AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0281300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0281300 MtrunA17_Chr2g0295671 91.365 718 13 1 6 723 53 721 0.0 1320
Msa0281300 MtrunA17_Chr4g0067521 76.323 718 121 1 6 723 55 723 0.0 1130
Msa0281300 MtrunA17_Chr6g0485841 54.020 709 275 2 6 714 53 710 0.0 766
Msa0281300 MtrunA17_Chr8g0360311 30.142 282 190 5 310 587 4 282 1.88e-32 127
Msa0281300 MtrunA17_Chr4g0055741 43.662 142 78 1 12 153 100 239 5.72e-25 105
Msa0281300 MtrunA17_Chr3g0122861 31.429 140 83 3 3 133 55 190 5.43e-14 73.2
Msa0281300 MtrunA17_Chr4g0068451 33.103 145 92 2 6 150 55 194 1.41e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0281300 AT3G06860.1 73.157 719 143 2 6 723 56 725 0.0 1053
Msa0281300 AT4G29010.1 53.465 707 280 1 9 715 57 714 0.0 751
Msa0281300 AT3G15290.1 29.078 282 195 3 309 587 3 282 1.04e-33 131
Msa0281300 AT3G15290.2 29.333 225 154 3 366 587 1 223 3.35e-25 105
Msa0281300 AT4G16800.1 48.182 110 57 0 47 156 134 243 6.75e-22 97.4
Msa0281300 AT5G43280.2 40.000 95 57 0 39 133 102 196 1.77e-15 76.6
Msa0281300 AT5G43280.1 40.000 95 57 0 39 133 102 196 6.97e-15 76.3
Msa0281300 AT4G16210.1 32.051 156 101 2 6 161 58 208 2.37e-13 71.2

Find 212 sgRNAs with CRISPR-Local

Find 471 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTTCTTGTTAGAGGTTTA+TGG 0.158540 2_3:-16692498 Msa0281300:three_prime_UTR
GAATGCCCATGGGACCTTTC+AGG 0.208356 2_3:-16694476 Msa0281300:intron
ATAGCAACTGCTTTAATTCT+TGG 0.228772 2_3:-16695828 Msa0281300:CDS
GAGAAGTCTAGGAACATTTC+TGG 0.240635 2_3:-16694019 Msa0281300:CDS
AGCAAAGATCTGTTGCTTTA+AGG 0.248253 2_3:+16695410 None:intergenic
GAATGGGCTTTCCACCTTAC+AGG 0.253342 2_3:-16693414 Msa0281300:intron
TTAGGGGAGGTATCATATTC+TGG 0.255795 2_3:-16693318 Msa0281300:intron
ATTAAATGATTTCTTGTTAG+AGG 0.268430 2_3:-16692505 Msa0281300:three_prime_UTR
ACTAATAATACCTGAAGAAA+TGG 0.270028 2_3:+16695277 None:intergenic
TTCCGCTTTGATTGCCTTTG+AGG 0.274258 2_3:+16697513 None:intergenic
TCTTGATATTTCAGCTGTTA+TGG 0.275414 2_3:-16693437 Msa0281300:CDS
AACATGGCTGCTTGTGTATA+TGG 0.276426 2_3:+16694555 None:intergenic
TTAATCTCTTGGAAGAGATT+TGG 0.277351 2_3:+16692589 None:intergenic
TTGATTGACCTCGTTGGTTT+TGG 0.289662 2_3:-16694374 Msa0281300:CDS
GCAAGGGAAATTCTGTTATA+AGG 0.293194 2_3:-16696503 Msa0281300:intron
AATTAAAGCAGTTGCTATTC+CGG 0.300104 2_3:+16695833 None:intergenic
TTTACTTCTTTCAAGATAAC+AGG 0.300630 2_3:+16695798 None:intergenic
GTAGTTGACTTGCTAGATAT+TGG 0.301850 2_3:-16694648 Msa0281300:CDS
TACCTTCTATAGTATTAGTT+TGG 0.304893 2_3:+16698522 None:intergenic
GGTTCCTAGACAAGTGAAAA+AGG 0.307004 2_3:-16695886 Msa0281300:CDS
GATAAGGCAGTAACTAAGTT+TGG 0.307330 2_3:-16694498 Msa0281300:CDS
CTTGATATTTCAGCTGTTAT+GGG 0.317805 2_3:-16693436 Msa0281300:CDS
CTCTGTTAACACCTGCTTCC+AGG 0.318195 2_3:+16695766 None:intergenic
TGCCATTGACGGCCTTGCCT+TGG 0.319213 2_3:-16698396 Msa0281300:CDS
GCGGAAGAAGCTCATAGTTT+GGG 0.320841 2_3:-16697496 Msa0281300:CDS
AATCCTTGGCGGAGGACTAA+TGG 0.322869 2_3:-16695859 Msa0281300:CDS
GCAGGTGTTAACAGAGTTAA+AGG 0.324044 2_3:-16695759 Msa0281300:intron
CTCTCAACGAGGAACATCTA+AGG 0.329114 2_3:-16697062 Msa0281300:intron
GCTGAATGGTCAAAACTATA+TGG 0.329548 2_3:-16693256 Msa0281300:CDS
GGCACATGTTATGCCACTTC+TGG 0.341446 2_3:-16694706 Msa0281300:CDS
TTGTTGGAGCCCATTTCTTC+AGG 0.348907 2_3:-16695287 Msa0281300:intron
TGACGGCCTTGCCTTGGGTG+GGG 0.352322 2_3:-16698390 Msa0281300:CDS
GCCATTGACGGCCTTGCCTT+GGG 0.357245 2_3:-16698395 Msa0281300:CDS
CAGGAAGCTGAAGCCTTTGA+AGG 0.361377 2_3:-16697130 Msa0281300:CDS
GTACTGGATTTGCTGTTAAT+AGG 0.361747 2_3:-16694587 Msa0281300:CDS
TCCTAATCTTAAGCACCCTT+TGG 0.362481 2_3:-16697293 Msa0281300:CDS
TGCATTTGGCCTAATACAAA+AGG 0.367285 2_3:-16698673 Msa0281300:CDS
AGCGGAAGAAGCTCATAGTT+TGG 0.367911 2_3:-16697497 Msa0281300:CDS
ATTTAGTATTCTTTCCAATC+AGG 0.370365 2_3:+16695322 None:intergenic
TCAATATAATTCTTCAACTC+TGG 0.382949 2_3:+16694040 None:intergenic
GCAGTGCTCACCAACTTATC+AGG 0.385840 2_3:+16697451 None:intergenic
TTGACGGCCTTGCCTTGGGT+GGG 0.389024 2_3:-16698391 Msa0281300:CDS
CAGAGACTTCCTCGTCTTGT+TGG 0.389480 2_3:-16697681 Msa0281300:CDS
GACGGCCTTGCCTTGGGTGG+GGG 0.392887 2_3:-16698389 Msa0281300:CDS
CTTCAACTTGGAGTAATTCC+TGG 0.394485 2_3:-16698210 Msa0281300:CDS
ATATTCTGGGCTGACTCTCT+TGG 0.394635 2_3:-16693304 Msa0281300:CDS
ATCCTTGGCGGAGGACTAAT+GGG 0.401282 2_3:-16695858 Msa0281300:CDS
ATTTCAGCTGTTATGGGAAT+GGG 0.401340 2_3:-16693430 Msa0281300:CDS
TCCTCGCATGAACAGGTACC+TGG 0.403270 2_3:-16695927 Msa0281300:intron
ATTACTCCAAGTTGAAGTTC+AGG 0.403692 2_3:+16698216 None:intergenic
CTCCAAACTAATACTATAGA+AGG 0.406695 2_3:-16698524 Msa0281300:intron
GGCCTAATACAAAAGGGATT+AGG 0.408978 2_3:-16698666 Msa0281300:intron
ACTAACACAGATTAATCTCT+TGG 0.409993 2_3:+16692578 None:intergenic
GGCAGCTCTTGCAGTCAAAT+AGG 0.411340 2_3:+16693213 None:intergenic
TTTGAAGCTTTCATAGTCAA+TGG 0.412725 2_3:+16695578 None:intergenic
CAAGATATATCATGTGTGAT+AGG 0.418853 2_3:-16696684 Msa0281300:CDS
TCCCCGTGCAGGACTCTTGA+AGG 0.425492 2_3:-16697233 Msa0281300:intron
CTTCTTTCCTGTGGTGAATG+AGG 0.429015 2_3:-16693503 Msa0281300:CDS
CTCTCTCTACCTCGGCATAT+TGG 0.432007 2_3:+16699182 None:intergenic
TAATTCTTCAACTCTGGATC+AGG 0.432685 2_3:+16694046 None:intergenic
ACAATCGACTTGAACCTGAT+TGG 0.437666 2_3:-16695336 Msa0281300:CDS
CTGTGGTGAATGAGGCCTGC+CGG 0.439100 2_3:-16693495 Msa0281300:CDS
GTGGTAGTTGGAAATTGTAC+TGG 0.450260 2_3:-16694603 Msa0281300:CDS
TTACAAAGCCGTGTCAAGAA+AGG 0.454138 2_3:-16695651 Msa0281300:CDS
ATTGACGGCCTTGCCTTGGG+TGG 0.454639 2_3:-16698392 Msa0281300:CDS
GGTGAGCACTGCTCGCCAAT+GGG 0.456730 2_3:-16697440 Msa0281300:CDS
TATTTCAGCTGTTATGGGAA+TGG 0.457742 2_3:-16693431 Msa0281300:CDS
AGCTGAAGCCTTTGAAGGAC+TGG 0.459095 2_3:-16697125 Msa0281300:CDS
GAGGTTGAAGGAAGAGAGAA+AGG 0.461139 2_3:-16696481 Msa0281300:intron
CTGACAAAATAGAATCCCTT+GGG 0.461433 2_3:-16697366 Msa0281300:CDS
TGGTGAGCACTGCTCGCCAA+TGG 0.462431 2_3:-16697441 Msa0281300:CDS
CCAAAACTCAAGCGCAAAAG+CGG 0.467436 2_3:-16697318 Msa0281300:CDS
TTCTGTTATAAGGAGGTTGA+AGG 0.468341 2_3:-16696493 Msa0281300:CDS
ACTTCCTCGTCTTGTTGGCC+TGG 0.468372 2_3:-16697676 Msa0281300:CDS
TTTCATGTTGCAGGGTGCCT+CGG 0.468952 2_3:-16692751 Msa0281300:intron
ATTGATTTGTAAGTTCGCTC+AGG 0.469812 2_3:+16694311 None:intergenic
ATTGAACATGGAATAGTTGC+TGG 0.470352 2_3:-16697256 Msa0281300:CDS
AAATCTGAAGACCGGATTGT+TGG 0.471151 2_3:-16695303 Msa0281300:CDS
TATGTTCCTATCCTTTGAAA+GGG 0.472582 2_3:+16692624 None:intergenic
TTATGTTCCTATCCTTTGAA+AGG 0.473371 2_3:+16692623 None:intergenic
CTAATAATACCTGAAGAAAT+GGG 0.474108 2_3:+16695278 None:intergenic
TGGTGTCTCTGTGGATCCTA+AGG 0.475651 2_3:-16693999 Msa0281300:intron
TATACTCAAGATTGGCTGAA+TGG 0.476205 2_3:-16693270 Msa0281300:CDS
CAAGTACATATACTCAAGAT+TGG 0.477197 2_3:-16693278 Msa0281300:CDS
CCTACGGTTGCTGCCATTGA+CGG 0.478877 2_3:-16698407 Msa0281300:CDS
ATAGTTGCTGGTCCCCGTGC+AGG 0.482614 2_3:-16697244 Msa0281300:CDS
TAGGGGAGGTATCATATTCT+GGG 0.484793 2_3:-16693317 Msa0281300:CDS
TGGGGTTACCGATCGTGGAT+TGG 0.487151 2_3:-16695907 Msa0281300:CDS
TTTAGTGTCACCTGATAAGT+TGG 0.490385 2_3:-16697461 Msa0281300:CDS
AGAAGTGGCATAACATGTGC+CGG 0.490895 2_3:+16694708 None:intergenic
TGTGGTGAATGAGGCCTGCC+GGG 0.491454 2_3:-16693494 Msa0281300:CDS
ACCCAAGGCAAGGCCGTCAA+TGG 0.492221 2_3:+16698394 None:intergenic
TCGTCTTGTTGGCCTGGCAA+AGG 0.493961 2_3:-16697670 Msa0281300:CDS
CAATCTTGAGTATATGTACT+TGG 0.493998 2_3:+16693279 None:intergenic
GCCTGCCGGGTCCTTGATGA+AGG 0.495917 2_3:-16693481 Msa0281300:CDS
AGATGTGGACCTGGTTATAG+AGG 0.496209 2_3:-16695556 Msa0281300:intron
AGGCAAACCTAGCTGAGCAC+TGG 0.496395 2_3:+16698236 None:intergenic
AGAATTATATTGAGAAGTCT+AGG 0.499743 2_3:-16694030 Msa0281300:CDS
CAAAACTCAAGCGCAAAAGC+GGG 0.502685 2_3:-16697317 Msa0281300:CDS
TCATCTCAAGTGCCTTTGCC+AGG 0.502826 2_3:+16697658 None:intergenic
GGCGGAGGACTAATGGGCTC+CGG 0.504928 2_3:-16695852 Msa0281300:CDS
AGGAAAACTCCAGTGGTAGT+TGG 0.505966 2_3:-16694615 Msa0281300:CDS
GCTTGTAAAACTATCAGAAA+AGG 0.506161 2_3:-16693542 Msa0281300:CDS
AGAAATGGGCTCCAACAATC+CGG 0.506846 2_3:+16695292 None:intergenic
AGATGTTTATCAAATTGATA+AGG 0.508427 2_3:-16694514 Msa0281300:CDS
CAAGAAAGGGCAAATGACTA+AGG 0.511387 2_3:-16695637 Msa0281300:CDS
ACCAAAGGGTGCTTAAGATT+AGG 0.513289 2_3:+16697292 None:intergenic
TCTTTCCCCTTTCAAAGGAT+AGG 0.513571 2_3:-16692630 Msa0281300:three_prime_UTR
TACAAAGCCGTGTCAAGAAA+GGG 0.515065 2_3:-16695650 Msa0281300:CDS
TAGATATTGGAAGGAAGATA+AGG 0.515478 2_3:-16694635 Msa0281300:CDS
TATCCTCTTGCATAAGTGGA+AGG 0.518919 2_3:+16694285 None:intergenic
GCCTTCATCAAGGACCCGGC+AGG 0.519276 2_3:+16693480 None:intergenic
GCATTTGGCCTAATACAAAA+GGG 0.521014 2_3:-16698672 Msa0281300:CDS
GGTTTGCCTGAACTTCAACT+TGG 0.523751 2_3:-16698222 Msa0281300:CDS
ACTGACAAAATAGAATCCCT+TGG 0.524121 2_3:-16697367 Msa0281300:CDS
GGCAAACCTAGCTGAGCACT+GGG 0.524634 2_3:+16698237 None:intergenic
TTTGACTGCAAGAGCTGCCA+AGG 0.528047 2_3:-16693209 Msa0281300:CDS
TGTATTGATGTTATTGAACA+TGG 0.528293 2_3:-16697268 Msa0281300:CDS
AGTTCTATTGATATCAAACC+AGG 0.528738 2_3:+16698545 None:intergenic
ATGGATGAGACAAACCTGTA+AGG 0.529918 2_3:+16693400 None:intergenic
GGAGTAATTCCTGGAGGTGG+AGG 0.530967 2_3:-16698201 Msa0281300:intron
TCCAAGTATTAATACCTGAA+AGG 0.533618 2_3:+16694462 None:intergenic
ACATGGCTGCTTGTGTATAT+GGG 0.533793 2_3:+16694556 None:intergenic
AATCAGGTTCAAGTCGATTG+TGG 0.534371 2_3:+16695338 None:intergenic
TAACTGCAATGCCTTCATCA+AGG 0.536095 2_3:+16693470 None:intergenic
TAACATCAATACAAACCAAA+GGG 0.541855 2_3:+16697278 None:intergenic
ATATCTCTCTTGCTTCCCCA+AGG 0.542922 2_3:+16697350 None:intergenic
CGACGCCACCAGTCCTTCAA+AGG 0.543636 2_3:+16697117 None:intergenic
AACCTTCAAGAGTCCTGCAC+GGG 0.552011 2_3:+16697231 None:intergenic
GGTACCTTTGAGAAGAGAGA+TGG 0.552600 2_3:+16695599 None:intergenic
TCATCCATACCTCCACCTCC+AGG 0.553219 2_3:+16698192 None:intergenic
ATGCAAGAGGATAAAAGAGC+AGG 0.553470 2_3:-16694275 Msa0281300:intron
TTTGTACGATGATAAACGTA+GGG 0.553744 2_3:-16694074 Msa0281300:CDS
TTGATTTGTAAGTTCGCTCA+GGG 0.555002 2_3:+16694312 None:intergenic
AACTAAGTTTGGAATGCCCA+TGG 0.555397 2_3:-16694487 Msa0281300:CDS
CGTGGACCGTCGACGACCAT+GGG 0.556229 2_3:-16697407 Msa0281300:CDS
CCTCGCATGAACAGGTACCT+GGG 0.556545 2_3:-16695926 Msa0281300:intron
TTTACAATTGAAGACCTCAA+AGG 0.556818 2_3:-16697527 Msa0281300:intron
TCATTTGCCCTTTCTTGACA+CGG 0.557977 2_3:+16695643 None:intergenic
GAAATTCTCAATAAATTGCA+TGG 0.563315 2_3:+16694334 None:intergenic
CCGTCAATGGCAGCAACCGT+AGG 0.563859 2_3:+16698407 None:intergenic
CTTGGAGTAATTCCTGGAGG+TGG 0.564243 2_3:-16698204 Msa0281300:CDS
TTGACTTGCTAGATATTGGA+AGG 0.564548 2_3:-16694644 Msa0281300:CDS
GCCATGTTTCTTATTGAACA+TGG 0.566980 2_3:-16694540 Msa0281300:CDS
TGAAGGTTGATTGACCTCGT+TGG 0.567282 2_3:-16694380 Msa0281300:intron
CAATGCCTTCATCAAGGACC+CGG 0.567719 2_3:+16693476 None:intergenic
GATCCTTCCACTTATGCAAG+AGG 0.573838 2_3:-16694288 Msa0281300:CDS
TTGAATGTGACAGCTTGCAA+TGG 0.575097 2_3:+16696727 None:intergenic
TCTTACCAATGGAATCCCCT+TGG 0.578031 2_3:+16693192 None:intergenic
AGAATACTAAATCTGAAGAC+CGG 0.579769 2_3:-16695311 Msa0281300:CDS
CTTTGAAGGACTGGTGGCGT+CGG 0.581262 2_3:-16697116 Msa0281300:CDS
CATGTTGCAGGGTGCCTCGG+TGG 0.583050 2_3:-16692748 Msa0281300:intron
GTACAATTTCCAACTACCAC+TGG 0.584412 2_3:+16694606 None:intergenic
TCTTGCAGTCAAATAGGCAG+AGG 0.584988 2_3:+16693219 None:intergenic
AGCTGCCAAGGGGATTCCAT+TGG 0.586048 2_3:-16693197 Msa0281300:intron
AAGGTTGCAATCCTTGGCGG+AGG 0.587973 2_3:-16695867 Msa0281300:CDS
GAACATTTCTGGTGTCTCTG+TGG 0.588565 2_3:-16694008 Msa0281300:CDS
AGAGATGATCTTCTTTCCTG+TGG 0.589302 2_3:-16693512 Msa0281300:CDS
GTACGTACAATCTCCAGAAG+TGG 0.593014 2_3:+16694693 None:intergenic
GAAGTGGCATAACATGTGCC+GGG 0.593082 2_3:+16694709 None:intergenic
TATACAGGGGATACAAAGCC+TGG 0.593274 2_3:-16698563 Msa0281300:intron
CTATGAAAGCTTCAAAGATG+TGG 0.593523 2_3:-16695571 Msa0281300:CDS
TATCTCTCTTGCTTCCCCAA+GGG 0.594221 2_3:+16697351 None:intergenic
CGGCAGGCCTCATTCACCAC+AGG 0.595221 2_3:+16693496 None:intergenic
GTTACTGTAACAGGTGCGAA+GGG 0.596947 2_3:-16698723 Msa0281300:intron
AAAACCATCTCTCTTCTCAA+AGG 0.599382 2_3:-16695603 Msa0281300:CDS
CGGAAGAAGCTCATAGTTTG+GGG 0.600236 2_3:-16697495 Msa0281300:CDS
ACAGGTGAAGCAACTCGCAA+AGG 0.600741 2_3:-16694103 Msa0281300:intron
TCGTGGACCGTCGACGACCA+TGG 0.603011 2_3:-16697408 Msa0281300:CDS
ATAACATCAATACAAACCAA+AGG 0.603172 2_3:+16697277 None:intergenic
TTAATACCTGAAAGGTCCCA+TGG 0.604478 2_3:+16694470 None:intergenic
CCTCAAGTACCTCTATAACC+AGG 0.604578 2_3:+16695547 None:intergenic
TGTTACTGTAACAGGTGCGA+AGG 0.604940 2_3:-16698724 Msa0281300:intron
TTGACTGCAAGAGCTGCCAA+GGG 0.608545 2_3:-16693208 Msa0281300:CDS
TTTAGCGGGAAGGAAGCCTA+CGG 0.609778 2_3:-16698423 Msa0281300:intron
ATGTTCCTATCCTTTGAAAG+GGG 0.611146 2_3:+16692625 None:intergenic
ATTTGTACGATGATAAACGT+AGG 0.612093 2_3:-16694075 Msa0281300:CDS
CCACGATATCTAGAGCCCAT+TGG 0.614387 2_3:+16697425 None:intergenic
GATGAGACAAACCTGTAAGG+TGG 0.615518 2_3:+16693403 None:intergenic
GTACCTGGGGTTACCGATCG+TGG 0.619071 2_3:-16695912 Msa0281300:CDS
CAAACCTAGCTGAGCACTGG+GGG 0.619654 2_3:+16698239 None:intergenic
CCAATGGGCTCTAGATATCG+TGG 0.621736 2_3:-16697425 Msa0281300:CDS
AGGGAAATTCTGTTATAAGG+AGG 0.623283 2_3:-16696500 Msa0281300:CDS
ACCATGTTCAATAAGAAACA+TGG 0.626221 2_3:+16694539 None:intergenic
TATAACAGGCATGCACTGCA+CGG 0.626383 2_3:-16698269 Msa0281300:intron
AAAGGCACTTGAGATGATGC+TGG 0.627294 2_3:-16697652 Msa0281300:intron
CTTGCAGTCAAATAGGCAGA+GGG 0.627797 2_3:+16693220 None:intergenic
AAGCTTCAAAGATGTGGACC+TGG 0.628857 2_3:-16695565 Msa0281300:CDS
ACTAAGTTTGGAATGCCCAT+GGG 0.629436 2_3:-16694486 Msa0281300:CDS
AGCCCATTAGTCCTCCGCCA+AGG 0.632377 2_3:+16695856 None:intergenic
TGAAGCCTTTGAAGGACTGG+TGG 0.633696 2_3:-16697122 Msa0281300:CDS
TCTAGGAACCAATCCACGAT+CGG 0.638845 2_3:+16695899 None:intergenic
CTCGCATGAACAGGTACCTG+GGG 0.638862 2_3:-16695925 Msa0281300:intron
AATCCACGATCGGTAACCCC+AGG 0.639715 2_3:+16695909 None:intergenic
TAATACCTGAAAGGTCCCAT+GGG 0.646764 2_3:+16694471 None:intergenic
TGATAGGACTCTTATTGAGA+AGG 0.647809 2_3:-16696668 Msa0281300:intron
AGCAAGTCAACTACTACTTG+CGG 0.649743 2_3:+16694657 None:intergenic
TTTGCCAGGCCAACAAGACG+AGG 0.650048 2_3:+16697672 None:intergenic
TAGCAACCCATGGTCGTCGA+CGG 0.652337 2_3:+16697401 None:intergenic
GAAAATAGTCCAATATGCCG+AGG 0.660823 2_3:-16699191 Msa0281300:intron
TTGTAAAGACTAGCAACCCA+TGG 0.662735 2_3:+16697391 None:intergenic
CAACCTTCAAGAGTCCTGCA+CGG 0.669633 2_3:+16697230 None:intergenic
GACCTCAAAGGCAATCAAAG+CGG 0.675043 2_3:-16697515 Msa0281300:CDS
GAAGATAAGGAAAACTCCAG+TGG 0.684571 2_3:-16694622 Msa0281300:CDS
CAACTTGGAGTAATTCCTGG+AGG 0.687196 2_3:-16698207 Msa0281300:CDS
CTTGCAAGTATACAATGAGG+AGG 0.689990 2_3:+16695369 None:intergenic
ACCTTCAAGAGTCCTGCACG+GGG 0.690656 2_3:+16697232 None:intergenic
TGACAAAATAGAATCCCTTG+GGG 0.709015 2_3:-16697365 Msa0281300:CDS
TTACTTGCAAGTATACAATG+AGG 0.724079 2_3:+16695366 None:intergenic
TGACTGCAAGAGCTGCCAAG+GGG 0.724836 2_3:-16693207 Msa0281300:CDS
GCAAACCTAGCTGAGCACTG+GGG 0.742891 2_3:+16698238 None:intergenic
TGACTGCGCTTGATCCACCG+AGG 0.803973 2_3:+16692734 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATATTTTGGATTTAAT+TGG - chr2_3:16696654-16696673 Msa0281300:intron 10.0%
!! AGATAATAAATACTTATTAT+TGG - chr2_3:16697824-16697843 Msa0281300:intron 10.0%
!!! TTATAATTTTAAATAGAAAG+GGG + chr2_3:16698614-16698633 None:intergenic 10.0%
!!! GATTATAATTTTAAATAGAA+AGG + chr2_3:16698616-16698635 None:intergenic 10.0%
!!! TTTGAATCTTTTTTATTTTT+TGG + chr2_3:16698896-16698915 None:intergenic 10.0%
!! GAAAAGAATAATAAGTAATA+TGG + chr2_3:16693472-16693491 None:intergenic 15.0%
!! ATAATCAACAACATTAAAAT+GGG - chr2_3:16693742-16693761 Msa0281300:intron 15.0%
!! CTTAAATAATTGAATAAAAC+TGG - chr2_3:16693802-16693821 Msa0281300:intron 15.0%
!!! ATTTATAGTATTGATGTTTT+CGG - chr2_3:16695346-16695365 Msa0281300:CDS 15.0%
!! TCAACAAACAAATTAATATT+AGG + chr2_3:16696061-16696080 None:intergenic 15.0%
!!! CTTCATTAACTATTATATTT+TGG - chr2_3:16696329-16696348 Msa0281300:intron 15.0%
!!! CTTCATTAACTATTATATTT+TGG - chr2_3:16696329-16696348 Msa0281300:intron 15.0%
!!! CTTCATTAACTATTATATTT+TGG - chr2_3:16696329-16696348 Msa0281300:intron 15.0%
!!! GTATATTTTACTTTCAAAAT+AGG + chr2_3:16696763-16696782 None:intergenic 15.0%
!! ATTTATGACTTAAAATTCTA+TGG - chr2_3:16696832-16696851 Msa0281300:intron 15.0%
!! AAATACTTATTATTGGAAAA+AGG - chr2_3:16697831-16697850 Msa0281300:intron 15.0%
!! AATCAAGAAATTATTAACTT+TGG + chr2_3:16697868-16697887 None:intergenic 15.0%
!!! TAATAATTTCTTGATTTTCT+TGG - chr2_3:16697872-16697891 Msa0281300:intron 15.0%
!!! TTTAGGGTAAAAAATAATAA+TGG + chr2_3:16698198-16698217 None:intergenic 15.0%
!!! GTAGGTTTAAAACAAAAATT+GGG + chr2_3:16692676-16692695 None:intergenic 20.0%
!!! TGTAGGTTTAAAACAAAAAT+TGG + chr2_3:16692677-16692696 None:intergenic 20.0%
!!! TCAAACTAGAGTAATTTTTA+CGG - chr2_3:16692709-16692728 Msa0281300:exon 20.0%
!! AAATTTCTTATTCTAAACAC+TGG + chr2_3:16693240-16693259 None:intergenic 20.0%
!!! AAGGATAATATTTTGTAGAA+AGG + chr2_3:16693281-16693300 None:intergenic 20.0%
!! AAACTAGAAAAATATGTTGA+TGG + chr2_3:16693503-16693522 None:intergenic 20.0%
!!! AAAGTCTTATTATGTTAGTT+AGG - chr2_3:16693713-16693732 Msa0281300:intron 20.0%
!!! TTAATGTTGTTGATTATGAA+AGG + chr2_3:16693739-16693758 None:intergenic 20.0%
!! CATAATCAACAACATTAAAA+TGG - chr2_3:16693741-16693760 Msa0281300:intron 20.0%
!!! TTACATATTTTCTACGAAAA+AGG + chr2_3:16693969-16693988 None:intergenic 20.0%
!! TAGTTGTTAATTAGTTGTTA+AGG - chr2_3:16694610-16694629 Msa0281300:CDS 20.0%
!! AAATTAAAGATATGCATTAC+AGG + chr2_3:16695461-16695480 None:intergenic 20.0%
!!! ATTTGATTAGTAGAATTTTC+TGG - chr2_3:16695477-16695496 Msa0281300:intron 20.0%
!! AGTCATTCAATTATAATCAT+TGG - chr2_3:16696394-16696413 Msa0281300:intron 20.0%
!! ACTAAATTCAAACATATGTA+GGG + chr2_3:16696736-16696755 None:intergenic 20.0%
!! TACTAAATTCAAACATATGT+AGG + chr2_3:16696737-16696756 None:intergenic 20.0%
!! AGATGTTTATCAAATTGATA+AGG - chr2_3:16697062-16697081 Msa0281300:intron 20.0%
!!! ACTGGTAGTTTTTTTTTTTA+AGG - chr2_3:16697646-16697665 Msa0281300:intron 20.0%
!!! TGATCTGATTTTGTTAAATT+TGG - chr2_3:16698000-16698019 Msa0281300:intron 20.0%
!! TTTAAGGGTTAACTTAATTA+GGG - chr2_3:16698241-16698260 Msa0281300:CDS 20.0%
!! AAAGTAAAGATGCAATTAAA+GGG + chr2_3:16698808-16698827 None:intergenic 20.0%
!! ATTAAATGATTTCTTGTTAG+AGG - chr2_3:16699071-16699090 Msa0281300:intron 20.0%
! AAAACTTTCTATACACTAAG+TGG + chr2_3:16692532-16692551 None:intergenic 25.0%
!!! AAGTTTTATCGACAGTAATT+TGG - chr2_3:16692545-16692564 Msa0281300:three_prime_UTR 25.0%
!!! AGTTTTATCGACAGTAATTT+GGG - chr2_3:16692546-16692565 Msa0281300:three_prime_UTR 25.0%
! TTGGGAAAAATCTTAAAACT+TGG - chr2_3:16692564-16692583 Msa0281300:three_prime_UTR 25.0%
! CTAAAGATAAGAAGAAAAAG+AGG - chr2_3:16692778-16692797 Msa0281300:intron 25.0%
! TAACAAAATATTCAGGTATG+AGG + chr2_3:16692837-16692856 None:intergenic 25.0%
! GTTACAGTAACAAAATATTC+AGG + chr2_3:16692844-16692863 None:intergenic 25.0%
!! GAATATTTTGTTACTGTAAC+AGG - chr2_3:16692844-16692863 Msa0281300:intron 25.0%
!!! GGTTTTGATATTAATGCATT+TGG - chr2_3:16692889-16692908 Msa0281300:intron 25.0%
! TACCTTCTATAGTATTAGTT+TGG + chr2_3:16693057-16693076 None:intergenic 25.0%
! TAAACATGACAAAATTAGAG+AGG + chr2_3:16693433-16693452 None:intergenic 25.0%
! TACTCTCAATACATTCAATT+TGG + chr2_3:16693536-16693555 None:intergenic 25.0%
! GACATAATGATGCATAATTT+AGG + chr2_3:16693600-16693619 None:intergenic 25.0%
! AATTGAATAAAACTGGTATG+AGG - chr2_3:16693809-16693828 Msa0281300:intron 25.0%
! TTCCTAAGACAATTTAGAAA+TGG + chr2_3:16693873-16693892 None:intergenic 25.0%
! TAACATCAATACAAACCAAA+GGG + chr2_3:16694301-16694320 None:intergenic 25.0%
! ATAACATCAATACAAACCAA+AGG + chr2_3:16694302-16694321 None:intergenic 25.0%
!! TGTATTGATGTTATTGAACA+TGG - chr2_3:16694308-16694327 Msa0281300:CDS 25.0%
! ATACATTATCATCCAGATTT+GGG + chr2_3:16694416-16694435 None:intergenic 25.0%
! TTGTTAATTAGTTGTTAAGG+AGG - chr2_3:16694613-16694632 Msa0281300:CDS 25.0%
! TGTTAATTAGTTGTTAAGGA+GGG - chr2_3:16694614-16694633 Msa0281300:CDS 25.0%
!!! ATAAAAGCACATTTTAAACC+TGG - chr2_3:16694659-16694678 Msa0281300:CDS 25.0%
!! TGATTTTTATAGAACTTCTG+AGG - chr2_3:16694714-16694733 Msa0281300:intron 25.0%
! TAGAAGGAAATCTAAAGATT+TGG + chr2_3:16694755-16694774 None:intergenic 25.0%
! ATTTCCTTCTAATTTAGTTG+TGG - chr2_3:16694764-16694783 Msa0281300:intron 25.0%
!! CAGATAGATATTGTTGATTA+AGG - chr2_3:16694800-16694819 Msa0281300:intron 25.0%
! GAAATAGAGAAGTGAAAAAT+TGG - chr2_3:16694997-16695016 Msa0281300:intron 25.0%
!!! AAGAATCATACAGTTTGTTT+TGG - chr2_3:16695125-16695144 Msa0281300:intron 25.0%
!!! AGAATCATACAGTTTGTTTT+GGG - chr2_3:16695126-16695145 Msa0281300:intron 25.0%
! CATTTACTGTTTATGTAATC+CGG - chr2_3:16695274-16695293 Msa0281300:intron 25.0%
! ATTTACTGTTTATGTAATCC+GGG - chr2_3:16695275-16695294 Msa0281300:intron 25.0%
! ATTACAGGCATAATTTAAAG+TGG + chr2_3:16695446-16695465 None:intergenic 25.0%
! ATATTAATATGCTACCTTTG+AGG + chr2_3:16695537-16695556 None:intergenic 25.0%
! TTTACTTCTTTCAAGATAAC+AGG + chr2_3:16695781-16695800 None:intergenic 25.0%
! AGAAGTAAATGAAAAATTCC+TGG - chr2_3:16695792-16695811 Msa0281300:CDS 25.0%
! CAATAGCGTATAATTTACAA+AGG + chr2_3:16696112-16696131 None:intergenic 25.0%
! CTTTGTAAATTATACGCTAT+TGG - chr2_3:16696110-16696129 Msa0281300:intron 25.0%
! ATTTAGTATTCTTTCCAATC+AGG + chr2_3:16696257-16696276 None:intergenic 25.0%
! CTAATAATACCTGAAGAAAT+GGG + chr2_3:16696301-16696320 None:intergenic 25.0%
! ACTAATAATACCTGAAGAAA+TGG + chr2_3:16696302-16696321 None:intergenic 25.0%
! ATTGAATTATAATCCGTTAG+TGG + chr2_3:16696507-16696526 None:intergenic 25.0%
!!! AACGGATTATAATTCAATGA+CGG - chr2_3:16696509-16696528 Msa0281300:intron 25.0%
! TAATAATACCTGAAGAAATG+GGG + chr2_3:16696300-16696319 None:intergenic 25.0%
! CTAATAATACCTGAAGAAAT+GGG + chr2_3:16696301-16696320 None:intergenic 25.0%
! ACTAATAATACCTGAAGAAA+TGG + chr2_3:16696302-16696321 None:intergenic 25.0%
! TGTCATTCAATTATAATCGT+TGG - chr2_3:16696708-16696727 Msa0281300:CDS 25.0%
! TGTAAAAAGTTGTACACTAA+CGG - chr2_3:16696806-16696825 Msa0281300:intron 25.0%
! TATCATACATCTTCTAATGA+AGG - chr2_3:16697179-16697198 Msa0281300:intron 25.0%
! GAAATTCTCAATAAATTGCA+TGG + chr2_3:16697245-16697264 None:intergenic 25.0%
!! ATTAACATGTGCTTTTAAAC+AGG - chr2_3:16697455-16697474 Msa0281300:CDS 25.0%
! TCAATATAATTCTTCAACTC+TGG + chr2_3:16697539-16697558 None:intergenic 25.0%
! AGAATTATATTGAGAAGTCT+AGG - chr2_3:16697546-16697565 Msa0281300:intron 25.0%
! ATTTCATCTATTTATCTCTC+TGG + chr2_3:16697803-16697822 None:intergenic 25.0%
! ATGTGTAAATAACCTTGAAA+CGG - chr2_3:16697896-16697915 Msa0281300:intron 25.0%
! TTTAACAAAATCAGATCAAG+TGG + chr2_3:16697998-16698017 None:intergenic 25.0%
!! CTTTAAGGGTTAACTTAATT+AGG - chr2_3:16698240-16698259 Msa0281300:CDS 25.0%
! TTAAGGGTTAACTTAATTAG+GGG - chr2_3:16698242-16698261 Msa0281300:CDS 25.0%
! ATAATCCCTTGTATATATGA+CGG - chr2_3:16698583-16698602 Msa0281300:intron 25.0%
! ATCATAGTTATTCAAACACA+AGG + chr2_3:16698652-16698671 None:intergenic 25.0%
!! CAATTAAAGGGTGTAATATA+TGG + chr2_3:16698796-16698815 None:intergenic 25.0%
! GAAAGTAAAGATGCAATTAA+AGG + chr2_3:16698809-16698828 None:intergenic 25.0%
!!! ATTTTGACAAGCATAATTGT+TGG + chr2_3:16699188-16699207 None:intergenic 25.0%
ATCCAGTCATAACTCAAATA+TGG + chr2_3:16692477-16692496 None:intergenic 30.0%
TCAAAACTACAATGAGCTTT+GGG + chr2_3:16692609-16692628 None:intergenic 30.0%
ATCAAAACTACAATGAGCTT+TGG + chr2_3:16692610-16692629 None:intergenic 30.0%
TTTGAACAATCTATGCTTGT+AGG + chr2_3:16692694-16692713 None:intergenic 30.0%
AGAGGAAACGTATAATCAAA+CGG - chr2_3:16692796-16692815 Msa0281300:intron 30.0%
! TACCTAATCCCTTTTGTATT+AGG + chr2_3:16692915-16692934 None:intergenic 30.0%
! ACTCATTTTCTAATTCTTCC+TGG - chr2_3:16692987-16693006 Msa0281300:intron 30.0%
AGTTCTATTGATATCAAACC+AGG + chr2_3:16693034-16693053 None:intergenic 30.0%
CTCCAAACTAATACTATAGA+AGG - chr2_3:16693052-16693071 Msa0281300:intron 30.0%
! CTTCTCATTTCATCTTTTAG+CGG - chr2_3:16693138-16693157 Msa0281300:intron 30.0%
! TTCTCATTTCATCTTTTAGC+GGG - chr2_3:16693139-16693158 Msa0281300:intron 30.0%
TTATCCTTTCTTCCTATAAC+AGG - chr2_3:16693293-16693312 Msa0281300:CDS 30.0%
GAATTAGTGCAACTAACAAT+CGG + chr2_3:16693411-16693430 None:intergenic 30.0%
! CAACAACATTAAAATGGGTT+AGG - chr2_3:16693747-16693766 Msa0281300:intron 30.0%
TTAGAAATGGCGAGTTAAAA+TGG + chr2_3:16693860-16693879 None:intergenic 30.0%
TTTACAATTGAAGACCTCAA+AGG - chr2_3:16694049-16694068 Msa0281300:CDS 30.0%
GATACATTATCATCCAGATT+TGG + chr2_3:16694417-16694436 None:intergenic 30.0%
ATAATGTATCTAACCTTTGC+AGG - chr2_3:16694427-16694446 Msa0281300:intron 30.0%
AATTAACAACTAGTACCTTG+AGG + chr2_3:16694602-16694621 None:intergenic 30.0%
GTTAATTAGTTGTTAAGGAG+GGG - chr2_3:16694615-16694634 Msa0281300:CDS 30.0%
CAAGATATATCATGTGTGAT+AGG - chr2_3:16694892-16694911 Msa0281300:intron 30.0%
AGTTAGCACATAAGTTGTTA+AGG - chr2_3:16694946-16694965 Msa0281300:intron 30.0%
ACAAAAACTCTCCATACTAT+GGG + chr2_3:16694972-16694991 None:intergenic 30.0%
AACAAAAACTCTCCATACTA+TGG + chr2_3:16694973-16694992 None:intergenic 30.0%
CGGATTACATAAACAGTAAA+TGG + chr2_3:16695276-16695295 None:intergenic 30.0%
! AGGCATAATTTAAAGTGGTT+AGG + chr2_3:16695441-16695460 None:intergenic 30.0%
!! CTTCTGAAAAGAAAGTACTA+AGG + chr2_3:16695601-16695620 None:intergenic 30.0%
! AATTAAAGCAGTTGCTATTC+CGG + chr2_3:16695746-16695765 None:intergenic 30.0%
ATAGCAACTGCTTTAATTCT+TGG - chr2_3:16695748-16695767 Msa0281300:intron 30.0%
GAGAAAAGATCCTTGTAAAT+TGG - chr2_3:16695841-16695860 Msa0281300:CDS 30.0%
! TTTGAAGCTTTCATAGTCAA+TGG + chr2_3:16696001-16696020 None:intergenic 30.0%
TTACTTGCAAGTATACAATG+AGG + chr2_3:16696213-16696232 None:intergenic 30.0%
AGAATACTAAATCTGAAGAC+CGG - chr2_3:16696265-16696284 Msa0281300:intron 30.0%
TGTAAAAAGTTGTCCACTAA+CGG - chr2_3:16696491-16696510 Msa0281300:CDS 30.0%
GAAGAGTGAACACAAATAAT+TGG + chr2_3:16696565-16696584 None:intergenic 30.0%
TAGATATTGGAAGGAAGATA+AGG - chr2_3:16696941-16696960 Msa0281300:intron 30.0%
ACCATGTTCAATAAGAAACA+TGG + chr2_3:16697040-16697059 None:intergenic 30.0%
! ACCTTTCAGGTATTAATACT+TGG - chr2_3:16697113-16697132 Msa0281300:CDS 30.0%
TCCAAGTATTAATACCTGAA+AGG + chr2_3:16697117-16697136 None:intergenic 30.0%
AACTCTTAGAGAAGTGAATA+TGG + chr2_3:16697154-16697173 None:intergenic 30.0%
TACTTAACAATAACAAGCTC+AGG - chr2_3:16697392-16697411 Msa0281300:CDS 30.0%
ATTTGTACGATGATAAACGT+AGG - chr2_3:16697501-16697520 Msa0281300:CDS 30.0%
TTTGTACGATGATAAACGTA+GGG - chr2_3:16697502-16697521 Msa0281300:CDS 30.0%
! GAGTATAAATTAGTTTGACC+GGG + chr2_3:16697610-16697629 None:intergenic 30.0%
! GGAGTATAAATTAGTTTGAC+CGG + chr2_3:16697611-16697630 None:intergenic 30.0%
ACACAACAGTCAAGTAAAAA+CGG + chr2_3:16697946-16697965 None:intergenic 30.0%
! TTTTTACTTGACTGTTGTGT+GGG - chr2_3:16697946-16697965 Msa0281300:intron 30.0%
! TTTTGTTAAATTTGGCGAAC+TGG - chr2_3:16698008-16698027 Msa0281300:intron 30.0%
GCTTGTAAAACTATCAGAAA+AGG - chr2_3:16698034-16698053 Msa0281300:intron 30.0%
TCTTGATATTTCAGCTGTTA+TGG - chr2_3:16698139-16698158 Msa0281300:intron 30.0%
CTTGATATTTCAGCTGTTAT+GGG - chr2_3:16698140-16698159 Msa0281300:intron 30.0%
!! CAAGAAGCACAAACTTTTTA+GGG + chr2_3:16698214-16698233 None:intergenic 30.0%
!! ACAAGAAGCACAAACTTTTT+AGG + chr2_3:16698215-16698234 None:intergenic 30.0%
CAATCTTGAGTATATGTACT+TGG + chr2_3:16698300-16698319 None:intergenic 30.0%
CAAGTACATATACTCAAGAT+TGG - chr2_3:16698298-16698317 Msa0281300:intron 30.0%
GATCTTAGATTTCTTACCAA+TGG + chr2_3:16698398-16698417 None:intergenic 30.0%
ATACAAGGGATTATATCTGT+AGG + chr2_3:16698577-16698596 None:intergenic 30.0%
! GGAAGTTATTGCATGATTTT+TGG - chr2_3:16698725-16698744 Msa0281300:intron 30.0%
GTACAAATGAAAGCTTCTTA+GGG + chr2_3:16698752-16698771 None:intergenic 30.0%
AGTACAAATGAAAGCTTCTT+AGG + chr2_3:16698753-16698772 None:intergenic 30.0%
ATCTTTACTTTCATGTTGCA+GGG - chr2_3:16698817-16698836 Msa0281300:intron 30.0%
! TATGTTCCTATCCTTTGAAA+GGG + chr2_3:16698955-16698974 None:intergenic 30.0%
TTATGTTCCTATCCTTTGAA+AGG + chr2_3:16698956-16698975 None:intergenic 30.0%
TTAATCTCTTGGAAGAGATT+TGG + chr2_3:16698990-16699009 None:intergenic 30.0%
ACTAACACAGATTAATCTCT+TGG + chr2_3:16699001-16699020 None:intergenic 30.0%
GATTTCTTGTTAGAGGTTTA+TGG - chr2_3:16699078-16699097 Msa0281300:intron 30.0%
GAGAGACTGTGGAAAAATAT+AGG - chr2_3:16692412-16692431 Msa0281300:three_prime_UTR 35.0%
! CACCATATTTGAGTTATGAC+TGG - chr2_3:16692472-16692491 Msa0281300:three_prime_UTR 35.0%
TGAGTTATGACTGGATATTG+TGG - chr2_3:16692481-16692500 Msa0281300:three_prime_UTR 35.0%
TTCTATACACTAAGTGGAGT+CGG + chr2_3:16692526-16692545 None:intergenic 35.0%
CAAAACTACAATGAGCTTTG+GGG + chr2_3:16692608-16692627 None:intergenic 35.0%
TGCATTTGGCCTAATACAAA+AGG - chr2_3:16692903-16692922 Msa0281300:intron 35.0%
GCATTTGGCCTAATACAAAA+GGG - chr2_3:16692904-16692923 Msa0281300:intron 35.0%
! ATTACTCCAAGTTGAAGTTC+AGG + chr2_3:16693363-16693382 None:intergenic 35.0%
TGTTGTTATAGACCTGTATG+TGG - chr2_3:16693649-16693668 Msa0281300:intron 35.0%
CGCCATTTCTAAATTGTCTT+AGG - chr2_3:16693868-16693887 Msa0281300:intron 35.0%
AAAAGTTAAATCTCAACCGC+TGG + chr2_3:16694014-16694033 None:intergenic 35.0%
TTTAGTGTCACCTGATAAGT+TGG - chr2_3:16694115-16694134 Msa0281300:intron 35.0%
ACTGACAAAATAGAATCCCT+TGG - chr2_3:16694209-16694228 Msa0281300:intron 35.0%
CTGACAAAATAGAATCCCTT+GGG - chr2_3:16694210-16694229 Msa0281300:intron 35.0%
TGACAAAATAGAATCCCTTG+GGG - chr2_3:16694211-16694230 Msa0281300:intron 35.0%
ATTGAACATGGAATAGTTGC+TGG - chr2_3:16694320-16694339 Msa0281300:CDS 35.0%
! AAATTGCTGTTACCCAAATC+TGG - chr2_3:16694401-16694420 Msa0281300:intron 35.0%
! CACATATTTTTCTCTCAACG+AGG - chr2_3:16694503-16694522 Msa0281300:CDS 35.0%
AGTTTGAATTCTGTGTAACC+AGG + chr2_3:16694680-16694699 None:intergenic 35.0%
! TATCTATCTGACCTTTTGAC+TGG + chr2_3:16694790-16694809 None:intergenic 35.0%
TGATAGGACTCTTATTGAGA+AGG - chr2_3:16694908-16694927 Msa0281300:intron 35.0%
AGTGTGAATTGAATTGTGCA+AGG - chr2_3:16695056-16695075 Msa0281300:intron 35.0%
GTGTGAATTGAATTGTGCAA+GGG - chr2_3:16695057-16695076 Msa0281300:intron 35.0%
GCAAGGGAAATTCTGTTATA+AGG - chr2_3:16695073-16695092 Msa0281300:intron 35.0%
AGGGAAATTCTGTTATAAGG+AGG - chr2_3:16695076-16695095 Msa0281300:intron 35.0%
TTCTGTTATAAGGAGGTTGA+AGG - chr2_3:16695083-16695102 Msa0281300:intron 35.0%
! AGAGAGAATTTGTTCTCTGA+AGG - chr2_3:16695150-16695169 Msa0281300:intron 35.0%
GGAAGAAAACAAAGCAACAA+CGG + chr2_3:16695255-16695274 None:intergenic 35.0%
!!! TAGAATTTTCTGGCTTGTGT+TGG - chr2_3:16695487-16695506 Msa0281300:intron 35.0%
!!! AGAATTTTCTGGCTTGTGTT+GGG - chr2_3:16695488-16695507 Msa0281300:intron 35.0%
TGTCAGTAAAGTAACCTCAA+AGG - chr2_3:16695520-16695539 Msa0281300:intron 35.0%
AATGAAAAATTCCTGGAAGC+AGG - chr2_3:16695799-16695818 Msa0281300:CDS 35.0%
GCATCAAGAACCAATTTACA+AGG + chr2_3:16695854-16695873 None:intergenic 35.0%
AAAACCATCTCTCTTCTCAA+AGG - chr2_3:16695973-16695992 Msa0281300:intron 35.0%
CTATGAAAGCTTCAAAGATG+TGG - chr2_3:16696005-16696024 Msa0281300:intron 35.0%
!! AGCAAAGATCTGTTGCTTTA+AGG + chr2_3:16696169-16696188 None:intergenic 35.0%
TGTCAATCAATTACAGTCAG+TGG + chr2_3:16696785-16696804 None:intergenic 35.0%
!! GTAGTTGACTTGCTAGATAT+TGG - chr2_3:16696928-16696947 Msa0281300:intron 35.0%
!! TTGACTTGCTAGATATTGGA+AGG - chr2_3:16696932-16696951 Msa0281300:intron 35.0%
!! GTACTGGATTTGCTGTTAAT+AGG - chr2_3:16696989-16697008 Msa0281300:intron 35.0%
GCCATGTTTCTTATTGAACA+TGG - chr2_3:16697036-16697055 Msa0281300:intron 35.0%
GATAAGGCAGTAACTAAGTT+TGG - chr2_3:16697078-16697097 Msa0281300:CDS 35.0%
!! TTGATTTGTAAGTTCGCTCA+GGG + chr2_3:16697267-16697286 None:intergenic 35.0%
!! ATTGATTTGTAAGTTCGCTC+AGG + chr2_3:16697268-16697287 None:intergenic 35.0%
! CTTTTATCCTCTTGCATAAG+TGG + chr2_3:16697298-16697317 None:intergenic 35.0%
AAAAGTCGTTGAGTTATGTG+TGG - chr2_3:16697428-16697447 Msa0281300:CDS 35.0%
TAATTCTTCAACTCTGGATC+AGG + chr2_3:16697533-16697552 None:intergenic 35.0%
AACTACCAGTTAACTAGTAG+AGG + chr2_3:16697636-16697655 None:intergenic 35.0%
!! TCTCTGGAATAAACAGTTAC+GGG + chr2_3:16697787-16697806 None:intergenic 35.0%
!! CTCTCTGGAATAAACAGTTA+CGG + chr2_3:16697788-16697807 None:intergenic 35.0%
! GTTTTTACTTGACTGTTGTG+TGG - chr2_3:16697945-16697964 Msa0281300:intron 35.0%
TATTTCAGCTGTTATGGGAA+TGG - chr2_3:16698145-16698164 Msa0281300:intron 35.0%
ATTTCAGCTGTTATGGGAAT+GGG - chr2_3:16698146-16698165 Msa0281300:intron 35.0%
TGCTTCTTGTTCTGACTTTA+AGG - chr2_3:16698225-16698244 Msa0281300:CDS 35.0%
GCTTCTTGTTCTGACTTTAA+GGG - chr2_3:16698226-16698245 Msa0281300:CDS 35.0%
! TATACTCAAGATTGGCTGAA+TGG - chr2_3:16698306-16698325 Msa0281300:intron 35.0%
GCTGAATGGTCAAAACTATA+TGG - chr2_3:16698320-16698339 Msa0281300:intron 35.0%
CAGATCCGTCATATATACAA+GGG + chr2_3:16698591-16698610 None:intergenic 35.0%
TGATATCCGAAAAAATGACG+AGG - chr2_3:16698668-16698687 Msa0281300:CDS 35.0%
!!! CTCAAACCTCGTCATTTTTT+CGG + chr2_3:16698677-16698696 None:intergenic 35.0%
GAAAAAATGACGAGGTTTGA+GGG - chr2_3:16698676-16698695 Msa0281300:CDS 35.0%
AAAAAATGACGAGGTTTGAG+GGG - chr2_3:16698677-16698696 Msa0281300:CDS 35.0%
CATCTTTACTTTCATGTTGC+AGG - chr2_3:16698816-16698835 Msa0281300:intron 35.0%
! GATTTTCTTTCCCCTTTCAA+AGG - chr2_3:16698941-16698960 Msa0281300:intron 35.0%
! ATGTTCCTATCCTTTGAAAG+GGG + chr2_3:16698954-16698973 None:intergenic 35.0%
GAAAATAGTCCAATATGCCG+AGG - chr2_3:16692385-16692404 Msa0281300:three_prime_UTR 40.0%
AATATAGGCCAAAACGTTGC+AGG - chr2_3:16692427-16692446 Msa0281300:three_prime_UTR 40.0%
! CAAAATCTCCTGCAACGTTT+TGG + chr2_3:16692438-16692457 None:intergenic 40.0%
GGCCTAATACAAAAGGGATT+AGG - chr2_3:16692910-16692929 Msa0281300:intron 40.0%
AATTCTTCCTGGCCATATAC+AGG - chr2_3:16692998-16693017 Msa0281300:intron 40.0%
ATTCTTCCTGGCCATATACA+GGG - chr2_3:16692999-16693018 Msa0281300:intron 40.0%
! CATTTCATCTTTTAGCGGGA+AGG - chr2_3:16693143-16693162 Msa0281300:intron 40.0%
CATGCCTGTTATAGGAAGAA+AGG + chr2_3:16693300-16693319 None:intergenic 40.0%
CTTCAACTTGGAGTAATTCC+TGG - chr2_3:16693366-16693385 Msa0281300:intron 40.0%
TTCACCATGATCTCTGGTAA+GGG + chr2_3:16693694-16693713 None:intergenic 40.0%
TTTCACCATGATCTCTGGTA+AGG + chr2_3:16693695-16693714 None:intergenic 40.0%
! AGACTTTTCACCATGATCTC+TGG + chr2_3:16693700-16693719 None:intergenic 40.0%
TTAAATCTCAACCGCTGGAT+AGG + chr2_3:16694009-16694028 None:intergenic 40.0%
TTGTAAAGACTAGCAACCCA+TGG + chr2_3:16694188-16694207 None:intergenic 40.0%
TCCTAATCTTAAGCACCCTT+TGG - chr2_3:16694283-16694302 Msa0281300:CDS 40.0%
!! ACCAAAGGGTGCTTAAGATT+AGG + chr2_3:16694287-16694306 None:intergenic 40.0%
CTGGCCACAACTAAATTAGA+AGG + chr2_3:16694771-16694790 None:intergenic 40.0%
TTTAGTTGTGGCCAGTCAAA+AGG - chr2_3:16694776-16694795 Msa0281300:intron 40.0%
TTGAATGTGACAGCTTGCAA+TGG + chr2_3:16694852-16694871 None:intergenic 40.0%
AGTTGTTAAGGCCCATAGTA+TGG - chr2_3:16694958-16694977 Msa0281300:intron 40.0%
!! AGCTTAGTTCTGTGGACAAT+AGG - chr2_3:16695173-16695192 Msa0281300:intron 40.0%
!!! GAATTTTCTGGCTTGTGTTG+GGG - chr2_3:16695489-16695508 Msa0281300:intron 40.0%
AAGGAACAGAATAGCTAAGC+AGG + chr2_3:16695582-16695601 None:intergenic 40.0%
GGTTCCTAGACAAGTGAAAA+AGG - chr2_3:16695690-16695709 Msa0281300:intron 40.0%
!! GCAACCTTTTTCACTTGTCT+AGG + chr2_3:16695697-16695716 None:intergenic 40.0%
GTGAAAAAGGTTGCAATCCT+TGG - chr2_3:16695703-16695722 Msa0281300:intron 40.0%
AAAAAGGTTGCAATCCTTGG+CGG - chr2_3:16695706-16695725 Msa0281300:intron 40.0%
GCAGGTGTTAACAGAGTTAA+AGG - chr2_3:16695817-16695836 Msa0281300:CDS 40.0%
TTACAAAGCCGTGTCAAGAA+AGG - chr2_3:16695925-16695944 Msa0281300:intron 40.0%
TACAAAGCCGTGTCAAGAAA+GGG - chr2_3:16695926-16695945 Msa0281300:intron 40.0%
TCATTTGCCCTTTCTTGACA+CGG + chr2_3:16695936-16695955 None:intergenic 40.0%
CAAGAAAGGGCAAATGACTA+AGG - chr2_3:16695939-16695958 Msa0281300:intron 40.0%
CATTCTCAATAACAGCCTGT+CGG + chr2_3:16696143-16696162 None:intergenic 40.0%
! GAGGAGGACAATACTTTTCA+AGG + chr2_3:16696194-16696213 None:intergenic 40.0%
CTTGCAAGTATACAATGAGG+AGG + chr2_3:16696210-16696229 None:intergenic 40.0%
AATCAGGTTCAAGTCGATTG+TGG + chr2_3:16696241-16696260 None:intergenic 40.0%
!! ACAATCGACTTGAACCTGAT+TGG - chr2_3:16696240-16696259 Msa0281300:intron 40.0%
AAATCTGAAGACCGGATTGT+TGG - chr2_3:16696273-16696292 Msa0281300:intron 40.0%
! ATTTTGGACCCCATTTCTTC+AGG - chr2_3:16696597-16696616 Msa0281300:intron 40.0%
AGCAAGTCAACTACTACTTG+CGG + chr2_3:16696922-16696941 None:intergenic 40.0%
GAAGATAAGGAAAACTCCAG+TGG - chr2_3:16696954-16696973 Msa0281300:intron 40.0%
GTACAATTTCCAACTACCAC+TGG + chr2_3:16696973-16696992 None:intergenic 40.0%
GTGGTAGTTGGAAATTGTAC+TGG - chr2_3:16696973-16696992 Msa0281300:intron 40.0%
ACATGGCTGCTTGTGTATAT+GGG + chr2_3:16697023-16697042 None:intergenic 40.0%
AACATGGCTGCTTGTGTATA+TGG + chr2_3:16697024-16697043 None:intergenic 40.0%
! AACTAAGTTTGGAATGCCCA+TGG - chr2_3:16697089-16697108 Msa0281300:CDS 40.0%
! ACTAAGTTTGGAATGCCCAT+GGG - chr2_3:16697090-16697109 Msa0281300:CDS 40.0%
TAATACCTGAAAGGTCCCAT+GGG + chr2_3:16697108-16697127 None:intergenic 40.0%
TTAATACCTGAAAGGTCCCA+TGG + chr2_3:16697109-16697128 None:intergenic 40.0%
!!! TTGATTGACCTCGTTGGTTT+TGG - chr2_3:16697202-16697221 Msa0281300:intron 40.0%
TATCCTCTTGCATAAGTGGA+AGG + chr2_3:16697294-16697313 None:intergenic 40.0%
ATGCAAGAGGATAAAAGAGC+AGG - chr2_3:16697301-16697320 Msa0281300:CDS 40.0%
GAGAAGTCTAGGAACATTTC+TGG - chr2_3:16697557-16697576 Msa0281300:intron 40.0%
!! GGATCCTAAGGTATTTTACC+CGG - chr2_3:16697589-16697608 Msa0281300:intron 40.0%
TTGACCGGGTAAAATACCTT+AGG + chr2_3:16697596-16697615 None:intergenic 40.0%
ACCAGTTAACTAGTAGAGGA+GGG + chr2_3:16697632-16697651 None:intergenic 40.0%
TACCAGTTAACTAGTAGAGG+AGG + chr2_3:16697633-16697652 None:intergenic 40.0%
AGAGATGATCTTCTTTCCTG+TGG - chr2_3:16698064-16698083 Msa0281300:intron 40.0%
TAACTGCAATGCCTTCATCA+AGG + chr2_3:16698109-16698128 None:intergenic 40.0%
ATGGATGAGACAAACCTGTA+AGG + chr2_3:16698179-16698198 None:intergenic 40.0%
AGGGTTAACTTAATTAGGGG+AGG - chr2_3:16698245-16698264 Msa0281300:CDS 40.0%
!! TTAGGGGAGGTATCATATTC+TGG - chr2_3:16698258-16698277 Msa0281300:CDS 40.0%
!! TAGGGGAGGTATCATATTCT+GGG - chr2_3:16698259-16698278 Msa0281300:CDS 40.0%
AGATCAGATACTTGCCTCTT+AGG - chr2_3:16698440-16698459 Msa0281300:intron 40.0%
GTACTAAAATGCAGCCTAAG+AGG + chr2_3:16698457-16698476 None:intergenic 40.0%
ACCAAACTGACAATGCAGTT+GGG + chr2_3:16698486-16698505 None:intergenic 40.0%
GCAGATCCGTCATATATACA+AGG + chr2_3:16698592-16698611 None:intergenic 40.0%
CGAAAAAATGACGAGGTTTG+AGG - chr2_3:16698675-16698694 Msa0281300:CDS 40.0%
TGATGGCAATGACATCAACA+TGG - chr2_3:16698704-16698723 Msa0281300:CDS 40.0%
TCTTTCCCCTTTCAAAGGAT+AGG - chr2_3:16698946-16698965 Msa0281300:intron 40.0%
TGTTACTGTAACAGGTGCGA+AGG - chr2_3:16692852-16692871 Msa0281300:intron 45.0%
GTTACTGTAACAGGTGCGAA+GGG - chr2_3:16692853-16692872 Msa0281300:intron 45.0%
! GGTGCGAAGGGAAAATTTTC+TGG - chr2_3:16692865-16692884 Msa0281300:intron 45.0%
! GCGAAGGGAAAATTTTCTGG+CGG - chr2_3:16692868-16692887 Msa0281300:intron 45.0%
TTCTTCCTGGCCATATACAG+GGG - chr2_3:16693000-16693019 Msa0281300:intron 45.0%
! GGCTTTGTATCCCCTGTATA+TGG + chr2_3:16693013-16693032 None:intergenic 45.0%
TATACAGGGGATACAAAGCC+TGG - chr2_3:16693013-16693032 Msa0281300:intron 45.0%
TATAACAGGCATGCACTGCA+CGG - chr2_3:16693307-16693326 Msa0281300:CDS 45.0%
GGTTTGCCTGAACTTCAACT+TGG - chr2_3:16693354-16693373 Msa0281300:intron 45.0%
CAACTTGGAGTAATTCCTGG+AGG - chr2_3:16693369-16693388 Msa0281300:intron 45.0%
TAGCACACACAACCACATAC+AGG + chr2_3:16693664-16693683 None:intergenic 45.0%
AAGTCCCTTACCAGAGATCA+TGG - chr2_3:16693687-16693706 Msa0281300:intron 45.0%
!! AAAGGCACTTGAGATGATGC+TGG - chr2_3:16693924-16693943 Msa0281300:intron 45.0%
GACCTCAAAGGCAATCAAAG+CGG - chr2_3:16694061-16694080 Msa0281300:CDS 45.0%
TTCCGCTTTGATTGCCTTTG+AGG + chr2_3:16694066-16694085 None:intergenic 45.0%
AGCGGAAGAAGCTCATAGTT+TGG - chr2_3:16694079-16694098 Msa0281300:CDS 45.0%
GCGGAAGAAGCTCATAGTTT+GGG - chr2_3:16694080-16694099 Msa0281300:CDS 45.0%
CGGAAGAAGCTCATAGTTTG+GGG - chr2_3:16694081-16694100 Msa0281300:CDS 45.0%
TATCTCTCTTGCTTCCCCAA+GGG + chr2_3:16694228-16694247 None:intergenic 45.0%
ATATCTCTCTTGCTTCCCCA+AGG + chr2_3:16694229-16694248 None:intergenic 45.0%
CCAAAACTCAAGCGCAAAAG+CGG - chr2_3:16694258-16694277 Msa0281300:intron 45.0%
CAAAACTCAAGCGCAAAAGC+GGG - chr2_3:16694259-16694278 Msa0281300:intron 45.0%
CTCTCAACGAGGAACATCTA+AGG - chr2_3:16694514-16694533 Msa0281300:CDS 45.0%
CTCAAAAGGGGAGAAGAAAC+AGG + chr2_3:16694568-16694587 None:intergenic 45.0%
!! TTCTTCTCCCCTTTTGAGAG+AGG - chr2_3:16694570-16694589 Msa0281300:CDS 45.0%
!! TCTTCTCCCCTTTTGAGAGA+GGG - chr2_3:16694571-16694590 Msa0281300:CDS 45.0%
CTTACTCTCACTCAGTCACA+TGG + chr2_3:16695028-16695047 None:intergenic 45.0%
TGTGACTGAGTGAGAGTAAG+AGG - chr2_3:16695028-16695047 Msa0281300:intron 45.0%
GAGGTTGAAGGAAGAGAGAA+AGG - chr2_3:16695095-16695114 Msa0281300:intron 45.0%
!! TCTGAAGGAGCTTAGTTCTG+TGG - chr2_3:16695165-16695184 Msa0281300:intron 45.0%
TCTAGGAACCAATCCACGAT+CGG + chr2_3:16695680-16695699 None:intergenic 45.0%
! GGTACCTTTGAGAAGAGAGA+TGG + chr2_3:16695980-16695999 None:intergenic 45.0%
AAGCTTCAAAGATGTGGACC+TGG - chr2_3:16696011-16696030 Msa0281300:intron 45.0%
AGATGTGGACCTGGTTATAG+AGG - chr2_3:16696020-16696039 Msa0281300:intron 45.0%
CCTCAAGTACCTCTATAACC+AGG + chr2_3:16696032-16696051 None:intergenic 45.0%
!! CCTGGTTATAGAGGTACTTG+AGG - chr2_3:16696029-16696048 Msa0281300:intron 45.0%
! GCTATTGGTTATGTTCCGAC+AGG - chr2_3:16696125-16696144 Msa0281300:intron 45.0%
! AGAAATGGGCTCCAACAATC+CGG + chr2_3:16696287-16696306 None:intergenic 45.0%
TTGTTGGAGCCCATTTCTTC+AGG - chr2_3:16696289-16696308 Msa0281300:intron 45.0%
AGAAGTGGCATAACATGTGC+CGG + chr2_3:16696871-16696890 None:intergenic 45.0%
GTACGTACAATCTCCAGAAG+TGG + chr2_3:16696886-16696905 None:intergenic 45.0%
AGGAAAACTCCAGTGGTAGT+TGG - chr2_3:16696961-16696980 Msa0281300:intron 45.0%
! TGAAGGTTGATTGACCTCGT+TGG - chr2_3:16697196-16697215 Msa0281300:intron 45.0%
GATCCTTCCACTTATGCAAG+AGG - chr2_3:16697288-16697307 Msa0281300:CDS 45.0%
!! GAACATTTCTGGTGTCTCTG+TGG - chr2_3:16697568-16697587 Msa0281300:intron 45.0%
TCCCTCCTCTACTAGTTAAC+TGG - chr2_3:16697628-16697647 Msa0281300:intron 45.0%
!! CCTTTTTAGTCGCCGTTTCA+AGG + chr2_3:16697911-16697930 None:intergenic 45.0%
CCTTGAAACGGCGACTAAAA+AGG - chr2_3:16697908-16697927 Msa0281300:intron 45.0%
CTTCTTTCCTGTGGTGAATG+AGG - chr2_3:16698073-16698092 Msa0281300:intron 45.0%
GATGAGACAAACCTGTAAGG+TGG + chr2_3:16698176-16698195 None:intergenic 45.0%
! ATATTCTGGGCTGACTCTCT+TGG - chr2_3:16698272-16698291 Msa0281300:intron 45.0%
CTTGCAGTCAAATAGGCAGA+GGG + chr2_3:16698359-16698378 None:intergenic 45.0%
TCTTGCAGTCAAATAGGCAG+AGG + chr2_3:16698360-16698379 None:intergenic 45.0%
TCTTACCAATGGAATCCCCT+TGG + chr2_3:16698387-16698406 None:intergenic 45.0%
ACCCAACTGCATTGTCAGTT+TGG - chr2_3:16698482-16698501 Msa0281300:intron 45.0%
GACCAAACTGACAATGCAGT+TGG + chr2_3:16698487-16698506 None:intergenic 45.0%
GTCAGTTTGGTCATTGCTGT+TGG - chr2_3:16698495-16698514 Msa0281300:intron 45.0%
! TTGGTCATTGCTGTTGGAGT+AGG - chr2_3:16698501-16698520 Msa0281300:intron 45.0%
! TCATTGCTGTTGGAGTAGGA+TGG - chr2_3:16698505-16698524 Msa0281300:intron 45.0%
AACACAAGGTCTCAGCTGAA+GGG + chr2_3:16698638-16698657 None:intergenic 45.0%
AAACACAAGGTCTCAGCTGA+AGG + chr2_3:16698639-16698658 None:intergenic 45.0%
!!! ATTATAATTTTAAATAGAAA+GGG + chr2_3:16698615-16698634 None:intergenic 5.0%
CTCTCTCTACCTCGGCATAT+TGG + chr2_3:16692397-16692416 None:intergenic 50.0%
TCCACAGTCTCTCTCTACCT+CGG + chr2_3:16692405-16692424 None:intergenic 50.0%
! ATCAAACGGCACTGAAGTCG+AGG - chr2_3:16692810-16692829 Msa0281300:intron 50.0%
TGTATCCCCTGTATATGGCC+AGG + chr2_3:16693008-16693027 None:intergenic 50.0%
TTTAGCGGGAAGGAAGCCTA+CGG - chr2_3:16693153-16693172 Msa0281300:intron 50.0%
! TGGGGGTTTAGAGCTTGCAA+TGG - chr2_3:16693204-16693223 Msa0281300:CDS 50.0%
GTGCAGTGCATGCCTGTTAT+AGG + chr2_3:16693308-16693327 None:intergenic 50.0%
CTTGGAGTAATTCCTGGAGG+TGG - chr2_3:16693372-16693391 Msa0281300:intron 50.0%
AATTCCTGGAGGTGGAGGTA+TGG - chr2_3:16693380-16693399 Msa0281300:intron 50.0%
CAGAGACTTCCTCGTCTTGT+TGG - chr2_3:16693895-16693914 Msa0281300:intron 50.0%
TCATCTCAAGTGCCTTTGCC+AGG + chr2_3:16693921-16693940 None:intergenic 50.0%
ATTTCAGCACGCCTATCCAG+CGG - chr2_3:16693995-16694014 Msa0281300:intron 50.0%
GCAGTGCTCACCAACTTATC+AGG + chr2_3:16694128-16694147 None:intergenic 50.0%
! CCACGATATCTAGAGCCCAT+TGG + chr2_3:16694154-16694173 None:intergenic 50.0%
!! CCAATGGGCTCTAGATATCG+TGG - chr2_3:16694151-16694170 Msa0281300:intron 50.0%
!! CCGCTTTTGCGCTTGAGTTT+TGG + chr2_3:16694261-16694280 None:intergenic 50.0%
AACCTTCAAGAGTCCTGCAC+GGG + chr2_3:16694348-16694367 None:intergenic 50.0%
CAACCTTCAAGAGTCCTGCA+CGG + chr2_3:16694349-16694368 None:intergenic 50.0%
AAGGCTTCAGCTTCCTGCAA+AGG + chr2_3:16694443-16694462 None:intergenic 50.0%
CAGGAAGCTGAAGCCTTTGA+AGG - chr2_3:16694446-16694465 Msa0281300:intron 50.0%
! AGCTGAAGCCTTTGAAGGAC+TGG - chr2_3:16694451-16694470 Msa0281300:intron 50.0%
! TGAAGCCTTTGAAGGACTGG+TGG - chr2_3:16694454-16694473 Msa0281300:intron 50.0%
GTCTCTCCCTCTCTCAAAAG+GGG + chr2_3:16694580-16694599 None:intergenic 50.0%
GGTCTCTCCCTCTCTCAAAA+GGG + chr2_3:16694581-16694600 None:intergenic 50.0%
AGGTCTCTCCCTCTCTCAAA+AGG + chr2_3:16694582-16694601 None:intergenic 50.0%
AATCCGGGTTCGCATCAATG+TGG - chr2_3:16695290-16695309 Msa0281300:CDS 50.0%
CAACCACATTGATGCGAACC+CGG + chr2_3:16695296-16695315 None:intergenic 50.0%
CAACATCTCCTCGCATGAAC+AGG - chr2_3:16695642-16695661 Msa0281300:CDS 50.0%
AATCCTTGGCGGAGGACTAA+TGG - chr2_3:16695717-16695736 Msa0281300:intron 50.0%
ATCCTTGGCGGAGGACTAAT+GGG - chr2_3:16695718-16695737 Msa0281300:intron 50.0%
CTCTGTTAACACCTGCTTCC+AGG + chr2_3:16695813-16695832 None:intergenic 50.0%
GAAGTGGCATAACATGTGCC+GGG + chr2_3:16696870-16696889 None:intergenic 50.0%
! GGCACATGTTATGCCACTTC+TGG - chr2_3:16696870-16696889 Msa0281300:intron 50.0%
ACAGGTGAAGCAACTCGCAA+AGG - chr2_3:16697473-16697492 Msa0281300:CDS 50.0%
TGGTGTCTCTGTGGATCCTA+AGG - chr2_3:16697577-16697596 Msa0281300:intron 50.0%
CGGCGACTAAAAAGGAAGTG+AGG - chr2_3:16697916-16697935 Msa0281300:intron 50.0%
CAATGCCTTCATCAAGGACC+CGG + chr2_3:16698103-16698122 None:intergenic 50.0%
! GAATGGGCTTTCCACCTTAC+AGG - chr2_3:16698162-16698181 Msa0281300:intron 50.0%
GGCAGCTCTTGCAGTCAAAT+AGG + chr2_3:16698366-16698385 None:intergenic 50.0%
TTTGACTGCAAGAGCTGCCA+AGG - chr2_3:16698367-16698386 Msa0281300:intron 50.0%
TTGACTGCAAGAGCTGCCAA+GGG - chr2_3:16698368-16698387 Msa0281300:intron 50.0%
! TTGGAGTAGGATGGTCTTGC+TGG - chr2_3:16698514-16698533 Msa0281300:intron 50.0%
! TGGAGTAGGATGGTCTTGCT+GGG - chr2_3:16698515-16698534 Msa0281300:intron 50.0%
GAGGTTTGAGGGGACAATGA+TGG - chr2_3:16698687-16698706 Msa0281300:CDS 50.0%
! TTTCATGTTGCAGGGTGCCT+CGG - chr2_3:16698825-16698844 Msa0281300:intron 50.0%
CCTACGGTTGCTGCCATTGA+CGG - chr2_3:16693169-16693188 Msa0281300:intron 55.0%
!! AAGCTCTAAACCCCCACCCA+AGG + chr2_3:16693200-16693219 None:intergenic 55.0%
!! CAAACCTAGCTGAGCACTGG+GGG + chr2_3:16693340-16693359 None:intergenic 55.0%
! GCAAACCTAGCTGAGCACTG+GGG + chr2_3:16693341-16693360 None:intergenic 55.0%
GGCAAACCTAGCTGAGCACT+GGG + chr2_3:16693342-16693361 None:intergenic 55.0%
AGGCAAACCTAGCTGAGCAC+TGG + chr2_3:16693343-16693362 None:intergenic 55.0%
GGAGTAATTCCTGGAGGTGG+AGG - chr2_3:16693375-16693394 Msa0281300:intron 55.0%
TCATCCATACCTCCACCTCC+AGG + chr2_3:16693387-16693406 None:intergenic 55.0%
! ACTTCCTCGTCTTGTTGGCC+TGG - chr2_3:16693900-16693919 Msa0281300:intron 55.0%
TTTGCCAGGCCAACAAGACG+AGG + chr2_3:16693907-16693926 None:intergenic 55.0%
! TCGTCTTGTTGGCCTGGCAA+AGG - chr2_3:16693906-16693925 Msa0281300:intron 55.0%
TAGCAACCCATGGTCGTCGA+CGG + chr2_3:16694178-16694197 None:intergenic 55.0%
ACCTTCAAGAGTCCTGCACG+GGG + chr2_3:16694347-16694366 None:intergenic 55.0%
! CTTTGAAGGACTGGTGGCGT+CGG - chr2_3:16694460-16694479 Msa0281300:intron 55.0%
TGAGAGAGGGAGAGACCTCA+AGG - chr2_3:16694584-16694603 Msa0281300:CDS 55.0%
TCCTCGCATGAACAGGTACC+TGG - chr2_3:16695649-16695668 Msa0281300:CDS 55.0%
CCTCGCATGAACAGGTACCT+GGG - chr2_3:16695650-16695669 Msa0281300:CDS 55.0%
CTCGCATGAACAGGTACCTG+GGG - chr2_3:16695651-16695670 Msa0281300:CDS 55.0%
AATCCACGATCGGTAACCCC+AGG + chr2_3:16695670-16695689 None:intergenic 55.0%
TGGGGTTACCGATCGTGGAT+TGG - chr2_3:16695669-16695688 Msa0281300:intron 55.0%
AAGGTTGCAATCCTTGGCGG+AGG - chr2_3:16695709-16695728 Msa0281300:intron 55.0%
CTATGGTTGCCTCTACAGCC+CGG - chr2_3:16696849-16696868 Msa0281300:intron 55.0%
TAACATGTGCCGGGCTGTAG+AGG + chr2_3:16696861-16696880 None:intergenic 55.0%
GAATGCCCATGGGACCTTTC+AGG - chr2_3:16697100-16697119 Msa0281300:CDS 55.0%
!!! TGACCTCGTTGGTTTTGGCG+TGG - chr2_3:16697207-16697226 Msa0281300:intron 55.0%
!!! GACCTCGTTGGTTTTGGCGT+GGG - chr2_3:16697208-16697227 Msa0281300:intron 55.0%
!!! ACCTCGTTGGTTTTGGCGTG+GGG - chr2_3:16697209-16697228 Msa0281300:intron 55.0%
TGACTGCAAGAGCTGCCAAG+GGG - chr2_3:16698369-16698388 Msa0281300:intron 55.0%
AGCTGCCAAGGGGATTCCAT+TGG - chr2_3:16698379-16698398 Msa0281300:CDS 55.0%
GCCGAGGTAGAGAGAGACTG+TGG - chr2_3:16692401-16692420 Msa0281300:three_prime_UTR 60.0%
CCGTCAATGGCAGCAACCGT+AGG + chr2_3:16693172-16693191 None:intergenic 60.0%
TGCCATTGACGGCCTTGCCT+TGG - chr2_3:16693180-16693199 Msa0281300:intron 60.0%
GCCATTGACGGCCTTGCCTT+GGG - chr2_3:16693181-16693200 Msa0281300:intron 60.0%
ACCCAAGGCAAGGCCGTCAA+TGG + chr2_3:16693185-16693204 None:intergenic 60.0%
ATTGACGGCCTTGCCTTGGG+TGG - chr2_3:16693184-16693203 Msa0281300:intron 60.0%
TTGACGGCCTTGCCTTGGGT+GGG - chr2_3:16693185-16693204 Msa0281300:intron 60.0%
CTAAACCCCCACCCAAGGCA+AGG + chr2_3:16693195-16693214 None:intergenic 60.0%
TCAACCCCCAGTGCTCAGCT+AGG - chr2_3:16693333-16693352 Msa0281300:intron 60.0%
! TGGTGAGCACTGCTCGCCAA+TGG - chr2_3:16694135-16694154 Msa0281300:intron 60.0%
! GGTGAGCACTGCTCGCCAAT+GGG - chr2_3:16694136-16694155 Msa0281300:intron 60.0%
ATAGTTGCTGGTCCCCGTGC+AGG - chr2_3:16694332-16694351 Msa0281300:CDS 60.0%
TCCCCGTGCAGGACTCTTGA+AGG - chr2_3:16694343-16694362 Msa0281300:CDS 60.0%
CGACGCCACCAGTCCTTCAA+AGG + chr2_3:16694462-16694481 None:intergenic 60.0%
CCCAGGTACCTGTTCATGCG+AGG + chr2_3:16695653-16695672 None:intergenic 60.0%
GTACCTGGGGTTACCGATCG+TGG - chr2_3:16695664-16695683 Msa0281300:intron 60.0%
AGCCCATTAGTCCTCCGCCA+AGG + chr2_3:16695723-16695742 None:intergenic 60.0%
!!! CCTCGTTGGTTTTGGCGTGG+GGG - chr2_3:16697210-16697229 Msa0281300:intron 60.0%
CTGTGGTGAATGAGGCCTGC+CGG - chr2_3:16698081-16698100 Msa0281300:intron 60.0%
TGTGGTGAATGAGGCCTGCC+GGG - chr2_3:16698082-16698101 Msa0281300:intron 60.0%
TGACTGCGCTTGATCCACCG+AGG + chr2_3:16698845-16698864 None:intergenic 60.0%
TGACGGCCTTGCCTTGGGTG+GGG - chr2_3:16693186-16693205 Msa0281300:intron 65.0%
TCGTGGACCGTCGACGACCA+TGG - chr2_3:16694168-16694187 Msa0281300:intron 65.0%
CGTGGACCGTCGACGACCAT+GGG - chr2_3:16694169-16694188 Msa0281300:intron 65.0%
!! GGCGGAGGACTAATGGGCTC+CGG - chr2_3:16695724-16695743 Msa0281300:intron 65.0%
CCCCCACGCCAAAACCAACG+AGG + chr2_3:16697213-16697232 None:intergenic 65.0%
CGGCAGGCCTCATTCACCAC+AGG + chr2_3:16698083-16698102 None:intergenic 65.0%
GCCTGCCGGGTCCTTGATGA+AGG - chr2_3:16698095-16698114 Msa0281300:intron 65.0%
GCCTTCATCAAGGACCCGGC+AGG + chr2_3:16698099-16698118 None:intergenic 65.0%
! CATGTTGCAGGGTGCCTCGG+TGG - chr2_3:16698828-16698847 Msa0281300:intron 65.0%
GACGGCCTTGCCTTGGGTGG+GGG - chr2_3:16693187-16693206 Msa0281300:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 16692382 16699216 16692382 ID=Msa0281300;Name=Msa0281300
chr2_3 mRNA 16692382 16699216 16692382 ID=Msa0281300-mRNA-1;Parent=Msa0281300;Name=Msa0281300-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.77|0.78|0.84|1|1|19|343|723
chr2_3 exon 16692382 16692760 16692382 ID=Msa0281300-mRNA-1:exon:6925;Parent=Msa0281300-mRNA-1
chr2_3 exon 16693198 16693336 16693198 ID=Msa0281300-mRNA-1:exon:6924;Parent=Msa0281300-mRNA-1
chr2_3 exon 16693415 16693563 16693415 ID=Msa0281300-mRNA-1:exon:6923;Parent=Msa0281300-mRNA-1
chr2_3 exon 16694000 16694121 16694000 ID=Msa0281300-mRNA-1:exon:6922;Parent=Msa0281300-mRNA-1
chr2_3 exon 16694276 16694397 16694276 ID=Msa0281300-mRNA-1:exon:6921;Parent=Msa0281300-mRNA-1
chr2_3 exon 16694477 16694731 16694477 ID=Msa0281300-mRNA-1:exon:6920;Parent=Msa0281300-mRNA-1
chr2_3 exon 16695288 16695451 16695288 ID=Msa0281300-mRNA-1:exon:6919;Parent=Msa0281300-mRNA-1
chr2_3 exon 16695557 16695678 16695557 ID=Msa0281300-mRNA-1:exon:6918;Parent=Msa0281300-mRNA-1
chr2_3 exon 16695760 16695934 16695760 ID=Msa0281300-mRNA-1:exon:6917;Parent=Msa0281300-mRNA-1
chr2_3 exon 16696482 16696520 16696482 ID=Msa0281300-mRNA-1:exon:6916;Parent=Msa0281300-mRNA-1
chr2_3 exon 16696669 16696776 16696669 ID=Msa0281300-mRNA-1:exon:6915;Parent=Msa0281300-mRNA-1
chr2_3 exon 16697063 16697149 16697063 ID=Msa0281300-mRNA-1:exon:6914;Parent=Msa0281300-mRNA-1
chr2_3 exon 16697234 16697536 16697234 ID=Msa0281300-mRNA-1:exon:6913;Parent=Msa0281300-mRNA-1
chr2_3 exon 16697653 16697708 16697653 ID=Msa0281300-mRNA-1:exon:6912;Parent=Msa0281300-mRNA-1
chr2_3 exon 16698202 16698283 16698202 ID=Msa0281300-mRNA-1:exon:6911;Parent=Msa0281300-mRNA-1
chr2_3 exon 16698373 16698440 16698373 ID=Msa0281300-mRNA-1:exon:6910;Parent=Msa0281300-mRNA-1
chr2_3 exon 16698525 16698578 16698525 ID=Msa0281300-mRNA-1:exon:6909;Parent=Msa0281300-mRNA-1
chr2_3 exon 16698667 16698732 16698667 ID=Msa0281300-mRNA-1:exon:6908;Parent=Msa0281300-mRNA-1
chr2_3 exon 16699192 16699216 16699192 ID=Msa0281300-mRNA-1:exon:6907;Parent=Msa0281300-mRNA-1
chr2_3 CDS 16699192 16699216 16699192 ID=Msa0281300-mRNA-1:cds;Parent=Msa0281300-mRNA-1
chr2_3 CDS 16698667 16698732 16698667 ID=Msa0281300-mRNA-1:cds;Parent=Msa0281300-mRNA-1
chr2_3 CDS 16698525 16698578 16698525 ID=Msa0281300-mRNA-1:cds;Parent=Msa0281300-mRNA-1
chr2_3 CDS 16698373 16698440 16698373 ID=Msa0281300-mRNA-1:cds;Parent=Msa0281300-mRNA-1
chr2_3 CDS 16698202 16698283 16698202 ID=Msa0281300-mRNA-1:cds;Parent=Msa0281300-mRNA-1
chr2_3 CDS 16697653 16697708 16697653 ID=Msa0281300-mRNA-1:cds;Parent=Msa0281300-mRNA-1
chr2_3 CDS 16697234 16697536 16697234 ID=Msa0281300-mRNA-1:cds;Parent=Msa0281300-mRNA-1
chr2_3 CDS 16697063 16697149 16697063 ID=Msa0281300-mRNA-1:cds;Parent=Msa0281300-mRNA-1
chr2_3 CDS 16696669 16696776 16696669 ID=Msa0281300-mRNA-1:cds;Parent=Msa0281300-mRNA-1
chr2_3 CDS 16696482 16696520 16696482 ID=Msa0281300-mRNA-1:cds;Parent=Msa0281300-mRNA-1
chr2_3 CDS 16695760 16695934 16695760 ID=Msa0281300-mRNA-1:cds;Parent=Msa0281300-mRNA-1
chr2_3 CDS 16695557 16695678 16695557 ID=Msa0281300-mRNA-1:cds;Parent=Msa0281300-mRNA-1
chr2_3 CDS 16695288 16695451 16695288 ID=Msa0281300-mRNA-1:cds;Parent=Msa0281300-mRNA-1
chr2_3 CDS 16694477 16694731 16694477 ID=Msa0281300-mRNA-1:cds;Parent=Msa0281300-mRNA-1
chr2_3 CDS 16694276 16694397 16694276 ID=Msa0281300-mRNA-1:cds;Parent=Msa0281300-mRNA-1
chr2_3 CDS 16694000 16694121 16694000 ID=Msa0281300-mRNA-1:cds;Parent=Msa0281300-mRNA-1
chr2_3 CDS 16693415 16693563 16693415 ID=Msa0281300-mRNA-1:cds;Parent=Msa0281300-mRNA-1
chr2_3 CDS 16693198 16693336 16693198 ID=Msa0281300-mRNA-1:cds;Parent=Msa0281300-mRNA-1
chr2_3 CDS 16692725 16692760 16692725 ID=Msa0281300-mRNA-1:cds;Parent=Msa0281300-mRNA-1
chr2_3 three_prime_UTR 16692382 16692724 16692382 ID=Msa0281300-mRNA-1:three_prime_utr;Parent=Msa0281300-mRNA-1
Gene Sequence

>Msa0281300

ATGGAAAATAGTCCAATATGCCGAGGTGCGAAGGGAAAATTTTCTGGCGGTTTTGATATTAATGCATTTGGCCTAATACAAAAGGGATTAGGGGATACAAAGCCTGGTTTGATATCAATAGAACTCCAAACTAATACTATAGAAGCGGGAAGGAAGCCTACGGTTGCTGCCATTGACGGCCTTGCCTTGGGTGGGGGTTTAGAGCTTGCAATGGCATGCACTGCACGGATATCAACCCCCAGTGCTCAGCTAGGTTTGCCTGAACTTCAACTTGGAGTAATTCCTGGAGGTGGAGGAACGCAGAGACTTCCTCGTCTTGTTGGCCTGGCAAAGGCACTTGAGATGATGCTGACCTCAAAGGCAATCAAAGCGGAAGAAGCTCATAGTTTGGGGCTTGTAGACGTTTTAGTGTCACCTGATAAGTTGGTGAGCACTGCTCGCCAATGGGCTCTAGATATCGTGGACCGTCGACGACCATGGGTTGCTAGTCTTTACAAGACTGACAAAATAGAATCCCTTGGGGAAGCAAGAGAGATATTGAAGTTTGCCAAAACTCAAGCGCAAAAGCGGGCTCCTAATCTTAAGCACCCTTTGGTTTGTATTGATGTTATTGAACATGGAATAGTTGCTGGTCCCCGTGCAGGACTCTTGAAGGAAGCTGAAGCCTTTGAAGGACTGGTGGCGTCGGATACTTGCAAGAGCTTGATTCACATATTTTTCTCTCAACGAGGAACATCTAAGGTTTATAAAAATGTTAAAAGCGAGAGACCATTGCAAGCTGTCACATTCAAAGAGAGCAACTGTAGTTCAACAAGATATATCATGTGTGATAGGACTCTTATTGAGAAGGGAAATTCTGTTATAAGGAGGTTGAAGGAAGAGAGAAAGGTACCTGGGGTTACCGATCGTGGATTGGTTCCTAGACAAGTGAAAAAGGTTGCAATCCTTGGCGGAGGACTAATGGGCTCCGGAATAGCAACTGCTTTAATTCTTGGTAACTATCCTGTTATCTTGAAAGAAGTAAATGAAAAATTCCTGGAAGCAGGTGTTAACAGAGTTAAAGCAAATTTACAAAGCCGTGTCAAGAAAGGGCAAATGACTAAGGAAAAATTTGAAAAAACCATCTCTCTTCTCAAAGGTACCATTGACTATGAAAGCTTCAAAGATGTGGACCTGGTTATAGAGGCTGTTATTGAGAATGTTGCCTTAAAGCAACAGATCTTTGCTGACCTTGAAAAGTATTGTCCTCCTCATTGTATACTTGCAAGTAACACTTCCACAATCGACTTGAACCTGATTGGAAAGAATACTAAATCTGAAGACCGGATTGTTGGAGCCCATTTCTTCAGCCCGGCACATGTTATGCCACTTCTGGAGATTGTACGTACTAAACAGACATCTCCGCAAGTAGTAGTTGACTTGCTAGATATTGGAAGGAAGATAAGGAAAACTCCAGTGGTAGTTGGAAATTGTACTGGATTTGCTGTTAATAGGATGTTCTTCCCATATACACAAGCAGCCATGTTTCTTATTGAACATGGTGCAGATGTTTATCAAATTGATAAGGCAGTAACTAAGTTTGGAATGCCCATGGGACCTTTCAGGTTGATTGACCTCGTTGGTTTTGGCGTGGGGGTTGCAACTGCCATGCAATTTATTGAGAATTTCCCTGAGCGAACTTACAAATCAATGATCCTTCCACTTATGCAAGAGGATAAAAGAGCAGGTGAAGCAACTCGCAAAGGATTTTATTTGTACGATGATAAACGTAGGGCTAATCCTGATCCAGAGTTGAAGAATTATATTGAGAAGTCTAGGAACATTTCTGGTGTCTCTGTGGATCCTAAGCTTGTAAAACTATCAGAAAAGGACATCATAGAGATGATCTTCTTTCCTGTGGTGAATGAGGCCTGCCGGGTCCTTGATGAAGGCATTGCAGTTAAAGCAGCAGATCTTGATATTTCAGCTGTTATGGGAATGGGCTTTCCACCTTACAGGGGAGGTATCATATTCTGGGCTGACTCTCTTGGATCCAAGTACATATACTCAAGATTGGCTGAATGGTCAAAACTATATGGAGAATTCTTCAAGCCCTCTGCCTATTTGACTGCAAGAGCTGCCAAGGGGATTCCATTGGGTGCCTCGGTGGATCAAGCGCAGTCACGATTATAA

Protein sequence

>Msa0281300

MENSPICRGAKGKFSGGFDINAFGLIQKGLGDTKPGLISIELQTNTIEAGRKPTVAAIDGLALGGGLELAMACTARISTPSAQLGLPELQLGVIPGGGGTQRLPRLVGLAKALEMMLTSKAIKAEEAHSLGLVDVLVSPDKLVSTARQWALDIVDRRRPWVASLYKTDKIESLGEAREILKFAKTQAQKRAPNLKHPLVCIDVIEHGIVAGPRAGLLKEAEAFEGLVASDTCKSLIHIFFSQRGTSKVYKNVKSERPLQAVTFKESNCSSTRYIMCDRTLIEKGNSVIRRLKEERKVPGVTDRGLVPRQVKKVAILGGGLMGSGIATALILGNYPVILKEVNEKFLEAGVNRVKANLQSRVKKGQMTKEKFEKTISLLKGTIDYESFKDVDLVIEAVIENVALKQQIFADLEKYCPPHCILASNTSTIDLNLIGKNTKSEDRIVGAHFFSPAHVMPLLEIVRTKQTSPQVVVDLLDIGRKIRKTPVVVGNCTGFAVNRMFFPYTQAAMFLIEHGADVYQIDKAVTKFGMPMGPFRLIDLVGFGVGVATAMQFIENFPERTYKSMILPLMQEDKRAGEATRKGFYLYDDKRRANPDPELKNYIEKSRNISGVSVDPKLVKLSEKDIIEMIFFPVVNEACRVLDEGIAVKAADLDISAVMGMGFPPYRGGIIFWADSLGSKYIYSRLAEWSKLYGEFFKPSAYLTARAAKGIPLGASVDQAQSRL*