AlfalfaGEDB | Msa0282110

M. sativa cultivar zhongmu-4 / Msa0282110

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0282110	GAU41275.1	71.591	176	48	1	1	174	1	176	2.29e-83	257

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0282110	sp\|Q9FJK3\|AGL80_ARATH	54.321	162	71	2	1	161	1	160	1.16e-53	176

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0282110	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0243590	Msa0282110	0.855745	5.134075e-62	-8.615850e-47
Msa0282050	Msa0282110	0.916242	2.254543e-85	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0282110	MtrunA17_Chr8g0351751	69.730	185	47	3	1	177	1	184	1.01e-84	250
Msa0282110	MtrunA17_Chr2g0296831	94.262	122	7	0	1	122	1	122	4.03e-75	221
Msa0282110	MtrunA17_Chr4g0014031	66.111	180	56	2	1	176	1	179	5.95e-74	222
Msa0282110	MtrunA17_Chr4g0014321	64.815	162	57	0	1	162	1	162	2.44e-71	215
Msa0282110	MtrunA17_Chr3g0107381	62.821	156	57	1	1	156	1	155	6.78e-71	214
Msa0282110	MtrunA17_Chr3g0110131	65.000	160	55	1	1	160	1	159	1.62e-69	211
Msa0282110	MtrunA17_Chr4g0013041	65.584	154	51	1	1	154	1	152	1.03e-67	205
Msa0282110	MtrunA17_Chr4g0014131	63.333	180	61	2	1	176	1	179	9.18e-65	199
Msa0282110	MtrunA17_Chr4g0014121	69.677	155	47	0	1	155	29	183	1.49e-63	194
Msa0282110	MtrunA17_Chr3g0107331	50.943	159	77	1	3	161	2	159	1.12e-55	173

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0282110	AT5G48670.1	54.321	162	71	2	1	161	1	160	1.18e-54	176
Msa0282110	AT5G26630.1	47.305	167	87	1	1	167	1	166	7.27e-45	148
Msa0282110	AT1G65330.1	40.000	180	107	1	3	182	2	180	1.25e-39	136
Msa0282110	AT1G65300.1	41.818	165	95	1	3	167	2	165	1.68e-39	136
Msa0282110	AT5G26650.1	43.038	158	89	1	4	161	2	158	2.54e-39	137
Msa0282110	AT5G27960.1	43.038	158	89	1	4	161	2	158	4.16e-39	136
Msa0282110	AT1G31630.1	34.302	172	111	2	3	174	2	171	2.14e-33	121
Msa0282110	AT3G05860.2	39.024	164	95	2	1	162	1	161	9.22e-33	116
Msa0282110	AT3G05860.3	39.024	164	95	2	1	162	1	161	6.48e-32	115
Msa0282110	AT3G05860.1	39.024	164	95	2	1	162	1	161	7.25e-32	115

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Find 38 sgRNAs with CRISPR-Local

Find 40 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAAGGAAGGGAAACA+GGG	0.623030	2_3:+17876528	Msa0282110:CDS
AAGAGACATTCATGATGCAA+AGG	0.578602	2_3:+17876479	Msa0282110:CDS
AATCTATAAATTGTTGGTGG+TGG	0.528345	2_3:-17876761	None:intergenic
AGAGACATTCATGATGCAAA+GGG	0.543276	2_3:+17876480	Msa0282110:CDS
AGCACCGTATGAACTCCCCA+TGG	0.692559	2_3:-17876403	None:intergenic
AGCAGCGTCATTGACAATGA+AGG	0.575999	2_3:-17876248	None:intergenic
ATACGGTGCTCTCAAAATTC+AGG	0.449943	2_3:+17876416	Msa0282110:CDS
ATATGAGGTTGAGGTTCATG+AGG	0.635051	2_3:-17876370	None:intergenic
ATATTTAATCTATAAATTGT+TGG	0.434030	2_3:-17876767	None:intergenic
ATCACCATGGGGAGTTCATA+CGG	0.531278	2_3:+17876399	Msa0282110:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTTGTTCTTCTCTAATTC+AGG	-	chr2_3:17876448-17876467	None:intergenic	30.0%
AGGAGAAAGTGAAAAAACTA+AGG	+	chr2_3:17876515-17876534	Msa0282110:CDS	30.0%
GAAAGTGAAAAAACTAAGGA+AGG	+	chr2_3:17876519-17876538	Msa0282110:CDS	30.0%
GAAGGATATTGATAGAAGAT+TGG	+	chr2_3:17876663-17876682	Msa0282110:CDS	30.0%
TTGGAAGAAGTGGATAATAA+TGG	+	chr2_3:17876682-17876701	Msa0282110:CDS	30.0%
GGAAAGCAACCTATAAGAAA+AGG	+	chr2_3:17876272-17876291	Msa0282110:CDS	35.0%
ATGAACCTCAACCTCATATT+TGG	+	chr2_3:17876374-17876393	Msa0282110:CDS	35.0%
TTTGCATCATGAATGTCTCT+TGG	-	chr2_3:17876480-17876499	None:intergenic	35.0%
AAGAGACATTCATGATGCAA+AGG	+	chr2_3:17876479-17876498	Msa0282110:CDS	35.0%
AGAGACATTCATGATGCAAA+GGG	+	chr2_3:17876480-17876499	Msa0282110:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	17876223	17876780	17876223	ID=Msa0282110;Name=Msa0282110
chr2_3	mRNA	17876223	17876780	17876223	ID=Msa0282110-mRNA-1;Parent=Msa0282110;Name=Msa0282110-mRNA-1;_AED=0.27;_eAED=0.30;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|185
chr2_3	exon	17876223	17876780	17876223	ID=Msa0282110-mRNA-1:exon:7328;Parent=Msa0282110-mRNA-1
chr2_3	CDS	17876223	17876780	17876223	ID=Msa0282110-mRNA-1:cds;Parent=Msa0282110-mRNA-1

Gene Sequence

>Msa0282110

ATGACTAGGAAAAAGGTGAAACTCGCCTTCATTGTCAATGACGCTGCTCGGAAAGCAACCTATAAGAAAAGGATGAATAATTTATTGAAGAAGGTCGATGAACTAAGCACGCTTTGTGGTATTGAAGCATGTGCTATAGTTCAGGGTCCTCATGAACCTCAACCTCATATTTGGCCATCACCATGGGGAGTTCATACGGTGCTCTCAAAATTCAGGACTATGCCTGAATTAGAGAAGAACAAGAAAATGATGAACCAAGAGACATTCATGATGCAAAGGGTTTTGAAGGCTAAGGAGAAAGTGAAAAAACTAAGGAAGGGAAACAGGGAGCAAGAGATGACAATGATCATGTTTCAATGTCTTAATGCTGAAAAAATTGTGCACGATGATATGTCAATGATTGATTTGAATGACCTTGCTTGGTTGATTAACCAAAATTTGAAGGATATTGATAGAAGATTGGAAGAAGTGGATAATAATGGTCATCCAAGTCAAGTCATGACTACTCAATTGGAGTTAAGTTCAACTCCAAATGACACCACCACCAACAATTTATAG

Protein sequence

>Msa0282110

MTRKKVKLAFIVNDAARKATYKKRMNNLLKKVDELSTLCGIEACAIVQGPHEPQPHIWPSPWGVHTVLSKFRTMPELEKNKKMMNQETFMMQRVLKAKEKVKKLRKGNREQEMTMIMFQCLNAEKIVHDDMSMIDLNDLAWLINQNLKDIDRRLEEVDNNGHPSQVMTTQLELSSTPNDTTTNNL*