Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0281680 | XP_024633185.1 | 97.931 | 145 | 3 | 0 | 1 | 145 | 1 | 145 | 3.49e-95 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0281680 | A0A396J570 | 97.931 | 145 | 3 | 0 | 1 | 145 | 1 | 145 | 1.67e-95 | 281 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0200620 | Msa0281680 | 0.831069 | 2.056470e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0281680 | MtrunA17_Chr2g0296411 | 97.931 | 145 | 3 | 0 | 1 | 145 | 1 | 145 | 3.21e-99 | 281 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0281680 | AT5G18540.3 | 70.476 | 105 | 30 | 1 | 6 | 109 | 8 | 112 | 3.03e-41 | 134 |
| Msa0281680 | AT5G18540.4 | 70.476 | 105 | 30 | 1 | 6 | 109 | 8 | 112 | 3.03e-41 | 134 |
| Msa0281680 | AT5G18540.2 | 62.595 | 131 | 44 | 2 | 6 | 131 | 8 | 138 | 3.37e-36 | 122 |
| Msa0281680 | AT5G18540.1 | 60.606 | 132 | 45 | 2 | 6 | 130 | 8 | 139 | 3.69e-36 | 122 |
Find 49 sgRNAs with CRISPR-Local
Find 305 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTCGCCATTTCGAATT+TGG | 0.064979 | 2_3:-17275552 | None:intergenic |
| CACGACTGTCTTGTGAAATT+TGG | 0.081032 | 2_3:+17278934 | Msa0281680:three_prime_UTR |
| ATTAAACAACTGTGTTTCTT+AGG | 0.186893 | 2_3:+17278888 | Msa0281680:three_prime_UTR |
| TCTTTCGCCATTTCGAATTT+GGG | 0.247508 | 2_3:-17275551 | None:intergenic |
| GACAAATAAAGCAGCGGCTT+TGG | 0.324493 | 2_3:+17275849 | Msa0281680:CDS |
| ACGACTGTCTTGTGAAATTT+GGG | 0.341775 | 2_3:+17278935 | Msa0281680:three_prime_UTR |
| CTTAGAAGCGTACCTGGGTT+TGG | 0.342468 | 2_3:-17275660 | None:intergenic |
| GGAATTAAATGTGACCCTAT+TGG | 0.346127 | 2_3:+17278976 | Msa0281680:three_prime_UTR |
| CGTACCTGGGTTTGGATTTG+TGG | 0.348582 | 2_3:-17275652 | None:intergenic |
| ATTTAAGAAATTAATTCAAT+AGG | 0.349289 | 2_3:+17278854 | Msa0281680:three_prime_UTR |
| AACATGGATAAATTTGAAAT+AGG | 0.361879 | 2_3:-17279114 | None:intergenic |
| TTAATAGATGCCAATCCATT+AGG | 0.362024 | 2_3:-17275901 | None:intergenic |
| GGGTTTGGATTTGTGGGAGT+TGG | 0.365182 | 2_3:-17275645 | None:intergenic |
| ATATATCAATAAATACCAAT+AGG | 0.365848 | 2_3:-17278991 | None:intergenic |
| TTTGTGGGAGTTGGGAAGAA+TGG | 0.372176 | 2_3:-17275636 | None:intergenic |
| ACTTGTAGAAACAGCCTGTT+TGG | 0.376483 | 2_3:-17275956 | None:intergenic |
| GCTGCTTTATTTGTCGCAAC+AGG | 0.376882 | 2_3:-17275841 | None:intergenic |
| TTGTGGGAGTTGGGAAGAAT+GGG | 0.380091 | 2_3:-17275635 | None:intergenic |
| GGTTTGGATTTGTGGGAGTT+GGG | 0.384004 | 2_3:-17275644 | None:intergenic |
| ACAGCAATTTCAAGTAGATC+AGG | 0.393490 | 2_3:-17275925 | None:intergenic |
| AAAATTGTTATTCATTCAAA+TGG | 0.399188 | 2_3:+17278821 | Msa0281680:three_prime_UTR |
| CACATTTAATTCCTAAGAAA+AGG | 0.400890 | 2_3:-17278966 | None:intergenic |
| TGGGGCAGATTGGCTCATCC+TGG | 0.415451 | 2_3:+17275814 | Msa0281680:intron |
| AGGATGACAAAGATGCAGAT+AGG | 0.440000 | 2_3:+17278787 | Msa0281680:exon |
| GTCCGGCATGTAGTATCCTT+TGG | 0.446901 | 2_3:+17278454 | Msa0281680:CDS |
| TATATCAATAAATACCAATA+GGG | 0.450665 | 2_3:-17278990 | None:intergenic |
| AAGAAATTGTTTACATTGGT+AGG | 0.451815 | 2_3:+17279066 | Msa0281680:three_prime_UTR |
| CTTTCGCCATTTCGAATTTG+GGG | 0.463094 | 2_3:-17275550 | None:intergenic |
| GATGAACGACGCGCACTTCG+TGG | 0.465818 | 2_3:+17275593 | Msa0281680:CDS |
| GTACCTGGGTTTGGATTTGT+GGG | 0.472838 | 2_3:-17275651 | None:intergenic |
| AGGAAGTTGAAGGAACCTAA+TGG | 0.473777 | 2_3:+17275886 | Msa0281680:CDS |
| ATGGATAAATTTGAAATAGG+AGG | 0.489795 | 2_3:-17279111 | None:intergenic |
| TTTGAAGAAATTGTTTACAT+TGG | 0.492624 | 2_3:+17279062 | Msa0281680:three_prime_UTR |
| AAATGATCTCCCTGCGGTAA+AGG | 0.494996 | 2_3:+17278504 | Msa0281680:CDS |
| TTCTTGCATTCCTTTACCGC+AGG | 0.498619 | 2_3:-17278514 | None:intergenic |
| CAGCAATTTCAAGTAGATCA+GGG | 0.537601 | 2_3:-17275924 | None:intergenic |
| GTTGAAGGAACCTAATGGAT+TGG | 0.539737 | 2_3:+17275891 | Msa0281680:CDS |
| TTTGTCGCAACAGGTCCACC+AGG | 0.551614 | 2_3:-17275832 | None:intergenic |
| GGATGACAAAGATGCAGATA+GGG | 0.553491 | 2_3:+17278788 | Msa0281680:exon |
| GGCAGATTGGCTCATCCTGG+TGG | 0.554276 | 2_3:+17275817 | Msa0281680:intron |
| GAGTTGGGAAGAATGGGAAG+AGG | 0.558997 | 2_3:-17275629 | None:intergenic |
| TTTCGCCATTTCGAATTTGG+GGG | 0.560025 | 2_3:-17275549 | None:intergenic |
| TCTTGCATTCCTTTACCGCA+GGG | 0.595427 | 2_3:-17278513 | None:intergenic |
| CGACTCAGATGCAAGTGAAG+AGG | 0.603099 | 2_3:+17278477 | Msa0281680:CDS |
| ACTTGCATCTGAGTCGCCAA+AGG | 0.613909 | 2_3:-17278470 | None:intergenic |
| CGCCAAAGGATACTACATGC+CGG | 0.622715 | 2_3:-17278456 | None:intergenic |
| ACTCCCACAAATCCAAACCC+AGG | 0.684667 | 2_3:+17275648 | Msa0281680:CDS |
| TGTTGCGACAAATAAAGCAG+CGG | 0.710999 | 2_3:+17275843 | Msa0281680:CDS |
| GGAACAAAATGATCTCCCTG+CGG | 0.782854 | 2_3:+17278498 | Msa0281680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTTTTTTTAAAA+AGG | + | chr2_3:17275397-17275416 | Msa0281680:five_prime_UTR | 0.0% |
| !! | ATTTAAGAAATTAATTCAAT+AGG | + | chr2_3:17278854-17278873 | Msa0281680:three_prime_UTR | 10.0% |
| !!! | TTCTTTTTGTTCATTTTATT+TGG | + | chr2_3:17276028-17276047 | Msa0281680:intron | 15.0% |
| !! | GTTATTATTAATATGTAAGT+CGG | + | chr2_3:17276343-17276362 | Msa0281680:intron | 15.0% |
| !!! | TAAGAGAATAATCTTTTTTT+AGG | - | chr2_3:17276584-17276603 | None:intergenic | 15.0% |
| !! | AAGATTATTCTCTTATATTT+AGG | + | chr2_3:17276589-17276608 | Msa0281680:intron | 15.0% |
| !! | AATATAAGAAATGTTATGTT+TGG | + | chr2_3:17276645-17276664 | Msa0281680:intron | 15.0% |
| !! | ATATAAGAAATGTTATGTTT+GGG | + | chr2_3:17276646-17276665 | Msa0281680:intron | 15.0% |
| !!! | TTTGAATAAACAAATTTTGT+GGG | - | chr2_3:17277516-17277535 | None:intergenic | 15.0% |
| !!! | ATTTGAATAAACAAATTTTG+TGG | - | chr2_3:17277517-17277536 | None:intergenic | 15.0% |
| !!! | CTAACATTTTTTTTTTGAAA+CGG | - | chr2_3:17278250-17278269 | None:intergenic | 15.0% |
| !!! | AAAATTGTTATTCATTCAAA+TGG | + | chr2_3:17278821-17278840 | Msa0281680:three_prime_UTR | 15.0% |
| !! | TATATCAATAAATACCAATA+GGG | - | chr2_3:17278993-17279012 | None:intergenic | 15.0% |
| !! | ATATATCAATAAATACCAAT+AGG | - | chr2_3:17278994-17279013 | None:intergenic | 15.0% |
| !!! | AAAGAAATAGTTAATTTGAC+CGG | - | chr2_3:17275444-17275463 | None:intergenic | 20.0% |
| !! | AAATCAAAAATTTCACCAAT+TGG | - | chr2_3:17275730-17275749 | None:intergenic | 20.0% |
| !!! | AATTTTTGATTTTGAATTCG+TGG | + | chr2_3:17275738-17275757 | Msa0281680:intron | 20.0% |
| !!! | ATTTTTGATTTTGAATTCGT+GGG | + | chr2_3:17275739-17275758 | Msa0281680:intron | 20.0% |
| !!! | TGTAATTCCTTTAATTTTAG+TGG | + | chr2_3:17275768-17275787 | Msa0281680:intron | 20.0% |
| !!! | GTAATTCCTTTAATTTTAGT+GGG | + | chr2_3:17275769-17275788 | Msa0281680:intron | 20.0% |
| !!! | TGTTTTTTTAGTGATTATTG+TGG | + | chr2_3:17276124-17276143 | Msa0281680:intron | 20.0% |
| !! | ATATATGATACAATGTGTTT+AGG | + | chr2_3:17276211-17276230 | Msa0281680:intron | 20.0% |
| !! | TATATGATACAATGTGTTTA+GGG | + | chr2_3:17276212-17276231 | Msa0281680:intron | 20.0% |
| !!! | TCTTCTCTTAATCAAATTTT+CGG | - | chr2_3:17276296-17276315 | None:intergenic | 20.0% |
| !! | AATTTGATTAAGAGAAGAAA+TGG | + | chr2_3:17276298-17276317 | Msa0281680:intron | 20.0% |
| !! | ATGAATCTTCTCTAATATTT+AGG | - | chr2_3:17276496-17276515 | None:intergenic | 20.0% |
| !!! | TTAGAGAAGATTCATTTTTT+AGG | + | chr2_3:17276501-17276520 | Msa0281680:intron | 20.0% |
| !! | GTATAATATATATTGTGTCT+TGG | + | chr2_3:17276820-17276839 | Msa0281680:intron | 20.0% |
| !!! | TTTCCTTTTGAATAATCTTA+AGG | + | chr2_3:17277097-17277116 | Msa0281680:intron | 20.0% |
| !!! | TTGAATAAACAAATTTTGTG+GGG | - | chr2_3:17277515-17277534 | None:intergenic | 20.0% |
| !!! | GACATAAAATATTAGCTTAA+TGG | - | chr2_3:17278344-17278363 | None:intergenic | 20.0% |
| !! | GAAGAAAAATAAAAAACGAA+AGG | + | chr2_3:17278561-17278580 | Msa0281680:CDS | 20.0% |
| !!! | ATTTTCAGTTTATTTCTTTC+AGG | + | chr2_3:17278751-17278770 | Msa0281680:intron | 20.0% |
| !!! | ATTGATATATTTTTAGACAG+AGG | + | chr2_3:17279004-17279023 | Msa0281680:three_prime_UTR | 20.0% |
| !! | TTTGAAGAAATTGTTTACAT+TGG | + | chr2_3:17279062-17279081 | Msa0281680:three_prime_UTR | 20.0% |
| !!! | TTTTTTAAAAAGGACAGAGA+TGG | + | chr2_3:17275407-17275426 | Msa0281680:intron | 25.0% |
| !!! | TGATTTGGATTTGTGATTTT+TGG | + | chr2_3:17275794-17275813 | Msa0281680:intron | 25.0% |
| !! | GATTTGGATTTGTGATTTTT+GGG | + | chr2_3:17275795-17275814 | Msa0281680:intron | 25.0% |
| !! | ATTTGGATTTGTGATTTTTG+GGG | + | chr2_3:17275796-17275815 | Msa0281680:intron | 25.0% |
| !!! | TTGGTTATTAATTGATGATG+TGG | + | chr2_3:17276047-17276066 | Msa0281680:intron | 25.0% |
| ! | ATATATCTGTATCAGATACT+CGG | - | chr2_3:17276197-17276216 | None:intergenic | 25.0% |
| ! | TAATATGTAAGTCGGAAAAT+AGG | + | chr2_3:17276351-17276370 | Msa0281680:intron | 25.0% |
| ! | AATATGTAAGTCGGAAAATA+GGG | + | chr2_3:17276352-17276371 | Msa0281680:intron | 25.0% |
| ! | ATAGGGATTAATAGTTGAAT+AGG | + | chr2_3:17276369-17276388 | Msa0281680:intron | 25.0% |
| !! | ATGTGTGTTTTTCTGTTATT+GGG | + | chr2_3:17276404-17276423 | Msa0281680:intron | 25.0% |
| !! | TATTCTCTTATATTTAGGAC+CGG | + | chr2_3:17276594-17276613 | Msa0281680:intron | 25.0% |
| ! | TTGTTTGTAGTATTAGAATG+AGG | + | chr2_3:17276783-17276802 | Msa0281680:intron | 25.0% |
| ! | TGTTTGTAGTATTAGAATGA+GGG | + | chr2_3:17276784-17276803 | Msa0281680:intron | 25.0% |
| !! | AATAATCTTAAGGAGGTTTT+GGG | + | chr2_3:17277107-17277126 | Msa0281680:intron | 25.0% |
| ! | AAAATCAATGTATTCGTTGT+TGG | + | chr2_3:17277198-17277217 | Msa0281680:intron | 25.0% |
| ! | TTGTTATCCTTGTATTTGTT+CGG | + | chr2_3:17278144-17278163 | Msa0281680:intron | 25.0% |
| ! | TAAAAAAATCCATATCTGAC+AGG | - | chr2_3:17278284-17278303 | None:intergenic | 25.0% |
| ! | AAAATTGAAGAGAATCACAA+AGG | - | chr2_3:17278406-17278425 | None:intergenic | 25.0% |
| !! | TTGTGATTCTCTTCAATTTT+AGG | + | chr2_3:17278406-17278425 | Msa0281680:intron | 25.0% |
| ! | CTAATTCAAAAAGAAATGTC+CGG | + | chr2_3:17278437-17278456 | Msa0281680:CDS | 25.0% |
| !!! | TTGACATTGTAAAAGTATCT+AGG | - | chr2_3:17278617-17278636 | None:intergenic | 25.0% |
| ! | ATTAAACAACTGTGTTTCTT+AGG | + | chr2_3:17278888-17278907 | Msa0281680:three_prime_UTR | 25.0% |
| ! | CACATTTAATTCCTAAGAAA+AGG | - | chr2_3:17278969-17278988 | None:intergenic | 25.0% |
| ! | AAGAAATTGTTTACATTGGT+AGG | + | chr2_3:17279066-17279085 | Msa0281680:three_prime_UTR | 25.0% |
| !! | ATGGATAAATTTGAAATAGG+AGG | - | chr2_3:17279114-17279133 | None:intergenic | 25.0% |
| GTTAGTTATGAAGCGTATAA+TGG | - | chr2_3:17275699-17275718 | None:intergenic | 30.0% | |
| CAAAAATTTCACCAATTGGT+GGG | - | chr2_3:17275726-17275745 | None:intergenic | 30.0% | |
| TCAAAAATTTCACCAATTGG+TGG | - | chr2_3:17275727-17275746 | None:intergenic | 30.0% | |
| ATCAGACCCACTAAAATTAA+AGG | - | chr2_3:17275778-17275797 | None:intergenic | 30.0% | |
| !! | TAATTTTAGTGGGTCTGATT+TGG | + | chr2_3:17275779-17275798 | Msa0281680:intron | 30.0% |
| TTAATAGATGCCAATCCATT+AGG | - | chr2_3:17275904-17275923 | None:intergenic | 30.0% | |
| !! | TTAATTGATGATGTGGTGAT+TGG | + | chr2_3:17276054-17276073 | Msa0281680:intron | 30.0% |
| TAGTGATTATTGTGGAATGA+TGG | + | chr2_3:17276132-17276151 | Msa0281680:intron | 30.0% | |
| AGTGATTATTGTGGAATGAT+GGG | + | chr2_3:17276133-17276152 | Msa0281680:intron | 30.0% | |
| GTATCAAATTATCATAAGCC+AGG | - | chr2_3:17276164-17276183 | None:intergenic | 30.0% | |
| ! | AAATTTTCGGTCATCATCAA+TGG | - | chr2_3:17276283-17276302 | None:intergenic | 30.0% |
| ! | CATGTGTGTTTTTCTGTTAT+TGG | + | chr2_3:17276403-17276422 | Msa0281680:intron | 30.0% |
| ! | TGTTTTTCTGTTATTGGGTT+TGG | + | chr2_3:17276409-17276428 | Msa0281680:intron | 30.0% |
| ! | TCTTCTCTAATATTTAGGAC+CGG | - | chr2_3:17276491-17276510 | None:intergenic | 30.0% |
| AGTGATTTATGAGTGTATTG+TGG | + | chr2_3:17276680-17276699 | Msa0281680:intron | 30.0% | |
| AAAAGGAAAAGAGAAAAGAG+AGG | - | chr2_3:17277086-17277105 | None:intergenic | 30.0% | |
| CCTCCTTAAGATTATTCAAA+AGG | - | chr2_3:17277103-17277122 | None:intergenic | 30.0% | |
| ! | CCTTTTGAATAATCTTAAGG+AGG | + | chr2_3:17277100-17277119 | Msa0281680:intron | 30.0% |
| ! | GAATAATCTTAAGGAGGTTT+TGG | + | chr2_3:17277106-17277125 | Msa0281680:intron | 30.0% |
| ! | ATAATCTTAAGGAGGTTTTG+GGG | + | chr2_3:17277108-17277127 | Msa0281680:intron | 30.0% |
| !! | GTTTTATTAGACCCTAGATT+GGG | + | chr2_3:17277229-17277248 | Msa0281680:intron | 30.0% |
| ATTCAAATGCCATGTTTGAT+TGG | + | chr2_3:17277529-17277548 | Msa0281680:intron | 30.0% | |
| TTTGGAAGTCTATAAACGAT+CGG | + | chr2_3:17277600-17277619 | Msa0281680:intron | 30.0% | |
| ATTGTCTGAATAGGTAAGTT+TGG | + | chr2_3:17277753-17277772 | Msa0281680:intron | 30.0% | |
| CTCTCTTCAATTGAATTTGT+TGG | + | chr2_3:17278363-17278382 | Msa0281680:intron | 30.0% | |
| ! | TGATTCTCTTCAATTTTAGG+TGG | + | chr2_3:17278409-17278428 | Msa0281680:intron | 30.0% |
| ! | TCACTACTTGTTAATGTGAT+TGG | + | chr2_3:17278584-17278603 | Msa0281680:intron | 30.0% |
| TCAACAACTAGCATGATTTA+TGG | + | chr2_3:17278633-17278652 | Msa0281680:intron | 30.0% | |
| ! | TTTCAGGATGTGATACTTTT+AGG | + | chr2_3:17278767-17278786 | Msa0281680:intron | 30.0% |
| AAAAAGAGAGAAACGCACAA+CGG | + | chr2_3:17275520-17275539 | Msa0281680:five_prime_UTR | 35.0% | |
| AATTTCCCCCAAATTCGAAA+TGG | + | chr2_3:17275544-17275563 | Msa0281680:exon | 35.0% | |
| TCTTTCGCCATTTCGAATTT+GGG | - | chr2_3:17275554-17275573 | None:intergenic | 35.0% | |
| ! | ATGAAGCGTATAATGGAAAG+AGG | - | chr2_3:17275692-17275711 | None:intergenic | 35.0% |
| !! | CTTTGGCTAAATTTTTGGAG+AGG | + | chr2_3:17275866-17275885 | Msa0281680:CDS | 35.0% |
| !! | ATTTTTGGAGAGGAAGTTGA+AGG | + | chr2_3:17275876-17275895 | Msa0281680:CDS | 35.0% |
| ! | CAGCAATTTCAAGTAGATCA+GGG | - | chr2_3:17275927-17275946 | None:intergenic | 35.0% |
| ! | ACAGCAATTTCAAGTAGATC+AGG | - | chr2_3:17275928-17275947 | None:intergenic | 35.0% |
| TGCTGTTAAAAATGCCAAAC+AGG | + | chr2_3:17275942-17275961 | Msa0281680:CDS | 35.0% | |
| TAAGAGAAGAAATGGTGAAC+TGG | + | chr2_3:17276306-17276325 | Msa0281680:intron | 35.0% | |
| ! | GGAGTATTAAACATGGCAAA+AGG | - | chr2_3:17276466-17276485 | None:intergenic | 35.0% |
| AAAACATTTCTTACTCCCTC+CGG | - | chr2_3:17276616-17276635 | None:intergenic | 35.0% | |
| TATGAGTGTATTGTGGTAAC+TGG | + | chr2_3:17276687-17276706 | Msa0281680:intron | 35.0% | |
| ATGTGATCTTTCCGATTTCA+TGG | + | chr2_3:17276735-17276754 | Msa0281680:intron | 35.0% | |
| !! | TATATTGTGTCTTGGCCTTT+TGG | + | chr2_3:17276828-17276847 | Msa0281680:intron | 35.0% |
| !! | ATATTGTGTCTTGGCCTTTT+GGG | + | chr2_3:17276829-17276848 | Msa0281680:intron | 35.0% |
| CATATCTTAGAGCCAGATTA+GGG | + | chr2_3:17277043-17277062 | Msa0281680:intron | 35.0% | |
| !! | TAATCTTAAGGAGGTTTTGG+GGG | + | chr2_3:17277109-17277128 | Msa0281680:intron | 35.0% |
| !! | ATGTAGAGGAATTTTGGTGT+TGG | + | chr2_3:17277146-17277165 | Msa0281680:intron | 35.0% |
| GAAAACTTACCTCCATATTG+CGG | - | chr2_3:17277175-17277194 | None:intergenic | 35.0% | |
| ! | GCAATATGGAGGTAAGTTTT+CGG | + | chr2_3:17277174-17277193 | Msa0281680:intron | 35.0% |
| ATCAATGTATTCGTTGTTGG+AGG | + | chr2_3:17277201-17277220 | Msa0281680:intron | 35.0% | |
| !!! | GGTTTTATTAGACCCTAGAT+TGG | + | chr2_3:17277228-17277247 | Msa0281680:intron | 35.0% |
| GAAAAGGCAATCACTTTCAA+AGG | - | chr2_3:17277301-17277320 | None:intergenic | 35.0% | |
| ! | TGAAAGTGATTGCCTTTTCT+TGG | + | chr2_3:17277302-17277321 | Msa0281680:intron | 35.0% |
| TTAGCAAGGTTAACTCTAGA+AGG | - | chr2_3:17277349-17277368 | None:intergenic | 35.0% | |
| ! | CGATCGGATTTTTATTGATG+TGG | + | chr2_3:17277616-17277635 | Msa0281680:intron | 35.0% |
| ATCCTCATGATTGTCTGAAT+AGG | + | chr2_3:17277744-17277763 | Msa0281680:intron | 35.0% | |
| TACCTATTCAGACAATCATG+AGG | - | chr2_3:17277749-17277768 | None:intergenic | 35.0% | |
| TTCTGTTTAATTGGGTGCAT+TGG | + | chr2_3:17278004-17278023 | Msa0281680:intron | 35.0% | |
| !! | TTTAATTGGGTGCATTGGTT+TGG | + | chr2_3:17278009-17278028 | Msa0281680:intron | 35.0% |
| ATTACAACAACACCACCAAT+TGG | - | chr2_3:17278092-17278111 | None:intergenic | 35.0% | |
| !! | AATTTGCTGTTGATCGTTGT+AGG | + | chr2_3:17278109-17278128 | Msa0281680:intron | 35.0% |
| ATTATTACTCGTCTTGAGCT+CGG | + | chr2_3:17278202-17278221 | Msa0281680:intron | 35.0% | |
| ATAAGCTTTCCTGTCAGATA+TGG | + | chr2_3:17278272-17278291 | Msa0281680:intron | 35.0% | |
| ! | CCAAACAATTTTCATCTGTG+AGG | - | chr2_3:17278666-17278685 | None:intergenic | 35.0% |
| CCTCACAGATGAAAATTGTT+TGG | + | chr2_3:17278663-17278682 | Msa0281680:intron | 35.0% | |
| CACAGATGAAAATTGTTTGG+TGG | + | chr2_3:17278666-17278685 | Msa0281680:intron | 35.0% | |
| ACGACTGTCTTGTGAAATTT+GGG | + | chr2_3:17278935-17278954 | Msa0281680:three_prime_UTR | 35.0% | |
| GGAATTAAATGTGACCCTAT+TGG | + | chr2_3:17278976-17278995 | Msa0281680:three_prime_UTR | 35.0% | |
| TTTCGCCATTTCGAATTTGG+GGG | - | chr2_3:17275552-17275571 | None:intergenic | 40.0% | |
| CTTTCGCCATTTCGAATTTG+GGG | - | chr2_3:17275553-17275572 | None:intergenic | 40.0% | |
| CTCTTTCGCCATTTCGAATT+TGG | - | chr2_3:17275555-17275574 | None:intergenic | 40.0% | |
| AACTAACGTAACCCACCAAT+TGG | + | chr2_3:17275712-17275731 | Msa0281680:intron | 40.0% | |
| !!! | TTGTGATTTTTGGGGCAGAT+TGG | + | chr2_3:17275804-17275823 | Msa0281680:intron | 40.0% |
| TGTTGCGACAAATAAAGCAG+CGG | + | chr2_3:17275843-17275862 | Msa0281680:CDS | 40.0% | |
| !! | AGCGGCTTTGGCTAAATTTT+TGG | + | chr2_3:17275861-17275880 | Msa0281680:CDS | 40.0% |
| AGGAAGTTGAAGGAACCTAA+TGG | + | chr2_3:17275886-17275905 | Msa0281680:CDS | 40.0% | |
| ! | GTTGAAGGAACCTAATGGAT+TGG | + | chr2_3:17275891-17275910 | Msa0281680:CDS | 40.0% |
| ACTTGTAGAAACAGCCTGTT+TGG | - | chr2_3:17275959-17275978 | None:intergenic | 40.0% | |
| !! | CAGGCTGTTTCTACAAGTAA+TGG | + | chr2_3:17275961-17275980 | Msa0281680:intron | 40.0% |
| ! | CTCTAATATTTAGGACCGGA+GGG | - | chr2_3:17276487-17276506 | None:intergenic | 40.0% |
| ! | TCTCTAATATTTAGGACCGG+AGG | - | chr2_3:17276488-17276507 | None:intergenic | 40.0% |
| ! | TCTCTTATATTTAGGACCGG+AGG | + | chr2_3:17276597-17276616 | Msa0281680:intron | 40.0% |
| ! | CTCTTATATTTAGGACCGGA+GGG | + | chr2_3:17276598-17276617 | Msa0281680:intron | 40.0% |
| TTGTGGTAACTGGTAAGACA+TGG | + | chr2_3:17276697-17276716 | Msa0281680:intron | 40.0% | |
| GGAAAGATCACATTGACAAC+TGG | - | chr2_3:17276728-17276747 | None:intergenic | 40.0% | |
| CAAACAAGTAACAACCAAGC+AGG | - | chr2_3:17276770-17276789 | None:intergenic | 40.0% | |
| AGGAACAAGTGTTACCCAAA+AGG | - | chr2_3:17276846-17276865 | None:intergenic | 40.0% | |
| TCTAATCTGGTCATGCATGA+AGG | - | chr2_3:17276897-17276916 | None:intergenic | 40.0% | |
| ! | CATGTCAACTGACTCTAATC+TGG | - | chr2_3:17276910-17276929 | None:intergenic | 40.0% |
| ATGGGAGATAAGAGAGAAGA+GGG | - | chr2_3:17276939-17276958 | None:intergenic | 40.0% | |
| AATGGGAGATAAGAGAGAAG+AGG | - | chr2_3:17276940-17276959 | None:intergenic | 40.0% | |
| TCCCATTTAAACCCGTTGTT+AGG | + | chr2_3:17276953-17276972 | Msa0281680:intron | 40.0% | |
| ! | CCCTAACAACGGGTTTAAAT+GGG | - | chr2_3:17276957-17276976 | None:intergenic | 40.0% |
| CCCATTTAAACCCGTTGTTA+GGG | + | chr2_3:17276954-17276973 | Msa0281680:intron | 40.0% | |
| CATATCCTAGAGCCAGATTA+GGG | + | chr2_3:17277003-17277022 | Msa0281680:intron | 40.0% | |
| !! | CCTAATCTGGCTCTAAGATA+TGG | - | chr2_3:17277045-17277064 | None:intergenic | 40.0% |
| CCATATCTTAGAGCCAGATT+AGG | + | chr2_3:17277042-17277061 | Msa0281680:intron | 40.0% | |
| !!! | AATCTTAAGGAGGTTTTGGG+GGG | + | chr2_3:17277110-17277129 | Msa0281680:intron | 40.0% |
| GTATTCGTTGTTGGAGGATT+TGG | + | chr2_3:17277207-17277226 | Msa0281680:intron | 40.0% | |
| AACGTGCATTTGTGTCTTTG+TGG | + | chr2_3:17277263-17277282 | Msa0281680:intron | 40.0% | |
| ACAAAGGAGCTTCCAAGAAA+AGG | - | chr2_3:17277317-17277336 | None:intergenic | 40.0% | |
| TAGAAGGAATGCGATCACAA+AGG | - | chr2_3:17277333-17277352 | None:intergenic | 40.0% | |
| TAAGCGTAATGTGCTTGATC+AGG | + | chr2_3:17277366-17277385 | Msa0281680:intron | 40.0% | |
| TCGCAAAACACACATCTAGT+AGG | - | chr2_3:17277397-17277416 | None:intergenic | 40.0% | |
| CTTGTTTGAACTGTTGTCCA+AGG | + | chr2_3:17277462-17277481 | Msa0281680:intron | 40.0% | |
| AACTGTTGTCCAAGGTGAAT+TGG | + | chr2_3:17277470-17277489 | Msa0281680:intron | 40.0% | |
| TTTGATTGGTGAGTCCACAA+GGG | + | chr2_3:17277543-17277562 | Msa0281680:intron | 40.0% | |
| CTATTAACCAATACCCCTTG+TGG | - | chr2_3:17277560-17277579 | None:intergenic | 40.0% | |
| !! | CACAAGGGGTATTGGTTAAT+AGG | + | chr2_3:17277558-17277577 | Msa0281680:intron | 40.0% |
| TTAATAGGCACGTGGCAATT+TGG | + | chr2_3:17277573-17277592 | Msa0281680:intron | 40.0% | |
| TAATAGGCACGTGGCAATTT+GGG | + | chr2_3:17277574-17277593 | Msa0281680:intron | 40.0% | |
| !!! | CGCCATTTTTGAGGGAATTA+AGG | + | chr2_3:17277652-17277671 | Msa0281680:intron | 40.0% |
| CGCCTTAATTCCCTCAAAAA+TGG | - | chr2_3:17277657-17277676 | None:intergenic | 40.0% | |
| GAATTAAGGCGATATCAGGT+AGG | + | chr2_3:17277666-17277685 | Msa0281680:intron | 40.0% | |
| TCCAACACCATTCATAGAAG+AGG | - | chr2_3:17277724-17277743 | None:intergenic | 40.0% | |
| TTTGAGTCTTTGCTGCTGTT+TGG | + | chr2_3:17277909-17277928 | Msa0281680:intron | 40.0% | |
| ! | TTGAGTCTTTGCTGCTGTTT+GGG | + | chr2_3:17277910-17277929 | Msa0281680:intron | 40.0% |
| TGGCAGCAGTTCTGTTTAAT+TGG | + | chr2_3:17277995-17278014 | Msa0281680:intron | 40.0% | |
| GGCAGCAGTTCTGTTTAATT+GGG | + | chr2_3:17277996-17278015 | Msa0281680:intron | 40.0% | |
| !! | TTTGCCTAATGGTGGATGTA+GGG | + | chr2_3:17278053-17278072 | Msa0281680:intron | 40.0% |
| GCAAGAACCGAACAAATACA+AGG | - | chr2_3:17278154-17278173 | None:intergenic | 40.0% | |
| AGGATGACAAAGATGCAGAT+AGG | + | chr2_3:17278787-17278806 | Msa0281680:exon | 40.0% | |
| GGATGACAAAGATGCAGATA+GGG | + | chr2_3:17278788-17278807 | Msa0281680:exon | 40.0% | |
| CACGACTGTCTTGTGAAATT+TGG | + | chr2_3:17278934-17278953 | Msa0281680:three_prime_UTR | 40.0% | |
| !! | GGGTCTAGTTTCCTTTTCTT+AGG | + | chr2_3:17278955-17278974 | Msa0281680:three_prime_UTR | 40.0% |
| !!! | CATTGGTAGGTTTTGAATGC+AGG | + | chr2_3:17279079-17279098 | Msa0281680:three_prime_UTR | 40.0% |
| AGAGATGGTAGATTCAGAGC+CGG | + | chr2_3:17275422-17275441 | Msa0281680:intron | 45.0% | |
| TTGTGGGAGTTGGGAAGAAT+GGG | - | chr2_3:17275638-17275657 | None:intergenic | 45.0% | |
| TTTGTGGGAGTTGGGAAGAA+TGG | - | chr2_3:17275639-17275658 | None:intergenic | 45.0% | |
| GGTTTGGATTTGTGGGAGTT+GGG | - | chr2_3:17275647-17275666 | None:intergenic | 45.0% | |
| GTACCTGGGTTTGGATTTGT+GGG | - | chr2_3:17275654-17275673 | None:intergenic | 45.0% | |
| AAACCCAGGTACGCTTCTAA+GGG | + | chr2_3:17275662-17275681 | Msa0281680:intron | 45.0% | |
| ! | AAACCCTTAGAAGCGTACCT+GGG | - | chr2_3:17275668-17275687 | None:intergenic | 45.0% |
| ! | AAAACCCTTAGAAGCGTACC+TGG | - | chr2_3:17275669-17275688 | None:intergenic | 45.0% |
| !! | GCTGCTTTATTTGTCGCAAC+AGG | - | chr2_3:17275844-17275863 | None:intergenic | 45.0% |
| GACAAATAAAGCAGCGGCTT+TGG | + | chr2_3:17275849-17275868 | Msa0281680:CDS | 45.0% | |
| GCCATGTTTAATACTCCCTC+CGG | + | chr2_3:17276469-17276488 | Msa0281680:intron | 45.0% | |
| !! | ACCGGAGGGAGTATTAAACA+TGG | - | chr2_3:17276473-17276492 | None:intergenic | 45.0% |
| GGAAAGCTCGACCATGAAAT+CGG | - | chr2_3:17276749-17276768 | None:intergenic | 45.0% | |
| CGTGCGAGCAATCAAAAAGT+AGG | - | chr2_3:17276866-17276885 | None:intergenic | 45.0% | |
| TGGGAGATAAGAGAGAAGAG+GGG | - | chr2_3:17276938-17276957 | None:intergenic | 45.0% | |
| ! | GCCCTAACAACGGGTTTAAA+TGG | - | chr2_3:17276958-17276977 | None:intergenic | 45.0% |
| CCATGAATTGCCCTAACAAC+GGG | - | chr2_3:17276967-17276986 | None:intergenic | 45.0% | |
| GCCATGAATTGCCCTAACAA+CGG | - | chr2_3:17276968-17276987 | None:intergenic | 45.0% | |
| !! | CCTAATCTGGCTCTAGGATA+TGG | - | chr2_3:17277005-17277024 | None:intergenic | 45.0% |
| CCATATCCTAGAGCCAGATT+AGG | + | chr2_3:17277002-17277021 | Msa0281680:intron | 45.0% | |
| TGCATGTTGAGTCCCTAATC+TGG | - | chr2_3:17277058-17277077 | None:intergenic | 45.0% | |
| !!! | ATCTTAAGGAGGTTTTGGGG+GGG | + | chr2_3:17277111-17277130 | Msa0281680:intron | 45.0% |
| ! | GGTCGGATGTAGAGGAATTT+TGG | + | chr2_3:17277140-17277159 | Msa0281680:intron | 45.0% |
| ATTAGACCCTAGATTGGGTG+AGG | + | chr2_3:17277234-17277253 | Msa0281680:intron | 45.0% | |
| TGTGTCTTTGTGGAAAAGCC+CGG | + | chr2_3:17277273-17277292 | Msa0281680:intron | 45.0% | |
| CAAGCACATTACGCTTAGCA+AGG | - | chr2_3:17277363-17277382 | None:intergenic | 45.0% | |
| ! | GATGTGTGTTTTGCGACAAG+CGG | + | chr2_3:17277401-17277420 | Msa0281680:intron | 45.0% |
| TTGTCCAAGGTGAATTGGCT+AGG | + | chr2_3:17277475-17277494 | Msa0281680:intron | 45.0% | |
| GTGGACTCACCAATCAAACA+TGG | - | chr2_3:17277541-17277560 | None:intergenic | 45.0% | |
| GTTTGATTGGTGAGTCCACA+AGG | + | chr2_3:17277542-17277561 | Msa0281680:intron | 45.0% | |
| TTGATTGGTGAGTCCACAAG+GGG | + | chr2_3:17277544-17277563 | Msa0281680:intron | 45.0% | |
| !! | GGTATTGGTTAATAGGCACG+TGG | + | chr2_3:17277565-17277584 | Msa0281680:intron | 45.0% |
| ACGTGGCAATTTGGGTACTT+TGG | + | chr2_3:17277582-17277601 | Msa0281680:intron | 45.0% | |
| !!! | AGCGTTGACGCCATTTTTGA+GGG | + | chr2_3:17277644-17277663 | Msa0281680:intron | 45.0% |
| GAGGGAATTAAGGCGATATC+AGG | + | chr2_3:17277662-17277681 | Msa0281680:intron | 45.0% | |
| TTAAGGCGATATCAGGTAGG+TGG | + | chr2_3:17277669-17277688 | Msa0281680:intron | 45.0% | |
| ATATCAGGTAGGTGGCATCT+TGG | + | chr2_3:17277677-17277696 | Msa0281680:intron | 45.0% | |
| CATTCATAGAAGAGGCAAGG+AGG | - | chr2_3:17277716-17277735 | None:intergenic | 45.0% | |
| CTCCTTGCCTCTTCTATGAA+TGG | + | chr2_3:17277714-17277733 | Msa0281680:intron | 45.0% | |
| CACCATTCATAGAAGAGGCA+AGG | - | chr2_3:17277719-17277738 | None:intergenic | 45.0% | |
| GCCTCTTCTATGAATGGTGT+TGG | + | chr2_3:17277720-17277739 | Msa0281680:intron | 45.0% | |
| !! | AGCCTTTGGTGTTTGCCTAA+TGG | + | chr2_3:17278042-17278061 | Msa0281680:intron | 45.0% |
| CACCATTAGGCAAACACCAA+AGG | - | chr2_3:17278047-17278066 | None:intergenic | 45.0% | |
| !! | CTTTGGTGTTTGCCTAATGG+TGG | + | chr2_3:17278045-17278064 | Msa0281680:intron | 45.0% |
| !! | GTTTGCCTAATGGTGGATGT+AGG | + | chr2_3:17278052-17278071 | Msa0281680:intron | 45.0% |
| !! | TTGCCTAATGGTGGATGTAG+GGG | + | chr2_3:17278054-17278073 | Msa0281680:intron | 45.0% |
| TGCTTTGATGTGCCAATTGG+TGG | + | chr2_3:17278077-17278096 | Msa0281680:intron | 45.0% | |
| ACCAAGCTCAAGACGAACAA+GGG | - | chr2_3:17278179-17278198 | None:intergenic | 45.0% | |
| AACCAAGCTCAAGACGAACA+AGG | - | chr2_3:17278180-17278199 | None:intergenic | 45.0% | |
| GGAACAAAATGATCTCCCTG+CGG | + | chr2_3:17278498-17278517 | Msa0281680:CDS | 45.0% | |
| AAATGATCTCCCTGCGGTAA+AGG | + | chr2_3:17278504-17278523 | Msa0281680:CDS | 45.0% | |
| TCTTGCATTCCTTTACCGCA+GGG | - | chr2_3:17278516-17278535 | None:intergenic | 45.0% | |
| TTCTTGCATTCCTTTACCGC+AGG | - | chr2_3:17278517-17278536 | None:intergenic | 45.0% | |
| GAGTTGGGAAGAATGGGAAG+AGG | - | chr2_3:17275632-17275651 | None:intergenic | 50.0% | |
| GGGTTTGGATTTGTGGGAGT+TGG | - | chr2_3:17275648-17275667 | None:intergenic | 50.0% | |
| ACTCCCACAAATCCAAACCC+AGG | + | chr2_3:17275648-17275667 | Msa0281680:CDS | 50.0% | |
| CGTACCTGGGTTTGGATTTG+TGG | - | chr2_3:17275655-17275674 | None:intergenic | 50.0% | |
| ! | CTTAGAAGCGTACCTGGGTT+TGG | - | chr2_3:17275663-17275682 | None:intergenic | 50.0% |
| CAAACCCAGGTACGCTTCTA+AGG | + | chr2_3:17275661-17275680 | Msa0281680:intron | 50.0% | |
| !! | GTGGAATGATGGGTTTGACC+TGG | + | chr2_3:17276143-17276162 | Msa0281680:intron | 50.0% |
| CCCGTTGTTAGGGCAATTCA+TGG | + | chr2_3:17276964-17276983 | Msa0281680:intron | 50.0% | |
| GGATATGGTGTCTGCATGTG+TGG | - | chr2_3:17276990-17277009 | None:intergenic | 50.0% | |
| !! | TGTGTCCCTAATCTGGCTCT+AGG | - | chr2_3:17277011-17277030 | None:intergenic | 50.0% |
| TGCATGCTGTGTCCCTAATC+TGG | - | chr2_3:17277018-17277037 | None:intergenic | 50.0% | |
| !! | TGGTGTTGGTGTCCGCAATA+TGG | + | chr2_3:17277160-17277179 | Msa0281680:intron | 50.0% |
| ! | TGTTGGTGTCCGCAATATGG+AGG | + | chr2_3:17277163-17277182 | Msa0281680:intron | 50.0% |
| GTGTCTTTGTGGAAAAGCCC+GGG | + | chr2_3:17277274-17277293 | Msa0281680:intron | 50.0% | |
| TGTCTTTGTGGAAAAGCCCG+GGG | + | chr2_3:17277275-17277294 | Msa0281680:intron | 50.0% | |
| CAATCACTTTCAAAGGCCCC+GGG | - | chr2_3:17277294-17277313 | None:intergenic | 50.0% | |
| GCAATCACTTTCAAAGGCCC+CGG | - | chr2_3:17277295-17277314 | None:intergenic | 50.0% | |
| GATGCCTAGCCAATTCACCT+TGG | - | chr2_3:17277482-17277501 | None:intergenic | 50.0% | |
| !!! | GAGCGTTGACGCCATTTTTG+AGG | + | chr2_3:17277643-17277662 | Msa0281680:intron | 50.0% |
| !! | GTTTGGTGTGCTGTAGCTTC+AGG | + | chr2_3:17277770-17277789 | Msa0281680:intron | 50.0% |
| CTGCTGTGTCTGGATGTTTC+AGG | + | chr2_3:17277843-17277862 | Msa0281680:intron | 50.0% | |
| ! | GTGTCTGGATGTTTCAGGTC+TGG | + | chr2_3:17277848-17277867 | Msa0281680:intron | 50.0% |
| !!! | GCGTTTGGGGGTTGTTTTTC+TGG | + | chr2_3:17277953-17277972 | Msa0281680:intron | 50.0% |
| !!! | TGGGGGTTGTTTTTCTGGTC+TGG | + | chr2_3:17277958-17277977 | Msa0281680:intron | 50.0% |
| !! | TTGGGTGCATTGGTTTGGTC+TGG | + | chr2_3:17278014-17278033 | Msa0281680:intron | 50.0% |
| !! | TGGGTGCATTGGTTTGGTCT+GGG | + | chr2_3:17278015-17278034 | Msa0281680:intron | 50.0% |
| GGGTGCTTTGATGTGCCAAT+TGG | + | chr2_3:17278074-17278093 | Msa0281680:intron | 50.0% | |
| CCAAGCTCAAGACGAACAAG+GGG | - | chr2_3:17278178-17278197 | None:intergenic | 50.0% | |
| GTCCGGCATGTAGTATCCTT+TGG | + | chr2_3:17278454-17278473 | Msa0281680:CDS | 50.0% | |
| CGCCAAAGGATACTACATGC+CGG | - | chr2_3:17278459-17278478 | None:intergenic | 50.0% | |
| ACTTGCATCTGAGTCGCCAA+AGG | - | chr2_3:17278473-17278492 | None:intergenic | 50.0% | |
| CGACTCAGATGCAAGTGAAG+AGG | + | chr2_3:17278477-17278496 | Msa0281680:CDS | 50.0% | |
| TTTGTCGCAACAGGTCCACC+AGG | - | chr2_3:17275835-17275854 | None:intergenic | 55.0% | |
| CATGGTCGAGCTTTCCTGCT+TGG | + | chr2_3:17276753-17276772 | Msa0281680:intron | 55.0% | |
| !! | TTTTGGGGGGGTGAGATGGT+CGG | + | chr2_3:17277123-17277142 | Msa0281680:intron | 55.0% |
| GGTGAGATGGTCGGATGTAG+AGG | + | chr2_3:17277132-17277151 | Msa0281680:intron | 55.0% | |
| AGACCCTAGATTGGGTGAGG+CGG | + | chr2_3:17277237-17277256 | Msa0281680:intron | 55.0% | |
| ! | GTGTGTTTTGCGACAAGCGG+AGG | + | chr2_3:17277404-17277423 | Msa0281680:intron | 55.0% |
| ! | GGTGAGTCCACAAGGGGTAT+TGG | + | chr2_3:17277550-17277569 | Msa0281680:intron | 55.0% |
| GCTGTAGCTTCAGGCACTCT+TGG | + | chr2_3:17277779-17277798 | Msa0281680:intron | 55.0% | |
| TAGCTTCAGGCACTCTTGGC+AGG | + | chr2_3:17277783-17277802 | Msa0281680:intron | 55.0% | |
| AGCTTCAGGCACTCTTGGCA+GGG | + | chr2_3:17277784-17277803 | Msa0281680:intron | 55.0% | |
| ! | GTTGGTCTGCTGAAGCAGTC+TGG | + | chr2_3:17277811-17277830 | Msa0281680:intron | 55.0% |
| CATCCAGACACAGCAGACAG+CGG | - | chr2_3:17277839-17277858 | None:intergenic | 55.0% | |
| TCTGCTGAGCTGTGTGCGTT+TGG | + | chr2_3:17277938-17277957 | Msa0281680:intron | 55.0% | |
| CTGCTGAGCTGTGTGCGTTT+GGG | + | chr2_3:17277939-17277958 | Msa0281680:intron | 55.0% | |
| TGCTGAGCTGTGTGCGTTTG+GGG | + | chr2_3:17277940-17277959 | Msa0281680:intron | 55.0% | |
| TTGGTCTGGGCAGTAGCCTT+TGG | + | chr2_3:17278028-17278047 | Msa0281680:intron | 55.0% | |
| GCACCCCTACATCCACCATT+AGG | - | chr2_3:17278060-17278079 | None:intergenic | 55.0% | |
| CCCCTTGTTCGTCTTGAGCT+TGG | + | chr2_3:17278175-17278194 | Msa0281680:intron | 55.0% | |
| GATGAACGACGCGCACTTCG+TGG | + | chr2_3:17275593-17275612 | Msa0281680:CDS | 60.0% | |
| ! | TGGGGCAGATTGGCTCATCC+TGG | + | chr2_3:17275814-17275833 | Msa0281680:intron | 60.0% |
| ! | GGCAGATTGGCTCATCCTGG+TGG | + | chr2_3:17275817-17275836 | Msa0281680:intron | 60.0% |
| !!! | GAGGTTTTGGGGGGGTGAGA+TGG | + | chr2_3:17277119-17277138 | Msa0281680:intron | 60.0% |
| CCTCCGCCTCACCCAATCTA+GGG | - | chr2_3:17277243-17277262 | None:intergenic | 60.0% | |
| TCCTCCGCCTCACCCAATCT+AGG | - | chr2_3:17277244-17277263 | None:intergenic | 60.0% | |
| GCTTCAGGCACTCTTGGCAG+GGG | + | chr2_3:17277785-17277804 | Msa0281680:intron | 60.0% | |
| ! | CACTCTTGGCAGGGGTGTGT+TGG | + | chr2_3:17277793-17277812 | Msa0281680:intron | 60.0% |
| GTTCCGCTGTCTGCTGTGTC+TGG | + | chr2_3:17277833-17277852 | Msa0281680:intron | 60.0% | |
| GCTGAGCTGTGTGCGTTTGG+GGG | + | chr2_3:17277941-17277960 | Msa0281680:intron | 60.0% | |
| TCTGGTCTGGCTGTGTCCCT+CGG | + | chr2_3:17277971-17277990 | Msa0281680:intron | 60.0% | |
| ACAGAACTGCTGCCAGCCGA+GGG | - | chr2_3:17277990-17278009 | None:intergenic | 60.0% | |
| AACAGAACTGCTGCCAGCCG+AGG | - | chr2_3:17277991-17278010 | None:intergenic | 60.0% | |
| CCCTAGATTGGGTGAGGCGG+AGG | + | chr2_3:17277240-17277259 | Msa0281680:intron | 65.0% | |
| GTCTGGCTGTGTCCCTCGGC+TGG | + | chr2_3:17277975-17277994 | Msa0281680:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 17275397 | 17279134 | 17275397 | ID=Msa0281680;Name=Msa0281680 |
| chr2_3 | mRNA | 17275397 | 17279134 | 17275397 | ID=Msa0281680-mRNA-1;Parent=Msa0281680;Name=Msa0281680-mRNA-1;_AED=0.05;_eAED=0.05;_QI=86|1|1|1|0.5|0.4|5|341|145 |
| chr2_3 | exon | 17275397 | 17275418 | 17275397 | ID=Msa0281680-mRNA-1:exon:7092;Parent=Msa0281680-mRNA-1 |
| chr2_3 | exon | 17275499 | 17275669 | 17275499 | ID=Msa0281680-mRNA-1:exon:7093;Parent=Msa0281680-mRNA-1 |
| chr2_3 | exon | 17275822 | 17275976 | 17275822 | ID=Msa0281680-mRNA-1:exon:7094;Parent=Msa0281680-mRNA-1 |
| chr2_3 | exon | 17278428 | 17278582 | 17278428 | ID=Msa0281680-mRNA-1:exon:7095;Parent=Msa0281680-mRNA-1 |
| chr2_3 | exon | 17278773 | 17279134 | 17278773 | ID=Msa0281680-mRNA-1:exon:7096;Parent=Msa0281680-mRNA-1 |
| chr2_3 | five_prime_UTR | 17275397 | 17275418 | 17275397 | ID=Msa0281680-mRNA-1:five_prime_utr;Parent=Msa0281680-mRNA-1 |
| chr2_3 | five_prime_UTR | 17275499 | 17275562 | 17275499 | ID=Msa0281680-mRNA-1:five_prime_utr;Parent=Msa0281680-mRNA-1 |
| chr2_3 | CDS | 17275563 | 17275669 | 17275563 | ID=Msa0281680-mRNA-1:cds;Parent=Msa0281680-mRNA-1 |
| chr2_3 | CDS | 17275822 | 17275976 | 17275822 | ID=Msa0281680-mRNA-1:cds;Parent=Msa0281680-mRNA-1 |
| chr2_3 | CDS | 17278428 | 17278582 | 17278428 | ID=Msa0281680-mRNA-1:cds;Parent=Msa0281680-mRNA-1 |
| chr2_3 | CDS | 17278773 | 17278793 | 17278773 | ID=Msa0281680-mRNA-1:cds;Parent=Msa0281680-mRNA-1 |
| chr2_3 | three_prime_UTR | 17278794 | 17279134 | 17278794 | ID=Msa0281680-mRNA-1:three_prime_utr;Parent=Msa0281680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
