Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0200620 | XP_024633185.1 | 97.931 | 145 | 3 | 0 | 1 | 145 | 1 | 145 | 3.49e-95 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0200620 | A0A396J570 | 97.931 | 145 | 3 | 0 | 1 | 145 | 1 | 145 | 1.67e-95 | 281 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030300 | Msa0200620 | 0.817359 | 3.434961e-52 | -8.615850e-47 |
| Msa0055070 | Msa0200620 | 0.805304 | 1.423810e-49 | -8.615850e-47 |
| Msa0065650 | Msa0200620 | 0.801320 | 9.517535e-49 | -8.615850e-47 |
| Msa0101020 | Msa0200620 | 0.806879 | 6.639468e-50 | -8.615850e-47 |
| Msa0124550 | Msa0200620 | 0.801156 | 1.028248e-48 | -8.615850e-47 |
| Msa0178510 | Msa0200620 | 0.804598 | 2.000439e-49 | -8.615850e-47 |
| Msa0187490 | Msa0200620 | 0.814267 | 1.680445e-51 | -8.615850e-47 |
| Msa0200620 | Msa0236070 | 0.800946 | 1.135124e-48 | -8.615850e-47 |
| Msa0200620 | Msa0264530 | 0.808846 | 2.534016e-50 | -8.615850e-47 |
| Msa0200620 | Msa0265600 | 0.802422 | 5.652652e-49 | -8.615850e-47 |
| Msa0200620 | Msa0281480 | 0.806168 | 9.377342e-50 | -8.615850e-47 |
| Msa0200620 | Msa0281680 | 0.831069 | 2.056470e-55 | -8.615850e-47 |
| Msa0200620 | Msa0284450 | 0.817005 | 4.127094e-52 | -8.615850e-47 |
| Msa0200620 | Msa0303460 | 0.800162 | 1.640263e-48 | -8.615850e-47 |
| Msa0200620 | Msa0307310 | 0.805569 | 1.253148e-49 | -8.615850e-47 |
| Msa0200620 | Msa0320610 | 0.825277 | 5.117631e-54 | -8.615850e-47 |
| Msa0200620 | Msa0378970 | 0.800642 | 1.309341e-48 | -8.615850e-47 |
| Msa0200620 | Msa0392200 | 0.803692 | 3.087441e-49 | -8.615850e-47 |
| Msa0200620 | Msa0410300 | 0.806575 | 7.697298e-50 | -8.615850e-47 |
| Msa0200620 | Msa0422180 | 0.820616 | 6.242322e-53 | -8.615850e-47 |
| Msa0200620 | Msa0439890 | 0.829568 | 4.785056e-55 | -8.615850e-47 |
| Msa0200620 | Msa0461590 | 0.803729 | 3.034085e-49 | -8.615850e-47 |
| Msa0200620 | Msa0468320 | 0.803924 | 2.763568e-49 | -8.615850e-47 |
| Msa0200620 | Msa0475930 | 0.811783 | 5.890401e-51 | -8.615850e-47 |
| Msa0200620 | Msa0514610 | 0.818818 | 1.607447e-52 | -8.615850e-47 |
| Msa0200620 | Msa0517090 | 0.811758 | 5.963225e-51 | -8.615850e-47 |
| Msa0200620 | Msa0518440 | 0.825165 | 5.437801e-54 | -8.615850e-47 |
| Msa0200620 | Msa0523910 | 0.808636 | 2.810361e-50 | -8.615850e-47 |
| Msa0200620 | Msa0532980 | 0.816566 | 5.177290e-52 | -8.615850e-47 |
| Msa0200620 | Msa0618950 | 0.802830 | 4.658100e-49 | -8.615850e-47 |
| Msa0200620 | Msa0618970 | 0.802875 | 4.557366e-49 | -8.615850e-47 |
| Msa0200620 | Msa0620330 | 0.834725 | 2.538972e-56 | -8.615850e-47 |
| Msa0200620 | Msa0661090 | 0.801482 | 8.818295e-49 | -8.615850e-47 |
| Msa0200620 | Msa0667770 | 0.812249 | 4.662132e-51 | -8.615850e-47 |
| Msa0200620 | Msa0679550 | 0.806427 | 8.269032e-50 | -8.615850e-47 |
| Msa0200620 | Msa0695870 | 0.801301 | 9.605298e-49 | -8.615850e-47 |
| Msa0200620 | Msa0710270 | 0.811336 | 7.367406e-51 | -8.615850e-47 |
| Msa0200620 | Msa0721340 | 0.838657 | 2.525052e-57 | -8.615850e-47 |
| Msa0200620 | Msa0726080 | 0.816986 | 4.167615e-52 | -8.615850e-47 |
| Msa0200620 | Msa0736570 | 0.820832 | 5.568031e-53 | -8.615850e-47 |
| Msa0200620 | Msa0741070 | 0.805371 | 1.378687e-49 | -8.615850e-47 |
| Msa0200620 | Msa0760350 | 0.800263 | 1.564362e-48 | -8.615850e-47 |
| Msa0200620 | Msa0779260 | 0.809812 | 1.572687e-50 | -8.615850e-47 |
| Msa0200620 | Msa0797250 | 0.807475 | 4.964007e-50 | -8.615850e-47 |
| Msa0200620 | Msa0801730 | 0.801678 | 8.038584e-49 | -8.615850e-47 |
| Msa0200620 | Msa0821190 | 0.811844 | 5.711666e-51 | -8.615850e-47 |
| Msa0200620 | Msa0823500 | 0.834296 | 3.253774e-56 | -8.615850e-47 |
| Msa0200620 | Msa0846230 | 0.819581 | 1.077380e-52 | -8.615850e-47 |
| Msa0200620 | Msa0862500 | 0.836836 | 7.407874e-57 | -8.615850e-47 |
| Msa0200620 | Msa0866400 | 0.822899 | 1.850835e-53 | -8.615850e-47 |
| Msa0200620 | Msa0877710 | 0.832118 | 1.134233e-55 | -8.615850e-47 |
| Msa0200620 | Msa0901320 | 0.815077 | 1.111949e-51 | -8.615850e-47 |
| Msa0200620 | Msa0965020 | 0.801874 | 7.329782e-49 | -8.615850e-47 |
| Msa0200620 | Msa0980020 | 0.808551 | 2.929428e-50 | -8.615850e-47 |
| Msa0200620 | Msa1001080 | 0.804032 | 2.624727e-49 | -8.615850e-47 |
| Msa0200620 | Msa1031770 | 0.807109 | 5.936160e-50 | -8.615850e-47 |
| Msa0200620 | Msa1034310 | 0.808817 | 2.570399e-50 | -8.615850e-47 |
| Msa0200620 | Msa1042660 | 0.807891 | 4.049610e-50 | -8.615850e-47 |
| Msa0200620 | Msa1050420 | 0.812328 | 4.479545e-51 | -8.615850e-47 |
| Msa0200620 | Msa1063420 | 0.805394 | 1.363695e-49 | -8.615850e-47 |
| Msa0200620 | Msa1070840 | 0.811603 | 6.446452e-51 | -8.615850e-47 |
| Msa0200620 | Msa1089320 | 0.803978 | 2.692858e-49 | -8.615850e-47 |
| Msa0200620 | Msa1114590 | 0.839065 | 1.980169e-57 | -8.615850e-47 |
| Msa0200620 | Msa1115280 | 0.802667 | 5.032962e-49 | -8.615850e-47 |
| Msa0200620 | Msa1118760 | 0.810766 | 9.790716e-51 | -8.615850e-47 |
| Msa0200620 | Msa1130530 | 0.809998 | 1.433816e-50 | -8.615850e-47 |
| Msa0200620 | Msa1143020 | 0.821862 | 3.220996e-53 | -8.615850e-47 |
| Msa0200620 | Msa1270660 | 0.811774 | 5.916477e-51 | -8.615850e-47 |
| Msa0200620 | Msa1286550 | 0.812192 | 4.796800e-51 | -8.615850e-47 |
| Msa0200620 | Msa1341490 | 0.800057 | 1.722538e-48 | -8.615850e-47 |
| Msa0200620 | Msa1364210 | 0.804925 | 1.709155e-49 | -8.615850e-47 |
| Msa0200620 | Msa1372150 | 0.800342 | 1.507578e-48 | -8.615850e-47 |
| Msa0200620 | Msa1376130 | 0.818607 | 1.794235e-52 | -8.615850e-47 |
| Msa0200620 | Msa1377570 | 0.822391 | 2.429334e-53 | -8.615850e-47 |
| Msa0200620 | Msa1382790 | 0.812403 | 4.315538e-51 | -8.615850e-47 |
| Msa0200620 | Msa1389880 | 0.818177 | 2.245382e-52 | -8.615850e-47 |
| Msa0200620 | Msa1407190 | 0.816904 | 4.348635e-52 | -8.615850e-47 |
| Msa0200620 | Msa1426570 | 0.803093 | 4.109671e-49 | -8.615850e-47 |
| Msa0200620 | Msa1428780 | 0.812427 | 4.262678e-51 | -8.615850e-47 |
| Msa0200620 | Msa1432130 | 0.815275 | 1.004666e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0200620 | MtrunA17_Chr2g0296411 | 97.931 | 145 | 3 | 0 | 1 | 145 | 1 | 145 | 3.21e-99 | 281 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0200620 | AT5G18540.3 | 70.476 | 105 | 30 | 1 | 6 | 109 | 8 | 112 | 3.03e-41 | 134 |
| Msa0200620 | AT5G18540.4 | 70.476 | 105 | 30 | 1 | 6 | 109 | 8 | 112 | 3.03e-41 | 134 |
| Msa0200620 | AT5G18540.2 | 62.595 | 131 | 44 | 2 | 6 | 131 | 8 | 138 | 3.37e-36 | 122 |
| Msa0200620 | AT5G18540.1 | 60.606 | 132 | 45 | 2 | 6 | 130 | 8 | 139 | 3.69e-36 | 122 |
Find 47 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTCGCCATTTCGAATT+TGG | 0.064979 | 2_1:-20826981 | None:intergenic |
| CACGACTGTCTTGTGAAATT+TGG | 0.081032 | 2_1:+20830391 | Msa0200620:three_prime_UTR |
| ATTAAACAACTGTGTTTCTT+AGG | 0.186893 | 2_1:+20830345 | Msa0200620:three_prime_UTR |
| TCTTTCGCCATTTCGAATTT+GGG | 0.247508 | 2_1:-20826980 | None:intergenic |
| GACAAATAAAGCAGCGGCTT+TGG | 0.324493 | 2_1:+20827277 | Msa0200620:CDS |
| ACGACTGTCTTGTGAAATTT+GGG | 0.341775 | 2_1:+20830392 | Msa0200620:three_prime_UTR |
| CTTAGAAGCGTACCTGGGTT+TGG | 0.342468 | 2_1:-20827089 | None:intergenic |
| GGAATTAAATGTGACCCTAT+TGG | 0.346127 | 2_1:+20830433 | Msa0200620:three_prime_UTR |
| ATTTAAGAAATTAATTCAAT+AGG | 0.349289 | 2_1:+20830311 | Msa0200620:three_prime_UTR |
| AACATGGATAAATTTGAAAT+AGG | 0.361879 | 2_1:-20830571 | None:intergenic |
| TTAATAGATGCCAATCCATT+AGG | 0.362024 | 2_1:-20827329 | None:intergenic |
| ATATATCAATAAATACCAAT+AGG | 0.365848 | 2_1:-20830448 | None:intergenic |
| ACTTGTAGAAACAGCCTGTT+TGG | 0.376483 | 2_1:-20827384 | None:intergenic |
| GCTGCTTTATTTGTCGCAAC+AGG | 0.376882 | 2_1:-20827269 | None:intergenic |
| ACAGCAATTTCAAGTAGATC+AGG | 0.393490 | 2_1:-20827353 | None:intergenic |
| TTGTGAGAGTTGGGAAGAAT+GGG | 0.399161 | 2_1:-20827064 | None:intergenic |
| AAAATTGTTATTCATTCAAA+TGG | 0.399188 | 2_1:+20830278 | Msa0200620:three_prime_UTR |
| CACATTTAATTCCTAAGAAA+AGG | 0.400890 | 2_1:-20830423 | None:intergenic |
| AGGATGACAAAGATGCAGAT+AGG | 0.440000 | 2_1:+20830244 | Msa0200620:exon |
| TTTGTGAGAGTTGGGAAGAA+TGG | 0.446565 | 2_1:-20827065 | None:intergenic |
| GTCCGGCATGTAGTATCCTT+TGG | 0.446901 | 2_1:+20829911 | Msa0200620:CDS |
| TATATCAATAAATACCAATA+GGG | 0.450665 | 2_1:-20830447 | None:intergenic |
| TTGGGCAGATTGGCTCATCC+TGG | 0.452543 | 2_1:+20827242 | Msa0200620:intron |
| CTTTCGCCATTTCGAATTTG+GGG | 0.463094 | 2_1:-20826979 | None:intergenic |
| GATGAACGACGCGCACTTCG+TGG | 0.465818 | 2_1:+20827022 | Msa0200620:CDS |
| GGTTTGGATTTGTGAGAGTT+GGG | 0.466859 | 2_1:-20827073 | None:intergenic |
| AGGAAGTTGAAGGAACCTAA+TGG | 0.473777 | 2_1:+20827314 | Msa0200620:CDS |
| TTTGAAGAAATTATTTACAT+TGG | 0.485391 | 2_1:+20830519 | Msa0200620:three_prime_UTR |
| ATGGATAAATTTGAAATAGG+AGG | 0.489795 | 2_1:-20830568 | None:intergenic |
| AAATGATCTCCCTGCGGTAA+AGG | 0.494996 | 2_1:+20829961 | Msa0200620:CDS |
| GAGTTGGGAAGAATGGGAAG+AGG | 0.497265 | 2_1:-20827058 | None:intergenic |
| AAGAAATTATTTACATTGGT+AGG | 0.498095 | 2_1:+20830523 | Msa0200620:three_prime_UTR |
| TTCTTGCATTCCTTTACCGC+AGG | 0.498619 | 2_1:-20829971 | None:intergenic |
| GGGTTTGGATTTGTGAGAGT+TGG | 0.508864 | 2_1:-20827074 | None:intergenic |
| CAGCAATTTCAAGTAGATCA+GGG | 0.537601 | 2_1:-20827352 | None:intergenic |
| GGCAGATTGGCTCATCCTGG+TGG | 0.539450 | 2_1:+20827245 | Msa0200620:intron |
| GTTGAAGGAACCTAATGGAT+TGG | 0.539737 | 2_1:+20827319 | Msa0200620:CDS |
| TTTGTCGCAACAGGTCCACC+AGG | 0.551614 | 2_1:-20827260 | None:intergenic |
| GGATGACAAAGATGCAGATA+GGG | 0.553491 | 2_1:+20830245 | Msa0200620:exon |
| TTTCGCCATTTCGAATTTGG+GGG | 0.560025 | 2_1:-20826978 | None:intergenic |
| TCTTGCATTCCTTTACCGCA+GGG | 0.595427 | 2_1:-20829970 | None:intergenic |
| CGACTCAGATGCAAGTGAAG+AGG | 0.603099 | 2_1:+20829934 | Msa0200620:CDS |
| ACTTGCATCTGAGTCGCCAA+AGG | 0.613909 | 2_1:-20829927 | None:intergenic |
| CGCCAAAGGATACTACATGC+CGG | 0.622715 | 2_1:-20829913 | None:intergenic |
| ACTCTCACAAATCCAAACCC+AGG | 0.696805 | 2_1:+20827077 | Msa0200620:CDS |
| TGTTGCGACAAATAAAGCAG+CGG | 0.710999 | 2_1:+20827271 | Msa0200620:CDS |
| GGAACAAAATGATCTCCCTG+CGG | 0.782854 | 2_1:+20829955 | Msa0200620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAGAAATTAATTCAAT+AGG | + | chr2_1:20830311-20830330 | Msa0200620:three_prime_UTR | 10.0% |
| !!! | TTCTTTTTGTTCATTTTATT+TGG | + | chr2_1:20827456-20827475 | Msa0200620:intron | 15.0% |
| !!! | TCAAATTTTCATCATATTTT+CGG | - | chr2_1:20827734-20827753 | None:intergenic | 15.0% |
| !! | TGTTATTATTAATATGTAAG+TGG | + | chr2_1:20827791-20827810 | Msa0200620:intron | 15.0% |
| !! | GTTATTATTAATATGTAAGT+GGG | + | chr2_1:20827792-20827811 | Msa0200620:intron | 15.0% |
| !!! | TAAGAGAATAATCTTTTTTT+AGG | - | chr2_1:20828039-20828058 | None:intergenic | 15.0% |
| !! | AAGATTATTCTCTTATATTT+AGG | + | chr2_1:20828044-20828063 | Msa0200620:intron | 15.0% |
| !! | AATATAAGAAATGTTATGTT+TGG | + | chr2_1:20828102-20828121 | Msa0200620:intron | 15.0% |
| !! | ATATAAGAAATGTTATGTTT+GGG | + | chr2_1:20828103-20828122 | Msa0200620:intron | 15.0% |
| !!! | TTTGAATAAACAAATTTTGT+GGG | - | chr2_1:20828971-20828990 | None:intergenic | 15.0% |
| !!! | ATTTGAATAAACAAATTTTG+TGG | - | chr2_1:20828972-20828991 | None:intergenic | 15.0% |
| !!! | AACATTTTTTTTTTTTGAAG+CGG | - | chr2_1:20829705-20829724 | None:intergenic | 15.0% |
| !!! | AAAATTGTTATTCATTCAAA+TGG | + | chr2_1:20830278-20830297 | Msa0200620:three_prime_UTR | 15.0% |
| !! | TATATCAATAAATACCAATA+GGG | - | chr2_1:20830450-20830469 | None:intergenic | 15.0% |
| !! | ATATATCAATAAATACCAAT+AGG | - | chr2_1:20830451-20830470 | None:intergenic | 15.0% |
| !! | TTTGAAGAAATTATTTACAT+TGG | + | chr2_1:20830519-20830538 | Msa0200620:three_prime_UTR | 15.0% |
| !!! | AAAGAAATAGTTAATTTGAC+CGG | - | chr2_1:20826872-20826891 | None:intergenic | 20.0% |
| !! | AAATCAAAAATTTCACCAAT+TGG | - | chr2_1:20827159-20827178 | None:intergenic | 20.0% |
| !!! | AATTTTTGATTTTGAATTCG+TGG | + | chr2_1:20827167-20827186 | Msa0200620:intron | 20.0% |
| !!! | ATTTTTGATTTTGAATTCGT+GGG | + | chr2_1:20827168-20827187 | Msa0200620:intron | 20.0% |
| !!! | TGTAATTCCTTTAATTTTAG+TGG | + | chr2_1:20827197-20827216 | Msa0200620:intron | 20.0% |
| !!! | GTAATTCCTTTAATTTTAGT+GGG | + | chr2_1:20827198-20827217 | Msa0200620:intron | 20.0% |
| !!! | TGTTTTTTTAGTGATTATTG+TGG | + | chr2_1:20827552-20827571 | Msa0200620:intron | 20.0% |
| !! | ATATATGATACAATGTGTTT+AGG | + | chr2_1:20827649-20827668 | Msa0200620:intron | 20.0% |
| !! | TATATGATACAATGTGTTTA+GGG | + | chr2_1:20827650-20827669 | Msa0200620:intron | 20.0% |
| !! | AATTTGATTAAGAGAAGAAA+TGG | + | chr2_1:20827747-20827766 | Msa0200620:intron | 20.0% |
| !! | ATGAATCTTCTCTAATATTT+AGG | - | chr2_1:20827945-20827964 | None:intergenic | 20.0% |
| !!! | TTAGAGAAGATTCATTTTTT+AGG | + | chr2_1:20827950-20827969 | Msa0200620:intron | 20.0% |
| !! | GTATAATATATATTGTGTCT+TGG | + | chr2_1:20828277-20828296 | Msa0200620:intron | 20.0% |
| !!! | TTGAATAAACAAATTTTGTG+GGG | - | chr2_1:20828970-20828989 | None:intergenic | 20.0% |
| !!! | GACATAAAATATTAGCTTAA+TGG | - | chr2_1:20829801-20829820 | None:intergenic | 20.0% |
| !! | GAAGAAAAATAAAAAACGAA+AGG | + | chr2_1:20830018-20830037 | Msa0200620:CDS | 20.0% |
| !!! | ATTTTCAGTTTATTTCTTTC+AGG | + | chr2_1:20830208-20830227 | Msa0200620:intron | 20.0% |
| !!! | ATTGATATATTTTTAGACAG+AGG | + | chr2_1:20830461-20830480 | Msa0200620:three_prime_UTR | 20.0% |
| !! | AAGAAATTATTTACATTGGT+AGG | + | chr2_1:20830523-20830542 | Msa0200620:three_prime_UTR | 20.0% |
| !!! | TTTTTTAAAAAGGACAGAGA+TGG | + | chr2_1:20826828-20826847 | Msa0200620:intron | 25.0% |
| !!! | TGATTTGGATTTGTGATTTT+TGG | + | chr2_1:20827223-20827242 | Msa0200620:intron | 25.0% |
| !! | GATTTGGATTTGTGATTTTT+GGG | + | chr2_1:20827224-20827243 | Msa0200620:intron | 25.0% |
| !!! | TTGGTTATTAATTGATGATG+TGG | + | chr2_1:20827475-20827494 | Msa0200620:intron | 25.0% |
| ! | ATATATCTGTATCAGATACT+CGG | - | chr2_1:20827625-20827644 | None:intergenic | 25.0% |
| ! | TAATATGTAAGTGGGAAAAT+AGG | + | chr2_1:20827800-20827819 | Msa0200620:intron | 25.0% |
| ! | AATATGTAAGTGGGAAAATA+GGG | + | chr2_1:20827801-20827820 | Msa0200620:intron | 25.0% |
| ! | ATAGGGATTATTAGTTGAAT+AGG | + | chr2_1:20827818-20827837 | Msa0200620:intron | 25.0% |
| !! | ATGTGTGTTTTTCTGTTATT+GGG | + | chr2_1:20827853-20827872 | Msa0200620:intron | 25.0% |
| !! | TATTCTCTTATATTTAGGAC+CGG | + | chr2_1:20828049-20828068 | Msa0200620:intron | 25.0% |
| ! | TTGTTTGTAGTATTAGAATG+AGG | + | chr2_1:20828240-20828259 | Msa0200620:intron | 25.0% |
| ! | TGTTTGTAGTATTAGAATGA+GGG | + | chr2_1:20828241-20828260 | Msa0200620:intron | 25.0% |
| ! | AAAATCAATGTATTCGTTGT+TGG | + | chr2_1:20828653-20828672 | Msa0200620:intron | 25.0% |
| ! | TTGTTATCCTTGTATTTGTT+CGG | + | chr2_1:20829599-20829618 | Msa0200620:intron | 25.0% |
| ! | TAAAAAAATCCATATCTGAC+AGG | - | chr2_1:20829741-20829760 | None:intergenic | 25.0% |
| ! | AAAATTGAAGAGAATCACAA+AGG | - | chr2_1:20829863-20829882 | None:intergenic | 25.0% |
| !! | TTGTGATTCTCTTCAATTTT+AGG | + | chr2_1:20829863-20829882 | Msa0200620:intron | 25.0% |
| ! | CTAATTCAAAAAGAAATGTC+CGG | + | chr2_1:20829894-20829913 | Msa0200620:CDS | 25.0% |
| ! | ATTAAACAACTGTGTTTCTT+AGG | + | chr2_1:20830345-20830364 | Msa0200620:three_prime_UTR | 25.0% |
| ! | CACATTTAATTCCTAAGAAA+AGG | - | chr2_1:20830426-20830445 | None:intergenic | 25.0% |
| !! | ATGGATAAATTTGAAATAGG+AGG | - | chr2_1:20830571-20830590 | None:intergenic | 25.0% |
| GTTAGTTATGAAGCGTATAA+TGG | - | chr2_1:20827128-20827147 | None:intergenic | 30.0% | |
| CAAAAATTTCACCAATTGGT+GGG | - | chr2_1:20827155-20827174 | None:intergenic | 30.0% | |
| TCAAAAATTTCACCAATTGG+TGG | - | chr2_1:20827156-20827175 | None:intergenic | 30.0% | |
| ATCAGACCCACTAAAATTAA+AGG | - | chr2_1:20827207-20827226 | None:intergenic | 30.0% | |
| !! | TAATTTTAGTGGGTCTGATT+TGG | + | chr2_1:20827208-20827227 | Msa0200620:intron | 30.0% |
| TTAATAGATGCCAATCCATT+AGG | - | chr2_1:20827332-20827351 | None:intergenic | 30.0% | |
| !! | TTAATTGATGATGTGGTGAT+TGG | + | chr2_1:20827482-20827501 | Msa0200620:intron | 30.0% |
| TAGTGATTATTGTGGAATGA+TGG | + | chr2_1:20827560-20827579 | Msa0200620:intron | 30.0% | |
| AGTGATTATTGTGGAATGAT+GGG | + | chr2_1:20827561-20827580 | Msa0200620:intron | 30.0% | |
| GTATCAAATTATCATAAGCC+AGG | - | chr2_1:20827592-20827611 | None:intergenic | 30.0% | |
| ! | ATATTTTCGGTCATCATCAA+TGG | - | chr2_1:20827721-20827740 | None:intergenic | 30.0% |
| ! | CATGTGTGTTTTTCTGTTAT+TGG | + | chr2_1:20827852-20827871 | Msa0200620:intron | 30.0% |
| ! | TGTTTTTCTGTTATTGGGTT+TGG | + | chr2_1:20827858-20827877 | Msa0200620:intron | 30.0% |
| ! | TCTTCTCTAATATTTAGGAC+CGG | - | chr2_1:20827940-20827959 | None:intergenic | 30.0% |
| AGTGATTTATGAGTGTATTG+TGG | + | chr2_1:20828137-20828156 | Msa0200620:intron | 30.0% | |
| AAAAGGAAAAGAGAAAAGAG+AGG | - | chr2_1:20828542-20828561 | None:intergenic | 30.0% | |
| !! | TCCTTTTGATAATCTTAAGC+AGG | + | chr2_1:20828555-20828574 | Msa0200620:intron | 30.0% |
| ACCTGCTTAAGATTATCAAA+AGG | - | chr2_1:20828559-20828578 | None:intergenic | 30.0% | |
| ! | TGATAATCTTAAGCAGGTTT+TGG | + | chr2_1:20828561-20828580 | Msa0200620:intron | 30.0% |
| ! | GATAATCTTAAGCAGGTTTT+GGG | + | chr2_1:20828562-20828581 | Msa0200620:intron | 30.0% |
| ! | ATAATCTTAAGCAGGTTTTG+GGG | + | chr2_1:20828563-20828582 | Msa0200620:intron | 30.0% |
| !! | GTTTTATTAGACCCTAGATT+GGG | + | chr2_1:20828684-20828703 | Msa0200620:intron | 30.0% |
| ATTCAAATGCCATGTTTGAT+TGG | + | chr2_1:20828984-20829003 | Msa0200620:intron | 30.0% | |
| TTTGGAAGTCTATAAACGAT+CGG | + | chr2_1:20829055-20829074 | Msa0200620:intron | 30.0% | |
| ATTGTCTGAATAGGTAAGTT+TGG | + | chr2_1:20829208-20829227 | Msa0200620:intron | 30.0% | |
| CTCTCTTCAATTGAATTTGT+AGG | + | chr2_1:20829820-20829839 | Msa0200620:intron | 30.0% | |
| ! | TGATTCTCTTCAATTTTAGG+TGG | + | chr2_1:20829866-20829885 | Msa0200620:intron | 30.0% |
| ! | TCACTACTTGTTAATGTGAT+TGG | + | chr2_1:20830041-20830060 | Msa0200620:intron | 30.0% |
| !! | TTGACATTGTAAAAGTGTCT+AGG | - | chr2_1:20830074-20830093 | None:intergenic | 30.0% |
| TCAACAACTAGCATGATTTA+TGG | + | chr2_1:20830090-20830109 | Msa0200620:intron | 30.0% | |
| ! | TTTCAGGATGTGATACTTTT+AGG | + | chr2_1:20830224-20830243 | Msa0200620:intron | 30.0% |
| AAAAAGAGAGAAACGCACAA+CGG | + | chr2_1:20826949-20826968 | Msa0200620:five_prime_UTR | 35.0% | |
| AATTTCCCCCAAATTCGAAA+TGG | + | chr2_1:20826973-20826992 | Msa0200620:exon | 35.0% | |
| TCTTTCGCCATTTCGAATTT+GGG | - | chr2_1:20826983-20827002 | None:intergenic | 35.0% | |
| ! | ATGAAGCGTATAATGGAAAG+AGG | - | chr2_1:20827121-20827140 | None:intergenic | 35.0% |
| !! | TTTGTGATTTTTGGGCAGAT+TGG | + | chr2_1:20827232-20827251 | Msa0200620:intron | 35.0% |
| !! | CTTTGGCTAAATTTTTGGAG+AGG | + | chr2_1:20827294-20827313 | Msa0200620:CDS | 35.0% |
| !! | ATTTTTGGAGAGGAAGTTGA+AGG | + | chr2_1:20827304-20827323 | Msa0200620:CDS | 35.0% |
| ! | CAGCAATTTCAAGTAGATCA+GGG | - | chr2_1:20827355-20827374 | None:intergenic | 35.0% |
| ! | ACAGCAATTTCAAGTAGATC+AGG | - | chr2_1:20827356-20827375 | None:intergenic | 35.0% |
| TGCTGTTAAAAATGCCAAAC+AGG | + | chr2_1:20827370-20827389 | Msa0200620:CDS | 35.0% | |
| TAAGAGAAGAAATGGTGAAC+TGG | + | chr2_1:20827755-20827774 | Msa0200620:intron | 35.0% | |
| AAAACATTTCTTACTCCCTC+CGG | - | chr2_1:20828071-20828090 | None:intergenic | 35.0% | |
| TATGAGTGTATTGTGGTAAC+TGG | + | chr2_1:20828144-20828163 | Msa0200620:intron | 35.0% | |
| ATGTGATCTTTCCGATTTCA+TGG | + | chr2_1:20828192-20828211 | Msa0200620:intron | 35.0% | |
| !! | TATATTGTGTCTTGGCCTTT+TGG | + | chr2_1:20828285-20828304 | Msa0200620:intron | 35.0% |
| !! | ATATTGTGTCTTGGCCTTTT+GGG | + | chr2_1:20828286-20828305 | Msa0200620:intron | 35.0% |
| !! | TAATCTTAAGCAGGTTTTGG+GGG | + | chr2_1:20828564-20828583 | Msa0200620:intron | 35.0% |
| !! | ATGTAGAGGAATTTTGGTGT+TGG | + | chr2_1:20828601-20828620 | Msa0200620:intron | 35.0% |
| GAAAACTTACCTCCATATTG+CGG | - | chr2_1:20828630-20828649 | None:intergenic | 35.0% | |
| ! | GCAATATGGAGGTAAGTTTT+CGG | + | chr2_1:20828629-20828648 | Msa0200620:intron | 35.0% |
| ATCAATGTATTCGTTGTTGG+AGG | + | chr2_1:20828656-20828675 | Msa0200620:intron | 35.0% | |
| !!! | GGTTTTATTAGACCCTAGAT+TGG | + | chr2_1:20828683-20828702 | Msa0200620:intron | 35.0% |
| GAAAAGGCAATCACTTTCAA+AGG | - | chr2_1:20828756-20828775 | None:intergenic | 35.0% | |
| ! | TGAAAGTGATTGCCTTTTCT+TGG | + | chr2_1:20828757-20828776 | Msa0200620:intron | 35.0% |
| TTAGCAAGGTTAACTCTAGA+AGG | - | chr2_1:20828804-20828823 | None:intergenic | 35.0% | |
| TCACAAAACACACATCTAGT+AGG | - | chr2_1:20828852-20828871 | None:intergenic | 35.0% | |
| ! | CGATCGGATTTTTATTGATG+TGG | + | chr2_1:20829071-20829090 | Msa0200620:intron | 35.0% |
| ATCCTCATGATTGTCTGAAT+AGG | + | chr2_1:20829199-20829218 | Msa0200620:intron | 35.0% | |
| TACCTATTCAGACAATCATG+AGG | - | chr2_1:20829204-20829223 | None:intergenic | 35.0% | |
| TTCTGTTTAATTGGGTGCAT+TGG | + | chr2_1:20829459-20829478 | Msa0200620:intron | 35.0% | |
| !! | TTTAATTGGGTGCATTGGTT+TGG | + | chr2_1:20829464-20829483 | Msa0200620:intron | 35.0% |
| ATTACAACAACACCACCAAT+TGG | - | chr2_1:20829547-20829566 | None:intergenic | 35.0% | |
| !! | AATTTGCTGTTGATCGTTGT+AGG | + | chr2_1:20829564-20829583 | Msa0200620:intron | 35.0% |
| ATTATTACTCGTCTTGAGCT+CGG | + | chr2_1:20829657-20829676 | Msa0200620:intron | 35.0% | |
| ATAAGCTTTCCTGTCAGATA+TGG | + | chr2_1:20829729-20829748 | Msa0200620:intron | 35.0% | |
| ! | CCAATCAATTTTCATCTGTG+AGG | - | chr2_1:20830123-20830142 | None:intergenic | 35.0% |
| CCTCACAGATGAAAATTGAT+TGG | + | chr2_1:20830120-20830139 | Msa0200620:intron | 35.0% | |
| CACAGATGAAAATTGATTGG+TGG | + | chr2_1:20830123-20830142 | Msa0200620:intron | 35.0% | |
| ACGACTGTCTTGTGAAATTT+GGG | + | chr2_1:20830392-20830411 | Msa0200620:three_prime_UTR | 35.0% | |
| GGAATTAAATGTGACCCTAT+TGG | + | chr2_1:20830433-20830452 | Msa0200620:three_prime_UTR | 35.0% | |
| GTAGATTCAGATTTCAGAGC+CGG | + | chr2_1:20826850-20826869 | Msa0200620:intron | 40.0% | |
| TTTCGCCATTTCGAATTTGG+GGG | - | chr2_1:20826981-20827000 | None:intergenic | 40.0% | |
| CTTTCGCCATTTCGAATTTG+GGG | - | chr2_1:20826982-20827001 | None:intergenic | 40.0% | |
| CTCTTTCGCCATTTCGAATT+TGG | - | chr2_1:20826984-20827003 | None:intergenic | 40.0% | |
| TTGTGAGAGTTGGGAAGAAT+GGG | - | chr2_1:20827067-20827086 | None:intergenic | 40.0% | |
| TTTGTGAGAGTTGGGAAGAA+TGG | - | chr2_1:20827068-20827087 | None:intergenic | 40.0% | |
| GGTTTGGATTTGTGAGAGTT+GGG | - | chr2_1:20827076-20827095 | None:intergenic | 40.0% | |
| AACTAACGTAACCCACCAAT+TGG | + | chr2_1:20827141-20827160 | Msa0200620:intron | 40.0% | |
| TGTTGCGACAAATAAAGCAG+CGG | + | chr2_1:20827271-20827290 | Msa0200620:CDS | 40.0% | |
| !! | AGCGGCTTTGGCTAAATTTT+TGG | + | chr2_1:20827289-20827308 | Msa0200620:CDS | 40.0% |
| AGGAAGTTGAAGGAACCTAA+TGG | + | chr2_1:20827314-20827333 | Msa0200620:CDS | 40.0% | |
| ! | GTTGAAGGAACCTAATGGAT+TGG | + | chr2_1:20827319-20827338 | Msa0200620:CDS | 40.0% |
| ACTTGTAGAAACAGCCTGTT+TGG | - | chr2_1:20827387-20827406 | None:intergenic | 40.0% | |
| !! | CAGGCTGTTTCTACAAGTAA+TGG | + | chr2_1:20827389-20827408 | Msa0200620:intron | 40.0% |
| ! | GGAGTATTAAACACGGCAAA+AGG | - | chr2_1:20827915-20827934 | None:intergenic | 40.0% |
| ! | CTCTAATATTTAGGACCGGA+GGG | - | chr2_1:20827936-20827955 | None:intergenic | 40.0% |
| ! | TCTCTAATATTTAGGACCGG+AGG | - | chr2_1:20827937-20827956 | None:intergenic | 40.0% |
| ! | TCTCTTATATTTAGGACCGG+AGG | + | chr2_1:20828052-20828071 | Msa0200620:intron | 40.0% |
| ! | CTCTTATATTTAGGACCGGA+GGG | + | chr2_1:20828053-20828072 | Msa0200620:intron | 40.0% |
| TTGTGGTAACTGGTAAGACA+TGG | + | chr2_1:20828154-20828173 | Msa0200620:intron | 40.0% | |
| GGAAAGATCACATTGACAAC+TGG | - | chr2_1:20828185-20828204 | None:intergenic | 40.0% | |
| CAAACAAGTAACAACCAAGC+AGG | - | chr2_1:20828227-20828246 | None:intergenic | 40.0% | |
| AGGAACAAGTGTTACCCAAA+AGG | - | chr2_1:20828303-20828322 | None:intergenic | 40.0% | |
| CATGCGAGCAATCAAAAAGT+AGG | - | chr2_1:20828323-20828342 | None:intergenic | 40.0% | |
| TCTAATCTGGTCATGCATGA+AGG | - | chr2_1:20828353-20828372 | None:intergenic | 40.0% | |
| ! | CATGTCAACTGACTCTAATC+TGG | - | chr2_1:20828366-20828385 | None:intergenic | 40.0% |
| ATGGGAGATAAGAGAGAAGA+GGG | - | chr2_1:20828395-20828414 | None:intergenic | 40.0% | |
| AATGGGAGATAAGAGAGAAG+AGG | - | chr2_1:20828396-20828415 | None:intergenic | 40.0% | |
| TCCCATTTAAACCCGTTGTT+AGG | + | chr2_1:20828409-20828428 | Msa0200620:intron | 40.0% | |
| ! | CCCTAACAACGGGTTTAAAT+GGG | - | chr2_1:20828413-20828432 | None:intergenic | 40.0% |
| CCCATTTAAACCCGTTGTTA+GGG | + | chr2_1:20828410-20828429 | Msa0200620:intron | 40.0% | |
| CTATGAATTGCCCTAACAAC+GGG | - | chr2_1:20828423-20828442 | None:intergenic | 40.0% | |
| GCTATGAATTGCCCTAACAA+CGG | - | chr2_1:20828424-20828443 | None:intergenic | 40.0% | |
| CATATCCTAGAGCCAGATTA+GGG | + | chr2_1:20828459-20828478 | Msa0200620:intron | 40.0% | |
| !! | CCTAATCTGGCTCTAAGATA+TGG | - | chr2_1:20828501-20828520 | None:intergenic | 40.0% |
| CCATATCTTAGAGCCAGATT+AGG | + | chr2_1:20828498-20828517 | Msa0200620:intron | 40.0% | |
| TGCATGTTGAGTTCCTAATC+TGG | - | chr2_1:20828514-20828533 | None:intergenic | 40.0% | |
| !!! | AATCTTAAGCAGGTTTTGGG+GGG | + | chr2_1:20828565-20828584 | Msa0200620:intron | 40.0% |
| GTATTCGTTGTTGGAGGATT+TGG | + | chr2_1:20828662-20828681 | Msa0200620:intron | 40.0% | |
| ACAAAGGAGCTTCCAAGAAA+AGG | - | chr2_1:20828772-20828791 | None:intergenic | 40.0% | |
| TAGAAGGAATGCGATCACAA+AGG | - | chr2_1:20828788-20828807 | None:intergenic | 40.0% | |
| TAAGCGTAATGTGCTTGATC+AGG | + | chr2_1:20828821-20828840 | Msa0200620:intron | 40.0% | |
| ! | GATGTGTGTTTTGTGACAAG+CGG | + | chr2_1:20828856-20828875 | Msa0200620:intron | 40.0% |
| CTTGTTTGAACTGTTGTCCA+AGG | + | chr2_1:20828917-20828936 | Msa0200620:intron | 40.0% | |
| AACTGTTGTCCAAGGTGAAT+TGG | + | chr2_1:20828925-20828944 | Msa0200620:intron | 40.0% | |
| TTTGATTGGTGAGTCCACAA+GGG | + | chr2_1:20828998-20829017 | Msa0200620:intron | 40.0% | |
| CTATTAACCAATACCCCTTG+TGG | - | chr2_1:20829015-20829034 | None:intergenic | 40.0% | |
| !! | CACAAGGGGTATTGGTTAAT+AGG | + | chr2_1:20829013-20829032 | Msa0200620:intron | 40.0% |
| TTAATAGGCACGTGGCAATT+TGG | + | chr2_1:20829028-20829047 | Msa0200620:intron | 40.0% | |
| TAATAGGCACGTGGCAATTT+GGG | + | chr2_1:20829029-20829048 | Msa0200620:intron | 40.0% | |
| !!! | CGCCATTTTTGAGGGAATTA+AGG | + | chr2_1:20829107-20829126 | Msa0200620:intron | 40.0% |
| CGCCTTAATTCCCTCAAAAA+TGG | - | chr2_1:20829112-20829131 | None:intergenic | 40.0% | |
| GAATTAAGGCGATATCAGGT+AGG | + | chr2_1:20829121-20829140 | Msa0200620:intron | 40.0% | |
| TCCAACACCATTCATAGAAG+AGG | - | chr2_1:20829179-20829198 | None:intergenic | 40.0% | |
| TTTGAGTCTTTGCTGCTGTT+TGG | + | chr2_1:20829364-20829383 | Msa0200620:intron | 40.0% | |
| TGGCAGCAGTTCTGTTTAAT+TGG | + | chr2_1:20829450-20829469 | Msa0200620:intron | 40.0% | |
| GGCAGCAGTTCTGTTTAATT+GGG | + | chr2_1:20829451-20829470 | Msa0200620:intron | 40.0% | |
| !! | TTTGCCTAATGGTGGATGTA+GGG | + | chr2_1:20829508-20829527 | Msa0200620:intron | 40.0% |
| GCAAGAACCGAACAAATACA+AGG | - | chr2_1:20829609-20829628 | None:intergenic | 40.0% | |
| AGGATGACAAAGATGCAGAT+AGG | + | chr2_1:20830244-20830263 | Msa0200620:exon | 40.0% | |
| GGATGACAAAGATGCAGATA+GGG | + | chr2_1:20830245-20830264 | Msa0200620:exon | 40.0% | |
| CACGACTGTCTTGTGAAATT+TGG | + | chr2_1:20830391-20830410 | Msa0200620:three_prime_UTR | 40.0% | |
| !! | GGGTCTAGTTTCCTTTTCTT+AGG | + | chr2_1:20830412-20830431 | Msa0200620:three_prime_UTR | 40.0% |
| !!! | CATTGGTAGGTTTTGAATGC+AGG | + | chr2_1:20830536-20830555 | Msa0200620:three_prime_UTR | 40.0% |
| GGGTTTGGATTTGTGAGAGT+TGG | - | chr2_1:20827077-20827096 | None:intergenic | 45.0% | |
| ACTCTCACAAATCCAAACCC+AGG | + | chr2_1:20827077-20827096 | Msa0200620:CDS | 45.0% | |
| AAACCCAGGTACGCTTCTAA+GGG | + | chr2_1:20827091-20827110 | Msa0200620:intron | 45.0% | |
| ! | AAACCCTTAGAAGCGTACCT+GGG | - | chr2_1:20827097-20827116 | None:intergenic | 45.0% |
| ! | AAAACCCTTAGAAGCGTACC+TGG | - | chr2_1:20827098-20827117 | None:intergenic | 45.0% |
| !! | GCTGCTTTATTTGTCGCAAC+AGG | - | chr2_1:20827272-20827291 | None:intergenic | 45.0% |
| GACAAATAAAGCAGCGGCTT+TGG | + | chr2_1:20827277-20827296 | Msa0200620:CDS | 45.0% | |
| !! | ACCGGAGGGAGTATTAAACA+CGG | - | chr2_1:20827922-20827941 | None:intergenic | 45.0% |
| GGAAAGCTCGACCATGAAAT+CGG | - | chr2_1:20828206-20828225 | None:intergenic | 45.0% | |
| TGGGAGATAAGAGAGAAGAG+GGG | - | chr2_1:20828394-20828413 | None:intergenic | 45.0% | |
| ! | GCCCTAACAACGGGTTTAAA+TGG | - | chr2_1:20828414-20828433 | None:intergenic | 45.0% |
| GGATATGGTGTCTTCATGTG+TGG | - | chr2_1:20828446-20828465 | None:intergenic | 45.0% | |
| !! | CCTAATCTGGCTCTAGGATA+TGG | - | chr2_1:20828461-20828480 | None:intergenic | 45.0% |
| CCATATCCTAGAGCCAGATT+AGG | + | chr2_1:20828458-20828477 | Msa0200620:intron | 45.0% | |
| !!! | ATCTTAAGCAGGTTTTGGGG+GGG | + | chr2_1:20828566-20828585 | Msa0200620:intron | 45.0% |
| ! | GGTCGGATGTAGAGGAATTT+TGG | + | chr2_1:20828595-20828614 | Msa0200620:intron | 45.0% |
| ATTAGACCCTAGATTGGGTG+AGG | + | chr2_1:20828689-20828708 | Msa0200620:intron | 45.0% | |
| TGTGTCTTTGTGGAAAAGCC+CGG | + | chr2_1:20828728-20828747 | Msa0200620:intron | 45.0% | |
| CAAGCACATTACGCTTAGCA+AGG | - | chr2_1:20828818-20828837 | None:intergenic | 45.0% | |
| TTGTCCAAGGTGAATTGGCT+AGG | + | chr2_1:20828930-20828949 | Msa0200620:intron | 45.0% | |
| GTGGACTCACCAATCAAACA+TGG | - | chr2_1:20828996-20829015 | None:intergenic | 45.0% | |
| GTTTGATTGGTGAGTCCACA+AGG | + | chr2_1:20828997-20829016 | Msa0200620:intron | 45.0% | |
| TTGATTGGTGAGTCCACAAG+GGG | + | chr2_1:20828999-20829018 | Msa0200620:intron | 45.0% | |
| !! | GGTATTGGTTAATAGGCACG+TGG | + | chr2_1:20829020-20829039 | Msa0200620:intron | 45.0% |
| ACGTGGCAATTTGGGTACTT+TGG | + | chr2_1:20829037-20829056 | Msa0200620:intron | 45.0% | |
| !!! | AGCGTTGACGCCATTTTTGA+GGG | + | chr2_1:20829099-20829118 | Msa0200620:intron | 45.0% |
| GAGGGAATTAAGGCGATATC+AGG | + | chr2_1:20829117-20829136 | Msa0200620:intron | 45.0% | |
| TTAAGGCGATATCAGGTAGG+TGG | + | chr2_1:20829124-20829143 | Msa0200620:intron | 45.0% | |
| ATATCAGGTAGGTGGCATCT+TGG | + | chr2_1:20829132-20829151 | Msa0200620:intron | 45.0% | |
| CATTCATAGAAGAGGCAAGG+AGG | - | chr2_1:20829171-20829190 | None:intergenic | 45.0% | |
| CTCCTTGCCTCTTCTATGAA+TGG | + | chr2_1:20829169-20829188 | Msa0200620:intron | 45.0% | |
| CACCATTCATAGAAGAGGCA+AGG | - | chr2_1:20829174-20829193 | None:intergenic | 45.0% | |
| GCCTCTTCTATGAATGGTGT+TGG | + | chr2_1:20829175-20829194 | Msa0200620:intron | 45.0% | |
| !! | AGCCTTTGGTGTTTGCCTAA+TGG | + | chr2_1:20829497-20829516 | Msa0200620:intron | 45.0% |
| CACCATTAGGCAAACACCAA+AGG | - | chr2_1:20829502-20829521 | None:intergenic | 45.0% | |
| !! | CTTTGGTGTTTGCCTAATGG+TGG | + | chr2_1:20829500-20829519 | Msa0200620:intron | 45.0% |
| !! | GTTTGCCTAATGGTGGATGT+AGG | + | chr2_1:20829507-20829526 | Msa0200620:intron | 45.0% |
| !! | TTGCCTAATGGTGGATGTAG+GGG | + | chr2_1:20829509-20829528 | Msa0200620:intron | 45.0% |
| TGCTTTGATGTGCCAATTGG+TGG | + | chr2_1:20829532-20829551 | Msa0200620:intron | 45.0% | |
| ACCAAGCTCAAGACGAACAA+GGG | - | chr2_1:20829634-20829653 | None:intergenic | 45.0% | |
| AACCAAGCTCAAGACGAACA+AGG | - | chr2_1:20829635-20829654 | None:intergenic | 45.0% | |
| GGAACAAAATGATCTCCCTG+CGG | + | chr2_1:20829955-20829974 | Msa0200620:CDS | 45.0% | |
| AAATGATCTCCCTGCGGTAA+AGG | + | chr2_1:20829961-20829980 | Msa0200620:CDS | 45.0% | |
| TCTTGCATTCCTTTACCGCA+GGG | - | chr2_1:20829973-20829992 | None:intergenic | 45.0% | |
| TTCTTGCATTCCTTTACCGC+AGG | - | chr2_1:20829974-20829993 | None:intergenic | 45.0% | |
| GAGTTGGGAAGAATGGGAAG+AGG | - | chr2_1:20827061-20827080 | None:intergenic | 50.0% | |
| ! | CTTAGAAGCGTACCTGGGTT+TGG | - | chr2_1:20827092-20827111 | None:intergenic | 50.0% |
| CAAACCCAGGTACGCTTCTA+AGG | + | chr2_1:20827090-20827109 | Msa0200620:intron | 50.0% | |
| !! | GTGGAATGATGGGTTTGACC+TGG | + | chr2_1:20827571-20827590 | Msa0200620:intron | 50.0% |
| GCCGTGTTTAATACTCCCTC+CGG | + | chr2_1:20827918-20827937 | Msa0200620:intron | 50.0% | |
| !! | TGTGTCCCTAATCTGGCTCT+AGG | - | chr2_1:20828467-20828486 | None:intergenic | 50.0% |
| TGCATGCTGTGTCCCTAATC+TGG | - | chr2_1:20828474-20828493 | None:intergenic | 50.0% | |
| !! | TGGTGTTGGTGTCCGCAATA+TGG | + | chr2_1:20828615-20828634 | Msa0200620:intron | 50.0% |
| ! | TGTTGGTGTCCGCAATATGG+AGG | + | chr2_1:20828618-20828637 | Msa0200620:intron | 50.0% |
| AACGCGCGTTTGTGTCTTTG+TGG | + | chr2_1:20828718-20828737 | Msa0200620:intron | 50.0% | |
| GTGTCTTTGTGGAAAAGCCC+GGG | + | chr2_1:20828729-20828748 | Msa0200620:intron | 50.0% | |
| TGTCTTTGTGGAAAAGCCCG+GGG | + | chr2_1:20828730-20828749 | Msa0200620:intron | 50.0% | |
| CAATCACTTTCAAAGGCCCC+GGG | - | chr2_1:20828749-20828768 | None:intergenic | 50.0% | |
| GCAATCACTTTCAAAGGCCC+CGG | - | chr2_1:20828750-20828769 | None:intergenic | 50.0% | |
| ! | GTGTGTTTTGTGACAAGCGG+AGG | + | chr2_1:20828859-20828878 | Msa0200620:intron | 50.0% |
| GATGCCTAGCCAATTCACCT+TGG | - | chr2_1:20828937-20828956 | None:intergenic | 50.0% | |
| !!! | GAGCGTTGACGCCATTTTTG+AGG | + | chr2_1:20829098-20829117 | Msa0200620:intron | 50.0% |
| !! | GTTTGGTGTGCTGTAGCTTC+AGG | + | chr2_1:20829225-20829244 | Msa0200620:intron | 50.0% |
| CTGCTGTGTCTGGATGTTTC+AGG | + | chr2_1:20829298-20829317 | Msa0200620:intron | 50.0% | |
| ! | GTGTCTGGATGTTTCAGGTC+TGG | + | chr2_1:20829303-20829322 | Msa0200620:intron | 50.0% |
| !!! | GCGTTTGGGGGTTGTTTTTC+TGG | + | chr2_1:20829408-20829427 | Msa0200620:intron | 50.0% |
| !!! | TGGGGGTTGTTTTTCTGGTC+TGG | + | chr2_1:20829413-20829432 | Msa0200620:intron | 50.0% |
| !! | TTGGGTGCATTGGTTTGGTC+TGG | + | chr2_1:20829469-20829488 | Msa0200620:intron | 50.0% |
| !! | TGGGTGCATTGGTTTGGTCT+GGG | + | chr2_1:20829470-20829489 | Msa0200620:intron | 50.0% |
| GGGTGCTTTGATGTGCCAAT+TGG | + | chr2_1:20829529-20829548 | Msa0200620:intron | 50.0% | |
| CCAAGCTCAAGACGAACAAG+GGG | - | chr2_1:20829633-20829652 | None:intergenic | 50.0% | |
| GTCCGGCATGTAGTATCCTT+TGG | + | chr2_1:20829911-20829930 | Msa0200620:CDS | 50.0% | |
| CGCCAAAGGATACTACATGC+CGG | - | chr2_1:20829916-20829935 | None:intergenic | 50.0% | |
| ACTTGCATCTGAGTCGCCAA+AGG | - | chr2_1:20829930-20829949 | None:intergenic | 50.0% | |
| CGACTCAGATGCAAGTGAAG+AGG | + | chr2_1:20829934-20829953 | Msa0200620:CDS | 50.0% | |
| ! | TTGGGCAGATTGGCTCATCC+TGG | + | chr2_1:20827242-20827261 | Msa0200620:intron | 55.0% |
| TTTGTCGCAACAGGTCCACC+AGG | - | chr2_1:20827263-20827282 | None:intergenic | 55.0% | |
| CATGGTCGAGCTTTCCTGCT+TGG | + | chr2_1:20828210-20828229 | Msa0200620:intron | 55.0% | |
| !! | TTTTGGGGGGGTGAGATGGT+CGG | + | chr2_1:20828578-20828597 | Msa0200620:intron | 55.0% |
| GGTGAGATGGTCGGATGTAG+AGG | + | chr2_1:20828587-20828606 | Msa0200620:intron | 55.0% | |
| AGACCCTAGATTGGGTGAGG+CGG | + | chr2_1:20828692-20828711 | Msa0200620:intron | 55.0% | |
| ! | GGTGAGTCCACAAGGGGTAT+TGG | + | chr2_1:20829005-20829024 | Msa0200620:intron | 55.0% |
| GCTGTAGCTTCAGGCACTCT+TGG | + | chr2_1:20829234-20829253 | Msa0200620:intron | 55.0% | |
| TAGCTTCAGGCACTCTTGGC+AGG | + | chr2_1:20829238-20829257 | Msa0200620:intron | 55.0% | |
| AGCTTCAGGCACTCTTGGCA+GGG | + | chr2_1:20829239-20829258 | Msa0200620:intron | 55.0% | |
| ! | GTTGGTCTGCTGAAGCAGTC+TGG | + | chr2_1:20829266-20829285 | Msa0200620:intron | 55.0% |
| CATCCAGACACAGCAGACAG+CGG | - | chr2_1:20829294-20829313 | None:intergenic | 55.0% | |
| TCTGCTGAGCAGTGTGCGTT+TGG | + | chr2_1:20829393-20829412 | Msa0200620:intron | 55.0% | |
| CTGCTGAGCAGTGTGCGTTT+GGG | + | chr2_1:20829394-20829413 | Msa0200620:intron | 55.0% | |
| TGCTGAGCAGTGTGCGTTTG+GGG | + | chr2_1:20829395-20829414 | Msa0200620:intron | 55.0% | |
| TTGGTCTGGGCAGTAGCCTT+TGG | + | chr2_1:20829483-20829502 | Msa0200620:intron | 55.0% | |
| GCACCCCTACATCCACCATT+AGG | - | chr2_1:20829515-20829534 | None:intergenic | 55.0% | |
| CCCCTTGTTCGTCTTGAGCT+TGG | + | chr2_1:20829630-20829649 | Msa0200620:intron | 55.0% | |
| GATGAACGACGCGCACTTCG+TGG | + | chr2_1:20827022-20827041 | Msa0200620:CDS | 60.0% | |
| ! | GGCAGATTGGCTCATCCTGG+TGG | + | chr2_1:20827245-20827264 | Msa0200620:intron | 60.0% |
| !!! | CAGGTTTTGGGGGGGTGAGA+TGG | + | chr2_1:20828574-20828593 | Msa0200620:intron | 60.0% |
| CCTCCGCCTCACCCAATCTA+GGG | - | chr2_1:20828698-20828717 | None:intergenic | 60.0% | |
| TCCTCCGCCTCACCCAATCT+AGG | - | chr2_1:20828699-20828718 | None:intergenic | 60.0% | |
| GCTTCAGGCACTCTTGGCAG+GGG | + | chr2_1:20829240-20829259 | Msa0200620:intron | 60.0% | |
| ! | CACTCTTGGCAGGGGTGTGT+TGG | + | chr2_1:20829248-20829267 | Msa0200620:intron | 60.0% |
| GTTCCGCTGTCTGCTGTGTC+TGG | + | chr2_1:20829288-20829307 | Msa0200620:intron | 60.0% | |
| GCTGAGCAGTGTGCGTTTGG+GGG | + | chr2_1:20829396-20829415 | Msa0200620:intron | 60.0% | |
| TCTGGTCTGGCTGTGTCCCT+CGG | + | chr2_1:20829426-20829445 | Msa0200620:intron | 60.0% | |
| ACAGAACTGCTGCCAGCCGA+GGG | - | chr2_1:20829445-20829464 | None:intergenic | 60.0% | |
| AACAGAACTGCTGCCAGCCG+AGG | - | chr2_1:20829446-20829465 | None:intergenic | 60.0% | |
| CCCTAGATTGGGTGAGGCGG+AGG | + | chr2_1:20828695-20828714 | Msa0200620:intron | 65.0% | |
| GTCTGGCTGTGTCCCTCGGC+TGG | + | chr2_1:20829430-20829449 | Msa0200620:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 20826819 | 20830591 | 20826819 | ID=Msa0200620;Name=Msa0200620 |
| chr2_1 | mRNA | 20826819 | 20830591 | 20826819 | ID=Msa0200620-mRNA-1;Parent=Msa0200620;Name=Msa0200620-mRNA-1;_AED=0.05;_eAED=0.05;_QI=85|1|1|1|0.5|0.4|5|341|145 |
| chr2_1 | exon | 20826819 | 20826838 | 20826819 | ID=Msa0200620-mRNA-1:exon:8504;Parent=Msa0200620-mRNA-1 |
| chr2_1 | exon | 20826927 | 20827098 | 20826927 | ID=Msa0200620-mRNA-1:exon:8505;Parent=Msa0200620-mRNA-1 |
| chr2_1 | exon | 20827250 | 20827404 | 20827250 | ID=Msa0200620-mRNA-1:exon:8506;Parent=Msa0200620-mRNA-1 |
| chr2_1 | exon | 20829885 | 20830039 | 20829885 | ID=Msa0200620-mRNA-1:exon:8507;Parent=Msa0200620-mRNA-1 |
| chr2_1 | exon | 20830230 | 20830591 | 20830230 | ID=Msa0200620-mRNA-1:exon:8508;Parent=Msa0200620-mRNA-1 |
| chr2_1 | five_prime_UTR | 20826819 | 20826838 | 20826819 | ID=Msa0200620-mRNA-1:five_prime_utr;Parent=Msa0200620-mRNA-1 |
| chr2_1 | five_prime_UTR | 20826927 | 20826991 | 20826927 | ID=Msa0200620-mRNA-1:five_prime_utr;Parent=Msa0200620-mRNA-1 |
| chr2_1 | CDS | 20826992 | 20827098 | 20826992 | ID=Msa0200620-mRNA-1:cds;Parent=Msa0200620-mRNA-1 |
| chr2_1 | CDS | 20827250 | 20827404 | 20827250 | ID=Msa0200620-mRNA-1:cds;Parent=Msa0200620-mRNA-1 |
| chr2_1 | CDS | 20829885 | 20830039 | 20829885 | ID=Msa0200620-mRNA-1:cds;Parent=Msa0200620-mRNA-1 |
| chr2_1 | CDS | 20830230 | 20830250 | 20830230 | ID=Msa0200620-mRNA-1:cds;Parent=Msa0200620-mRNA-1 |
| chr2_1 | three_prime_UTR | 20830251 | 20830591 | 20830251 | ID=Msa0200620-mRNA-1:three_prime_utr;Parent=Msa0200620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
