AlfalfaGEDB | Msa0281690

M. sativa cultivar zhongmu-4 / Msa0281690

KEGG: K10875
GO: GO:0000003 GO:0000018 GO:0000166 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022402 GO:0022414 GO:0030491 GO:0030554 GO:0030702 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032553 GO:0032555 GO:0032559 GO:0033170 GO:0034641 GO:0035639 GO:0035822 GO:0035825 GO:0035861 GO:0036094 GO:0040029 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051321 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0097367 GO:0140013 GO:0140097 GO:0140110 GO:1901265 GO:1901360 GO:1901363 GO:1902679 GO:1902680 GO:1903046 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00176.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0281690	XP_013463305.1	95.494	1043	46	1	68	1110	1	1042	0.0	2031

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0281690	sp\|Q9SIW2\|CHR35_ARATH	56.968	818	278	15	311	1110	127	888	0.0	905

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0281690	A0A072V6S6	95.494	1043	46	1	68	1110	1	1042	0.0	2031

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TFs/TRs:

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Gene ID	Type	Classification
Msa0281690	TR	SNF2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0243300	Msa0281690	0.938312	8.286974e-99	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0281690	MtrunA17_Chr2g0296421	95.494	1043	46	1	68	1110	1	1042	0.0	2031
Msa0281690	MtrunA17_Chr8g0352361	80.250	800	138	8	315	1110	110	893	0.0	1288
Msa0281690	MtrunA17_Chr8g0352361	51.515	165	55	5	66	224	10	155	2.39e-34	142
Msa0281690	MtrunA17_Chr1g0191141	31.062	763	407	21	407	1069	315	1058	9.30e-94	324
Msa0281690	MtrunA17_Chr7g0224051	31.457	693	388	19	457	1069	387	1072	4.92e-88	308
Msa0281690	MtrunA17_Chr3g0114161	31.304	690	376	21	466	1069	526	1203	1.56e-86	305
Msa0281690	MtrunA17_Chr7g0225791	31.277	697	357	20	455	1069	584	1240	1.63e-85	303
Msa0281690	MtrunA17_Chr4g0047081	30.482	643	344	17	500	1069	578	1190	9.45e-81	288
Msa0281690	MtrunA17_Chr5g0437621	29.343	685	400	19	462	1069	582	1259	1.04e-79	286
Msa0281690	MtrunA17_Chr7g0233021	31.562	640	348	22	500	1069	567	1186	9.76e-78	279

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0281690	AT2G16390.2	57.004	821	273	16	311	1110	130	891	0.0	906
Msa0281690	AT2G16390.1	56.968	818	278	15	311	1110	127	888	0.0	905
Msa0281690	AT2G21450.3	54.478	670	282	5	461	1110	57	723	0.0	753
Msa0281690	AT2G21450.1	54.478	670	282	5	461	1110	148	814	0.0	753
Msa0281690	AT2G21450.2	54.478	670	282	5	461	1110	155	821	0.0	752
Msa0281690	AT1G05490.1	30.540	704	378	22	452	1069	675	1353	8.83e-90	317
Msa0281690	AT3G42670.4	28.404	683	405	14	462	1069	539	1212	8.14e-81	289
Msa0281690	AT3G42670.2	28.341	681	406	14	462	1069	539	1210	3.30e-80	287
Msa0281690	AT3G42670.3	28.341	681	406	14	462	1069	539	1210	3.30e-80	287
Msa0281690	AT3G42670.1	28.341	681	406	14	462	1069	539	1210	3.30e-80	287

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Find 212 sgRNAs with CRISPR-Local

Find 494 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCAACAATTCACCCG+AGG	0.695204	2_3:+17289753	Msa0281690:CDS
AAACACTTTGCAGAAGGATC+CGG	0.477672	2_3:+17289219	Msa0281690:CDS
AAAGACAAAGGTAATTATGT+TGG	0.466178	2_3:+17286833	Msa0281690:CDS
AAAGACAAAGGTCTTTATGT+TGG	0.511523	2_3:+17286920	Msa0281690:CDS
AAAGCTTCTCACCAGCTGAT+TGG	0.482830	2_3:-17289594	None:intergenic
AAATCATCCACCCGAAGAAG+AGG	0.565897	2_3:+17287827	Msa0281690:CDS
AAATGGAAGGGCTGGAGTCT+TGG	0.448957	2_3:+17289670	Msa0281690:CDS
AACCTATTGTCCAACGCATT+AGG	0.441584	2_3:+17289149	Msa0281690:CDS
AACCTGGTGGGAGACCATCC+TGG	0.468533	2_3:+17288587	Msa0281690:CDS
AAGAAGAAGAGTGAGAGAAT+AGG	0.395895	2_3:-17283380	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAAGGAAGAATGTAATAC+CGG	-	chr2_3:17283464-17283483	None:intergenic	30.0%
AGAAATAAGCTGTAACAAAC+GGG	+	chr2_3:17283623-17283642	Msa0281690:intron	30.0%
ATATATTGATCCATGGACAA+TGG	-	chr2_3:17283674-17283693	None:intergenic	30.0%
TTAGTCTCGAAATGAAATGA+GGG	+	chr2_3:17283944-17283963	Msa0281690:intron	30.0%
CATGAAGTAATCCATTTGTT+TGG	+	chr2_3:17283977-17283996	Msa0281690:intron	30.0%
AAGTAATCCATTTGTTTGGA+TGG	+	chr2_3:17283981-17284000	Msa0281690:intron	30.0%
CAGGTTTATAACAATGATGA+AGG	-	chr2_3:17284140-17284159	None:intergenic	30.0%
AACCATGTGATATGAAATGA+TGG	+	chr2_3:17284191-17284210	Msa0281690:intron	30.0%
TGATATGAAATGATGGCTTT+AGG	+	chr2_3:17284198-17284217	Msa0281690:intron	30.0%
ACCCAGAAAATGCAAATATT+AGG	+	chr2_3:17284858-17284877	Msa0281690:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	17283229	17290237	17283229	ID=Msa0281690;Name=Msa0281690
chr2_3	mRNA	17283229	17290237	17283229	ID=Msa0281690-mRNA-1;Parent=Msa0281690;Name=Msa0281690-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0.2\|0\|0.83\|1\|1\|6\|0\|1110
chr2_3	exon	17283229	17283463	17283229	ID=Msa0281690-mRNA-1:exon:7123;Parent=Msa0281690-mRNA-1
chr2_3	exon	17284685	17285607	17284685	ID=Msa0281690-mRNA-1:exon:7124;Parent=Msa0281690-mRNA-1
chr2_3	exon	17286746	17287036	17286746	ID=Msa0281690-mRNA-1:exon:7125;Parent=Msa0281690-mRNA-1
chr2_3	exon	17287816	17287965	17287816	ID=Msa0281690-mRNA-1:exon:7126;Parent=Msa0281690-mRNA-1
chr2_3	exon	17288410	17290139	17288410	ID=Msa0281690-mRNA-1:exon:7127;Parent=Msa0281690-mRNA-1
chr2_3	exon	17290234	17290237	17290234	ID=Msa0281690-mRNA-1:exon:7128;Parent=Msa0281690-mRNA-1
chr2_3	CDS	17283229	17283463	17283229	ID=Msa0281690-mRNA-1:cds;Parent=Msa0281690-mRNA-1
chr2_3	CDS	17284685	17285607	17284685	ID=Msa0281690-mRNA-1:cds;Parent=Msa0281690-mRNA-1
chr2_3	CDS	17286746	17287036	17286746	ID=Msa0281690-mRNA-1:cds;Parent=Msa0281690-mRNA-1
chr2_3	CDS	17287816	17287965	17287816	ID=Msa0281690-mRNA-1:cds;Parent=Msa0281690-mRNA-1
chr2_3	CDS	17288410	17290139	17288410	ID=Msa0281690-mRNA-1:cds;Parent=Msa0281690-mRNA-1
chr2_3	CDS	17290234	17290237	17290234	ID=Msa0281690-mRNA-1:cds;Parent=Msa0281690-mRNA-1

Gene Sequence

>Msa0281690

ATGCATCATGACACCCACGGTAAGAAGGAGTCACAGAGAATAATTACCCTCCCTGCAAAACTTAGCTCATACGGTAGCATTTGGCTTTTCATTTCCAACAAAGAAACCCAAAAGCCACACTCACATTCTTCTTCATTTCAATCCTCAAAACCCTATTCTCTCACTCTTCTTCTTCTTCCTAAACGCTTCCAAATTTCATCAATGGCGTCCTCCAGCAAACGCCCTGCTTCAACCGGAATTTCGCCTGAAGAAGGACACAAAAAACTTAAACTGTCAAGTGATCGCTTGCCATGTTTAACACATGGTGATGTTGTAGATTACAGCAGTCCGTATGCAATTTCAAATGTTATAAATCGCTTAGAGAGTGGAAAATTTGGAAGTGTGACAAAAAATATTAAAGACCTTATAACCCAGAAAATGCAAATATTAGGCCCTTACTTTGCAAAATGTCCTAGACTTGCTAATCAACTATTGAGAGTGGTGACAGATCATGATGAAGAAACTCCCAACATGGAAAATAAGAATGTTACTGGTTTGCAACATCATAATGTCATAGATTTGGATTCGGACGGGGAGCACACCGAAAAGGATGTTTTGGCACCAGAAAAAGGATATAATGTTACTGCAGTACCATTTATCATTGATTCAGATGAGGAGGATGATAAGGATCATGGTCATGATACTGTTCCAACAGATCATGATGAAGAAACTCCCTACATTGAAAGTGAAAAAGCTCCTGGTATCTCCCATCAAAATGTTACCATTGATTCAAGTGAGGAAGATGATAGGGATCAAAAAGAGGATGTTTTGGCACCAAGAAGAGAAAAAGATGTTCCTCCAGCACCATTTCATGAAGTCATCATCATTGATTTGGATGAGGAAGATGATAAGGATCATGATGAAGAAACTCCCAACATGGAAAATGAAAAAGTTACTCCTATGTCCTATCAAAATGTTATCATCGATTCAGTTGAGGAAGATGATAGGGATCATGATGAAGGAACTCCCAACATGGAAAATGAAAAAGTTACCGGGATGTCCTATCAAAATGTTATCATTGATTCAAATGGGGAAGATGACAAAGATGAAACTTCTGTTCTTCCATTTCATGAAGTTGCATTGCCAAAACCAGTTCAGTCTCCTGCATTAGAAATGATTGGATATCATGATCCCAATGCTTACCATGGAGGAGAACATGCAGATCTAAAATTTGAAACAAGTCTGCTTCCTAAAGATAACACAAAGAAAGACAAAGGTAATTATGTTGGAGTACATGAGGAAGAAGATAATAAGGAATTTGAAACAAGTCTGTCTCCTGAAGATAACACAAAGAAAGACAAAGGTCTTTATGTTGGTGTACGTGAGGAAGAAGATAACAAGGTTGATACTGAAGATGACGGGCTAGAAGATGTTTGGAGGGAGATGGCAATGGCAATGGAAACTTCTAAAGATGTTTCTGCAAATCATCCACCCGAAGAAGAGGAAAATGACGCTGACTGTGATCATTCTTTCATTTTAAAAGACGATCTTGGTTATGTTTGTCGCGTTTGTGGGGTTATTGACAGAGGAATTGAAACCATATTTGAGTTCCAATACAAGGTTAAAAAGAGCACAAGAACTTATATGTCTGAATCATGGAATGCCCAAGAAAAAGCTGATATATTTGGAGTTAAGATTGCTAAAGACGATCTCTCAGTAACTGAAATATCAGCACATCCTCGACATGCAAATCAAATGAAACCGCACCAAGTCGAAGGATTCAATTTTCTTGTCAGAAACCTGGTGGGAGACCATCCTGGGGGATGCATTCTGGCTCATGCTCCAGGATCTGGAAAGACATTCATGGTTATCTGTTTCATACAGAGTTTTCTAGAGAAGTATCCCGATGCACGACCTCTCGTGGTGCTTCCTAAGGGAATACTATCGACTTGGAAAAAGGAGTTTCTGACATGGCAAGTGGAAGATGTACCACTTTATGATTTTTACAGTGTGAAGGCTGACAGTAGATCACAACAATTGGAAGTCTTAAAACAGTGGGTGGATAACAAGAGTATCCTTTTCTTAGGATACCAACAGTTTTCGTCCATTATCTGTGATAACTGTAATAACAATACATCAATATCTTGCCAAGATATATTGCTTAAGAAACCGTCAATTCTCATTTTAGATGAGGGACACACTCCTAGGAACGAGAATACTGATACGGTACAGTCCCTCGCAAAAGTACAAACACCAAGAAAAGTTGTTTTGTCCGGGACTTTATATCAAAATCATGTCAAGGAGGTATTTAACGTGCTTAACCTTGTCCGCCCAAAGTTTATAAAGATGGAAACATCTAAACCTATTGTCCAACGCATTAGGAGTAGGATCCATTTACCTGGTGTGAAAGACTTCTGTGATTTGGTTGAAAACACTTTGCAGAAGGATCCGGATTTTAAAAGGAAAGTAGCTGTTATACATGATTTGCGGGAGATGACCAGCAAGGTACTGCACTACTATAAAGGAGATTTTCTTGATGAGCTTCCTGGCCTAGTTGATTTTACTGTGGTGCTCAACATGACACCCAGGCAAAAGCATGAAGTTAAGACAATAAAGAGGGTATTTAGAAAGTTCAAGATGTCTTCTGTAGGTAGTGCTGTATACCTGCACCCAGACTTGAAACCAATTGCAGAGAAATGTAGTGAAAATTCTATATCTGAGCATACAATGGATGATCTAATAGCGAACCAAGATGTGAGAGACGGGGTGAAATTAAAATTCTTTCGCAATATGCTGAATCTATGCCAATCAGCTGGTGAGAAGCTTTTGGTGTTCAGTCAATATCTCTTGCCTCTAAAATATTTGGAAAGGTTAGCTATGAAATGGAAGGGCTGGAGTCTTGGCAAAGAAATTTTTGTAATATCAGGAGAATCGTCCACTGAACAAAGGGAGTGCTCCATGGAAAAATTCAACAATTCACCCGAGGCCAAAATCTTTTTCGGGTCAATCAAAGCATGTGGTGAGGGTATATCACTGGTTGGGGCATCTCGTGTCATCATCTTAGATGTGCACCTCAACCCGTCTGTTACTCGTCAAGCTATTGGCCGTGCTTTCCGACCAGGCCAGAAAAGGAAAGTGTTTGTGTATCGATTGATAGCTGCTGATTCTCCAGAAGAGGAAGATCACAGTACTTGTGTCAAGAAGGAATTAATTTCGAAAATGTGGTTTGAATGGAATGAATATTGTGGTGACAAAGCTTTCGAAGTTGAGAGAGTTGATGTGAAGGAATGTGGTGATATGTTTCTAGAAAGTCCATTATTAGGGGAAGATGTAAAAGCCCTGTATAAAAGGTAA

Protein sequence

>Msa0281690

MHHDTHGKKESQRIITLPAKLSSYGSIWLFISNKETQKPHSHSSSFQSSKPYSLTLLLLPKRFQISSMASSSKRPASTGISPEEGHKKLKLSSDRLPCLTHGDVVDYSSPYAISNVINRLESGKFGSVTKNIKDLITQKMQILGPYFAKCPRLANQLLRVVTDHDEETPNMENKNVTGLQHHNVIDLDSDGEHTEKDVLAPEKGYNVTAVPFIIDSDEEDDKDHGHDTVPTDHDEETPYIESEKAPGISHQNVTIDSSEEDDRDQKEDVLAPRREKDVPPAPFHEVIIIDLDEEDDKDHDEETPNMENEKVTPMSYQNVIIDSVEEDDRDHDEGTPNMENEKVTGMSYQNVIIDSNGEDDKDETSVLPFHEVALPKPVQSPALEMIGYHDPNAYHGGEHADLKFETSLLPKDNTKKDKGNYVGVHEEEDNKEFETSLSPEDNTKKDKGLYVGVREEEDNKVDTEDDGLEDVWREMAMAMETSKDVSANHPPEEEENDADCDHSFILKDDLGYVCRVCGVIDRGIETIFEFQYKVKKSTRTYMSESWNAQEKADIFGVKIAKDDLSVTEISAHPRHANQMKPHQVEGFNFLVRNLVGDHPGGCILAHAPGSGKTFMVICFIQSFLEKYPDARPLVVLPKGILSTWKKEFLTWQVEDVPLYDFYSVKADSRSQQLEVLKQWVDNKSILFLGYQQFSSIICDNCNNNTSISCQDILLKKPSILILDEGHTPRNENTDTVQSLAKVQTPRKVVLSGTLYQNHVKEVFNVLNLVRPKFIKMETSKPIVQRIRSRIHLPGVKDFCDLVENTLQKDPDFKRKVAVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLNMTPRQKHEVKTIKRVFRKFKMSSVGSAVYLHPDLKPIAEKCSENSISEHTMDDLIANQDVRDGVKLKFFRNMLNLCQSAGEKLLVFSQYLLPLKYLERLAMKWKGWSLGKEIFVISGESSTEQRECSMEKFNNSPEAKIFFGSIKACGEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQKRKVFVYRLIAADSPEEEDHSTCVKKELISKMWFEWNEYCGDKAFEVERVDVKECGDMFLESPLLGEDVKALYKR*