Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0283380 | Msa1243300 | 0.872537 | 2.947346e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 10 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGTTACTTCTTCTCCTTCA+TGG | 0.308459 | 2_3:-20534398 | None:intergenic |
| TGCTGCTGCAACTTCTGTTT+CGG | 0.361471 | 2_3:+20531681 | None:intergenic |
| ATTGCCTTTAGGGTCCATAT+TGG | 0.409955 | 2_3:+20531604 | None:intergenic |
| TGCAGCGCTGGTTGCAATGA+AGG | 0.439173 | 2_3:+20534356 | None:intergenic |
| AGAAGGAGTCTACTATTTCA+AGG | 0.491554 | 2_3:-20534300 | Msa0283380:intron |
| AAGAAGAAGAACTGCCATGA+AGG | 0.518565 | 2_3:+20534384 | None:intergenic |
| CAGTGGTCTGAAAATTGAAA+AGG | 0.521123 | 2_3:-20534335 | Msa0283380:CDS |
| CATTGCAACCAGCGCTGCAG+TGG | 0.543575 | 2_3:-20534352 | Msa0283380:CDS |
| AAAGGACAGCAAGAAGAAGA+AGG | 0.546280 | 2_3:-20534317 | Msa0283380:CDS |
| AACGCCAATATGGACCCTAA+AGG | 0.590616 | 2_3:-20531608 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTGTTATTTATTTTTC+TGG | - | chr2_3:20533099-20533118 | Msa0283380:intron | 10.0% |
| !!! | TTTTTTTTAATAGTATTTGA+TGG | - | chr2_3:20533505-20533524 | Msa0283380:intron | 10.0% |
| !!! | TTTTTTTAATAGTATTTGAT+GGG | - | chr2_3:20533506-20533525 | Msa0283380:intron | 10.0% |
| !! | ATAAATAAATTAAATTACTC+TGG | - | chr2_3:20533998-20534017 | Msa0283380:intron | 10.0% |
| !! | ATAGAGAAAAGAAAAAAAAA+AGG | + | chr2_3:20531976-20531995 | None:intergenic | 15.0% |
| !!! | TCTTATTGTTAATTTTCTTT+TGG | - | chr2_3:20532175-20532194 | Msa0283380:intron | 15.0% |
| !!! | TAAGAATAATGGTTTTATAT+GGG | + | chr2_3:20532282-20532301 | None:intergenic | 15.0% |
| !!! | ATAAGAATAATGGTTTTATA+TGG | + | chr2_3:20532283-20532302 | None:intergenic | 15.0% |
| !!! | GTTAATTTAAACTTTAAAGT+TGG | - | chr2_3:20533616-20533635 | Msa0283380:intron | 15.0% |
| !! | AAATTGATGAATGAATAATA+CGG | + | chr2_3:20533893-20533912 | None:intergenic | 15.0% |
| !! | GTATCTGATAATAAGAATAA+TGG | + | chr2_3:20532293-20532312 | None:intergenic | 20.0% |
| !!! | TATTTGTTCTTTTTTGTGTT+TGG | - | chr2_3:20533285-20533304 | Msa0283380:intron | 20.0% |
| !!! | TGCATAAATATACTACATTT+TGG | - | chr2_3:20533334-20533353 | Msa0283380:intron | 20.0% |
| !! | AATCAAATATGTTAGCTATT+TGG | + | chr2_3:20533362-20533381 | None:intergenic | 20.0% |
| !! | AAATAGCTAACATATTTGAT+TGG | - | chr2_3:20533361-20533380 | Msa0283380:intron | 20.0% |
| !! | AATAGCTAACATATTTGATT+GGG | - | chr2_3:20533362-20533381 | Msa0283380:intron | 20.0% |
| !! | AATATATCTATCTGTTTGTT+GGG | - | chr2_3:20533557-20533576 | Msa0283380:intron | 20.0% |
| !!! | TAATAACCAGATGATTTTAT+AGG | - | chr2_3:20533705-20533724 | Msa0283380:intron | 20.0% |
| !! | TTATTCATTCATCAATTTCT+TGG | - | chr2_3:20533895-20533914 | Msa0283380:intron | 20.0% |
| !!! | AGTAGTTTAACATTTTCTTA+AGG | - | chr2_3:20534089-20534108 | Msa0283380:intron | 20.0% |
| ! | CATTATCGTGAAAATTGAAA+AGG | + | chr2_3:20531754-20531773 | None:intergenic | 25.0% |
| ! | TGATGAGATATTTGCAAAAT+TGG | - | chr2_3:20532112-20532131 | Msa0283380:intron | 25.0% |
| ! | AGATACTCTTTCTTTATTGT+TGG | - | chr2_3:20532307-20532326 | Msa0283380:intron | 25.0% |
| !!! | AATGAGATGATTTTCAAGAA+TGG | - | chr2_3:20532414-20532433 | Msa0283380:intron | 25.0% |
| ! | CACTCATAAAATAGAAATGA+CGG | + | chr2_3:20532516-20532535 | None:intergenic | 25.0% |
| ! | GTTGGGCTTATAATATATTT+CGG | - | chr2_3:20532836-20532855 | Msa0283380:intron | 25.0% |
| ! | AAAATTGAAGTCTATGTTTG+AGG | - | chr2_3:20533006-20533025 | Msa0283380:intron | 25.0% |
| ! | AAATTGAAGTCTATGTTTGA+GGG | - | chr2_3:20533007-20533026 | Msa0283380:intron | 25.0% |
| !!! | TGTTAGACAAACTTTTTCTA+AGG | - | chr2_3:20533152-20533171 | Msa0283380:intron | 25.0% |
| !!! | AATATGTTTTAGACGTTCAT+AGG | + | chr2_3:20533269-20533288 | None:intergenic | 25.0% |
| ! | TTAAAAAAAAAACAGCCACA+TGG | + | chr2_3:20533495-20533514 | None:intergenic | 25.0% |
| ! | GAATATATCTATCTGTTTGT+TGG | - | chr2_3:20533556-20533575 | Msa0283380:intron | 25.0% |
| ! | AGTTATGAAGAATGTGTATA+CGG | + | chr2_3:20533840-20533859 | None:intergenic | 25.0% |
| ! | TACACATTCTTCATAACTTA+AGG | - | chr2_3:20533842-20533861 | Msa0283380:intron | 25.0% |
| AGTCTACTATTTCAAGGTAT+GGG | - | chr2_3:20531709-20531728 | Msa0283380:CDS | 30.0% | |
| AAATTGGTTGTAATCAGTGA+AGG | - | chr2_3:20532128-20532147 | Msa0283380:intron | 30.0% | |
| AATTGGTTGTAATCAGTGAA+GGG | - | chr2_3:20532129-20532148 | Msa0283380:intron | 30.0% | |
| !! | TTGGATGTTCTGTTTCTATT+TGG | - | chr2_3:20532194-20532213 | Msa0283380:intron | 30.0% |
| ! | TCTTTATTGTTGGTCTAATG+AGG | - | chr2_3:20532317-20532336 | Msa0283380:intron | 30.0% |
| ! | AAACCTTGTCTAAGCTTTTT+CGG | + | chr2_3:20532348-20532367 | None:intergenic | 30.0% |
| ! | AAAAAGCTTAGACAAGGTTT+TGG | - | chr2_3:20532348-20532367 | Msa0283380:intron | 30.0% |
| !!! | GACAAGGTTTTGGTTTAATT+TGG | - | chr2_3:20532358-20532377 | Msa0283380:intron | 30.0% |
| TAATTTGGCATGCTGTAATT+TGG | - | chr2_3:20532373-20532392 | Msa0283380:intron | 30.0% | |
| AATTTGGCATGCTGTAATTT+GGG | - | chr2_3:20532374-20532393 | Msa0283380:intron | 30.0% | |
| AGAAAATTAAGGTTCAGTCT+TGG | - | chr2_3:20532463-20532482 | Msa0283380:intron | 30.0% | |
| GAAAATTAAGGTTCAGTCTT+GGG | - | chr2_3:20532464-20532483 | Msa0283380:intron | 30.0% | |
| ! | AAATGACGGAATTTACAACT+GGG | + | chr2_3:20532502-20532521 | None:intergenic | 30.0% |
| ! | CGTCATTTCTATTTTATGAG+TGG | - | chr2_3:20532514-20532533 | Msa0283380:intron | 30.0% |
| ! | TTCTATTTTATGAGTGGTGT+TGG | - | chr2_3:20532520-20532539 | Msa0283380:intron | 30.0% |
| !! | TCTAAGTTCTGATGTTGTTT+TGG | + | chr2_3:20532964-20532983 | None:intergenic | 30.0% |
| ! | TTTAGAATGTGCTAGCATTT+AGG | - | chr2_3:20533073-20533092 | Msa0283380:intron | 30.0% |
| GAGGTTTGTGAAAAACAAAT+TGG | - | chr2_3:20533195-20533214 | Msa0283380:intron | 30.0% | |
| CTAACATATTTGATTGGGAT+TGG | - | chr2_3:20533367-20533386 | Msa0283380:intron | 30.0% | |
| AGCATGTGTATCTTTACTTA+GGG | + | chr2_3:20533431-20533450 | None:intergenic | 30.0% | |
| AAGCATGTGTATCTTTACTT+AGG | + | chr2_3:20533432-20533451 | None:intergenic | 30.0% | |
| ! | ACACATGCTTTTACATTTGT+AGG | - | chr2_3:20533442-20533461 | Msa0283380:intron | 30.0% |
| TCTCTTCATTATGTATCTCT+TGG | - | chr2_3:20533594-20533613 | Msa0283380:intron | 30.0% | |
| TTGGAACCTATAAAATCATC+TGG | + | chr2_3:20533714-20533733 | None:intergenic | 30.0% | |
| ! | TAAAGGATGAGTCAAGATTT+TGG | - | chr2_3:20533764-20533783 | Msa0283380:intron | 30.0% |
| !!! | GATTTTGGTTAAGAATTCCA+AGG | - | chr2_3:20533779-20533798 | Msa0283380:intron | 30.0% |
| !! | TTAACAACCTTAAAAGCACT+TGG | + | chr2_3:20534130-20534149 | None:intergenic | 30.0% |
| !!! | TTTTTTTGGTGGTTTAGGTA+TGG | + | chr2_3:20534377-20534396 | None:intergenic | 30.0% |
| CAGTGGTCTGAAAATTGAAA+AGG | - | chr2_3:20531668-20531687 | Msa0283380:CDS | 35.0% | |
| AGAAGGAGTCTACTATTTCA+AGG | - | chr2_3:20531703-20531722 | Msa0283380:CDS | 35.0% | |
| GAGTCTACTATTTCAAGGTA+TGG | - | chr2_3:20531708-20531727 | Msa0283380:CDS | 35.0% | |
| ATTGGTTGTAATCAGTGAAG+GGG | - | chr2_3:20532130-20532149 | Msa0283380:intron | 35.0% | |
| TGGGATGAACGAAATTCTAA+CGG | + | chr2_3:20532263-20532282 | None:intergenic | 35.0% | |
| ATGCTGTAATTTGGGTGATT+TGG | - | chr2_3:20532382-20532401 | Msa0283380:intron | 35.0% | |
| ! | TGTAATTTGGGTGATTTGGA+AGG | - | chr2_3:20532386-20532405 | Msa0283380:intron | 35.0% |
| ! | GGATATGGTGGAGAAAATTA+AGG | - | chr2_3:20532452-20532471 | Msa0283380:intron | 35.0% |
| ! | GAAATGACGGAATTTACAAC+TGG | + | chr2_3:20532503-20532522 | None:intergenic | 35.0% |
| TCGTCTTAGTTGTTATGTGT+TGG | - | chr2_3:20532577-20532596 | Msa0283380:intron | 35.0% | |
| CGTCTTAGTTGTTATGTGTT+GGG | - | chr2_3:20532578-20532597 | Msa0283380:intron | 35.0% | |
| !! | CTGTTAGTTTGTTTCTGAGA+CGG | - | chr2_3:20532628-20532647 | Msa0283380:intron | 35.0% |
| !! | TGTTAGTTTGTTTCTGAGAC+GGG | - | chr2_3:20532629-20532648 | Msa0283380:intron | 35.0% |
| !!! | TTATAGGCAGCTGTTTTTAG+TGG | - | chr2_3:20532690-20532709 | Msa0283380:intron | 35.0% |
| ! | CTAATTGCTTTCTGGTGTAT+TGG | - | chr2_3:20532766-20532785 | Msa0283380:intron | 35.0% |
| !! | GCTTTGTTTGGTACTTGAAT+TGG | + | chr2_3:20532897-20532916 | None:intergenic | 35.0% |
| TTGTGCAAAGAATGTGGTAA+GGG | + | chr2_3:20532936-20532955 | None:intergenic | 35.0% | |
| ATTGTGCAAAGAATGTGGTA+AGG | + | chr2_3:20532937-20532956 | None:intergenic | 35.0% | |
| GACAAATTGTGCAAAGAATG+TGG | + | chr2_3:20532942-20532961 | None:intergenic | 35.0% | |
| ATTGAGGACCAAATTTGAGA+AGG | - | chr2_3:20533030-20533049 | Msa0283380:intron | 35.0% | |
| CTACGTTTCCTTCTCAAATT+TGG | + | chr2_3:20533041-20533060 | None:intergenic | 35.0% | |
| !! | TTGTTTTTCACAAACCTCTC+TGG | + | chr2_3:20533193-20533212 | None:intergenic | 35.0% |
| GCATGTGTATCTTTACTTAG+GGG | + | chr2_3:20533430-20533449 | None:intergenic | 35.0% | |
| TAGTATTTGATGGGACTGTT+TGG | - | chr2_3:20533515-20533534 | Msa0283380:intron | 35.0% | |
| ! | ATCTGTTTGTTGGGTATGTT+TGG | - | chr2_3:20533566-20533585 | Msa0283380:intron | 35.0% |
| TTTGTTGGGTATGTTTGGTT+TGG | - | chr2_3:20533571-20533590 | Msa0283380:intron | 35.0% | |
| !! | CTTTCAAGTTCTCTGAGTTA+AGG | + | chr2_3:20533870-20533889 | None:intergenic | 35.0% |
| ! | TGAAATGCCAAGTGCTTTTA+AGG | - | chr2_3:20534120-20534139 | Msa0283380:intron | 35.0% |
| !! | TTGAAGTGTGTACTGATTCT+AGG | - | chr2_3:20534184-20534203 | Msa0283380:intron | 35.0% |
| AAGAAGAAGAACTGCCATGA+AGG | + | chr2_3:20531622-20531641 | None:intergenic | 40.0% | |
| AAAGGACAGCAAGAAGAAGA+AGG | - | chr2_3:20531686-20531705 | Msa0283380:CDS | 40.0% | |
| GAAACACATAGATCAAGACG+AGG | + | chr2_3:20531873-20531892 | None:intergenic | 40.0% | |
| !! | GTGTTCTTGTGTTGCTTTCT+TGG | - | chr2_3:20531915-20531934 | Msa0283380:intron | 40.0% |
| !! | TTCTTGTGTTGCTTTCTTGG+AGG | - | chr2_3:20531918-20531937 | Msa0283380:intron | 40.0% |
| GATGAACGAAATTCTAACGG+TGG | + | chr2_3:20532260-20532279 | None:intergenic | 40.0% | |
| AGACCGAAAAAGCTTAGACA+AGG | - | chr2_3:20532342-20532361 | Msa0283380:intron | 40.0% | |
| TGTAGCTGATGTAGAGGATA+TGG | - | chr2_3:20532437-20532456 | Msa0283380:intron | 40.0% | |
| TTAAGGTTCAGTCTTGGGTT+TGG | - | chr2_3:20532469-20532488 | Msa0283380:intron | 40.0% | |
| !! | GTTAGTTTGTTTCTGAGACG+GGG | - | chr2_3:20532630-20532649 | Msa0283380:intron | 40.0% |
| !! | TTAGTTTGTTTCTGAGACGG+GGG | - | chr2_3:20532631-20532650 | Msa0283380:intron | 40.0% |
| GCCTATAAACACAACCAACA+GGG | + | chr2_3:20532678-20532697 | None:intergenic | 40.0% | |
| TGCCTATAAACACAACCAAC+AGG | + | chr2_3:20532679-20532698 | None:intergenic | 40.0% | |
| CAAATCCACAACACCACAAA+CGG | + | chr2_3:20532745-20532764 | None:intergenic | 40.0% | |
| GGATTTGGCTAATTGCTTTC+TGG | - | chr2_3:20532758-20532777 | Msa0283380:intron | 40.0% | |
| TGCCTATCTTAAGTGGTGTT+GGG | - | chr2_3:20532819-20532838 | Msa0283380:intron | 40.0% | |
| !! | CAATCTCGGAAAGCTTTGTT+TGG | + | chr2_3:20532909-20532928 | None:intergenic | 40.0% |
| ! | GTGGTAAGGGTTTTCAATCT+CGG | + | chr2_3:20532923-20532942 | None:intergenic | 40.0% |
| AGTCTATGTTTGAGGGATTG+AGG | - | chr2_3:20533014-20533033 | Msa0283380:intron | 40.0% | |
| !!! | TTTTCTGGTTCGCTTTACTG+AGG | - | chr2_3:20533114-20533133 | Msa0283380:intron | 40.0% |
| !! | TTTCTGGTTCGCTTTACTGA+GGG | - | chr2_3:20533115-20533134 | Msa0283380:intron | 40.0% |
| ! | ACTTTCAAAGTGTTCCAGAG+AGG | - | chr2_3:20533176-20533195 | Msa0283380:intron | 40.0% |
| TGAGCATGAGATAGAAGACT+TGG | + | chr2_3:20533245-20533264 | None:intergenic | 40.0% | |
| GCTTACTTATTCTCTCCATG+TGG | - | chr2_3:20533477-20533496 | Msa0283380:intron | 40.0% | |
| TAGTTGTCATGTTTGCTCCT+TGG | + | chr2_3:20533799-20533818 | None:intergenic | 40.0% | |
| AATGTGTATACGGTTCACTG+AGG | + | chr2_3:20533830-20533849 | None:intergenic | 40.0% | |
| !!! | TGGCGTTTTTTTGGTGGTTT+AGG | + | chr2_3:20534382-20534401 | None:intergenic | 40.0% |
| !!! | CCATATTGGCGTTTTTTTGG+TGG | + | chr2_3:20534388-20534407 | None:intergenic | 40.0% |
| CCACCAAAAAAACGCCAATA+TGG | - | chr2_3:20534385-20534404 | Msa0283380:exon | 40.0% | |
| !!! | GGTCCATATTGGCGTTTTTT+TGG | + | chr2_3:20534391-20534410 | None:intergenic | 40.0% |
| GAACGAAATTCTAACGGTGG+CGG | + | chr2_3:20532257-20532276 | None:intergenic | 45.0% | |
| GAATGGTGTAGCTGATGTAG+AGG | - | chr2_3:20532431-20532450 | Msa0283380:intron | 45.0% | |
| AGCTGATGTAGAGGATATGG+TGG | - | chr2_3:20532440-20532459 | Msa0283380:intron | 45.0% | |
| ACCGAATTAGACAATCCCCA+CGG | + | chr2_3:20532549-20532568 | None:intergenic | 45.0% | |
| AAACACAACCAACAGGGCAA+GGG | + | chr2_3:20532672-20532691 | None:intergenic | 45.0% | |
| TAAACACAACCAACAGGGCA+AGG | + | chr2_3:20532673-20532692 | None:intergenic | 45.0% | |
| ! | GCCCTGTTGGTTGTGTTTAT+AGG | - | chr2_3:20532674-20532693 | Msa0283380:intron | 45.0% |
| !!! | TAGGCAGCTGTTTTTAGTGG+TGG | - | chr2_3:20532693-20532712 | Msa0283380:intron | 45.0% |
| ACCACAAACGGTATGGAACA+GGG | + | chr2_3:20532733-20532752 | None:intergenic | 45.0% | |
| !! | CGTTTGTGGTGTTGTGGATT+TGG | - | chr2_3:20532743-20532762 | Msa0283380:intron | 45.0% |
| CCACTTAAGATAGGCAGCTA+GGG | + | chr2_3:20532815-20532834 | None:intergenic | 45.0% | |
| ACCACTTAAGATAGGCAGCT+AGG | + | chr2_3:20532816-20532835 | None:intergenic | 45.0% | |
| CTGCCTATCTTAAGTGGTGT+TGG | - | chr2_3:20532818-20532837 | Msa0283380:intron | 45.0% | |
| AGCCCAACACCACTTAAGAT+AGG | + | chr2_3:20532824-20532843 | None:intergenic | 45.0% | |
| !! | TTCTGGTTCGCTTTACTGAG+GGG | - | chr2_3:20533116-20533135 | Msa0283380:intron | 45.0% |
| ! | AGGCGCTACATGAAAGGTTT+TGG | + | chr2_3:20533733-20533752 | None:intergenic | 45.0% |
| CTTTCATGTAGCGCCTTCAA+GGG | - | chr2_3:20533737-20533756 | Msa0283380:intron | 45.0% | |
| TTTCATGTAGCGCCTTCAAG+GGG | - | chr2_3:20533738-20533757 | Msa0283380:intron | 45.0% | |
| CATCCTTTAACACCCCTTGA+AGG | + | chr2_3:20533753-20533772 | None:intergenic | 45.0% | |
| TGCTGCTGCAACTTCTGTTT+CGG | + | chr2_3:20534325-20534344 | None:intergenic | 45.0% | |
| !!! | ATTTTTTTTTTATTTCAATA+TGG | + | chr2_3:20532085-20532104 | None:intergenic | 5.0% |
| CCGAATTAGACAATCCCCAC+GGG | + | chr2_3:20532548-20532567 | None:intergenic | 50.0% | |
| CCCGTGGGGATTGTCTAATT+CGG | - | chr2_3:20532545-20532564 | Msa0283380:intron | 50.0% | |
| GCGTGCAAGTAGTCTGATGT+GGG | - | chr2_3:20532600-20532619 | Msa0283380:intron | 50.0% | |
| CGTGCAAGTAGTCTGATGTG+GGG | - | chr2_3:20532601-20532620 | Msa0283380:intron | 50.0% | |
| ! | TTCTTTTCCCCTTGCCCTGT+TGG | - | chr2_3:20532661-20532680 | Msa0283380:intron | 50.0% |
| AACACAACCAACAGGGCAAG+GGG | + | chr2_3:20532671-20532690 | None:intergenic | 50.0% | |
| TCCCTGTTCCATACCGTTTG+TGG | - | chr2_3:20532729-20532748 | Msa0283380:intron | 50.0% | |
| CACCACAAACGGTATGGAAC+AGG | + | chr2_3:20532734-20532753 | None:intergenic | 50.0% | |
| CCACAACACCACAAACGGTA+TGG | + | chr2_3:20532740-20532759 | None:intergenic | 50.0% | |
| ! | CCATACCGTTTGTGGTGTTG+TGG | - | chr2_3:20532737-20532756 | Msa0283380:intron | 50.0% |
| CCCTAGCTGCCTATCTTAAG+TGG | - | chr2_3:20532812-20532831 | Msa0283380:intron | 50.0% | |
| !! | CCTTGAAGGCGCTACATGAA+AGG | + | chr2_3:20533739-20533758 | None:intergenic | 50.0% |
| CCTTTCATGTAGCGCCTTCA+AGG | - | chr2_3:20533736-20533755 | Msa0283380:intron | 50.0% | |
| ! | ATACGGTTCACTGAGGCATC+TGG | + | chr2_3:20533823-20533842 | None:intergenic | 50.0% |
| !! | TGCAGCGCTGGTTGCAATGA+AGG | + | chr2_3:20531650-20531669 | None:intergenic | 55.0% |
| ! | TTTTCAGACCACTGCAGCGC+TGG | + | chr2_3:20531662-20531681 | None:intergenic | 55.0% |
| ! | ATGAGTGGTGTTGGAACCCG+TGG | - | chr2_3:20532529-20532548 | Msa0283380:intron | 55.0% |
| ! | TGAGTGGTGTTGGAACCCGT+GGG | - | chr2_3:20532530-20532549 | Msa0283380:intron | 55.0% |
| GGCGTGCAAGTAGTCTGATG+TGG | - | chr2_3:20532599-20532618 | Msa0283380:intron | 55.0% | |
| !! | GCGCCTTCAAGGGGTGTTAA+AGG | - | chr2_3:20533747-20533766 | Msa0283380:intron | 55.0% |
| CATTGCAACCAGCGCTGCAG+TGG | - | chr2_3:20531651-20531670 | Msa0283380:CDS | 60.0% | |
| ! | GAGTGGTGTTGGAACCCGTG+GGG | - | chr2_3:20532531-20532550 | Msa0283380:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 20531611 | 20534414 | 20531611 | ID=Msa0283380;Name=Msa0283380 |
| chr2_3 | mRNA | 20531611 | 20534414 | 20531611 | ID=Msa0283380-mRNA-1;Parent=Msa0283380;Name=Msa0283380-mRNA-1;_AED=0.65;_eAED=0.65;_QI=13|0|0.5|0.5|1|1|2|0|72 |
| chr2_3 | exon | 20531611 | 20531728 | 20531611 | ID=Msa0283380-mRNA-1:exon:8133;Parent=Msa0283380-mRNA-1 |
| chr2_3 | exon | 20534301 | 20534414 | 20534301 | ID=Msa0283380-mRNA-1:exon:8132;Parent=Msa0283380-mRNA-1 |
| chr2_3 | five_prime_UTR | 20534402 | 20534414 | 20534402 | ID=Msa0283380-mRNA-1:five_prime_utr;Parent=Msa0283380-mRNA-1 |
| chr2_3 | CDS | 20534301 | 20534401 | 20534301 | ID=Msa0283380-mRNA-1:cds;Parent=Msa0283380-mRNA-1 |
| chr2_3 | CDS | 20531611 | 20531728 | 20531611 | ID=Msa0283380-mRNA-1:cds;Parent=Msa0283380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
