Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0283960 | XP_024631492.1 | 95.472 | 530 | 21 | 2 | 1 | 530 | 1 | 527 | 0.0 | 957 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0283960 | sp|Q9LTS4|BH041_ARATH | 35.827 | 508 | 240 | 15 | 44 | 522 | 14 | 464 | 1.95e-60 | 209 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0283960 | G7IIK8 | 94.528 | 530 | 21 | 3 | 1 | 530 | 1 | 522 | 0.0 | 942 |
Gene ID | Type | Classification |
---|---|---|
Msa0283960 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0150620 | Msa0283960 | 0.816268 | 6.037280e-52 | -8.615850e-47 |
Msa0218090 | Msa0283960 | 0.811239 | 7.731182e-51 | -8.615850e-47 |
Msa0234740 | Msa0283960 | 0.808144 | 3.578691e-50 | -8.615850e-47 |
Msa0273070 | Msa0283960 | 0.800445 | 1.436345e-48 | -8.615850e-47 |
Msa0283960 | Msa0393100 | 0.806760 | 7.034618e-50 | -8.615850e-47 |
Msa0283960 | Msa0740630 | 0.805493 | 1.299885e-49 | -8.615850e-47 |
Msa0283960 | Msa0820880 | 0.808412 | 3.137027e-50 | -8.615850e-47 |
Msa0283960 | Msa0971060 | 0.802535 | 5.358909e-49 | -8.615850e-47 |
Msa0283960 | Msa1027910 | 0.806993 | 6.278819e-50 | -8.615850e-47 |
Msa0283960 | Msa1030210 | 0.802355 | 5.834582e-49 | -8.615850e-47 |
Msa0283960 | Msa1069250 | 0.808315 | 3.289939e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0283960 | MtrunA17_Chr2g0299471 | 95.556 | 450 | 17 | 2 | 81 | 530 | 6 | 452 | 0.0 | 797 |
Msa0283960 | MtrunA17_Chr5g0400661 | 28.136 | 295 | 176 | 10 | 247 | 518 | 48 | 329 | 9.27e-13 | 69.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0283960 | AT5G56960.2 | 39.668 | 542 | 265 | 16 | 12 | 522 | 13 | 523 | 2.05e-90 | 287 |
Msa0283960 | AT5G56960.1 | 35.827 | 508 | 240 | 15 | 44 | 522 | 14 | 464 | 1.98e-61 | 209 |
Find 92 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGATGTATTGATTCGATTAT+TGG | 0.081677 | 2_3:+21725656 | Msa0283960:CDS |
CTAAAATTTGACCCTATATT+AGG | 0.183433 | 2_3:-21724706 | None:intergenic |
ATCATGTGAGTCATATATTT+TGG | 0.239208 | 2_3:-21727754 | None:intergenic |
GATGCTCTCACATTTGTCTT+TGG | 0.245611 | 2_3:+21723057 | Msa0283960:CDS |
GAATAGTCGTTTGTCCTTCT+TGG | 0.247039 | 2_3:+21723225 | Msa0283960:intron |
AAATATATACTTTGATAATA+TGG | 0.249981 | 2_3:-21723090 | None:intergenic |
CAATTACCAAGTTCTTCTTT+AGG | 0.263208 | 2_3:+21723274 | Msa0283960:CDS |
AATTACCAAGTTCTTCTTTA+GGG | 0.266258 | 2_3:+21723275 | Msa0283960:CDS |
CCACTCTTCTCACTGCTTCC+TGG | 0.304864 | 2_3:-21727703 | None:intergenic |
CTTCCAAATGCACTAGCTTC+TGG | 0.330949 | 2_3:-21724664 | None:intergenic |
TACTTCATCAAATAACCTTC+AGG | 0.345353 | 2_3:+21725757 | Msa0283960:CDS |
CATGATAAAAGTCCTAATAT+AGG | 0.347025 | 2_3:+21724694 | Msa0283960:CDS |
CTCCTTAGCTGTTATCAGTA+TGG | 0.357487 | 2_3:-21725397 | None:intergenic |
AATATGAGAGATGAGTATTC+AGG | 0.359714 | 2_3:-21724382 | None:intergenic |
GGAGACATTGAAATCTTTGA+TGG | 0.361566 | 2_3:+21725416 | Msa0283960:CDS |
ATGGGACGAGGAAGCCTTCC+AGG | 0.369330 | 2_3:+21727685 | Msa0283960:CDS |
CATCCAGAAGCTAGTGCATT+TGG | 0.369406 | 2_3:+21724661 | Msa0283960:CDS |
ATGATAAAAGTCCTAATATA+GGG | 0.380695 | 2_3:+21724695 | Msa0283960:CDS |
GGTAGTAGTGTGTTTGAAAC+AGG | 0.397618 | 2_3:-21724490 | None:intergenic |
TTACTTAGAGCTGCAACAAT+TGG | 0.401288 | 2_3:+21723708 | Msa0283960:CDS |
TCATTCTCAGTGTGTGTTGT+AGG | 0.401735 | 2_3:-21724559 | None:intergenic |
ACATGTCAACTTGGTTTCAA+TGG | 0.402871 | 2_3:+21725698 | Msa0283960:CDS |
ATCAAATAACCTTCAGGCTA+AGG | 0.429025 | 2_3:+21725763 | Msa0283960:CDS |
AATTCAGTTCTGACGGCTAC+AGG | 0.433952 | 2_3:-21723008 | None:intergenic |
GAATATTTATTCCTCCAAGT+TGG | 0.443689 | 2_3:-21724456 | None:intergenic |
GGGGTGTAGATAGAACATTT+TGG | 0.464905 | 2_3:-21724600 | None:intergenic |
AATATTTATTCCTCCAAGTT+GGG | 0.465125 | 2_3:-21724455 | None:intergenic |
GGTAATTGTTGAAGTTGAAA+AGG | 0.465384 | 2_3:-21724511 | None:intergenic |
AATTGTTGCAGCTCTAAGTA+AGG | 0.467423 | 2_3:-21723706 | None:intergenic |
TCACCTGATCCTACCCAACT+TGG | 0.482330 | 2_3:+21724442 | Msa0283960:CDS |
CGTTCTCTAATGCAATCTCT+TGG | 0.486499 | 2_3:+21723035 | Msa0283960:CDS |
AATTGTGTTGGTGTGATTTG+AGG | 0.486696 | 2_3:-21724532 | None:intergenic |
CCTCCAAGTTGGGTAGGATC+AGG | 0.489579 | 2_3:-21724445 | None:intergenic |
AGTCGTTTGTCCTTCTTGGA+TGG | 0.492248 | 2_3:+21723229 | Msa0283960:intron |
GTTGTAGGGAATAATTGTGT+TGG | 0.494305 | 2_3:-21724544 | None:intergenic |
AACAAAGGAGAAATTGAGCT+TGG | 0.495316 | 2_3:+21723984 | Msa0283960:CDS |
CATTCTCAGTGTGTGTTGTA+GGG | 0.498942 | 2_3:-21724558 | None:intergenic |
AATTGAGGTGGAGAAGTTCC+AGG | 0.500124 | 2_3:-21724418 | None:intergenic |
TCTTCTCACTGCTTCCTGGA+AGG | 0.503286 | 2_3:-21727699 | None:intergenic |
TTTACAGGAAGCAAGGATCA+AGG | 0.513199 | 2_3:+21723859 | Msa0283960:intron |
GTGTTTGAAACAGGTCTCAT+TGG | 0.519603 | 2_3:-21724481 | None:intergenic |
GAGGTTGATGTTGATGAGAA+GGG | 0.522446 | 2_3:-21724621 | None:intergenic |
AGAGATGAGTATTCAGGAGT+AGG | 0.522961 | 2_3:-21724376 | None:intergenic |
TGCGCAGGCGGATATTCAAA+CGG | 0.526338 | 2_3:+21724243 | Msa0283960:intron |
TCAAGATCAACATGTCAACT+TGG | 0.527432 | 2_3:+21725689 | Msa0283960:CDS |
CTGAGTAATCCTTAGCCTGA+AGG | 0.534544 | 2_3:-21725772 | None:intergenic |
GGAGGTTGATGTTGATGAGA+AGG | 0.546970 | 2_3:-21724622 | None:intergenic |
TTTATTCCTCCAAGTTGGGT+AGG | 0.547865 | 2_3:-21724451 | None:intergenic |
TGATGAAGTAAATCATTCCC+TGG | 0.552419 | 2_3:-21725744 | None:intergenic |
CCTGATCCTACCCAACTTGG+AGG | 0.553608 | 2_3:+21724445 | Msa0283960:CDS |
AGAAGATGAATCCATGGTGG+TGG | 0.555276 | 2_3:+21725596 | Msa0283960:CDS |
GTTTATGCAGATAAGTGAAT+GGG | 0.559981 | 2_3:+21727667 | Msa0283960:intron |
TTCCATACTGATAACAGCTA+AGG | 0.563069 | 2_3:+21725395 | Msa0283960:CDS |
AGGTTGATGTTGATGAGAAG+GGG | 0.567417 | 2_3:-21724620 | None:intergenic |
TTTGAAACAGGTCTCATTGG+TGG | 0.575275 | 2_3:-21724478 | None:intergenic |
TTCATCAGAAGATGAATCCA+TGG | 0.575458 | 2_3:+21725590 | Msa0283960:CDS |
ACACTCCCTAAAGAAGAACT+TGG | 0.577549 | 2_3:-21723280 | None:intergenic |
ACAAATACAAATCATGCACC+AGG | 0.579495 | 2_3:+21725726 | Msa0283960:CDS |
ATGAGATCACTATCAACAGC+AGG | 0.579733 | 2_3:+21724349 | Msa0283960:CDS |
CTTAGAGCATTACTTCCTCA+AGG | 0.580881 | 2_3:+21724889 | Msa0283960:CDS |
GGTTTATGCAGATAAGTGAA+TGG | 0.584114 | 2_3:+21727666 | Msa0283960:intron |
CAGTTCTGACGGCTACAGGA+AGG | 0.586512 | 2_3:-21723004 | None:intergenic |
CTTCAGGCTAAGGATTACTC+AGG | 0.589180 | 2_3:+21725773 | Msa0283960:CDS |
ATGATGAAGTTGATTACTCG+AGG | 0.589833 | 2_3:-21724815 | None:intergenic |
CAAGAGATTGCATTAGAGAA+CGG | 0.600137 | 2_3:-21723034 | None:intergenic |
AGTTCTGACGGCTACAGGAA+GGG | 0.603804 | 2_3:-21723003 | None:intergenic |
TTACGTACCTTTGTTCCTTG+AGG | 0.605079 | 2_3:-21724904 | None:intergenic |
ACGGATAAATTCAGTTCTGA+CGG | 0.607682 | 2_3:-21723015 | None:intergenic |
ATTGTAGAAACCATCCAAGA+AGG | 0.610273 | 2_3:-21723239 | None:intergenic |
ATTGAAGATGAAGATGATGA+AGG | 0.610501 | 2_3:-21724328 | None:intergenic |
GTAGGATCAGGTGAAAATTG+AGG | 0.615518 | 2_3:-21724433 | None:intergenic |
GGTTGATGTTGATGAGAAGG+GGG | 0.616407 | 2_3:-21724619 | None:intergenic |
TGATTCCTAAAAGCTAGTCC+AGG | 0.617478 | 2_3:-21723679 | None:intergenic |
CCTATAACCACATATATGGA+AGG | 0.620515 | 2_3:+21722972 | None:intergenic |
TGATGAAGTTGATTACTCGA+GGG | 0.623889 | 2_3:-21724814 | None:intergenic |
ATTACTTCCTCAAGGAACAA+AGG | 0.632442 | 2_3:+21724897 | Msa0283960:CDS |
CAGAAGCTAGTGCATTTGGA+AGG | 0.633413 | 2_3:+21724665 | Msa0283960:CDS |
GCAGATAAGTGAATGGGACG+AGG | 0.636589 | 2_3:+21727673 | Msa0283960:intron |
GGATCAGGTGAAAATTGAGG+TGG | 0.639584 | 2_3:-21724430 | None:intergenic |
TAAAAGCTAGTCCAGGAACA+CGG | 0.640221 | 2_3:-21723672 | None:intergenic |
ATATTCAACATAAATCCACC+TGG | 0.642233 | 2_3:+21724400 | Msa0283960:CDS |
GATGAAGTTGATTACTCGAG+GGG | 0.643129 | 2_3:-21724813 | None:intergenic |
CACTTGCAAGTCCACCACCA+TGG | 0.644380 | 2_3:-21725607 | None:intergenic |
CCAGGAAGCAGTGAGAAGAG+TGG | 0.648622 | 2_3:+21727703 | Msa0283960:CDS |
GACTTGCAAGTGAACATGAT+GGG | 0.650809 | 2_3:+21725618 | Msa0283960:CDS |
GAAGATGAAGATGATGAAGG+TGG | 0.654902 | 2_3:-21724325 | None:intergenic |
AATACAGACACAATTCTACC+AGG | 0.662180 | 2_3:+21723756 | Msa0283960:CDS |
GGACTTGCAAGTGAACATGA+TGG | 0.678801 | 2_3:+21725617 | Msa0283960:CDS |
TGAGGTGGAGAAGTTCCAGG+TGG | 0.714377 | 2_3:-21724415 | None:intergenic |
CAAATACAAATCATGCACCA+GGG | 0.722090 | 2_3:+21725727 | Msa0283960:CDS |
ATCAGAAGATGAATCCATGG+TGG | 0.734427 | 2_3:+21725593 | Msa0283960:CDS |
TGACTTGATACAGTCCCATG+TGG | 0.800087 | 2_3:+21727730 | Msa0283960:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATTAAATTTTAATATTTA+TGG | + | chr2_3:21726059-21726078 | Msa0283960:intron | 0.0% |
!!! | AAATATATACTTTGATAATA+TGG | - | chr2_3:21723093-21723112 | None:intergenic | 10.0% |
!! | AAAGTTTATTGTAATTAAAT+TGG | + | chr2_3:21723376-21723395 | Msa0283960:intron | 10.0% |
!!! | TATTTTTTTATTTACATCAT+TGG | - | chr2_3:21725156-21725175 | None:intergenic | 10.0% |
!! | AAATAAAAAAATAAAATACG+CGG | + | chr2_3:21725163-21725182 | Msa0283960:intron | 10.0% |
!!! | AAAATTTAATTTATACATGA+AGG | - | chr2_3:21726051-21726070 | None:intergenic | 10.0% |
!!! | ATTTTCAAATTTTTCAAAAA+TGG | + | chr2_3:21726553-21726572 | Msa0283960:intron | 10.0% |
!!! | ACTTTTTATAATAGAATTTA+TGG | - | chr2_3:21726929-21726948 | None:intergenic | 10.0% |
!!! | AGTTTAGAATATAATAATGT+AGG | - | chr2_3:21723136-21723155 | None:intergenic | 15.0% |
!! | AATATTGTTTCGTTAAAAAT+TGG | + | chr2_3:21724078-21724097 | Msa0283960:intron | 15.0% |
!! | ATATTGTTTCGTTAAAAATT+GGG | + | chr2_3:21724079-21724098 | Msa0283960:intron | 15.0% |
!! | TGATTATAAAACAATATGAT+GGG | - | chr2_3:21724938-21724957 | None:intergenic | 15.0% |
!! | TTGATTATAAAACAATATGA+TGG | - | chr2_3:21724939-21724958 | None:intergenic | 15.0% |
!! | ATTAATTCGTGAAATAATTA+AGG | + | chr2_3:21725833-21725852 | Msa0283960:intron | 15.0% |
!! | TTAATTCGTGAAATAATTAA+GGG | + | chr2_3:21725834-21725853 | Msa0283960:intron | 15.0% |
!!! | TGTTTTTTTTTTTTTTTGAC+AGG | + | chr2_3:21725894-21725913 | Msa0283960:intron | 15.0% |
!!! | GTTTTTTTTTTTTTTTGACA+GGG | + | chr2_3:21725895-21725914 | Msa0283960:intron | 15.0% |
!!! | ATTGGTTTATGTATAAAAAT+TGG | - | chr2_3:21727446-21727465 | None:intergenic | 15.0% |
!! | TAGAATATAATAATGTAGGT+AGG | - | chr2_3:21723132-21723151 | None:intergenic | 20.0% |
!!! | TACAACTTGGTTTTTTTTTT+TGG | + | chr2_3:21723203-21723222 | Msa0283960:intron | 20.0% |
!!! | AATTCTTCTTTTTTTTTTGC+TGG | + | chr2_3:21723422-21723441 | Msa0283960:intron | 20.0% |
!!! | AGTATAGCAATAATTTTCTT+AGG | - | chr2_3:21723796-21723815 | None:intergenic | 20.0% |
!! | TGCTATACTTGTATATATTA+AGG | + | chr2_3:21723807-21723826 | Msa0283960:intron | 20.0% |
!! | ACATATAATGTAAATGTTGT+CGG | + | chr2_3:21724053-21724072 | Msa0283960:intron | 20.0% |
!! | TATTGTTTCGTTAAAAATTG+GGG | + | chr2_3:21724080-21724099 | Msa0283960:intron | 20.0% |
!!! | TTGATTTAACCACATTTTTT+CGG | + | chr2_3:21724219-21724238 | Msa0283960:intron | 20.0% |
!! | ATGATAAAAGTCCTAATATA+GGG | + | chr2_3:21724695-21724714 | Msa0283960:CDS | 20.0% |
!! | TAATCTATACTCTACAAAAT+AGG | - | chr2_3:21725205-21725224 | None:intergenic | 20.0% |
!!! | ATCTAGAATAATGATATGAT+CGG | - | chr2_3:21726378-21726397 | None:intergenic | 20.0% |
!!! | TTCAAATTTTTCAAAAATGG+TGG | + | chr2_3:21726556-21726575 | Msa0283960:intron | 20.0% |
!!! | ATTTTCATCGACATAATAAT+GGG | - | chr2_3:21726699-21726718 | None:intergenic | 20.0% |
!!! | AATTTTCATCGACATAATAA+TGG | - | chr2_3:21726700-21726719 | None:intergenic | 20.0% |
!! | AGTATACAACTTCAAATATA+TGG | + | chr2_3:21726729-21726748 | Msa0283960:intron | 20.0% |
!! | ACTTCAAATATATGGTTAAA+AGG | + | chr2_3:21726737-21726756 | Msa0283960:intron | 20.0% |
!!! | TGATAAAGTGAATTCTATTT+TGG | + | chr2_3:21726866-21726885 | Msa0283960:intron | 20.0% |
!!! | TGGATTATTTGTTATATAGT+AGG | - | chr2_3:21727133-21727152 | None:intergenic | 20.0% |
!! | TTTCTCGAAAACAATATATA+TGG | - | chr2_3:21727153-21727172 | None:intergenic | 20.0% |
!!! | AGCATATCTCATTTTTTTTA+AGG | + | chr2_3:21727305-21727324 | Msa0283960:intron | 20.0% |
!!! | ATTTTGTGGTATGTATTATA+GGG | - | chr2_3:21727583-21727602 | None:intergenic | 20.0% |
!!! | AAAGATGGAAACTAATTTTA+TGG | + | chr2_3:21727621-21727640 | Msa0283960:intron | 20.0% |
! | ATATAATAATGTAGGTAGGT+AGG | - | chr2_3:21723128-21723147 | None:intergenic | 25.0% |
! | AATTACCAAGTTCTTCTTTA+GGG | + | chr2_3:21723275-21723294 | Msa0283960:CDS | 25.0% |
!! | AACAGCTTTTTAATCAATAC+AGG | + | chr2_3:21723308-21723327 | Msa0283960:CDS | 25.0% |
!!! | TAGCATGTTTTTGTTTTTAC+AGG | + | chr2_3:21723844-21723863 | Msa0283960:intron | 25.0% |
!! | ATAGAGAATTTTCAGTTTCT+TGG | - | chr2_3:21723897-21723916 | None:intergenic | 25.0% |
! | AATTTGAACTTTATTCTCTG+AGG | + | chr2_3:21724156-21724175 | Msa0283960:intron | 25.0% |
! | AATATTTATTCCTCCAAGTT+GGG | - | chr2_3:21724458-21724477 | None:intergenic | 25.0% |
! | CATGATAAAAGTCCTAATAT+AGG | + | chr2_3:21724694-21724713 | Msa0283960:CDS | 25.0% |
! | CTAAAATTTGACCCTATATT+AGG | - | chr2_3:21724709-21724728 | None:intergenic | 25.0% |
! | ATGCATAATTATGTACCATA+AGG | + | chr2_3:21724958-21724977 | Msa0283960:intron | 25.0% |
! | TTCAAAAACATTGTTCCTTA+TGG | - | chr2_3:21724976-21724995 | None:intergenic | 25.0% |
! | AGAGACATTAAAAATCTTGA+CGG | - | chr2_3:21725019-21725038 | None:intergenic | 25.0% |
! | AATCGTTTGCAAGAAAAAAT+TGG | - | chr2_3:21725062-21725081 | None:intergenic | 25.0% |
!!! | CTAACATTCATGTTTTTTGT+CGG | - | chr2_3:21725295-21725314 | None:intergenic | 25.0% |
!!! | TGATGTATTGATTCGATTAT+TGG | + | chr2_3:21725656-21725675 | Msa0283960:CDS | 25.0% |
!!! | GTCTCTAAACTTTTAGTTAA+AGG | + | chr2_3:21726412-21726431 | Msa0283960:intron | 25.0% |
!! | AAAGTATTTATGGTTTATCG+TGG | - | chr2_3:21726494-21726513 | None:intergenic | 25.0% |
!!! | ATTGCCTTATTTACATAAGT+CGG | + | chr2_3:21726526-21726545 | Msa0283960:intron | 25.0% |
!!! | ATTACCGACTTATGTAAATA+AGG | - | chr2_3:21726533-21726552 | None:intergenic | 25.0% |
!! | AATTGATAACTCAGACAATT+AGG | + | chr2_3:21726624-21726643 | Msa0283960:intron | 25.0% |
!!! | CAATTAGGTTTTGAAAATAG+TGG | + | chr2_3:21726639-21726658 | Msa0283960:intron | 25.0% |
!! | TTTTCATCGACATAATAATG+GGG | - | chr2_3:21726698-21726717 | None:intergenic | 25.0% |
! | CAAATATATGGTTAAAAGGA+AGG | + | chr2_3:21726741-21726760 | Msa0283960:intron | 25.0% |
!! | TATATGACTTGTGTAATCTT+TGG | - | chr2_3:21726840-21726859 | None:intergenic | 25.0% |
! | TTATATTCATTGTGAGTGTA+TGG | + | chr2_3:21727243-21727262 | Msa0283960:intron | 25.0% |
! | AAAGAGTTCAATACTTCAAT+TGG | - | chr2_3:21727464-21727483 | None:intergenic | 25.0% |
!! | GATTTTGTGGTATGTATTAT+AGG | - | chr2_3:21727584-21727603 | None:intergenic | 25.0% |
TTGATTGTGCTTATACAACT+TGG | + | chr2_3:21723190-21723209 | Msa0283960:intron | 30.0% | |
CAATTACCAAGTTCTTCTTT+AGG | + | chr2_3:21723274-21723293 | Msa0283960:CDS | 30.0% | |
ATATTAAGGCTATGTTGCTA+AGG | + | chr2_3:21723821-21723840 | Msa0283960:intron | 30.0% | |
!!! | TTTTGTTTTTACAGGAAGCA+AGG | + | chr2_3:21723852-21723871 | Msa0283960:intron | 30.0% |
!!! | TTTTCAGACTGTTGTTTTCA+TGG | + | chr2_3:21723956-21723975 | Msa0283960:intron | 30.0% |
!!! | TTTCAGACTGTTGTTTTCAT+GGG | + | chr2_3:21723957-21723976 | Msa0283960:intron | 30.0% |
TATTAGAAGCGAGAATTTAC+GGG | - | chr2_3:21724115-21724134 | None:intergenic | 30.0% | |
CTATTAGAAGCGAGAATTTA+CGG | - | chr2_3:21724116-21724135 | None:intergenic | 30.0% | |
! | ATAGTCTTTTTACAACTCCA+AGG | + | chr2_3:21724132-21724151 | Msa0283960:intron | 30.0% |
! | TAGTCTTTTTACAACTCCAA+GGG | + | chr2_3:21724133-21724152 | Msa0283960:intron | 30.0% |
GAATAAAGTTCAAATTCCCT+TGG | - | chr2_3:21724152-21724171 | None:intergenic | 30.0% | |
ATTGAAGATGAAGATGATGA+AGG | - | chr2_3:21724331-21724350 | None:intergenic | 30.0% | |
AATATGAGAGATGAGTATTC+AGG | - | chr2_3:21724385-21724404 | None:intergenic | 30.0% | |
ATATTCAACATAAATCCACC+TGG | + | chr2_3:21724400-21724419 | Msa0283960:CDS | 30.0% | |
GAATATTTATTCCTCCAAGT+TGG | - | chr2_3:21724459-21724478 | None:intergenic | 30.0% | |
GGTAATTGTTGAAGTTGAAA+AGG | - | chr2_3:21724514-21724533 | None:intergenic | 30.0% | |
TCTATACTCTACAAAATAGG+TGG | - | chr2_3:21725202-21725221 | None:intergenic | 30.0% | |
TACTTCATCAAATAACCTTC+AGG | + | chr2_3:21725757-21725776 | Msa0283960:CDS | 30.0% | |
!! | TTTTTGGTAAGCAAAATGCT+AGG | + | chr2_3:21726163-21726182 | Msa0283960:intron | 30.0% |
TGTAAATAAGGCAATTGCTA+GGG | - | chr2_3:21726521-21726540 | None:intergenic | 30.0% | |
ATGTAAATAAGGCAATTGCT+AGG | - | chr2_3:21726522-21726541 | None:intergenic | 30.0% | |
!!! | TTAGGTTTTGAAAATAGTGG+CGG | + | chr2_3:21726642-21726661 | Msa0283960:intron | 30.0% |
! | GTGCTTGAAATATACTGATT+AGG | + | chr2_3:21726786-21726805 | Msa0283960:intron | 30.0% |
! | AATATACTGATTAGGTCGAT+TGG | + | chr2_3:21726794-21726813 | Msa0283960:intron | 30.0% |
!!! | TATCTATGCTGACTTGTTTT+CGG | - | chr2_3:21726898-21726917 | None:intergenic | 30.0% |
AAGAAAGAGTAGTAAACTTG+TGG | + | chr2_3:21726962-21726981 | Msa0283960:intron | 30.0% | |
TAGTCTGTCAAATGTCAATT+TGG | + | chr2_3:21727074-21727093 | Msa0283960:intron | 30.0% | |
TTGTTATATAGTAGGTCGTT+TGG | - | chr2_3:21727125-21727144 | None:intergenic | 30.0% | |
! | TTGATCAATGATGATGACAA+AGG | - | chr2_3:21727535-21727554 | None:intergenic | 30.0% |
CATACCACAAAATCTTCATT+AGG | + | chr2_3:21727590-21727609 | Msa0283960:intron | 30.0% | |
! | GGAAGAATATTAACCAGTTT+TGG | + | chr2_3:21727642-21727661 | Msa0283960:intron | 30.0% |
!! | AGAATATTAACCAGTTTTGG+TGG | + | chr2_3:21727645-21727664 | Msa0283960:intron | 30.0% |
GTTTATGCAGATAAGTGAAT+GGG | + | chr2_3:21727667-21727686 | Msa0283960:intron | 30.0% | |
!!! | TCATATATTTTGGTCCACAT+GGG | - | chr2_3:21727747-21727766 | None:intergenic | 30.0% |
! | ACGGATAAATTCAGTTCTGA+CGG | - | chr2_3:21723018-21723037 | None:intergenic | 35.0% |
CAAGAGATTGCATTAGAGAA+CGG | - | chr2_3:21723037-21723056 | None:intergenic | 35.0% | |
AGCACAATCAACAACTACTA+TGG | - | chr2_3:21723181-21723200 | None:intergenic | 35.0% | |
ATTGTAGAAACCATCCAAGA+AGG | - | chr2_3:21723242-21723261 | None:intergenic | 35.0% | |
!!! | TTTTTTTTTAGCCGTGTTCC+TGG | + | chr2_3:21723661-21723680 | Msa0283960:intron | 35.0% |
!! | AATTGTTGCAGCTCTAAGTA+AGG | - | chr2_3:21723709-21723728 | None:intergenic | 35.0% |
TTACTTAGAGCTGCAACAAT+TGG | + | chr2_3:21723708-21723727 | Msa0283960:CDS | 35.0% | |
AATACAGACACAATTCTACC+AGG | + | chr2_3:21723756-21723775 | Msa0283960:CDS | 35.0% | |
!!! | TTCAGACTGTTGTTTTCATG+GGG | + | chr2_3:21723958-21723977 | Msa0283960:intron | 35.0% |
AACAAAGGAGAAATTGAGCT+TGG | + | chr2_3:21723984-21724003 | Msa0283960:CDS | 35.0% | |
GTCTGTCTTGAAAAATCTTC+AGG | - | chr2_3:21724286-21724305 | None:intergenic | 35.0% | |
! | AATTGTGTTGGTGTGATTTG+AGG | - | chr2_3:21724535-21724554 | None:intergenic | 35.0% |
GTTGTAGGGAATAATTGTGT+TGG | - | chr2_3:21724547-21724566 | None:intergenic | 35.0% | |
! | GGATGTGTCACATAATTTTG+CGG | - | chr2_3:21724646-21724665 | None:intergenic | 35.0% |
! | TGATGAAGTTGATTACTCGA+GGG | - | chr2_3:21724817-21724836 | None:intergenic | 35.0% |
! | ATGATGAAGTTGATTACTCG+AGG | - | chr2_3:21724818-21724837 | None:intergenic | 35.0% |
ATTACTTCCTCAAGGAACAA+AGG | + | chr2_3:21724897-21724916 | Msa0283960:CDS | 35.0% | |
AAACATTATGTTGATCCGAG+TGG | + | chr2_3:21725094-21725113 | Msa0283960:intron | 35.0% | |
TTCCATACTGATAACAGCTA+AGG | + | chr2_3:21725395-21725414 | Msa0283960:CDS | 35.0% | |
GGAGACATTGAAATCTTTGA+TGG | + | chr2_3:21725416-21725435 | Msa0283960:CDS | 35.0% | |
TTCATCAGAAGATGAATCCA+TGG | + | chr2_3:21725590-21725609 | Msa0283960:CDS | 35.0% | |
TCAAGATCAACATGTCAACT+TGG | + | chr2_3:21725689-21725708 | Msa0283960:CDS | 35.0% | |
ACATGTCAACTTGGTTTCAA+TGG | + | chr2_3:21725698-21725717 | Msa0283960:CDS | 35.0% | |
ACAAATACAAATCATGCACC+AGG | + | chr2_3:21725726-21725745 | Msa0283960:CDS | 35.0% | |
CAAATACAAATCATGCACCA+GGG | + | chr2_3:21725727-21725746 | Msa0283960:CDS | 35.0% | |
TGATGAAGTAAATCATTCCC+TGG | - | chr2_3:21725747-21725766 | None:intergenic | 35.0% | |
ATCAAATAACCTTCAGGCTA+AGG | + | chr2_3:21725763-21725782 | Msa0283960:CDS | 35.0% | |
!!! | AACGGTTTTTAGAATGACAC+TGG | - | chr2_3:21726207-21726226 | None:intergenic | 35.0% |
!!! | GTCGTTGTTAGAGTTTTGAA+CGG | - | chr2_3:21726225-21726244 | None:intergenic | 35.0% |
! | TGACTTGTGTAATCTTTGGA+TGG | - | chr2_3:21726836-21726855 | None:intergenic | 35.0% |
CTACTCTTTCTTAACGATTG+AGG | - | chr2_3:21726954-21726973 | None:intergenic | 35.0% | |
TTATATAGTAGGTCGTTTGG+TGG | - | chr2_3:21727122-21727141 | None:intergenic | 35.0% | |
! | CTCACCTAATGAAGATTTTG+TGG | - | chr2_3:21727597-21727616 | None:intergenic | 35.0% |
CACAAAATCTTCATTAGGTG+AGG | + | chr2_3:21727595-21727614 | Msa0283960:intron | 35.0% | |
CATTAGGTGAGGAAAAAAGA+TGG | + | chr2_3:21727606-21727625 | Msa0283960:intron | 35.0% | |
GGTTTATGCAGATAAGTGAA+TGG | + | chr2_3:21727666-21727685 | Msa0283960:intron | 35.0% | |
CGTTCTCTAATGCAATCTCT+TGG | + | chr2_3:21723035-21723054 | Msa0283960:CDS | 40.0% | |
GATGCTCTCACATTTGTCTT+TGG | + | chr2_3:21723057-21723076 | Msa0283960:CDS | 40.0% | |
GAATAGTCGTTTGTCCTTCT+TGG | + | chr2_3:21723225-21723244 | Msa0283960:intron | 40.0% | |
ACACTCCCTAAAGAAGAACT+TGG | - | chr2_3:21723283-21723302 | None:intergenic | 40.0% | |
AGATTCACTCTTCAACCTTG+TGG | + | chr2_3:21723472-21723491 | Msa0283960:intron | 40.0% | |
! | CTCTTCAACCTTGTGGTTTT+CGG | + | chr2_3:21723479-21723498 | Msa0283960:intron | 40.0% |
GTAAAGATCTCGTGCTCTAA+CGG | - | chr2_3:21723598-21723617 | None:intergenic | 40.0% | |
TAAAAGCTAGTCCAGGAACA+CGG | - | chr2_3:21723675-21723694 | None:intergenic | 40.0% | |
TGATTCCTAAAAGCTAGTCC+AGG | - | chr2_3:21723682-21723701 | None:intergenic | 40.0% | |
TAGGACAACAAGTACTAACC+TGG | - | chr2_3:21723777-21723796 | None:intergenic | 40.0% | |
TTTACAGGAAGCAAGGATCA+AGG | + | chr2_3:21723859-21723878 | Msa0283960:intron | 40.0% | |
GAAGATGAAGATGATGAAGG+TGG | - | chr2_3:21724328-21724347 | None:intergenic | 40.0% | |
ATGAGATCACTATCAACAGC+AGG | + | chr2_3:21724349-21724368 | Msa0283960:CDS | 40.0% | |
AGAGATGAGTATTCAGGAGT+AGG | - | chr2_3:21724379-21724398 | None:intergenic | 40.0% | |
GTAGGATCAGGTGAAAATTG+AGG | - | chr2_3:21724436-21724455 | None:intergenic | 40.0% | |
! | TTTATTCCTCCAAGTTGGGT+AGG | - | chr2_3:21724454-21724473 | None:intergenic | 40.0% |
! | TTTGAAACAGGTCTCATTGG+TGG | - | chr2_3:21724481-21724500 | None:intergenic | 40.0% |
! | GTGTTTGAAACAGGTCTCAT+TGG | - | chr2_3:21724484-21724503 | None:intergenic | 40.0% |
! | GGTAGTAGTGTGTTTGAAAC+AGG | - | chr2_3:21724493-21724512 | None:intergenic | 40.0% |
CATTCTCAGTGTGTGTTGTA+GGG | - | chr2_3:21724561-21724580 | None:intergenic | 40.0% | |
TCATTCTCAGTGTGTGTTGT+AGG | - | chr2_3:21724562-21724581 | None:intergenic | 40.0% | |
! | GGGGTGTAGATAGAACATTT+TGG | - | chr2_3:21724603-21724622 | None:intergenic | 40.0% |
!! | AGGTTGATGTTGATGAGAAG+GGG | - | chr2_3:21724623-21724642 | None:intergenic | 40.0% |
!! | GAGGTTGATGTTGATGAGAA+GGG | - | chr2_3:21724624-21724643 | None:intergenic | 40.0% |
! | TGTGTCACATAATTTTGCGG+AGG | - | chr2_3:21724643-21724662 | None:intergenic | 40.0% |
! | GATGAAGTTGATTACTCGAG+GGG | - | chr2_3:21724816-21724835 | None:intergenic | 40.0% |
! | CTTAGAGCATTACTTCCTCA+AGG | + | chr2_3:21724889-21724908 | Msa0283960:CDS | 40.0% |
TTACGTACCTTTGTTCCTTG+AGG | - | chr2_3:21724907-21724926 | None:intergenic | 40.0% | |
GATCGCTTAAGTAAGATCTC+AGG | + | chr2_3:21725128-21725147 | Msa0283960:intron | 40.0% | |
CTCCTTAGCTGTTATCAGTA+TGG | - | chr2_3:21725400-21725419 | None:intergenic | 40.0% | |
!! | CGTTCGAGTTTTGCATGTAA+CGG | + | chr2_3:21725560-21725579 | Msa0283960:CDS | 40.0% |
!! | GTTCGAGTTTTGCATGTAAC+GGG | + | chr2_3:21725561-21725580 | Msa0283960:CDS | 40.0% |
!! | TTCGAGTTTTGCATGTAACG+GGG | + | chr2_3:21725562-21725581 | Msa0283960:CDS | 40.0% |
ATCAGAAGATGAATCCATGG+TGG | + | chr2_3:21725593-21725612 | Msa0283960:CDS | 40.0% | |
GACTTGCAAGTGAACATGAT+GGG | + | chr2_3:21725618-21725637 | Msa0283960:CDS | 40.0% | |
ATCCTTTCTCACACTTGAGA+TGG | + | chr2_3:21726280-21726299 | Msa0283960:intron | 40.0% | |
!! | CTAGGGTGGGAAAGTATTTA+TGG | - | chr2_3:21726504-21726523 | None:intergenic | 40.0% |
AATAAGGCAATTGCTAGGGT+GGG | - | chr2_3:21726517-21726536 | None:intergenic | 40.0% | |
AAATAAGGCAATTGCTAGGG+TGG | - | chr2_3:21726518-21726537 | None:intergenic | 40.0% | |
GGCTGCATAAACTTTATCAC+AGG | + | chr2_3:21726663-21726682 | Msa0283960:intron | 40.0% | |
! | CGACATAATAATGGGGTTCT+AGG | - | chr2_3:21726691-21726710 | None:intergenic | 40.0% |
AGCATGTCTCATTGCAATGT+CGG | + | chr2_3:21727334-21727353 | Msa0283960:intron | 40.0% | |
TCTGCATAAACCACCAAAAC+TGG | - | chr2_3:21727658-21727677 | None:intergenic | 40.0% | |
! | AATTCAGTTCTGACGGCTAC+AGG | - | chr2_3:21723011-21723030 | None:intergenic | 45.0% |
AGTCGTTTGTCCTTCTTGGA+TGG | + | chr2_3:21723229-21723248 | Msa0283960:intron | 45.0% | |
!!! | GTGTTCCTGGACTAGCTTTT+AGG | + | chr2_3:21723674-21723693 | Msa0283960:CDS | 45.0% |
! | GTTTTCATGGGGTGCAACAA+AGG | + | chr2_3:21723969-21723988 | Msa0283960:CDS | 45.0% |
AATTGAGGTGGAGAAGTTCC+AGG | - | chr2_3:21724421-21724440 | None:intergenic | 45.0% | |
GGATCAGGTGAAAATTGAGG+TGG | - | chr2_3:21724433-21724452 | None:intergenic | 45.0% | |
! | GGTTGATGTTGATGAGAAGG+GGG | - | chr2_3:21724622-21724641 | None:intergenic | 45.0% |
!! | GGAGGTTGATGTTGATGAGA+AGG | - | chr2_3:21724625-21724644 | None:intergenic | 45.0% |
CATCCAGAAGCTAGTGCATT+TGG | + | chr2_3:21724661-21724680 | Msa0283960:CDS | 45.0% | |
! | CTTCCAAATGCACTAGCTTC+TGG | - | chr2_3:21724667-21724686 | None:intergenic | 45.0% |
CAGAAGCTAGTGCATTTGGA+AGG | + | chr2_3:21724665-21724684 | Msa0283960:CDS | 45.0% | |
! | GATCTGAGTCTAGTTCCACT+CGG | - | chr2_3:21725112-21725131 | None:intergenic | 45.0% |
AGAAGATGAATCCATGGTGG+TGG | + | chr2_3:21725596-21725615 | Msa0283960:CDS | 45.0% | |
GGACTTGCAAGTGAACATGA+TGG | + | chr2_3:21725617-21725636 | Msa0283960:CDS | 45.0% | |
CTGAGTAATCCTTAGCCTGA+AGG | - | chr2_3:21725775-21725794 | None:intergenic | 45.0% | |
CTTCAGGCTAAGGATTACTC+AGG | + | chr2_3:21725773-21725792 | Msa0283960:CDS | 45.0% | |
CACCATCTCAAGTGTGAGAA+AGG | - | chr2_3:21726285-21726304 | None:intergenic | 45.0% | |
!!! | CTATGCTGACTTGTTTTCGG+TGG | - | chr2_3:21726895-21726914 | None:intergenic | 45.0% |
TGACTTGATACAGTCCCATG+TGG | + | chr2_3:21727730-21727749 | Msa0283960:CDS | 45.0% | |
!! | AAACTATAAAAATTATAAAT+GGG | - | chr2_3:21726139-21726158 | None:intergenic | 5.0% |
!! | AAAACTATAAAAATTATAAA+TGG | - | chr2_3:21726140-21726159 | None:intergenic | 5.0% |
!!! | TTTTTATAGTTTTTTTTTTT+TGG | + | chr2_3:21726147-21726166 | Msa0283960:intron | 5.0% |
!!! | ATTTATATTAATTTTTTTAG+AGG | + | chr2_3:21727213-21727232 | Msa0283960:intron | 5.0% |
! | AGTTCTGACGGCTACAGGAA+GGG | - | chr2_3:21723006-21723025 | None:intergenic | 50.0% |
GTCTCGAACCGAAAACCACA+AGG | - | chr2_3:21723490-21723509 | None:intergenic | 50.0% | |
!! | GTGGTTTTCGGTTCGAGACT+TGG | + | chr2_3:21723491-21723510 | Msa0283960:intron | 50.0% |
TGCGCAGGCGGATATTCAAA+CGG | + | chr2_3:21724243-21724262 | Msa0283960:intron | 50.0% | |
TCACCTGATCCTACCCAACT+TGG | + | chr2_3:21724442-21724461 | Msa0283960:CDS | 50.0% | |
GCAGATAAGTGAATGGGACG+AGG | + | chr2_3:21727673-21727692 | Msa0283960:intron | 50.0% | |
TCTTCTCACTGCTTCCTGGA+AGG | - | chr2_3:21727702-21727721 | None:intergenic | 50.0% | |
! | CAGTTCTGACGGCTACAGGA+AGG | - | chr2_3:21723007-21723026 | None:intergenic | 55.0% |
CCTGCGCAGCCGAAAAAATG+TGG | - | chr2_3:21724231-21724250 | None:intergenic | 55.0% | |
!!! | CCACATTTTTTCGGCTGCGC+AGG | + | chr2_3:21724228-21724247 | Msa0283960:intron | 55.0% |
!!! | CATTTTTTCGGCTGCGCAGG+CGG | + | chr2_3:21724231-21724250 | Msa0283960:intron | 55.0% |
TGAGGTGGAGAAGTTCCAGG+TGG | - | chr2_3:21724418-21724437 | None:intergenic | 55.0% | |
! | CCTCCAAGTTGGGTAGGATC+AGG | - | chr2_3:21724448-21724467 | None:intergenic | 55.0% |
CCTGATCCTACCCAACTTGG+AGG | + | chr2_3:21724445-21724464 | Msa0283960:CDS | 55.0% | |
CACTTGCAAGTCCACCACCA+TGG | - | chr2_3:21725610-21725629 | None:intergenic | 55.0% | |
CCACTCTTCTCACTGCTTCC+TGG | - | chr2_3:21727706-21727725 | None:intergenic | 55.0% | |
CCAGGAAGCAGTGAGAAGAG+TGG | + | chr2_3:21727703-21727722 | Msa0283960:CDS | 55.0% | |
!! | TTTTGCTGGCCTCGTGCGCA+AGG | + | chr2_3:21723436-21723455 | Msa0283960:intron | 60.0% |
TCAGAGTGACCTTGCGCACG+AGG | - | chr2_3:21723448-21723467 | None:intergenic | 60.0% | |
ATGGGACGAGGAAGCCTTCC+AGG | + | chr2_3:21727685-21727704 | Msa0283960:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 21722987 | 21727766 | 21722987 | ID=Msa0283960;Name=Msa0283960 |
chr2_3 | mRNA | 21722987 | 21727766 | 21722987 | ID=Msa0283960-mRNA-1;Parent=Msa0283960;Name=Msa0283960-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.14|0|1|1|1|8|0|531 |
chr2_3 | exon | 21722987 | 21723102 | 21722987 | ID=Msa0283960-mRNA-1:exon:8458;Parent=Msa0283960-mRNA-1 |
chr2_3 | exon | 21723231 | 21723356 | 21723231 | ID=Msa0283960-mRNA-1:exon:8459;Parent=Msa0283960-mRNA-1 |
chr2_3 | exon | 21723672 | 21723777 | 21723672 | ID=Msa0283960-mRNA-1:exon:8460;Parent=Msa0283960-mRNA-1 |
chr2_3 | exon | 21723866 | 21723880 | 21723866 | ID=Msa0283960-mRNA-1:exon:8461;Parent=Msa0283960-mRNA-1 |
chr2_3 | exon | 21723963 | 21724025 | 21723963 | ID=Msa0283960-mRNA-1:exon:8462;Parent=Msa0283960-mRNA-1 |
chr2_3 | exon | 21724250 | 21724918 | 21724250 | ID=Msa0283960-mRNA-1:exon:8463;Parent=Msa0283960-mRNA-1 |
chr2_3 | exon | 21725384 | 21725794 | 21725384 | ID=Msa0283960-mRNA-1:exon:8464;Parent=Msa0283960-mRNA-1 |
chr2_3 | exon | 21727677 | 21727766 | 21727677 | ID=Msa0283960-mRNA-1:exon:8465;Parent=Msa0283960-mRNA-1 |
chr2_3 | CDS | 21722987 | 21723102 | 21722987 | ID=Msa0283960-mRNA-1:cds;Parent=Msa0283960-mRNA-1 |
chr2_3 | CDS | 21723231 | 21723356 | 21723231 | ID=Msa0283960-mRNA-1:cds;Parent=Msa0283960-mRNA-1 |
chr2_3 | CDS | 21723672 | 21723777 | 21723672 | ID=Msa0283960-mRNA-1:cds;Parent=Msa0283960-mRNA-1 |
chr2_3 | CDS | 21723866 | 21723880 | 21723866 | ID=Msa0283960-mRNA-1:cds;Parent=Msa0283960-mRNA-1 |
chr2_3 | CDS | 21723963 | 21724025 | 21723963 | ID=Msa0283960-mRNA-1:cds;Parent=Msa0283960-mRNA-1 |
chr2_3 | CDS | 21724250 | 21724918 | 21724250 | ID=Msa0283960-mRNA-1:cds;Parent=Msa0283960-mRNA-1 |
chr2_3 | CDS | 21725384 | 21725794 | 21725384 | ID=Msa0283960-mRNA-1:cds;Parent=Msa0283960-mRNA-1 |
chr2_3 | CDS | 21727677 | 21727766 | 21727677 | ID=Msa0283960-mRNA-1:cds;Parent=Msa0283960-mRNA-1 |
Gene Sequence |
Protein sequence |