Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0283380 | Msa1243300 | 0.872537 | 2.947346e-67 | -8.615850e-47 |
| Msa0600680 | Msa1243300 | 0.872560 | 2.894563e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 7 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGTTACTTCTTCTCTTTCA+TGG | 0.301626 | 8_2:-28836572 | Msa1243300:CDS |
| TGCTGCTGCAACTTCTGTTT+CGG | 0.361471 | 8_2:+28833855 | None:intergenic |
| TGCAGCGCTGGTTGCAATGA+AGG | 0.439173 | 8_2:+28836530 | None:intergenic |
| AGAAGGAGTCTACTATTTCA+AGG | 0.491554 | 8_2:-28836474 | Msa1243300:intron |
| CAGTGGTCTGAAAATTGAAA+AGG | 0.521123 | 8_2:-28836509 | Msa1243300:CDS |
| CATTGCAACCAGCGCTGCAG+TGG | 0.543575 | 8_2:-28836526 | Msa1243300:CDS |
| AAAGGACAGCAAGAAGAAGA+AGG | 0.546280 | 8_2:-28836491 | Msa1243300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTGTTATTTATTTTTC+TGG | - | chr8_2:28835436-28835455 | Msa1243300:intron | 10.0% |
| !!! | TTTTTTTTAATAGTATTTGA+TGG | - | chr8_2:28835842-28835861 | Msa1243300:intron | 10.0% |
| !!! | TTTTTTTAATAGTATTTGAT+GGG | - | chr8_2:28835843-28835862 | Msa1243300:intron | 10.0% |
| !! | ATAAATAAATTAAATTACTC+TGG | - | chr8_2:28836334-28836353 | Msa1243300:intron | 10.0% |
| !! | ATAGAGAAAAGAAAAAAAAA+AGG | + | chr8_2:28834312-28834331 | None:intergenic | 15.0% |
| !!! | TCTTATTGTTAATTTTCTTT+TGG | - | chr8_2:28834510-28834529 | Msa1243300:intron | 15.0% |
| !!! | TAAGAATAATGGTTTTATAT+GGG | + | chr8_2:28834617-28834636 | None:intergenic | 15.0% |
| !!! | ATAAGAATAATGGTTTTATA+TGG | + | chr8_2:28834618-28834637 | None:intergenic | 15.0% |
| !! | AAATTGATGAATGAATAATA+CGG | + | chr8_2:28836229-28836248 | None:intergenic | 15.0% |
| !! | GTATCTGATAATAAGAATAA+TGG | + | chr8_2:28834628-28834647 | None:intergenic | 20.0% |
| !!! | TATTTGTTCTTTTTTGTGTT+TGG | - | chr8_2:28835622-28835641 | Msa1243300:intron | 20.0% |
| !!! | TGCATAAATATACTACATTT+TGG | - | chr8_2:28835671-28835690 | Msa1243300:intron | 20.0% |
| !! | AATCAAATATGTTAGCTATT+TGG | + | chr8_2:28835699-28835718 | None:intergenic | 20.0% |
| !! | AAATAGCTAACATATTTGAT+TGG | - | chr8_2:28835698-28835717 | Msa1243300:intron | 20.0% |
| !! | AATAGCTAACATATTTGATT+GGG | - | chr8_2:28835699-28835718 | Msa1243300:intron | 20.0% |
| !! | TTAAAAAAAAAACAGCCATA+TGG | + | chr8_2:28835832-28835851 | None:intergenic | 20.0% |
| !! | AATATATCTATCTGTTTGTT+GGG | - | chr8_2:28835894-28835913 | Msa1243300:intron | 20.0% |
| !!! | GGTTATTTAAACTTTAAAGT+TGG | - | chr8_2:28835952-28835971 | Msa1243300:intron | 20.0% |
| !!! | TAATAACCAGATGATTTTAT+AGG | - | chr8_2:28836041-28836060 | Msa1243300:intron | 20.0% |
| !! | TTATTCATTCATCAATTTCT+TGG | - | chr8_2:28836231-28836250 | Msa1243300:intron | 20.0% |
| !!! | AGTAGTTTAACATTTTCTTA+AGG | - | chr8_2:28836425-28836444 | Msa1243300:intron | 20.0% |
| ! | AAGTGCAAAATTCATAAGTT+TGG | + | chr8_2:28833860-28833879 | None:intergenic | 25.0% |
| !! | AACTTATGAATTTTGCACTT+TGG | - | chr8_2:28833860-28833879 | Msa1243300:CDS | 25.0% |
| !! | ACTTATGAATTTTGCACTTT+GGG | - | chr8_2:28833861-28833880 | Msa1243300:CDS | 25.0% |
| ! | CATTATCGTGAAAATTGAAA+AGG | + | chr8_2:28834090-28834109 | None:intergenic | 25.0% |
| ! | TGATGAGATATTTGCAAAAT+TGG | - | chr8_2:28834447-28834466 | Msa1243300:intron | 25.0% |
| ! | AGATACTCTTTCTTTATTGT+TGG | - | chr8_2:28834642-28834661 | Msa1243300:intron | 25.0% |
| !!! | AATGAGATGATTTTCAAGAA+TGG | - | chr8_2:28834749-28834768 | Msa1243300:intron | 25.0% |
| ! | CACTCATAAAATAGAAATGA+CGG | + | chr8_2:28834851-28834870 | None:intergenic | 25.0% |
| ! | GTTGGGCTTATAATATATTT+CGG | - | chr8_2:28835171-28835190 | Msa1243300:intron | 25.0% |
| ! | AAAATTGAAGTCTATGTTTG+AGG | - | chr8_2:28835343-28835362 | Msa1243300:intron | 25.0% |
| ! | AAATTGAAGTCTATGTTTGA+GGG | - | chr8_2:28835344-28835363 | Msa1243300:intron | 25.0% |
| !!! | TGTTAGACAAACTTTTTCTA+AGG | - | chr8_2:28835489-28835508 | Msa1243300:intron | 25.0% |
| !!! | AATATGTTTTAGACGTTCAT+AGG | + | chr8_2:28835606-28835625 | None:intergenic | 25.0% |
| ! | GAATATATCTATCTGTTTGT+TGG | - | chr8_2:28835893-28835912 | Msa1243300:intron | 25.0% |
| ! | AGTTATGAAGAATGTGTATA+CGG | + | chr8_2:28836176-28836195 | None:intergenic | 25.0% |
| ! | TACACATTCTTCATAACTTA+AGG | - | chr8_2:28836178-28836197 | Msa1243300:intron | 25.0% |
| TGCAAAATTCATAAGTTTGG+TGG | + | chr8_2:28833857-28833876 | None:intergenic | 30.0% | |
| ! | CTTATGAATTTTGCACTTTG+GGG | - | chr8_2:28833862-28833881 | Msa1243300:CDS | 30.0% |
| AGTCTACTATTTCAAGGTAT+GGG | - | chr8_2:28834045-28834064 | Msa1243300:intron | 30.0% | |
| AAATTGGTTGTAATCAGTGA+AGG | - | chr8_2:28834463-28834482 | Msa1243300:intron | 30.0% | |
| AATTGGTTGTAATCAGTGAA+GGG | - | chr8_2:28834464-28834483 | Msa1243300:intron | 30.0% | |
| !! | TTGGATGTTCTGTTTCTATT+TGG | - | chr8_2:28834529-28834548 | Msa1243300:intron | 30.0% |
| ! | TCTTTATTGTTGGTCTAATG+AGG | - | chr8_2:28834652-28834671 | Msa1243300:intron | 30.0% |
| ! | AAACCTTGTCTAAGCTTTTT+CGG | + | chr8_2:28834683-28834702 | None:intergenic | 30.0% |
| ! | AAAAAGCTTAGACAAGGTTT+TGG | - | chr8_2:28834683-28834702 | Msa1243300:intron | 30.0% |
| !!! | GACAAGGTTTTGGTTTAATT+TGG | - | chr8_2:28834693-28834712 | Msa1243300:intron | 30.0% |
| TAATTTGGCATGCTGTAATT+TGG | - | chr8_2:28834708-28834727 | Msa1243300:intron | 30.0% | |
| AATTTGGCATGCTGTAATTT+GGG | - | chr8_2:28834709-28834728 | Msa1243300:intron | 30.0% | |
| AGAAAATTAAGGTTCAGTCT+TGG | - | chr8_2:28834798-28834817 | Msa1243300:intron | 30.0% | |
| GAAAATTAAGGTTCAGTCTT+GGG | - | chr8_2:28834799-28834818 | Msa1243300:intron | 30.0% | |
| ! | AAATGACGGAATTTACAACT+GGG | + | chr8_2:28834837-28834856 | None:intergenic | 30.0% |
| ! | CGTCATTTCTATTTTATGAG+TGG | - | chr8_2:28834849-28834868 | Msa1243300:intron | 30.0% |
| ! | TTCTATTTTATGAGTGGTGT+TGG | - | chr8_2:28834855-28834874 | Msa1243300:intron | 30.0% |
| !! | TCTAAGTTCTGATGTTGTTT+TGG | + | chr8_2:28835301-28835320 | None:intergenic | 30.0% |
| ! | TTTAGAATGTGCTAGCATTT+AGG | - | chr8_2:28835410-28835429 | Msa1243300:intron | 30.0% |
| GAGGTTTGTGAAAAACAAAT+TGG | - | chr8_2:28835532-28835551 | Msa1243300:intron | 30.0% | |
| CTAACATATTTGATTGGGAT+TGG | - | chr8_2:28835704-28835723 | Msa1243300:intron | 30.0% | |
| AGCATGTGTATCTTTACTTA+GGG | + | chr8_2:28835768-28835787 | None:intergenic | 30.0% | |
| AAGCATGTGTATCTTTACTT+AGG | + | chr8_2:28835769-28835788 | None:intergenic | 30.0% | |
| ! | ACACATGCTTTTACATTTGT+AGG | - | chr8_2:28835779-28835798 | Msa1243300:intron | 30.0% |
| TCTCTTCATTATGTATCTCT+TGG | - | chr8_2:28835931-28835950 | Msa1243300:intron | 30.0% | |
| TTGGAACCTATAAAATCATC+TGG | + | chr8_2:28836050-28836069 | None:intergenic | 30.0% | |
| ! | TAAAGGATGAGTCAAGATTT+TGG | - | chr8_2:28836100-28836119 | Msa1243300:intron | 30.0% |
| !!! | GATTTTGGTTAAGAATTCCA+AGG | - | chr8_2:28836115-28836134 | Msa1243300:intron | 30.0% |
| !! | TTAACAACCTTAAAAGCACT+TGG | + | chr8_2:28836466-28836485 | None:intergenic | 30.0% |
| ATGGAACAAGTAAGTTTGAC+TGG | - | chr8_2:28833816-28833835 | Msa1243300:CDS | 35.0% | |
| TCGTTACTTCTTCTCTTTCA+TGG | - | chr8_2:28833941-28833960 | Msa1243300:intron | 35.0% | |
| CAGTGGTCTGAAAATTGAAA+AGG | - | chr8_2:28834004-28834023 | Msa1243300:intron | 35.0% | |
| AGAAGGAGTCTACTATTTCA+AGG | - | chr8_2:28834039-28834058 | Msa1243300:intron | 35.0% | |
| GAGTCTACTATTTCAAGGTA+TGG | - | chr8_2:28834044-28834063 | Msa1243300:intron | 35.0% | |
| ATTGGTTGTAATCAGTGAAG+GGG | - | chr8_2:28834465-28834484 | Msa1243300:intron | 35.0% | |
| TGGGATGAACGAAATTCTAA+CGG | + | chr8_2:28834598-28834617 | None:intergenic | 35.0% | |
| ATGCTGTAATTTGGGTGATT+TGG | - | chr8_2:28834717-28834736 | Msa1243300:intron | 35.0% | |
| ! | TGTAATTTGGGTGATTTGGA+AGG | - | chr8_2:28834721-28834740 | Msa1243300:intron | 35.0% |
| TGTAACTGATGTAGAGGATA+TGG | - | chr8_2:28834772-28834791 | Msa1243300:intron | 35.0% | |
| ! | GGATATGGTGGAGAAAATTA+AGG | - | chr8_2:28834787-28834806 | Msa1243300:intron | 35.0% |
| ! | GAAATGACGGAATTTACAAC+TGG | + | chr8_2:28834838-28834857 | None:intergenic | 35.0% |
| TCGTCTTAGTTGTTATGTGT+TGG | - | chr8_2:28834912-28834931 | Msa1243300:intron | 35.0% | |
| CGTCTTAGTTGTTATGTGTT+GGG | - | chr8_2:28834913-28834932 | Msa1243300:intron | 35.0% | |
| !! | CTGTTAGTTTGTTTCTGAGA+CGG | - | chr8_2:28834963-28834982 | Msa1243300:intron | 35.0% |
| !! | TGTTAGTTTGTTTCTGAGAC+GGG | - | chr8_2:28834964-28834983 | Msa1243300:intron | 35.0% |
| !!! | TTATAGGCAGCTGTTTTTAG+TGG | - | chr8_2:28835025-28835044 | Msa1243300:intron | 35.0% |
| ! | CTAATTGCTTTCTGGTGTAT+TGG | - | chr8_2:28835101-28835120 | Msa1243300:intron | 35.0% |
| !! | GCTTTGTTTGGTACTTGAAT+TGG | + | chr8_2:28835234-28835253 | None:intergenic | 35.0% |
| TTGTGCAAAGAATGTGGTAA+GGG | + | chr8_2:28835273-28835292 | None:intergenic | 35.0% | |
| ATTGTGCAAAGAATGTGGTA+AGG | + | chr8_2:28835274-28835293 | None:intergenic | 35.0% | |
| GACAAATTGTGCAAAGAATG+TGG | + | chr8_2:28835279-28835298 | None:intergenic | 35.0% | |
| ATTGAGGACCAAATTTGAGA+AGG | - | chr8_2:28835367-28835386 | Msa1243300:intron | 35.0% | |
| CTACGTTTCCTTCTCAAATT+TGG | + | chr8_2:28835378-28835397 | None:intergenic | 35.0% | |
| !! | TTGTTTTTCACAAACCTCTC+TGG | + | chr8_2:28835530-28835549 | None:intergenic | 35.0% |
| GCATGTGTATCTTTACTTAG+GGG | + | chr8_2:28835767-28835786 | None:intergenic | 35.0% | |
| GCTTACTTATTCTCTCCATA+TGG | - | chr8_2:28835814-28835833 | Msa1243300:intron | 35.0% | |
| TAGTATTTGATGGGACTGTT+TGG | - | chr8_2:28835852-28835871 | Msa1243300:intron | 35.0% | |
| ! | ATCTGTTTGTTGGGTATGTT+TGG | - | chr8_2:28835903-28835922 | Msa1243300:intron | 35.0% |
| TTTGTTGGGTATGTTTGGTT+TGG | - | chr8_2:28835908-28835927 | Msa1243300:intron | 35.0% | |
| !! | CTTTCAAGTTCTCTGAGTTA+AGG | + | chr8_2:28836206-28836225 | None:intergenic | 35.0% |
| ! | TGAAATGCCAAGTGCTTTTA+AGG | - | chr8_2:28836456-28836475 | Msa1243300:intron | 35.0% |
| !! | TTGAAGTGTGTACTGATTCT+AGG | - | chr8_2:28836520-28836539 | Msa1243300:CDS | 35.0% |
| AAAGGACAGCAAGAAGAAGA+AGG | - | chr8_2:28834022-28834041 | Msa1243300:intron | 40.0% | |
| GAAACACATAGATCAAGACG+AGG | + | chr8_2:28834209-28834228 | None:intergenic | 40.0% | |
| !! | GTGTTCTTGTGTTGCTTTCT+TGG | - | chr8_2:28834251-28834270 | Msa1243300:intron | 40.0% |
| !! | TTCTTGTGTTGCTTTCTTGG+AGG | - | chr8_2:28834254-28834273 | Msa1243300:intron | 40.0% |
| GATGAACGAAATTCTAACGG+TGG | + | chr8_2:28834595-28834614 | None:intergenic | 40.0% | |
| AGACCGAAAAAGCTTAGACA+AGG | - | chr8_2:28834677-28834696 | Msa1243300:intron | 40.0% | |
| GAATGGTGTAACTGATGTAG+AGG | - | chr8_2:28834766-28834785 | Msa1243300:intron | 40.0% | |
| AACTGATGTAGAGGATATGG+TGG | - | chr8_2:28834775-28834794 | Msa1243300:intron | 40.0% | |
| TTAAGGTTCAGTCTTGGGTT+TGG | - | chr8_2:28834804-28834823 | Msa1243300:intron | 40.0% | |
| !! | GTTAGTTTGTTTCTGAGACG+GGG | - | chr8_2:28834965-28834984 | Msa1243300:intron | 40.0% |
| !! | TTAGTTTGTTTCTGAGACGG+GGG | - | chr8_2:28834966-28834985 | Msa1243300:intron | 40.0% |
| GCCTATAAACACAACCAACA+GGG | + | chr8_2:28835013-28835032 | None:intergenic | 40.0% | |
| TGCCTATAAACACAACCAAC+AGG | + | chr8_2:28835014-28835033 | None:intergenic | 40.0% | |
| CAAATCCACAAGACCACAAA+CGG | + | chr8_2:28835080-28835099 | None:intergenic | 40.0% | |
| GGATTTGGCTAATTGCTTTC+TGG | - | chr8_2:28835093-28835112 | Msa1243300:intron | 40.0% | |
| TGCCTATCTTAAGTGGTGTT+GGG | - | chr8_2:28835154-28835173 | Msa1243300:intron | 40.0% | |
| !! | CAATCTCGGAAAGCTTTGTT+TGG | + | chr8_2:28835246-28835265 | None:intergenic | 40.0% |
| ! | GTGGTAAGGGTTTTCAATCT+CGG | + | chr8_2:28835260-28835279 | None:intergenic | 40.0% |
| AGTCTATGTTTGAGGGATTG+AGG | - | chr8_2:28835351-28835370 | Msa1243300:intron | 40.0% | |
| !!! | TTTTCTGGTTCGCTTTACTG+AGG | - | chr8_2:28835451-28835470 | Msa1243300:intron | 40.0% |
| !! | TTTCTGGTTCGCTTTACTGA+GGG | - | chr8_2:28835452-28835471 | Msa1243300:intron | 40.0% |
| ! | ACTTTCAAAGTGTTCCAGAG+AGG | - | chr8_2:28835513-28835532 | Msa1243300:intron | 40.0% |
| TGAGCATGAGATAGAAGACT+TGG | + | chr8_2:28835582-28835601 | None:intergenic | 40.0% | |
| TAGTTGTCATGTTTGCTCCT+TGG | + | chr8_2:28836135-28836154 | None:intergenic | 40.0% | |
| AATGTGTATACGGTTCACTG+AGG | + | chr8_2:28836166-28836185 | None:intergenic | 40.0% | |
| GAACGAAATTCTAACGGTGG+CGG | + | chr8_2:28834592-28834611 | None:intergenic | 45.0% | |
| ACCGAATTAGACAATCCCCA+CGG | + | chr8_2:28834884-28834903 | None:intergenic | 45.0% | |
| AAACACAACCAACAGGGCAA+GGG | + | chr8_2:28835007-28835026 | None:intergenic | 45.0% | |
| TAAACACAACCAACAGGGCA+AGG | + | chr8_2:28835008-28835027 | None:intergenic | 45.0% | |
| ! | GCCCTGTTGGTTGTGTTTAT+AGG | - | chr8_2:28835009-28835028 | Msa1243300:intron | 45.0% |
| !!! | TAGGCAGCTGTTTTTAGTGG+TGG | - | chr8_2:28835028-28835047 | Msa1243300:intron | 45.0% |
| ACCACAAACGGTATGGAACA+GGG | + | chr8_2:28835068-28835087 | None:intergenic | 45.0% | |
| !! | CGTTTGTGGTCTTGTGGATT+TGG | - | chr8_2:28835078-28835097 | Msa1243300:intron | 45.0% |
| CCACTTAAGATAGGCAGCTA+GGG | + | chr8_2:28835150-28835169 | None:intergenic | 45.0% | |
| ACCACTTAAGATAGGCAGCT+AGG | + | chr8_2:28835151-28835170 | None:intergenic | 45.0% | |
| CTGCCTATCTTAAGTGGTGT+TGG | - | chr8_2:28835153-28835172 | Msa1243300:intron | 45.0% | |
| AGCCCAACACCACTTAAGAT+AGG | + | chr8_2:28835159-28835178 | None:intergenic | 45.0% | |
| !! | TTCTGGTTCGCTTTACTGAG+GGG | - | chr8_2:28835453-28835472 | Msa1243300:intron | 45.0% |
| ! | AGGCGCTACATGAAAGGTTT+TGG | + | chr8_2:28836069-28836088 | None:intergenic | 45.0% |
| CTTTCATGTAGCGCCTTCAA+GGG | - | chr8_2:28836073-28836092 | Msa1243300:intron | 45.0% | |
| TTTCATGTAGCGCCTTCAAG+GGG | - | chr8_2:28836074-28836093 | Msa1243300:intron | 45.0% | |
| CATCCTTTAACACCCCTTGA+AGG | + | chr8_2:28836089-28836108 | None:intergenic | 45.0% | |
| TGCTGCTGCAACTTCTGTTT+CGG | + | chr8_2:28836661-28836680 | None:intergenic | 45.0% | |
| !!! | AATTTTTTTTTATTTCAATA+TGG | + | chr8_2:28834421-28834440 | None:intergenic | 5.0% |
| CCGAATTAGACAATCCCCAC+GGG | + | chr8_2:28834883-28834902 | None:intergenic | 50.0% | |
| CCCGTGGGGATTGTCTAATT+CGG | - | chr8_2:28834880-28834899 | Msa1243300:intron | 50.0% | |
| GCGTGCAAGTAGTCTGATGT+GGG | - | chr8_2:28834935-28834954 | Msa1243300:intron | 50.0% | |
| CGTGCAAGTAGTCTGATGTG+GGG | - | chr8_2:28834936-28834955 | Msa1243300:intron | 50.0% | |
| ! | TTCTTTTCCCCTTGCCCTGT+TGG | - | chr8_2:28834996-28835015 | Msa1243300:intron | 50.0% |
| AACACAACCAACAGGGCAAG+GGG | + | chr8_2:28835006-28835025 | None:intergenic | 50.0% | |
| TCCCTGTTCCATACCGTTTG+TGG | - | chr8_2:28835064-28835083 | Msa1243300:intron | 50.0% | |
| GACCACAAACGGTATGGAAC+AGG | + | chr8_2:28835069-28835088 | None:intergenic | 50.0% | |
| CCACAAGACCACAAACGGTA+TGG | + | chr8_2:28835075-28835094 | None:intergenic | 50.0% | |
| ! | CCATACCGTTTGTGGTCTTG+TGG | - | chr8_2:28835072-28835091 | Msa1243300:intron | 50.0% |
| CCCTAGCTGCCTATCTTAAG+TGG | - | chr8_2:28835147-28835166 | Msa1243300:intron | 50.0% | |
| !! | CCTTGAAGGCGCTACATGAA+AGG | + | chr8_2:28836075-28836094 | None:intergenic | 50.0% |
| CCTTTCATGTAGCGCCTTCA+AGG | - | chr8_2:28836072-28836091 | Msa1243300:intron | 50.0% | |
| ! | ATACGGTTCACTGAGGCATC+TGG | + | chr8_2:28836159-28836178 | None:intergenic | 50.0% |
| !! | TGCAGCGCTGGTTGCAATGA+AGG | + | chr8_2:28833986-28834005 | None:intergenic | 55.0% |
| ! | TTTTCAGACCACTGCAGCGC+TGG | + | chr8_2:28833998-28834017 | None:intergenic | 55.0% |
| ! | ATGAGTGGTGTTGGAACCCG+TGG | - | chr8_2:28834864-28834883 | Msa1243300:intron | 55.0% |
| ! | TGAGTGGTGTTGGAACCCGT+GGG | - | chr8_2:28834865-28834884 | Msa1243300:intron | 55.0% |
| GGCGTGCAAGTAGTCTGATG+TGG | - | chr8_2:28834934-28834953 | Msa1243300:intron | 55.0% | |
| !! | GCGCCTTCAAGGGGTGTTAA+AGG | - | chr8_2:28836083-28836102 | Msa1243300:intron | 55.0% |
| CATTGCAACCAGCGCTGCAG+TGG | - | chr8_2:28833987-28834006 | Msa1243300:intron | 60.0% | |
| ! | GAGTGGTGTTGGAACCCGTG+GGG | - | chr8_2:28834866-28834885 | Msa1243300:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 28833816 | 28836719 | 28833816 | ID=Msa1243300;Name=Msa1243300 |
| chr8_2 | mRNA | 28833816 | 28836719 | 28833816 | ID=Msa1243300-mRNA-1;Parent=Msa1243300;Name=Msa1243300-mRNA-1;_AED=0.64;_eAED=0.64;_QI=0|0|0|0.33|1|1|3|0|74 |
| chr8_2 | exon | 28836711 | 28836719 | 28836711 | ID=Msa1243300-mRNA-1:exon:9985;Parent=Msa1243300-mRNA-1 |
| chr8_2 | exon | 28836475 | 28836608 | 28836475 | ID=Msa1243300-mRNA-1:exon:9984;Parent=Msa1243300-mRNA-1 |
| chr8_2 | exon | 28833816 | 28833897 | 28833816 | ID=Msa1243300-mRNA-1:exon:9983;Parent=Msa1243300-mRNA-1 |
| chr8_2 | CDS | 28836711 | 28836719 | 28836711 | ID=Msa1243300-mRNA-1:cds;Parent=Msa1243300-mRNA-1 |
| chr8_2 | CDS | 28836475 | 28836608 | 28836475 | ID=Msa1243300-mRNA-1:cds;Parent=Msa1243300-mRNA-1 |
| chr8_2 | CDS | 28833816 | 28833897 | 28833816 | ID=Msa1243300-mRNA-1:cds;Parent=Msa1243300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
