG	+	chr2_3:15909471-15909490	None:intergenic	45.0%
	TTTCATGCGGAAGCTACTTC+TGG	-	chr2_3:15909501-15909520	Msa0280860:three_prime_UTR	45.0%
	CCCAATCATTGGACTTCTGA+TGG	+	chr2_3:15909572-15909591	None:intergenic	45.0%
	GGATAGAGGAAAAACCACGA+TGG	+	chr2_3:15909683-15909702	None:intergenic	45.0%
	TTGTCGAGTCTGTTGGATAG+AGG	+	chr2_3:15909697-15909716	None:intergenic	45.0%
!!	GACTGACTTGATCAGAGAAG+GGG	+	chr2_3:15909842-15909861	None:intergenic	45.0%
	CTCTGATCAAGTCAGTCAAG+AGG	-	chr2_3:15909845-15909864	Msa0280860:CDS	45.0%
!	CATGAGCGTATTTCTGAACC+AGG	-	chr2_3:15909872-15909891	Msa0280860:CDS	45.0%
!	AGCGTATTTCTGAACCAGGT+TGG	-	chr2_3:15909876-15909895	Msa0280860:CDS	45.0%
	ACAGAAAGGAAGAACCAACC+TGG	+	chr2_3:15909893-15909912	None:intergenic	45.0%
	TTTCCCTCTTAGATGCACTC+CGG	-	chr2_3:15909449-15909468	Msa0280860:three_prime_UTR	45.0%
	GTACTGCTACTGGATATACC+CGG	+	chr2_3:15909471-15909490	None:intergenic	45.0%
	TTTCATGCGGAAGCTACTTC+TGG	-	chr2_3:15909501-15909520	Msa0280860:three_prime_UTR	45.0%
	CCCAATCATTGGACTTCTGA+TGG	+	chr2_3:15909572-15909591	None:intergenic	45.0%
	GGATAGAGGAAAAACCACGA+TGG	+	chr2_3:15909683-15909702	None:intergenic	45.0%
	TTGTCGAGTCTGTTGGATAG+AGG	+	chr2_3:15909697-15909716	None:intergenic	45.0%
!!	GACTGACTTGATCAGAGAAG+GGG	+	chr2_3:15909842-15909861	None:intergenic	45.0%
	CTCTGATCAAGTCAGTCAAG+AGG	-	chr2_3:15909845-15909864	Msa0280860:CDS	45.0%
!	CATGAGCGTATTTCTGAACC+AGG	-	chr2_3:15909872-15909891	Msa0280860:CDS	45.0%
!	AGCGTATTTCTGAACCAGGT+TGG	-	chr2_3:15909876-15909895	Msa0280860:CDS	45.0%
	ACAGAAAGGAAGAACCAACC+TGG	+	chr2_3:15909893-15909912	None:intergenic	45.0%
	TTCCCTCTTAGATGCACTCC+GGG	-	chr2_3:15909450-15909469	Msa0280860:three_prime_UTR	50.0%
	TACCCGGAGTGCATCTAAGA+GGG	+	chr2_3:15909455-15909474	None:intergenic	50.0%
	ATACCCGGAGTGCATCTAAG+AGG	+	chr2_3:15909456-15909475	None:intergenic	50.0%
!	CACGCCTTTTGTACTGCTAC+TGG	+	chr2_3:15909481-15909500	None:intergenic	50.0%
!!!	GATCTCTCGCCGTCGATTTT+AGG	-	chr2_3:15909657-15909676	Msa0280860:intron	50.0%
	CCACGATGGCCTAAAATCGA+CGG	+	chr2_3:15909669-15909688	None:intergenic	50.0%
	TTCCCTCTTAGATGCACTCC+GGG	-	chr2_3:15909450-15909469	Msa0280860:three_prime_UTR	50.0%
	TACCCGGAGTGCATCTAAGA+GGG	+	chr2_3:15909455-15909474	None:intergenic	50.0%
	ATACCCGGAGTGCATCTAAG+AGG	+	chr2_3:15909456-15909475	None:intergenic	50.0%
!	CACGCCTTTTGTACTGCTAC+TGG	+	chr2_3:15909481-15909500	None:intergenic	50.0%
!!!	GATCTCTCGCCGTCGATTTT+AGG	-	chr2_3:15909657-15909676	Msa0280860:intron	50.0%
	CCACGATGGCCTAAAATCGA+CGG	+	chr2_3:15909669-15909688	None:intergenic	50.0%
!!!	CCGTCGATTTTAGGCCATCG+TGG	-	chr2_3:15909666-15909685	Msa0280860:intron	55.0%
!	TTCTCGCAGCACAAAGGCGT+TGG	-	chr2_3:15909993-15910012	Msa0280860:CDS	55.0%
!!!	CCGTCGATTTTAGGCCATCG+TGG	-	chr2_3:15909666-15909685	Msa0280860:intron	55.0%
!	TTCTCGCAGCACAAAGGCGT+TGG	-	chr2_3:15909993-15910012	Msa0280860:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	15909444	15910228	15909444	ID=Msa0280860;Name=Msa0280860
chr2_3	mRNA	15909444	15910228	15909444	ID=Msa0280860-mRNA-1;Parent=Msa0280860;Name=Msa0280860-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|1\|0.5\|1\|1\|1\|2\|140\|178
chr2_3	exon	15909444	15909670	15909444	ID=Msa0280860-mRNA-1:exon:6622;Parent=Msa0280860-mRNA-1
chr2_3	exon	15909779	15910228	15909779	ID=Msa0280860-mRNA-1:exon:6621;Parent=Msa0280860-mRNA-1
chr2_3	CDS	15909779	15910228	15909779	ID=Msa0280860-mRNA-1:cds;Parent=Msa0280860-mRNA-1
chr2_3	CDS	15909584	15909670	15909584	ID=Msa0280860-mRNA-1:cds;Parent=Msa0280860-mRNA-1
chr2_3	three_prime_UTR	15909444	15909583	15909444	ID=Msa0280860-mRNA-1:three_prime_utr;Parent=Msa0280860-mRNA-1

Gene Sequence

>Msa0280860

AATAGTTTCCCTCTTAGATGCACTCCGGGTATATCCAGTAGCAGTACAAAAGGCGTGTTTCATGCGGAAGCTACTTCTGGAATTAAAGGATTAGGGGGATTTAGTTATGATGTTTATAATGAACTCCATCAGAAGTCCAATGATTGGGGATTAGCAAATACAGGCCTGACATATGATGCTTCTCAACATGCAAATCCTTTACAAGGCAACATTGATCTCTCGCCGTCGATTTTAGGCCATCGTGGTTTTTCCTCTATCCAACAGACTCGACAAAATAGAGATGGTATGAGTCAAGGTGATCACCATAATGTTGGTCAACACCTCAATACACCTTTTGTCGACAATTCATTAAGGGGTAAGAGTGAAAGAATTCCGAGTACAAACATTGAGATCAACCCCTTCTCTGATCAAGTCAGTCAAGAGGATCTCATGAGCGTATTTCTGAACCAGCACAAAGGCGTTGGACAAGTTGATAATGAGTTTGACTTTGATGGATATTCCGCAGACAACATTCCAGTTTATAACAGATCCTGTTAG

Protein sequence

>Msa0280860

NSFPLRCTPGISSSSTKGVFHAEATSGIKGLGGFSYDVYNELHQKSNDWGLANTGLTYDASQHANPLQGNIDLSPSILGHRGFSSIQQTRQNRDGMSQGDHHNVGQHLNTPFVDNSLRGKSERIPSTNIEINPFSDQVSQEDLMSVFLNQHKGVGQVDNEFDFDGYSADNIPVYNRSC*