AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0280890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0280890 MtrunA17_Chr2g0294911 91.523 637 22 4 1 636 1 606 0.0 1188
Msa0280890 MtrunA17_Chr4g0067981 59.831 712 172 14 1 631 2 680 0.0 754
Msa0280890 MtrunA17_Chr1g0161431 53.709 337 118 4 25 354 8 313 2.67e-108 340
Msa0280890 MtrunA17_Chr3g0137101 44.416 394 144 10 26 386 6 357 1.75e-94 304
Msa0280890 MtrunA17_Chr3g0123131 52.431 288 92 4 28 305 13 265 4.54e-88 285
Msa0280890 MtrunA17_Chr8g0376881 51.773 282 105 2 26 305 23 275 2.32e-85 277
Msa0280890 MtrunA17_Chr1g0149841 41.320 409 172 11 24 415 1 358 3.34e-84 273
Msa0280890 MtrunA17_Chr2g0304841 39.599 399 180 7 24 393 14 380 5.84e-78 261
Msa0280890 MtrunA17_Chr7g0275891 44.969 318 121 6 24 320 1 285 8.47e-78 251
Msa0280890 MtrunA17_Chr4g0074401 50.189 265 103 4 17 265 6 257 8.33e-77 256
Msa0280890 MtrunA17_Chr1g0149851 47.619 315 143 5 24 317 1 314 3.03e-75 250
Msa0280890 MtrunA17_Chr4g0074411 50.195 257 102 5 22 265 12 255 1.41e-72 245
Msa0280890 MtrunA17_Chr7g0275401 46.154 286 134 5 24 292 1 283 3.70e-72 234
Msa0280890 MtrunA17_Chr3g0134461 46.444 239 79 2 25 262 5 195 9.88e-60 198
Msa0280890 MtrunA17_Chr4g0074421 52.332 193 69 3 78 259 2 182 2.08e-58 194
Msa0280890 MtrunA17_Chr3g0134481 43.515 239 77 2 25 263 5 185 1.68e-57 192
Msa0280890 MtrunA17_Chr4g0009851 42.241 232 110 5 28 259 11 218 4.41e-52 182
Msa0280890 MtrunA17_Chr4g0009901 42.194 237 112 5 28 264 10 221 2.31e-50 176
Msa0280890 MtrunA17_Chr1g0149831 43.966 232 80 5 87 307 1 193 1.70e-49 172
Msa0280890 MtrunA17_Chr6g0471041 38.819 237 117 6 27 261 13 223 7.31e-43 159
Msa0280890 MtrunA17_Chr4g0009981 40.642 187 88 1 73 259 2 165 3.75e-40 147
Msa0280890 MtrunA17_Chr8g0391911 35.887 248 133 6 28 261 9 244 1.88e-35 134
Msa0280890 MtrunA17_Chr8g0383961 42.754 138 76 1 27 164 13 147 1.43e-28 115
Msa0280890 MtrunA17_Chr4g0011071 35.220 159 80 3 78 236 39 174 6.93e-27 107
Msa0280890 MtrunA17_Chr8g0350761 30.208 288 169 9 30 288 19 303 9.91e-26 110
Msa0280890 MtrunA17_Chr6g0473731 38.312 154 74 3 108 259 10 144 7.16e-25 108
Msa0280890 MtrunA17_Chr4g0009991 38.462 143 64 2 120 262 1 119 1.06e-22 94.0
Msa0280890 MtrunA17_Chr3g0127941 36.875 160 94 4 32 186 56 213 5.80e-22 100
Msa0280890 MtrunA17_Chr6g0456631 36.220 127 78 2 26 150 7 132 1.45e-21 92.4
Msa0280890 MtrunA17_Chr7g0276361 38.971 136 74 2 29 158 11 143 1.78e-21 99.0
Msa0280890 MtrunA17_Chr4g0030271 35.333 150 91 3 6 150 62 210 6.32e-21 97.8
Msa0280890 MtrunA17_Chr1g0181811 39.344 122 71 1 32 150 85 206 1.68e-20 96.3
Msa0280890 MtrunA17_Chr3g0091641 35.971 139 84 2 19 152 9 147 2.20e-20 95.5
Msa0280890 MtrunA17_Chr4g0061021 35.507 138 84 2 18 152 21 156 7.23e-19 90.5
Msa0280890 MtrunA17_Chr8g0345901 39.344 122 67 3 34 150 38 157 1.43e-18 89.7
Msa0280890 MtrunA17_Chr4g0031961 39.568 139 46 4 186 315 99 208 3.17e-18 86.3
Msa0280890 MtrunA17_Chr5g0423031 45.679 81 43 1 28 108 10 89 4.69e-16 76.6
Msa0280890 MtrunA17_Chr4g0010001 44.444 81 44 1 28 108 10 89 6.87e-16 73.6
Msa0280890 MtrunA17_Chr7g0255711 39.796 98 30 1 203 300 84 152 3.76e-15 76.6
Msa0280890 MtrunA17_Chr5g0400241 37.008 127 76 2 28 153 14 137 7.51e-14 74.7
Msa0280890 MtrunA17_Chr5g0400241 37.391 115 63 2 145 259 255 360 2.74e-13 72.8
Msa0280890 MtrunA17_Chr4g0054981 36.220 127 77 2 28 153 14 137 1.65e-13 73.6
Msa0280890 MtrunA17_Chr4g0054981 54.717 53 24 0 209 261 309 361 9.78e-12 67.8
Msa0280890 MtrunA17_Chr5g0417521 56.364 55 23 1 206 259 11 65 5.88e-12 67.8
Msa0280890 MtrunA17_Chr6g0461641 50.000 62 29 2 205 265 37 97 1.52e-11 66.6
Msa0280890 MtrunA17_Chr4g0040481 54.902 51 23 0 209 259 157 207 2.38e-11 66.2
Msa0280890 MtrunA17_Chr2g0321461 50.820 61 28 2 206 265 41 100 2.83e-11 65.9
Msa0280890 MtrunA17_Chr2g0324891 54.902 51 23 0 209 259 160 210 5.05e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0280890 AT3G16857.2 44.993 709 248 21 21 631 26 690 1.43e-168 498
Msa0280890 AT3G16857.1 44.315 686 241 20 21 608 26 668 2.48e-157 468
Msa0280890 AT3G16857.3 42.620 664 239 21 66 631 1 620 9.64e-138 416
Msa0280890 AT2G25180.1 53.448 290 96 3 26 310 11 266 9.34e-89 288
Msa0280890 AT2G01760.1 41.809 409 164 9 24 403 3 366 1.08e-88 281
Msa0280890 AT2G01760.2 39.130 437 164 10 24 403 3 394 1.24e-82 266
Msa0280890 AT4G31920.1 55.159 252 85 3 24 265 9 242 3.29e-81 267
Msa0280890 AT1G67710.1 45.479 365 129 10 29 362 8 333 1.20e-78 259
Msa0280890 AT5G58080.1 41.207 381 148 9 26 380 12 342 3.10e-72 245
Msa0280890 AT2G01760.3 38.439 346 139 10 87 403 1 301 1.67e-55 191
Msa0280890 AT5G49240.1 42.460 252 138 3 18 264 28 277 4.93e-54 187
Msa0280890 AT1G67710.2 41.042 307 111 10 87 362 1 268 1.34e-49 179
Msa0280890 AT1G49190.1 34.965 286 130 8 27 274 29 296 4.71e-43 160
Msa0280890 AT3G62670.1 38.627 233 128 5 33 259 42 265 9.06e-43 160
Msa0280890 AT1G67710.3 36.934 287 111 10 107 362 12 259 3.85e-34 135
Msa0280890 AT5G07210.2 29.730 370 210 12 32 364 16 372 9.08e-34 137
Msa0280890 AT5G07210.1 29.101 378 210 13 32 364 16 380 3.17e-31 129
Msa0280890 AT1G49190.2 44.800 125 69 0 27 151 29 153 3.73e-29 123
Msa0280890 AT2G27070.1 31.298 262 143 7 32 259 16 274 2.76e-28 120
Msa0280890 AT2G46790.3 40.650 123 68 2 32 150 37 158 7.97e-23 102
Msa0280890 AT2G46790.1 40.650 123 68 2 32 150 37 158 9.26e-23 102
Msa0280890 AT5G24470.1 39.200 125 71 2 31 151 49 172 7.77e-21 97.1
Msa0280890 AT5G60100.7 39.837 123 69 2 32 150 64 185 8.91e-21 95.5
Msa0280890 AT5G60100.6 39.837 123 69 2 32 150 64 185 8.91e-21 95.5
Msa0280890 AT5G60100.4 39.837 123 69 2 32 150 64 185 8.91e-21 95.5
Msa0280890 AT5G60100.5 39.837 123 69 2 32 150 64 185 1.39e-20 95.9
Msa0280890 AT5G60100.3 39.837 123 69 2 32 150 64 185 1.39e-20 95.9
Msa0280890 AT5G60100.1 39.837 123 69 2 32 150 64 185 1.39e-20 95.9
Msa0280890 AT5G60100.2 39.837 123 69 2 32 150 64 185 2.57e-20 95.1
Msa0280890 AT5G61380.1 38.710 124 73 1 32 152 19 142 5.83e-20 94.7
Msa0280890 AT5G02810.1 40.164 122 70 1 32 150 78 199 9.18e-20 94.4
Msa0280890 AT5G59570.2 39.200 125 44 2 194 315 125 220 4.78e-19 88.6
Msa0280890 AT5G59570.1 39.200 125 44 2 194 315 125 220 4.78e-19 88.6
Msa0280890 AT3G46640.2 38.211 123 46 2 194 315 128 221 1.93e-17 84.3
Msa0280890 AT3G46640.1 38.211 123 46 2 194 315 128 221 1.93e-17 84.3
Msa0280890 AT3G46640.3 38.211 123 46 2 194 315 128 221 2.51e-17 84.0
Msa0280890 AT2G40970.1 41.053 95 27 1 203 297 98 163 9.44e-15 75.1
Msa0280890 AT5G44190.2 59.649 57 23 0 203 259 140 196 1.20e-14 76.3
Msa0280890 AT5G44190.1 59.649 57 23 0 203 259 140 196 1.45e-14 76.3
Msa0280890 AT5G05090.1 40.000 95 28 1 203 297 74 139 2.76e-14 73.9
Msa0280890 AT3G10760.1 40.000 95 28 1 203 297 98 163 3.72e-14 74.7
Msa0280890 AT4G18020.8 36.029 136 78 3 26 154 12 145 6.13e-13 72.0
Msa0280890 AT4G18020.8 54.545 55 24 1 207 261 294 347 7.05e-11 65.5
Msa0280890 AT4G18020.11 36.029 136 78 3 26 154 12 145 6.13e-13 72.0
Msa0280890 AT4G18020.11 54.545 55 24 1 207 261 294 347 7.05e-11 65.5
Msa0280890 AT4G18020.4 36.029 136 78 3 26 154 12 145 6.13e-13 72.0
Msa0280890 AT4G18020.4 54.545 55 24 1 207 261 294 347 7.05e-11 65.5
Msa0280890 AT4G18020.5 36.029 136 78 3 26 154 12 145 6.13e-13 72.0
Msa0280890 AT4G18020.5 54.545 55 24 1 207 261 294 347 7.05e-11 65.5
Msa0280890 AT4G18020.10 36.029 136 78 3 26 154 12 145 6.13e-13 72.0
Msa0280890 AT4G18020.10 54.545 55 24 1 207 261 294 347 7.05e-11 65.5
Msa0280890 AT4G18020.7 36.029 136 78 3 26 154 12 145 6.13e-13 72.0
Msa0280890 AT4G18020.7 54.545 55 24 1 207 261 294 347 7.05e-11 65.5
Msa0280890 AT2G20570.1 42.105 95 50 2 170 259 108 202 6.19e-13 71.6
Msa0280890 AT4G18020.3 36.029 136 78 3 26 154 12 145 7.53e-13 72.0
Msa0280890 AT4G18020.3 54.545 55 24 1 207 261 294 347 7.37e-11 65.5
Msa0280890 AT4G18020.2 36.029 136 78 3 26 154 12 145 7.53e-13 72.0
Msa0280890 AT4G18020.2 54.545 55 24 1 207 261 294 347 7.37e-11 65.5
Msa0280890 AT4G18020.1 36.029 136 78 3 26 154 12 145 7.53e-13 72.0
Msa0280890 AT4G18020.1 54.545 55 24 1 207 261 294 347 7.37e-11 65.5
Msa0280890 AT4G18020.6 36.029 136 78 3 26 154 12 145 7.53e-13 72.0
Msa0280890 AT4G18020.6 54.545 55 24 1 207 261 294 347 7.37e-11 65.5
Msa0280890 AT4G18020.9 36.029 136 78 3 26 154 12 145 7.53e-13 72.0
Msa0280890 AT4G18020.9 54.545 55 24 1 207 261 294 347 7.37e-11 65.5
Msa0280890 AT3G04030.1 52.459 61 27 2 206 265 41 100 1.50e-11 67.0
Msa0280890 AT3G04030.3 52.459 61 27 2 206 265 41 100 1.77e-11 67.0
Msa0280890 AT2G20570.2 39.655 116 64 2 145 259 108 218 2.39e-11 66.6

Find 158 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGCTTCATCAACAGTTTA+TGG 0.134096 2_3:-15930949 Msa0280890:CDS
CTTCAAACCCTTTCAGCTTC+TGG 0.197138 2_3:-15930063 Msa0280890:CDS
CCTTATCTCCGACCAGTTTC+CGG 0.220153 2_3:-15931986 Msa0280890:CDS
GTTGTTGTTGTTGAGTTTCA+TGG 0.237423 2_3:+15932053 None:intergenic
CATGGATGGATTCAAACTTT+TGG 0.246707 2_3:-15931434 Msa0280890:CDS
CTTCTGGAATTAAAGGATTA+GGG 0.249480 2_3:-15929600 Msa0280890:CDS
GAAGCTACTTCTGGAATTAA+AGG 0.261827 2_3:-15929607 Msa0280890:CDS
ACTTCTGGAATTAAAGGATT+AGG 0.286054 2_3:-15929601 Msa0280890:CDS
ATTAAACTAAGAAAATTAAT+TGG 0.296217 2_3:+15932184 None:intergenic
TGCAAGTTACAACTGTTATA+AGG 0.306416 2_3:-15932242 Msa0280890:five_prime_UTR
AGTACGCCAGAGTCAATATT+TGG 0.308653 2_3:-15930111 Msa0280890:CDS
TTTCATGCGGAAGCTACTTC+TGG 0.314408 2_3:-15929616 Msa0280890:CDS
CACCAGTCTGCTCAATCCTT+TGG 0.321223 2_3:-15929865 Msa0280890:CDS
TTGAAGATCAATTTCATTTA+CGG 0.326626 2_3:+15930080 None:intergenic
GAGAACTCAAAACTAAGATT+TGG 0.328580 2_3:-15929985 Msa0280890:CDS
AAGAAGATGAAGCAGATGAT+AGG 0.337750 2_3:-15931016 Msa0280890:CDS
AAGAAAATTAATTGGTTTGT+GGG 0.341269 2_3:+15932192 None:intergenic
TGCTTTGGCTCAATGTTGAT+AGG 0.342601 2_3:+15929901 None:intergenic
GATAATGAGTTTGACTTTGA+TGG 0.349646 2_3:-15929099 Msa0280890:CDS
TTGAGCAGACTGGTGAAAAT+TGG 0.352834 2_3:+15929873 None:intergenic
TGAGGTGTTGACCAACATTA+TGG 0.359965 2_3:+15929371 None:intergenic
TTCAGCTTCTGGCCAGTTCT+CGG 0.367341 2_3:-15930052 Msa0280890:CDS
TGAAAATTGGCAAACTGCTT+TGG 0.368522 2_3:+15929886 None:intergenic
TCGAGGCTTTGAAGAATATA+TGG 0.369544 2_3:-15931190 Msa0280890:CDS
AAACAATGCTTACTAATAAC+AGG 0.383212 2_3:+15931385 None:intergenic
GGCTATCAAGTCACCGCTAT+TGG 0.383861 2_3:-15930359 Msa0280890:CDS
CTATTGACTGATATTCCATT+TGG 0.387671 2_3:+15929691 None:intergenic
TAAGAAAATTAATTGGTTTG+TGG 0.396703 2_3:+15932191 None:intergenic
TTCGGAAGAGAAAGAATAAC+TGG 0.397525 2_3:-15931157 Msa0280890:CDS
CTAGACTTTGCGCCGAGAAC+TGG 0.398375 2_3:+15930040 None:intergenic
TCATTTAGCATCTGACCTCT+TGG 0.399993 2_3:+15929769 None:intergenic
CACGGAGGCCCGCCGGAAAC+TGG 0.401569 2_3:+15931974 None:intergenic
AAACGTTGCCAGTCATCTTC+AGG 0.402049 2_3:-15930575 Msa0280890:intron
TAACAGGATCTGTTATAAAC+TGG 0.403457 2_3:+15929057 None:intergenic
ATTTGCTAATCCCCAATCAT+TGG 0.406561 2_3:+15929537 None:intergenic
CAAAGAAGCCTCGAGTTGTT+TGG 0.412556 2_3:-15930977 Msa0280890:CDS
AACCTCAGCTCTCTTACATT+TGG 0.414035 2_3:+15931525 None:intergenic
CCATCAGAAGTCCAATGATT+GGG 0.416956 2_3:-15929548 Msa0280890:CDS
TATTCAAGTTACTTTGCTGC+TGG 0.418842 2_3:+15930145 None:intergenic
ATGGAAATGATGAATGTTCC+TGG 0.426157 2_3:-15930610 Msa0280890:CDS
CACACTGATAAGTGGACATC+TGG 0.432232 2_3:+15930319 None:intergenic
AAGATTGAAGACCTTCATAA+AGG 0.449070 2_3:+15931890 None:intergenic
ATAAGGTTGCCGGAGTTTGA+TGG 0.460200 2_3:+15932003 None:intergenic
TATGGCTGTTGTGAATCAAT+TGG 0.460490 2_3:-15930931 Msa0280890:CDS
TCCATCAGAAGTCCAATGAT+TGG 0.463174 2_3:-15929549 Msa0280890:CDS
TGATTAGAAAGAGAGCTAAC+AGG 0.464856 2_3:+15929041 None:intergenic
TGGAAAGATCTGAAGCAATC+TGG 0.465336 2_3:-15931137 Msa0280890:CDS
TTCTCGCAGCACAAAGGCGT+TGG 0.468445 2_3:-15929129 Msa0280890:intron
CCGGAAACTGGTCGGAGATA+AGG 0.470882 2_3:+15931986 None:intergenic
CCCAATCATTGGACTTCTGA+TGG 0.470889 2_3:+15929548 None:intergenic
TTGTCGAGTCTGTTGGATAG+AGG 0.472904 2_3:+15929423 None:intergenic
ATGGCTGTTGTGAATCAATT+GGG 0.473696 2_3:-15930930 Msa0280890:CDS
ATGCAACCTACAGGACCAAA+TGG 0.473881 2_3:-15929706 Msa0280890:CDS
CTTAATGAATTGTCGACAAA+AGG 0.475530 2_3:+15929343 None:intergenic
ATCTGGAGTGTGACTCGAGC+GGG 0.475694 2_3:+15930336 None:intergenic
TATGAGCAGCAGCAGTAAAC+CGG 0.476502 2_3:-15929944 Msa0280890:CDS
CTAGCCAAGCTTCAAGCAGC+AGG 0.477941 2_3:-15930021 Msa0280890:CDS
GGAACATATTGGATTGGAGA+TGG 0.480393 2_3:-15931413 Msa0280890:CDS
AGAAGATGAAGCAGATGATA+GGG 0.481453 2_3:-15931015 Msa0280890:CDS
AGATCAATGTTGCCTTGTAA+AGG 0.489412 2_3:+15929478 None:intergenic
TTCCCTCTTAGATGCACTCC+GGG 0.489466 2_3:-15929667 Msa0280890:CDS
GTAGGTTGCATTAAAGATGA+TGG 0.494028 2_3:+15929718 None:intergenic
CAACATGCAAATCCTTTACA+AGG 0.495519 2_3:-15929490 Msa0280890:CDS
TACTCATCTTCAACGAATGA+AGG 0.499328 2_3:-15931065 Msa0280890:CDS
GATATTCCATTTGGTCCTGT+AGG 0.499380 2_3:+15929700 None:intergenic
GCTTTGGCTCAATGTTGATA+GGG 0.500235 2_3:+15929902 None:intergenic
TGGCCCATGAGATCTTATAT+AGG 0.502111 2_3:+15930384 None:intergenic
TATAAGATCTCATGGGCCAC+TGG 0.502139 2_3:-15930380 Msa0280890:CDS
CAAAACTAAGATTTGGAGAT+GGG 0.507173 2_3:-15929978 Msa0280890:CDS
CAAGGATCATGAGGCAAGTA+GGG 0.508406 2_3:+15931932 None:intergenic
CTGGTCGGAGATAAGGTTGC+CGG 0.509887 2_3:+15931993 None:intergenic
ATTCAAGTTACTTTGCTGCT+GGG 0.515195 2_3:+15930146 None:intergenic
GTTGAGAAGCATCATATGTC+AGG 0.515544 2_3:+15929509 None:intergenic
CATGAGCGTATTTCTGAACC+AGG 0.515894 2_3:-15929245 Msa0280890:intron
AGAGCCTATATAAGATCTCA+TGG 0.519318 2_3:-15930388 Msa0280890:CDS
GATTGGGGATTAGCAAATAC+AGG 0.520281 2_3:-15929532 Msa0280890:CDS
TTCAAAGCCTCGATTCGCAC+AGG 0.523205 2_3:+15931200 None:intergenic
ATATATGGCAGCATGTGGTT+CGG 0.524503 2_3:-15931175 Msa0280890:CDS
TCAAGGATCATGAGGCAAGT+AGG 0.525643 2_3:+15931931 None:intergenic
ATATCCAGTAGCAGTACAAA+AGG 0.527621 2_3:-15929643 Msa0280890:CDS
TTTAAGCGATGTGCATATGC+CGG 0.529451 2_3:-15931458 Msa0280890:CDS
TGACTGACTTGATCAGAGAA+GGG 0.534175 2_3:+15929277 None:intergenic
AAACCGGTGAACTTTCTTCA+CGG 0.535622 2_3:-15929928 Msa0280890:CDS
CGATGTGCATATGCCGGACA+TGG 0.535790 2_3:-15931452 Msa0280890:CDS
ATACAAATTCTCATGCTACA+AGG 0.536556 2_3:-15929744 Msa0280890:CDS
TCAAAACTAAGATTTGGAGA+TGG 0.536886 2_3:-15929979 Msa0280890:CDS
TTGACTGACTTGATCAGAGA+AGG 0.537467 2_3:+15929276 None:intergenic
ATCTCCGACCAGTTTCCGGC+GGG 0.537771 2_3:-15931982 Msa0280890:CDS
TTGTATCTTCGAAGGTTGAG+TGG 0.537963 2_3:-15930174 Msa0280890:CDS
GAACTGGCCAGAAGCTGAAA+GGG 0.541735 2_3:+15930056 None:intergenic
AGTTTGAATCCATCCATGTC+CGG 0.543637 2_3:+15931439 None:intergenic
TATACCGTTTGTATCTTCGA+AGG 0.545000 2_3:-15930182 Msa0280890:CDS
TCGCATATTTGCGCTGCCAA+AGG 0.548078 2_3:+15929849 None:intergenic
TCATCTTTAATGCAACCTAC+AGG 0.556863 2_3:-15929715 Msa0280890:CDS
GTGCATATGCCGGACATGGA+TGG 0.559547 2_3:-15931448 Msa0280890:CDS
ATACCCGGAGTGCATCTAAG+AGG 0.561462 2_3:+15929664 None:intergenic
ATATCATACCTGAAGATGAC+TGG 0.562314 2_3:+15930567 None:intergenic
AAGCCCTTGGTTGATGCAGA+TGG 0.564484 2_3:-15929803 Msa0280890:CDS
AGAACTGGCCAGAAGCTGAA+AGG 0.565004 2_3:+15930055 None:intergenic
ATAGTGATGTCGGCTGATGA+TGG 0.565866 2_3:-15931278 Msa0280890:intron
TAGTTGCCAATGTAAATAGT+TGG 0.567960 2_3:-15929018 Msa0280890:three_prime_UTR
GGAACACCAACTATTTACAT+TGG 0.570285 2_3:+15929012 None:intergenic
ACAAGTACACGGAGGCCCGC+CGG 0.571204 2_3:+15931967 None:intergenic
CTCTGATCAAGTCAGTCAAG+AGG 0.573459 2_3:-15929272 Msa0280890:CDS
TTGATCTCAATGTTTGTACT+CGG 0.576687 2_3:+15929301 None:intergenic
ATTCCGTGAAGAAAGTTCAC+CGG 0.576781 2_3:+15929925 None:intergenic
GTTCCTCCAAATATTGACTC+TGG 0.578483 2_3:+15930105 None:intergenic
TGCCAAAGGATTGAGCAGAC+TGG 0.579512 2_3:+15929863 None:intergenic
TTTCCCTCTTAGATGCACTC+CGG 0.583189 2_3:-15929668 Msa0280890:CDS
TTTGTCGACAATTCATTAAG+GGG 0.583507 2_3:-15929340 Msa0280890:CDS
TGACTCTGGCGTACTCATGA+AGG 0.583909 2_3:+15930119 None:intergenic
GCAAGAGCTCAAAGAAGAGG+AGG 0.587165 2_3:-15931043 Msa0280890:CDS
TCTGGAATTAAAGGATTAGG+GGG 0.587922 2_3:-15929598 Msa0280890:CDS
GACTGACTTGATCAGAGAAG+GGG 0.587939 2_3:+15929278 None:intergenic
TTCTGGAATTAAAGGATTAG+GGG 0.589816 2_3:-15929599 Msa0280890:CDS
CAAGGTGATCACCATAATGT+TGG 0.591086 2_3:-15929382 Msa0280890:CDS
AAGTCCTGCTGCTTGAAGCT+TGG 0.592461 2_3:+15930017 None:intergenic
GAATGTGTTTATAGTGATGT+CGG 0.592942 2_3:-15931288 Msa0280890:intron
TGTCGACAAAAGGTGTATTG+AGG 0.593503 2_3:+15929353 None:intergenic
AGATGAGTAATTAGCATCAG+TGG 0.594629 2_3:+15931079 None:intergenic
CTGCTGCAAAGAGAAGCCCT+TGG 0.595593 2_3:-15929816 Msa0280890:CDS
TGGTGAAGTTGAGGTTGACA+TGG 0.599570 2_3:+15932023 None:intergenic
AAGATCAATTTCATTTACGG+AGG 0.607064 2_3:+15930083 None:intergenic
GAGCCATCTGCATCAACCAA+GGG 0.609724 2_3:+15929800 None:intergenic
TGAGCCATCTGCATCAACCA+AGG 0.610874 2_3:+15929799 None:intergenic
AATAGAGATGGTATGAGTCA+AGG 0.612883 2_3:-15929400 Msa0280890:CDS
TCAACCTTCGAAGATACAAA+CGG 0.613662 2_3:+15930178 None:intergenic
AATCAAACCTGTGCGAATCG+AGG 0.614923 2_3:-15931207 Msa0280890:CDS
TCAACTTCACCATCAAACTC+CGG 0.617812 2_3:-15932012 Msa0280890:CDS
TACCCGGAGTGCATCTAAGA+GGG 0.617885 2_3:+15929665 None:intergenic
TATCTCCGACCAGTTTCCGG+CGG 0.618522 2_3:-15931983 Msa0280890:CDS
CAGACTCGACAAAATAGAGA+TGG 0.622886 2_3:-15929412 Msa0280890:CDS
CATCAGAAGTCCAATGATTG+GGG 0.623338 2_3:-15929547 Msa0280890:CDS
GCATTCTTTCAAGGATCATG+AGG 0.625199 2_3:+15931923 None:intergenic
TGACTCGAGCGGGCCAATAG+CGG 0.627696 2_3:+15930346 None:intergenic
TGGAAATGATGAATGTTCCT+GGG 0.628797 2_3:-15930609 Msa0280890:CDS
AAAGATCTGAAGCAATCTGG+TGG 0.628824 2_3:-15931134 Msa0280890:CDS
GAAGAATATATGGCAGCATG+TGG 0.629609 2_3:-15931180 Msa0280890:CDS
TACAAAAGGCGTGTTTCATG+CGG 0.631885 2_3:-15929629 Msa0280890:CDS
TTGTATTTCTCGCAGCACAA+AGG 0.634173 2_3:-15929135 Msa0280890:intron
CCACGATGGCCTAAAATCGA+CGG 0.634519 2_3:+15929451 None:intergenic
AAGGCAAGAGCTCAAAGAAG+AGG 0.635070 2_3:-15931046 Msa0280890:CDS
AGCGGTGACTTGATAGCCAG+TGG 0.637191 2_3:+15930364 None:intergenic
ACGCCAGAGTCAATATTTGG+AGG 0.638077 2_3:-15930108 Msa0280890:CDS
CATCTGGAGTGTGACTCGAG+CGG 0.639413 2_3:+15930335 None:intergenic
TCAATAGACCAAACAACTCG+AGG 0.639848 2_3:+15930969 None:intergenic
GAGGCCCGCCGGAAACTGGT+CGG 0.643720 2_3:+15931978 None:intergenic
GAGCCTATATAAGATCTCAT+GGG 0.648582 2_3:-15930387 Msa0280890:CDS
GGAGTTTGATGGTGAAGTTG+AGG 0.651951 2_3:+15932014 None:intergenic
CATCATCAACAACAAGTACA+CGG 0.653506 2_3:+15931956 None:intergenic
CAAGAGCTCAAAGAAGAGGA+GGG 0.663100 2_3:-15931042 Msa0280890:CDS
GAGTGATGATTAGATTCATG+TGG 0.665667 2_3:+15928991 None:intergenic
TACCAAATGTAAGAGAGCTG+AGG 0.673543 2_3:-15931527 Msa0280890:CDS
GTACTGCTACTGGATATACC+CGG 0.685345 2_3:+15929649 None:intergenic
ATGGCTCAGTCTCAACCAAG+AGG 0.702081 2_3:-15929784 Msa0280890:CDS
GTAATGAAAGGTGTGACACA+CGG 0.719143 2_3:-15931245 Msa0280890:CDS
ATAAACTGGAATGTTGTCTG+CGG 0.732217 2_3:+15929071 None:intergenic
CATCAACAACAAGTACACGG+AGG 0.818660 2_3:+15931959 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAACTAAGAAAATTAAT+TGG + chr2_3:15928931-15928950 None:intergenic 10.0%
!!! AGAAATATTTAAGATTCTAT+GGG + chr2_3:15930384-15930403 None:intergenic 15.0%
!!! AATAAATGATTTGTCTATAA+AGG + chr2_3:15931940-15931959 None:intergenic 15.0%
!! TTAGTTTATGTAAAAATTTC+AGG - chr2_3:15932193-15932212 Msa0280890:five_prime_UTR 15.0%
!!! AAGAAAATTAATTGGTTTGT+GGG + chr2_3:15928923-15928942 None:intergenic 20.0%
!!! TAAGAAAATTAATTGGTTTG+TGG + chr2_3:15928924-15928943 None:intergenic 20.0%
!!! TTTTTAACACAATTCATGAT+GGG + chr2_3:15929267-15929286 None:intergenic 20.0%
!!! ATTTTTAACACAATTCATGA+TGG + chr2_3:15929268-15929287 None:intergenic 20.0%
!! AAAAACTCAATCAAACAAAA+GGG + chr2_3:15929348-15929367 None:intergenic 20.0%
!! AAAAAACTCAATCAAACAAA+AGG + chr2_3:15929349-15929368 None:intergenic 20.0%
!! CCAGAACTAAAAATAAAAAT+GGG + chr2_3:15929380-15929399 None:intergenic 20.0%
!! ACCAGAACTAAAAATAAAAA+TGG + chr2_3:15929381-15929400 None:intergenic 20.0%
!!! TAAGTGTTTTTTTCAACTAT+TGG - chr2_3:15929462-15929481 Msa0280890:CDS 20.0%
!!! TTTGATTATGTTTTGATTGT+TGG - chr2_3:15929546-15929565 Msa0280890:CDS 20.0%
!!! TTGATTATGTTTTGATTGTT+GGG - chr2_3:15929547-15929566 Msa0280890:CDS 20.0%
!! TTCTTAGAGAGAATAAAAAT+GGG - chr2_3:15929620-15929639 Msa0280890:CDS 20.0%
!!! GCATTGTTTTTTTATTGATT+TGG - chr2_3:15929741-15929760 Msa0280890:CDS 20.0%
!!! AAATATTTAAGATTCTATGG+GGG + chr2_3:15930382-15930401 None:intergenic 20.0%
!!! GAAATATTTAAGATTCTATG+GGG + chr2_3:15930383-15930402 None:intergenic 20.0%
!!! CAGAAATATTTAAGATTCTA+TGG + chr2_3:15930385-15930404 None:intergenic 20.0%
!!! ATCATTTCCATAATCTTTTT+AGG + chr2_3:15930493-15930512 None:intergenic 20.0%
!! CTTCTAAACTAACTTATTAT+AGG + chr2_3:15930636-15930655 None:intergenic 20.0%
!!! ATAATAAGTTAGTTTAGAAG+TGG - chr2_3:15930636-15930655 Msa0280890:intron 20.0%
!! TTGAAGATCAATTTCATTTA+CGG + chr2_3:15931035-15931054 None:intergenic 20.0%
!!! AGTAAGGAAACATAATATTT+TGG + chr2_3:15931914-15931933 None:intergenic 20.0%
!! AGTGAAAAGTGATGATTTTA+TGG + chr2_3:15928972-15928991 None:intergenic 25.0%
!!! GTTTTTTGTTGTCTACTATT+TGG - chr2_3:15929027-15929046 Msa0280890:three_prime_UTR 25.0%
!!! CCCATTTTTATTTTTAGTTC+TGG - chr2_3:15929377-15929396 Msa0280890:CDS 25.0%
!! GCTTTTGATATGATTTAGTA+TGG - chr2_3:15929426-15929445 Msa0280890:CDS 25.0%
! CTTCTTAGAGAGAATAAAAA+TGG - chr2_3:15929619-15929638 Msa0280890:CDS 25.0%
!!! TTCAAACTTTTGGAACATAT+TGG - chr2_3:15929688-15929707 Msa0280890:CDS 25.0%
! AAACAATGCTTACTAATAAC+AGG + chr2_3:15929730-15929749 None:intergenic 25.0%
!!! TATTGATTTGGATCAATTGA+TGG - chr2_3:15929753-15929772 Msa0280890:CDS 25.0%
! CAAGGACATAACATAATTAA+GGG + chr2_3:15930224-15930243 None:intergenic 25.0%
! ATATCTCGGAAAAACTTTAA+GGG + chr2_3:15930310-15930329 None:intergenic 25.0%
! TATATCTCGGAAAAACTTTA+AGG + chr2_3:15930311-15930330 None:intergenic 25.0%
! AAATTGATATTGATATGCAG+AGG - chr2_3:15930462-15930481 Msa0280890:intron 25.0%
! CTTAACAGTAACAAAAATAG+AGG + chr2_3:15930589-15930608 None:intergenic 25.0%
!! TTTTGTCGACAATTCATTAA+GGG - chr2_3:15931771-15931790 Msa0280890:intron 25.0%
!!! TAATATTTTGGTCAACAGAA+AGG + chr2_3:15931902-15931921 None:intergenic 25.0%
! TTGTCTATAAAGGAAAAGTA+AGG + chr2_3:15931930-15931949 None:intergenic 25.0%
TGCAAGTTACAACTGTTATA+AGG - chr2_3:15928870-15928889 Msa0280890:three_prime_UTR 30.0%
AAGATTGAAGACCTTCATAA+AGG + chr2_3:15929225-15929244 None:intergenic 30.0%
! CAAGTCTCAAACTTTAACTT+TGG + chr2_3:15929496-15929515 None:intergenic 30.0%
!!! ACTTTTGGAACATATTGGAT+TGG - chr2_3:15929693-15929712 Msa0280890:CDS 30.0%
GAATGTGTTTATAGTGATGT+CGG - chr2_3:15929824-15929843 Msa0280890:CDS 30.0%
GCAAGGACATAACATAATTA+AGG + chr2_3:15930225-15930244 None:intergenic 30.0%
! TGAAAGAGAACATTTTTGCA+AGG + chr2_3:15930242-15930261 None:intergenic 30.0%
!! TCATCTTTGTTTGTTTTCCA+CGG - chr2_3:15930259-15930278 Msa0280890:intron 30.0%
GAATCACAAGGATTATATCT+CGG + chr2_3:15930324-15930343 None:intergenic 30.0%
AACAATCTTGTAGAATCACA+AGG + chr2_3:15930336-15930355 None:intergenic 30.0%
! ATAAGTTAGTTTAGAAGTGG+TGG - chr2_3:15930639-15930658 Msa0280890:intron 30.0%
!! TCGTACAAACTGATTTTGTA+AGG - chr2_3:15930672-15930691 Msa0280890:intron 30.0%
!! CGTACAAACTGATTTTGTAA+GGG - chr2_3:15930673-15930692 Msa0280890:intron 30.0%
ACTGTAACTCTTAACATTCA+AGG + chr2_3:15930847-15930866 None:intergenic 30.0%
AAGATCAATTTCATTTACGG+AGG + chr2_3:15931032-15931051 None:intergenic 30.0%
!!! AATCTTAGTTTTGAGTTCTC+AGG + chr2_3:15931127-15931146 None:intergenic 30.0%
GAGAACTCAAAACTAAGATT+TGG - chr2_3:15931127-15931146 Msa0280890:CDS 30.0%
TCAAAACTAAGATTTGGAGA+TGG - chr2_3:15931133-15931152 Msa0280890:CDS 30.0%
CAAAACTAAGATTTGGAGAT+GGG - chr2_3:15931134-15931153 Msa0280890:CDS 30.0%
ATACAAATTCTCATGCTACA+AGG - chr2_3:15931368-15931387 Msa0280890:intron 30.0%
! CTATTGACTGATATTCCATT+TGG + chr2_3:15931424-15931443 None:intergenic 30.0%
!! ACTTCTGGAATTAAAGGATT+AGG - chr2_3:15931511-15931530 Msa0280890:CDS 30.0%
!! CTTCTGGAATTAAAGGATTA+GGG - chr2_3:15931512-15931531 Msa0280890:CDS 30.0%
!! TTCTGGAATTAAAGGATTAG+GGG - chr2_3:15931513-15931532 Msa0280890:CDS 30.0%
CTTAATGAATTGTCGACAAA+AGG + chr2_3:15931772-15931791 None:intergenic 30.0%
! CTTTTGTCGACAATTCATTA+AGG - chr2_3:15931770-15931789 Msa0280890:intron 30.0%
TTTGTCGACAATTCATTAAG+GGG - chr2_3:15931772-15931791 Msa0280890:intron 30.0%
TTGATCTCAATGTTTGTACT+CGG + chr2_3:15931814-15931833 None:intergenic 30.0%
! GATAATGAGTTTGACTTTGA+TGG - chr2_3:15932013-15932032 Msa0280890:CDS 30.0%
TAACAGGATCTGTTATAAAC+TGG + chr2_3:15932058-15932077 None:intergenic 30.0%
TAGTTGCCAATGTAAATAGT+TGG - chr2_3:15932094-15932113 Msa0280890:five_prime_UTR 30.0%
ATGTAAAAATTTCAGGCTTG+AGG - chr2_3:15932200-15932219 Msa0280890:five_prime_UTR 30.0%
TGTAAAAATTTCAGGCTTGA+GGG - chr2_3:15932201-15932220 Msa0280890:five_prime_UTR 30.0%
! GTTGTTGTTGTTGAGTTTCA+TGG + chr2_3:15929062-15929081 None:intergenic 35.0%
CATCATCAACAACAAGTACA+CGG + chr2_3:15929159-15929178 None:intergenic 35.0%
! AAAAACGGAGCATTCTTTCA+AGG + chr2_3:15929201-15929220 None:intergenic 35.0%
GACCTTCATAAAGGCAAAAA+CGG + chr2_3:15929216-15929235 None:intergenic 35.0%
!! CATGGATGGATTCAAACTTT+TGG - chr2_3:15929678-15929697 Msa0280890:CDS 35.0%
! GGAAAAAACGTGGTAATGAA+AGG - chr2_3:15929855-15929874 Msa0280890:CDS 35.0%
!! TCGAGGCTTTGAAGAATATA+TGG - chr2_3:15929922-15929941 Msa0280890:CDS 35.0%
TTCGGAAGAGAAAGAATAAC+TGG - chr2_3:15929955-15929974 Msa0280890:CDS 35.0%
AGATGAGTAATTAGCATCAG+TGG + chr2_3:15930036-15930055 None:intergenic 35.0%
TACTCATCTTCAACGAATGA+AGG - chr2_3:15930047-15930066 Msa0280890:CDS 35.0%
AAGAAGATGAAGCAGATGAT+AGG - chr2_3:15930096-15930115 Msa0280890:CDS 35.0%
AGAAGATGAAGCAGATGATA+GGG - chr2_3:15930097-15930116 Msa0280890:CDS 35.0%
TGAGCTTCATCAACAGTTTA+TGG - chr2_3:15930163-15930182 Msa0280890:CDS 35.0%
TATGGCTGTTGTGAATCAAT+TGG - chr2_3:15930181-15930200 Msa0280890:CDS 35.0%
ATGGCTGTTGTGAATCAATT+GGG - chr2_3:15930182-15930201 Msa0280890:CDS 35.0%
! TCGGAAAAACTTTAAGGGAA+TGG + chr2_3:15930305-15930324 None:intergenic 35.0%
TAAGATTCTATGGGGGAAAA+GGG + chr2_3:15930375-15930394 None:intergenic 35.0%
TTAAGATTCTATGGGGGAAA+AGG + chr2_3:15930376-15930395 None:intergenic 35.0%
GGCTGTTCCTAAAAAGATTA+TGG - chr2_3:15930483-15930502 Msa0280890:intron 35.0%
ATGGAAATGATGAATGTTCC+TGG - chr2_3:15930502-15930521 Msa0280890:intron 35.0%
TGGAAATGATGAATGTTCCT+GGG - chr2_3:15930503-15930522 Msa0280890:intron 35.0%
ATATCATACCTGAAGATGAC+TGG + chr2_3:15930548-15930567 None:intergenic 35.0%
CAAAATCAGTTTGTACGATG+AGG + chr2_3:15930670-15930689 None:intergenic 35.0%
AGAGCCTATATAAGATCTCA+TGG - chr2_3:15930724-15930743 Msa0280890:intron 35.0%
GAGCCTATATAAGATCTCAT+GGG - chr2_3:15930725-15930744 Msa0280890:intron 35.0%
GTAACTCTTAACATTCAAGG+TGG + chr2_3:15930844-15930863 None:intergenic 35.0%
TATACCGTTTGTATCTTCGA+AGG - chr2_3:15930930-15930949 Msa0280890:CDS 35.0%
TCAACCTTCGAAGATACAAA+CGG + chr2_3:15930937-15930956 None:intergenic 35.0%
! ATTCAAGTTACTTTGCTGCT+GGG + chr2_3:15930969-15930988 None:intergenic 35.0%
! TATTCAAGTTACTTTGCTGC+TGG + chr2_3:15930970-15930989 None:intergenic 35.0%
TGAAAATTGGCAAACTGCTT+TGG + chr2_3:15931229-15931248 None:intergenic 35.0%
GTAGGTTGCATTAAAGATGA+TGG + chr2_3:15931397-15931416 None:intergenic 35.0%
TCATCTTTAATGCAACCTAC+AGG - chr2_3:15931397-15931416 Msa0280890:intron 35.0%
ATATCCAGTAGCAGTACAAA+AGG - chr2_3:15931469-15931488 Msa0280890:CDS 35.0%
!! GAAGCTACTTCTGGAATTAA+AGG - chr2_3:15931505-15931524 Msa0280890:CDS 35.0%
! TCTGGAATTAAAGGATTAGG+GGG - chr2_3:15931514-15931533 Msa0280890:CDS 35.0%
! ATTTGCTAATCCCCAATCAT+TGG + chr2_3:15931578-15931597 None:intergenic 35.0%
CAACATGCAAATCCTTTACA+AGG - chr2_3:15931622-15931641 Msa0280890:intron 35.0%
AGATCAATGTTGCCTTGTAA+AGG + chr2_3:15931637-15931656 None:intergenic 35.0%
AATAGAGATGGTATGAGTCA+AGG - chr2_3:15931712-15931731 Msa0280890:intron 35.0%
ATAAACTGGAATGTTGTCTG+CGG + chr2_3:15932044-15932063 None:intergenic 35.0%
TGATTAGAAAGAGAGCTAAC+AGG + chr2_3:15932074-15932093 None:intergenic 35.0%
GGAACACCAACTATTTACAT+TGG + chr2_3:15932103-15932122 None:intergenic 35.0%
GAGTGATGATTAGATTCATG+TGG + chr2_3:15932124-15932143 None:intergenic 35.0%
TCAACTTCACCATCAAACTC+CGG - chr2_3:15929100-15929119 Msa0280890:CDS 40.0%
GCATTCTTTCAAGGATCATG+AGG + chr2_3:15929192-15929211 None:intergenic 40.0%
!! CTCCGTTTTTGCCTTTATGA+AGG - chr2_3:15929211-15929230 Msa0280890:intron 40.0%
TACCAAATGTAAGAGAGCTG+AGG - chr2_3:15929585-15929604 Msa0280890:CDS 40.0%
AACCTCAGCTCTCTTACATT+TGG + chr2_3:15929590-15929609 None:intergenic 40.0%
TTTAAGCGATGTGCATATGC+CGG - chr2_3:15929654-15929673 Msa0280890:CDS 40.0%
AGTTTGAATCCATCCATGTC+CGG + chr2_3:15929676-15929695 None:intergenic 40.0%
! GGAACATATTGGATTGGAGA+TGG - chr2_3:15929699-15929718 Msa0280890:CDS 40.0%
! GTAATGAAAGGTGTGACACA+CGG - chr2_3:15929867-15929886 Msa0280890:CDS 40.0%
GAAGAATATATGGCAGCATG+TGG - chr2_3:15929932-15929951 Msa0280890:CDS 40.0%
ATATATGGCAGCATGTGGTT+CGG - chr2_3:15929937-15929956 Msa0280890:CDS 40.0%
! TGGAAAGATCTGAAGCAATC+TGG - chr2_3:15929975-15929994 Msa0280890:CDS 40.0%
! AAAGATCTGAAGCAATCTGG+TGG - chr2_3:15929978-15929997 Msa0280890:CDS 40.0%
TCAATAGACCAAACAACTCG+AGG + chr2_3:15930146-15930165 None:intergenic 40.0%
GGTCATATCTCATCTAACGT+GGG + chr2_3:15930615-15930634 None:intergenic 40.0%
AGGTCATATCTCATCTAACG+TGG + chr2_3:15930616-15930635 None:intergenic 40.0%
TGGCCCATGAGATCTTATAT+AGG + chr2_3:15930731-15930750 None:intergenic 40.0%
ATGTCCACTTATCAGTGTGA+GGG - chr2_3:15930797-15930816 Msa0280890:intron 40.0%
TTGTATCTTCGAAGGTTGAG+TGG - chr2_3:15930938-15930957 Msa0280890:CDS 40.0%
AGTACGCCAGAGTCAATATT+TGG - chr2_3:15931001-15931020 Msa0280890:CDS 40.0%
!! GTTCCTCCAAATATTGACTC+TGG + chr2_3:15931010-15931029 None:intergenic 40.0%
AAACCGGTGAACTTTCTTCA+CGG - chr2_3:15931184-15931203 Msa0280890:CDS 40.0%
ATTCCGTGAAGAAAGTTCAC+CGG + chr2_3:15931190-15931209 None:intergenic 40.0%
! GCTTTGGCTCAATGTTGATA+GGG + chr2_3:15931213-15931232 None:intergenic 40.0%
! TGCTTTGGCTCAATGTTGAT+AGG + chr2_3:15931214-15931233 None:intergenic 40.0%
TTGAGCAGACTGGTGAAAAT+TGG + chr2_3:15931242-15931261 None:intergenic 40.0%
TCATTTAGCATCTGACCTCT+TGG + chr2_3:15931346-15931365 None:intergenic 40.0%
GATATTCCATTTGGTCCTGT+AGG + chr2_3:15931415-15931434 None:intergenic 40.0%
! TACAAAAGGCGTGTTTCATG+CGG - chr2_3:15931483-15931502 Msa0280890:CDS 40.0%
TCCATCAGAAGTCCAATGAT+TGG - chr2_3:15931563-15931582 Msa0280890:intron 40.0%
CCATCAGAAGTCCAATGATT+GGG - chr2_3:15931564-15931583 Msa0280890:intron 40.0%
CATCAGAAGTCCAATGATTG+GGG - chr2_3:15931565-15931584 Msa0280890:intron 40.0%
! GATTGGGGATTAGCAAATAC+AGG - chr2_3:15931580-15931599 Msa0280890:intron 40.0%
!! GTTGAGAAGCATCATATGTC+AGG + chr2_3:15931606-15931625 None:intergenic 40.0%
! CTCTATTTTGTCGAGTCTGT+TGG + chr2_3:15931699-15931718 None:intergenic 40.0%
CAGACTCGACAAAATAGAGA+TGG - chr2_3:15931700-15931719 Msa0280890:intron 40.0%
CAAGGTGATCACCATAATGT+TGG - chr2_3:15931730-15931749 Msa0280890:intron 40.0%
!! TGAGGTGTTGACCAACATTA+TGG + chr2_3:15931744-15931763 None:intergenic 40.0%
! TGTCGACAAAAGGTGTATTG+AGG + chr2_3:15931762-15931781 None:intergenic 40.0%
!! TGACTGACTTGATCAGAGAA+GGG + chr2_3:15931838-15931857 None:intergenic 40.0%
!! TTGACTGACTTGATCAGAGA+AGG + chr2_3:15931839-15931858 None:intergenic 40.0%
TTGTATTTCTCGCAGCACAA+AGG - chr2_3:15931977-15931996 Msa0280890:CDS 40.0%
TGGTGAAGTTGAGGTTGACA+TGG + chr2_3:15929092-15929111 None:intergenic 45.0%
!! GGAGTTTGATGGTGAAGTTG+AGG + chr2_3:15929101-15929120 None:intergenic 45.0%
ATAAGGTTGCCGGAGTTTGA+TGG + chr2_3:15929112-15929131 None:intergenic 45.0%
CATCAACAACAAGTACACGG+AGG + chr2_3:15929156-15929175 None:intergenic 45.0%
CAAGGATCATGAGGCAAGTA+GGG + chr2_3:15929183-15929202 None:intergenic 45.0%
TCAAGGATCATGAGGCAAGT+AGG + chr2_3:15929184-15929203 None:intergenic 45.0%
! ATAGTGATGTCGGCTGATGA+TGG - chr2_3:15929834-15929853 Msa0280890:CDS 45.0%
!! GGCTGATGATGGAAAAAACG+TGG - chr2_3:15929845-15929864 Msa0280890:CDS 45.0%
AATCAAACCTGTGCGAATCG+AGG - chr2_3:15929905-15929924 Msa0280890:CDS 45.0%
AAGGCAAGAGCTCAAAGAAG+AGG - chr2_3:15930066-15930085 Msa0280890:CDS 45.0%
CAAGAGCTCAAAGAAGAGGA+GGG - chr2_3:15930070-15930089 Msa0280890:CDS 45.0%
! CAAAGAAGCCTCGAGTTGTT+TGG - chr2_3:15930135-15930154 Msa0280890:CDS 45.0%
GTACGTTAGATGAGATACCG+TGG + chr2_3:15930279-15930298 None:intergenic 45.0%
AAACGTTGCCAGTCATCTTC+AGG - chr2_3:15930537-15930556 Msa0280890:intron 45.0%
TATAAGATCTCATGGGCCAC+TGG - chr2_3:15930732-15930751 Msa0280890:intron 45.0%
CACACTGATAAGTGGACATC+TGG + chr2_3:15930796-15930815 None:intergenic 45.0%
GATGTCCACTTATCAGTGTG+AGG - chr2_3:15930796-15930815 Msa0280890:intron 45.0%
TGTCCACTTATCAGTGTGAG+GGG - chr2_3:15930798-15930817 Msa0280890:intron 45.0%
ACGCCAGAGTCAATATTTGG+AGG - chr2_3:15931004-15931023 Msa0280890:CDS 45.0%
CTTCAAACCCTTTCAGCTTC+TGG - chr2_3:15931049-15931068 Msa0280890:CDS 45.0%
TATGAGCAGCAGCAGTAAAC+CGG - chr2_3:15931168-15931187 Msa0280890:CDS 45.0%
ATGCAACCTACAGGACCAAA+TGG - chr2_3:15931406-15931425 Msa0280890:CDS 45.0%
TTTCCCTCTTAGATGCACTC+CGG - chr2_3:15931444-15931463 Msa0280890:CDS 45.0%
GTACTGCTACTGGATATACC+CGG + chr2_3:15931466-15931485 None:intergenic 45.0%
TTTCATGCGGAAGCTACTTC+TGG - chr2_3:15931496-15931515 Msa0280890:CDS 45.0%
CCCAATCATTGGACTTCTGA+TGG + chr2_3:15931567-15931586 None:intergenic 45.0%
GGATAGAGGAAAAACCACGA+TGG + chr2_3:15931678-15931697 None:intergenic 45.0%
TTGTCGAGTCTGTTGGATAG+AGG + chr2_3:15931692-15931711 None:intergenic 45.0%
!! GACTGACTTGATCAGAGAAG+GGG + chr2_3:15931837-15931856 None:intergenic 45.0%
CTCTGATCAAGTCAGTCAAG+AGG - chr2_3:15931840-15931859 Msa0280890:intron 45.0%
! CATGAGCGTATTTCTGAACC+AGG - chr2_3:15931867-15931886 Msa0280890:intron 45.0%
! AGCGTATTTCTGAACCAGGT+TGG - chr2_3:15931871-15931890 Msa0280890:intron 45.0%
ACAGAAAGGAAGAACCAACC+TGG + chr2_3:15931888-15931907 None:intergenic 45.0%
CCTTATCTCCGACCAGTTTC+CGG - chr2_3:15929126-15929145 Msa0280890:intron 50.0%
! TTCAAAGCCTCGATTCGCAC+AGG + chr2_3:15929915-15929934 None:intergenic 50.0%
GCAAGAGCTCAAAGAAGAGG+AGG - chr2_3:15930069-15930088 Msa0280890:CDS 50.0%
! ACGTTTTCTCTAGTGAGCCC+AGG + chr2_3:15930523-15930542 None:intergenic 50.0%
GGCTATCAAGTCACCGCTAT+TGG - chr2_3:15930753-15930772 Msa0280890:intron 50.0%
GTCCACTTATCAGTGTGAGG+GGG - chr2_3:15930799-15930818 Msa0280890:intron 50.0%
TGACTCTGGCGTACTCATGA+AGG + chr2_3:15930996-15931015 None:intergenic 50.0%
GAACTGGCCAGAAGCTGAAA+GGG + chr2_3:15931059-15931078 None:intergenic 50.0%
AGAACTGGCCAGAAGCTGAA+AGG + chr2_3:15931060-15931079 None:intergenic 50.0%
TTCAGCTTCTGGCCAGTTCT+CGG - chr2_3:15931060-15931079 Msa0280890:CDS 50.0%
! AAGTCCTGCTGCTTGAAGCT+TGG + chr2_3:15931098-15931117 None:intergenic 50.0%
CACCAGTCTGCTCAATCCTT+TGG - chr2_3:15931247-15931266 Msa0280890:CDS 50.0%
TGCCAAAGGATTGAGCAGAC+TGG + chr2_3:15931252-15931271 None:intergenic 50.0%
TCGCATATTTGCGCTGCCAA+AGG + chr2_3:15931266-15931285 None:intergenic 50.0%
! AAGCCCTTGGTTGATGCAGA+TGG - chr2_3:15931309-15931328 Msa0280890:intron 50.0%
GAGCCATCTGCATCAACCAA+GGG + chr2_3:15931315-15931334 None:intergenic 50.0%
TGAGCCATCTGCATCAACCA+AGG + chr2_3:15931316-15931335 None:intergenic 50.0%
ATGGCTCAGTCTCAACCAAG+AGG - chr2_3:15931328-15931347 Msa0280890:intron 50.0%
TTCCCTCTTAGATGCACTCC+GGG - chr2_3:15931445-15931464 Msa0280890:CDS 50.0%
TACCCGGAGTGCATCTAAGA+GGG + chr2_3:15931450-15931469 None:intergenic 50.0%
ATACCCGGAGTGCATCTAAG+AGG + chr2_3:15931451-15931470 None:intergenic 50.0%
! CACGCCTTTTGTACTGCTAC+TGG + chr2_3:15931476-15931495 None:intergenic 50.0%
!!! GATCTCTCGCCGTCGATTTT+AGG - chr2_3:15931652-15931671 Msa0280890:intron 50.0%
CCACGATGGCCTAAAATCGA+CGG + chr2_3:15931664-15931683 None:intergenic 50.0%
CTGGTCGGAGATAAGGTTGC+CGG + chr2_3:15929122-15929141 None:intergenic 55.0%
CCGGAAACTGGTCGGAGATA+AGG + chr2_3:15929129-15929148 None:intergenic 55.0%
TATCTCCGACCAGTTTCCGG+CGG - chr2_3:15929129-15929148 Msa0280890:intron 55.0%
CGATGTGCATATGCCGGACA+TGG - chr2_3:15929660-15929679 Msa0280890:CDS 55.0%
GTGCATATGCCGGACATGGA+TGG - chr2_3:15929664-15929683 Msa0280890:CDS 55.0%
! AGCGGTGACTTGATAGCCAG+TGG + chr2_3:15930751-15930770 None:intergenic 55.0%
! ATCTGGAGTGTGACTCGAGC+GGG + chr2_3:15930779-15930798 None:intergenic 55.0%
! CATCTGGAGTGTGACTCGAG+CGG + chr2_3:15930780-15930799 None:intergenic 55.0%
CACCCCCTCACACTGATAAG+TGG + chr2_3:15930804-15930823 None:intergenic 55.0%
CTAGACTTTGCGCCGAGAAC+TGG + chr2_3:15931075-15931094 None:intergenic 55.0%
CTAGCCAAGCTTCAAGCAGC+AGG - chr2_3:15931091-15931110 Msa0280890:CDS 55.0%
CTGCTGCAAAGAGAAGCCCT+TGG - chr2_3:15931296-15931315 Msa0280890:intron 55.0%
!!! CCGTCGATTTTAGGCCATCG+TGG - chr2_3:15931661-15931680 Msa0280890:intron 55.0%
! TTCTCGCAGCACAAAGGCGT+TGG - chr2_3:15931983-15932002 Msa0280890:CDS 55.0%
ATCTCCGACCAGTTTCCGGC+GGG - chr2_3:15929130-15929149 Msa0280890:intron 60.0%
TGACTCGAGCGGGCCAATAG+CGG + chr2_3:15930769-15930788 None:intergenic 60.0%
ACAAGTACACGGAGGCCCGC+CGG + chr2_3:15929148-15929167 None:intergenic 65.0%
GAGGCCCGCCGGAAACTGGT+CGG + chr2_3:15929137-15929156 None:intergenic 70.0%
CACGGAGGCCCGCCGGAAAC+TGG + chr2_3:15929141-15929160 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 15928857 15932277 15928857 ID=Msa0280890;Name=Msa0280890
chr2_3 mRNA 15928857 15932277 15928857 ID=Msa0280890-mRNA-1;Parent=Msa0280890;Name=Msa0280890-mRNA-1;_AED=0.04;_eAED=0.04;_QI=204|0.66|0.85|0.85|1|1|7|199|636
chr2_3 exon 15928857 15929142 15928857 ID=Msa0280890-mRNA-1:exon:6629;Parent=Msa0280890-mRNA-1
chr2_3 exon 15929246 15930207 15929246 ID=Msa0280890-mRNA-1:exon:6628;Parent=Msa0280890-mRNA-1
chr2_3 exon 15930324 15930408 15930324 ID=Msa0280890-mRNA-1:exon:6627;Parent=Msa0280890-mRNA-1
chr2_3 exon 15930576 15930652 15930576 ID=Msa0280890-mRNA-1:exon:6626;Parent=Msa0280890-mRNA-1
chr2_3 exon 15930922 15931296 15930922 ID=Msa0280890-mRNA-1:exon:6625;Parent=Msa0280890-mRNA-1
chr2_3 exon 15931398 15931550 15931398 ID=Msa0280890-mRNA-1:exon:6624;Parent=Msa0280890-mRNA-1
chr2_3 exon 15931902 15932277 15931902 ID=Msa0280890-mRNA-1:exon:6623;Parent=Msa0280890-mRNA-1
chr2_3 five_prime_UTR 15932074 15932277 15932074 ID=Msa0280890-mRNA-1:five_prime_utr;Parent=Msa0280890-mRNA-1
chr2_3 CDS 15931902 15932073 15931902 ID=Msa0280890-mRNA-1:cds;Parent=Msa0280890-mRNA-1
chr2_3 CDS 15931398 15931550 15931398 ID=Msa0280890-mRNA-1:cds;Parent=Msa0280890-mRNA-1
chr2_3 CDS 15930922 15931296 15930922 ID=Msa0280890-mRNA-1:cds;Parent=Msa0280890-mRNA-1
chr2_3 CDS 15930576 15930652 15930576 ID=Msa0280890-mRNA-1:cds;Parent=Msa0280890-mRNA-1
chr2_3 CDS 15930324 15930408 15930324 ID=Msa0280890-mRNA-1:cds;Parent=Msa0280890-mRNA-1
chr2_3 CDS 15929246 15930207 15929246 ID=Msa0280890-mRNA-1:cds;Parent=Msa0280890-mRNA-1
chr2_3 CDS 15929056 15929142 15929056 ID=Msa0280890-mRNA-1:cds;Parent=Msa0280890-mRNA-1
chr2_3 three_prime_UTR 15928857 15929055 15928857 ID=Msa0280890-mRNA-1:three_prime_utr;Parent=Msa0280890-mRNA-1
Gene Sequence

>Msa0280890

ATGAAACTCAACAACAACAACAAAATTTCCATGTCAACCTCAACTTCACCATCAAACTCCGGCAACCTTATCTCCGACCAGTTTCCGGCGGGCCTCCGTGTACTTGTTGTTGATGATGACCCTACTTGCCTCATGATCCTTGAAAGAATGCTCCGTTTTTGCCTTTATGAAGTTACCAAATGTAAGAGAGCTGAGGTTGCATTATCACTTCTTAGAGAGAATAAAAATGGGTTCGACATTGTTTTAAGCGATGTGCATATGCCGGACATGGATGGATTCAAACTTTTGGAACATATTGGATTGGAGATGGATCTTCCTGTTATTATGATGTCGGCTGATGATGGAAAAAACGTGGTAATGAAAGGTGTGACACACGGTGCTTGTGATTATCTAATCAAACCTGTGCGAATCGAGGCTTTGAAGAATATATGGCAGCATGTGGTTCGGAAGAGAAAGAATAACTGGAAAGATCTGAAGCAATCTGGTGGATTAGATGAAAGAGATCGAGAAAAAATTGTGTCCACTGATGCTAATTACTCATCTTCAACGAATGAAGGCAAGAGCTCAAAGAAGAGGAGGGATGAAGAAGATGAAGCAGATGATAGGGATGATTGTTCGACGTCAAAGAAGCCTCGAGTTGTTTGGTCTATTGAGCTTCATCAACAGTTTATGGCTGTTGTGAATCAATTGGGATTAGACAAGGCTGTTCCTAAAAAGATTATGGAAATGATGAATGTTCCTGGGCTCACTAGAGAAAACGTTGCCAGTCATCTTCAGAGCCTATATAAGATCTCATGGGCCACTGGCTATCAAGTCACCGCTATTGGCCCGCTCGAGTCACACTCCAGATGTCCACTTATCAAAATATACCGTTTGTATCTTCGAAGGTTGAGTGGAGTTTCCCAGCAGCAAAGTAACTTGAATAACTCCTTCATGAGTACGCCAGAGTCAATATTTGGAGGAACCTCCGTAAATGAAATTGATCTTCAAACCCTTTCAGCTTCTGGCCAGTTCTCGGCGCAAAGTCTAGCCAAGCTTCAAGCAGCAGGACTTTACAGTCCTGAGAACTCAAAACTAAGATTTGGAGATGGGCAACTGCAACATATGAGCAGCAGCAGTAAACCGGTGAACTTTCTTCACGGAATCCCTATCAACATTGAGCCAAAGCAGTTTGCCAATTTTCACCAGTCTGCTCAATCCTTTGGCAGCGCAAATATGCGAGTCAATGCTTCTGCTGCAAAGAGAAGCCCTTGGTTGATGCAGATGGCTCAGTCTCAACCAAGAGGTCAGATGCTAAATGAGAATACAAATTCTCATGCTACAAGGTTTCCATCATCTTTAATGCAACCTACAGGACCAAATGGAATATCAGTCAATAGTTTCCCTCTTAGATGCACTCCGGGTATATCCAGTAGCAGTACAAAAGGCGTGTTTCATGCGGAAGCTACTTCTGGAATTAAAGGATTAGGGGGATTTAGTTATGATGTTTATAATGAACTCCATCAGAAGTCCAATGATTGGGGATTAGCAAATACAGGCCTGACATATGATGCTTCTCAACATGCAAATCCTTTACAAGGCAACATTGATCTCTCGCCGTCGATTTTAGGCCATCGTGGTTTTTCCTCTATCCAACAGACTCGACAAAATAGAGATGGTATGAGTCAAGGTGATCACCATAATGTTGGTCAACACCTCAATACACCTTTTGTCGACAATTCATTAAGGGGTAAGAGTGAAAGAATTCCGAGTACAAACATTGAGATCAACCCCTTCTCTGATCAAGTCAGTCAAGAGGATCTCATGAGCGTATTTCTGAACCAGCACAAAGGCGTTGGACAAGTTGATAATGAGTTTGACTTTGATGGATATTCCGCAGACAACATTCCAGTTTATAACAGATCCTGTTAG
Protein sequence

>Msa0280890

MKLNNNNKISMSTSTSPSNSGNLISDQFPAGLRVLVVDDDPTCLMILERMLRFCLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNNWKDLKQSGGLDERDREKIVSTDANYSSSTNEGKSSKKRRDEEDEADDRDDCSTSKKPRVVWSIELHQQFMAVVNQLGLDKAVPKKIMEMMNVPGLTRENVASHLQSLYKISWATGYQVTAIGPLESHSRCPLIKIYRLYLRRLSGVSQQQSNLNNSFMSTPESIFGGTSVNEIDLQTLSASGQFSAQSLAKLQAAGLYSPENSKLRFGDGQLQHMSSSSKPVNFLHGIPINIEPKQFANFHQSAQSFGSANMRVNASAAKRSPWLMQMAQSQPRGQMLNENTNSHATRFPSSLMQPTGPNGISVNSFPLRCTPGISSSSTKGVFHAEATSGIKGLGGFSYDVYNELHQKSNDWGLANTGLTYDASQHANPLQGNIDLSPSILGHRGFSSIQQTRQNRDGMSQGDHHNVGQHLNTPFVDNSLRGKSERIPSTNIEINPFSDQVSQEDLMSVFLNQHKGVGQVDNEFDFDGYSADNIPVYNRSC*