AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0283960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0283960 MtrunA17_Chr2g0299471 95.556 450 17 2 81 530 6 452 0.0 797
Msa0283960 MtrunA17_Chr5g0400661 28.136 295 176 10 247 518 48 329 9.27e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0283960 AT5G56960.2 39.668 542 265 16 12 522 13 523 2.05e-90 287
Msa0283960 AT5G56960.1 35.827 508 240 15 44 522 14 464 1.98e-61 209

Find 92 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATGTATTGATTCGATTAT+TGG 0.081677 2_3:+21725656 Msa0283960:CDS
CTAAAATTTGACCCTATATT+AGG 0.183433 2_3:-21724706 None:intergenic
ATCATGTGAGTCATATATTT+TGG 0.239208 2_3:-21727754 None:intergenic
GATGCTCTCACATTTGTCTT+TGG 0.245611 2_3:+21723057 Msa0283960:CDS
GAATAGTCGTTTGTCCTTCT+TGG 0.247039 2_3:+21723225 Msa0283960:intron
AAATATATACTTTGATAATA+TGG 0.249981 2_3:-21723090 None:intergenic
CAATTACCAAGTTCTTCTTT+AGG 0.263208 2_3:+21723274 Msa0283960:CDS
AATTACCAAGTTCTTCTTTA+GGG 0.266258 2_3:+21723275 Msa0283960:CDS
CCACTCTTCTCACTGCTTCC+TGG 0.304864 2_3:-21727703 None:intergenic
CTTCCAAATGCACTAGCTTC+TGG 0.330949 2_3:-21724664 None:intergenic
TACTTCATCAAATAACCTTC+AGG 0.345353 2_3:+21725757 Msa0283960:CDS
CATGATAAAAGTCCTAATAT+AGG 0.347025 2_3:+21724694 Msa0283960:CDS
CTCCTTAGCTGTTATCAGTA+TGG 0.357487 2_3:-21725397 None:intergenic
AATATGAGAGATGAGTATTC+AGG 0.359714 2_3:-21724382 None:intergenic
GGAGACATTGAAATCTTTGA+TGG 0.361566 2_3:+21725416 Msa0283960:CDS
ATGGGACGAGGAAGCCTTCC+AGG 0.369330 2_3:+21727685 Msa0283960:CDS
CATCCAGAAGCTAGTGCATT+TGG 0.369406 2_3:+21724661 Msa0283960:CDS
ATGATAAAAGTCCTAATATA+GGG 0.380695 2_3:+21724695 Msa0283960:CDS
GGTAGTAGTGTGTTTGAAAC+AGG 0.397618 2_3:-21724490 None:intergenic
TTACTTAGAGCTGCAACAAT+TGG 0.401288 2_3:+21723708 Msa0283960:CDS
TCATTCTCAGTGTGTGTTGT+AGG 0.401735 2_3:-21724559 None:intergenic
ACATGTCAACTTGGTTTCAA+TGG 0.402871 2_3:+21725698 Msa0283960:CDS
ATCAAATAACCTTCAGGCTA+AGG 0.429025 2_3:+21725763 Msa0283960:CDS
AATTCAGTTCTGACGGCTAC+AGG 0.433952 2_3:-21723008 None:intergenic
GAATATTTATTCCTCCAAGT+TGG 0.443689 2_3:-21724456 None:intergenic
GGGGTGTAGATAGAACATTT+TGG 0.464905 2_3:-21724600 None:intergenic
AATATTTATTCCTCCAAGTT+GGG 0.465125 2_3:-21724455 None:intergenic
GGTAATTGTTGAAGTTGAAA+AGG 0.465384 2_3:-21724511 None:intergenic
AATTGTTGCAGCTCTAAGTA+AGG 0.467423 2_3:-21723706 None:intergenic
TCACCTGATCCTACCCAACT+TGG 0.482330 2_3:+21724442 Msa0283960:CDS
CGTTCTCTAATGCAATCTCT+TGG 0.486499 2_3:+21723035 Msa0283960:CDS
AATTGTGTTGGTGTGATTTG+AGG 0.486696 2_3:-21724532 None:intergenic
CCTCCAAGTTGGGTAGGATC+AGG 0.489579 2_3:-21724445 None:intergenic
AGTCGTTTGTCCTTCTTGGA+TGG 0.492248 2_3:+21723229 Msa0283960:intron
GTTGTAGGGAATAATTGTGT+TGG 0.494305 2_3:-21724544 None:intergenic
AACAAAGGAGAAATTGAGCT+TGG 0.495316 2_3:+21723984 Msa0283960:CDS
CATTCTCAGTGTGTGTTGTA+GGG 0.498942 2_3:-21724558 None:intergenic
AATTGAGGTGGAGAAGTTCC+AGG 0.500124 2_3:-21724418 None:intergenic
TCTTCTCACTGCTTCCTGGA+AGG 0.503286 2_3:-21727699 None:intergenic
TTTACAGGAAGCAAGGATCA+AGG 0.513199 2_3:+21723859 Msa0283960:intron
GTGTTTGAAACAGGTCTCAT+TGG 0.519603 2_3:-21724481 None:intergenic
GAGGTTGATGTTGATGAGAA+GGG 0.522446 2_3:-21724621 None:intergenic
AGAGATGAGTATTCAGGAGT+AGG 0.522961 2_3:-21724376 None:intergenic
TGCGCAGGCGGATATTCAAA+CGG 0.526338 2_3:+21724243 Msa0283960:intron
TCAAGATCAACATGTCAACT+TGG 0.527432 2_3:+21725689 Msa0283960:CDS
CTGAGTAATCCTTAGCCTGA+AGG 0.534544 2_3:-21725772 None:intergenic
GGAGGTTGATGTTGATGAGA+AGG 0.546970 2_3:-21724622 None:intergenic
TTTATTCCTCCAAGTTGGGT+AGG 0.547865 2_3:-21724451 None:intergenic
TGATGAAGTAAATCATTCCC+TGG 0.552419 2_3:-21725744 None:intergenic
CCTGATCCTACCCAACTTGG+AGG 0.553608 2_3:+21724445 Msa0283960:CDS
AGAAGATGAATCCATGGTGG+TGG 0.555276 2_3:+21725596 Msa0283960:CDS
GTTTATGCAGATAAGTGAAT+GGG 0.559981 2_3:+21727667 Msa0283960:intron
TTCCATACTGATAACAGCTA+AGG 0.563069 2_3:+21725395 Msa0283960:CDS
AGGTTGATGTTGATGAGAAG+GGG 0.567417 2_3:-21724620 None:intergenic
TTTGAAACAGGTCTCATTGG+TGG 0.575275 2_3:-21724478 None:intergenic
TTCATCAGAAGATGAATCCA+TGG 0.575458 2_3:+21725590 Msa0283960:CDS
ACACTCCCTAAAGAAGAACT+TGG 0.577549 2_3:-21723280 None:intergenic
ACAAATACAAATCATGCACC+AGG 0.579495 2_3:+21725726 Msa0283960:CDS
ATGAGATCACTATCAACAGC+AGG 0.579733 2_3:+21724349 Msa0283960:CDS
CTTAGAGCATTACTTCCTCA+AGG 0.580881 2_3:+21724889 Msa0283960:CDS
GGTTTATGCAGATAAGTGAA+TGG 0.584114 2_3:+21727666 Msa0283960:intron
CAGTTCTGACGGCTACAGGA+AGG 0.586512 2_3:-21723004 None:intergenic
CTTCAGGCTAAGGATTACTC+AGG 0.589180 2_3:+21725773 Msa0283960:CDS
ATGATGAAGTTGATTACTCG+AGG 0.589833 2_3:-21724815 None:intergenic
CAAGAGATTGCATTAGAGAA+CGG 0.600137 2_3:-21723034 None:intergenic
AGTTCTGACGGCTACAGGAA+GGG 0.603804 2_3:-21723003 None:intergenic
TTACGTACCTTTGTTCCTTG+AGG 0.605079 2_3:-21724904 None:intergenic
ACGGATAAATTCAGTTCTGA+CGG 0.607682 2_3:-21723015 None:intergenic
ATTGTAGAAACCATCCAAGA+AGG 0.610273 2_3:-21723239 None:intergenic
ATTGAAGATGAAGATGATGA+AGG 0.610501 2_3:-21724328 None:intergenic
GTAGGATCAGGTGAAAATTG+AGG 0.615518 2_3:-21724433 None:intergenic
GGTTGATGTTGATGAGAAGG+GGG 0.616407 2_3:-21724619 None:intergenic
TGATTCCTAAAAGCTAGTCC+AGG 0.617478 2_3:-21723679 None:intergenic
CCTATAACCACATATATGGA+AGG 0.620515 2_3:+21722972 None:intergenic
TGATGAAGTTGATTACTCGA+GGG 0.623889 2_3:-21724814 None:intergenic
ATTACTTCCTCAAGGAACAA+AGG 0.632442 2_3:+21724897 Msa0283960:CDS
CAGAAGCTAGTGCATTTGGA+AGG 0.633413 2_3:+21724665 Msa0283960:CDS
GCAGATAAGTGAATGGGACG+AGG 0.636589 2_3:+21727673 Msa0283960:intron
GGATCAGGTGAAAATTGAGG+TGG 0.639584 2_3:-21724430 None:intergenic
TAAAAGCTAGTCCAGGAACA+CGG 0.640221 2_3:-21723672 None:intergenic
ATATTCAACATAAATCCACC+TGG 0.642233 2_3:+21724400 Msa0283960:CDS
GATGAAGTTGATTACTCGAG+GGG 0.643129 2_3:-21724813 None:intergenic
CACTTGCAAGTCCACCACCA+TGG 0.644380 2_3:-21725607 None:intergenic
CCAGGAAGCAGTGAGAAGAG+TGG 0.648622 2_3:+21727703 Msa0283960:CDS
GACTTGCAAGTGAACATGAT+GGG 0.650809 2_3:+21725618 Msa0283960:CDS
GAAGATGAAGATGATGAAGG+TGG 0.654902 2_3:-21724325 None:intergenic
AATACAGACACAATTCTACC+AGG 0.662180 2_3:+21723756 Msa0283960:CDS
GGACTTGCAAGTGAACATGA+TGG 0.678801 2_3:+21725617 Msa0283960:CDS
TGAGGTGGAGAAGTTCCAGG+TGG 0.714377 2_3:-21724415 None:intergenic
CAAATACAAATCATGCACCA+GGG 0.722090 2_3:+21725727 Msa0283960:CDS
ATCAGAAGATGAATCCATGG+TGG 0.734427 2_3:+21725593 Msa0283960:CDS
TGACTTGATACAGTCCCATG+TGG 0.800087 2_3:+21727730 Msa0283960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTAAATTTTAATATTTA+TGG + chr2_3:21726059-21726078 Msa0283960:intron 0.0%
!!! AAATATATACTTTGATAATA+TGG - chr2_3:21723093-21723112 None:intergenic 10.0%
!! AAAGTTTATTGTAATTAAAT+TGG + chr2_3:21723376-21723395 Msa0283960:intron 10.0%
!!! TATTTTTTTATTTACATCAT+TGG - chr2_3:21725156-21725175 None:intergenic 10.0%
!! AAATAAAAAAATAAAATACG+CGG + chr2_3:21725163-21725182 Msa0283960:intron 10.0%
!!! AAAATTTAATTTATACATGA+AGG - chr2_3:21726051-21726070 None:intergenic 10.0%
!!! ATTTTCAAATTTTTCAAAAA+TGG + chr2_3:21726553-21726572 Msa0283960:intron 10.0%
!!! ACTTTTTATAATAGAATTTA+TGG - chr2_3:21726929-21726948 None:intergenic 10.0%
!!! AGTTTAGAATATAATAATGT+AGG - chr2_3:21723136-21723155 None:intergenic 15.0%
!! AATATTGTTTCGTTAAAAAT+TGG + chr2_3:21724078-21724097 Msa0283960:intron 15.0%
!! ATATTGTTTCGTTAAAAATT+GGG + chr2_3:21724079-21724098 Msa0283960:intron 15.0%
!! TGATTATAAAACAATATGAT+GGG - chr2_3:21724938-21724957 None:intergenic 15.0%
!! TTGATTATAAAACAATATGA+TGG - chr2_3:21724939-21724958 None:intergenic 15.0%
!! ATTAATTCGTGAAATAATTA+AGG + chr2_3:21725833-21725852 Msa0283960:intron 15.0%
!! TTAATTCGTGAAATAATTAA+GGG + chr2_3:21725834-21725853 Msa0283960:intron 15.0%
!!! TGTTTTTTTTTTTTTTTGAC+AGG + chr2_3:21725894-21725913 Msa0283960:intron 15.0%
!!! GTTTTTTTTTTTTTTTGACA+GGG + chr2_3:21725895-21725914 Msa0283960:intron 15.0%
!!! ATTGGTTTATGTATAAAAAT+TGG - chr2_3:21727446-21727465 None:intergenic 15.0%
!! TAGAATATAATAATGTAGGT+AGG - chr2_3:21723132-21723151 None:intergenic 20.0%
!!! TACAACTTGGTTTTTTTTTT+TGG + chr2_3:21723203-21723222 Msa0283960:intron 20.0%
!!! AATTCTTCTTTTTTTTTTGC+TGG + chr2_3:21723422-21723441 Msa0283960:intron 20.0%
!!! AGTATAGCAATAATTTTCTT+AGG - chr2_3:21723796-21723815 None:intergenic 20.0%
!! TGCTATACTTGTATATATTA+AGG + chr2_3:21723807-21723826 Msa0283960:intron 20.0%
!! ACATATAATGTAAATGTTGT+CGG + chr2_3:21724053-21724072 Msa0283960:intron 20.0%
!! TATTGTTTCGTTAAAAATTG+GGG + chr2_3:21724080-21724099 Msa0283960:intron 20.0%
!!! TTGATTTAACCACATTTTTT+CGG + chr2_3:21724219-21724238 Msa0283960:intron 20.0%
!! ATGATAAAAGTCCTAATATA+GGG + chr2_3:21724695-21724714 Msa0283960:CDS 20.0%
!! TAATCTATACTCTACAAAAT+AGG - chr2_3:21725205-21725224 None:intergenic 20.0%
!!! ATCTAGAATAATGATATGAT+CGG - chr2_3:21726378-21726397 None:intergenic 20.0%
!!! TTCAAATTTTTCAAAAATGG+TGG + chr2_3:21726556-21726575 Msa0283960:intron 20.0%
!!! ATTTTCATCGACATAATAAT+GGG - chr2_3:21726699-21726718 None:intergenic 20.0%
!!! AATTTTCATCGACATAATAA+TGG - chr2_3:21726700-21726719 None:intergenic 20.0%
!! AGTATACAACTTCAAATATA+TGG + chr2_3:21726729-21726748 Msa0283960:intron 20.0%
!! ACTTCAAATATATGGTTAAA+AGG + chr2_3:21726737-21726756 Msa0283960:intron 20.0%
!!! TGATAAAGTGAATTCTATTT+TGG + chr2_3:21726866-21726885 Msa0283960:intron 20.0%
!!! TGGATTATTTGTTATATAGT+AGG - chr2_3:21727133-21727152 None:intergenic 20.0%
!! TTTCTCGAAAACAATATATA+TGG - chr2_3:21727153-21727172 None:intergenic 20.0%
!!! AGCATATCTCATTTTTTTTA+AGG + chr2_3:21727305-21727324 Msa0283960:intron 20.0%
!!! ATTTTGTGGTATGTATTATA+GGG - chr2_3:21727583-21727602 None:intergenic 20.0%
!!! AAAGATGGAAACTAATTTTA+TGG + chr2_3:21727621-21727640 Msa0283960:intron 20.0%
! ATATAATAATGTAGGTAGGT+AGG - chr2_3:21723128-21723147 None:intergenic 25.0%
! AATTACCAAGTTCTTCTTTA+GGG + chr2_3:21723275-21723294 Msa0283960:CDS 25.0%
!! AACAGCTTTTTAATCAATAC+AGG + chr2_3:21723308-21723327 Msa0283960:CDS 25.0%
!!! TAGCATGTTTTTGTTTTTAC+AGG + chr2_3:21723844-21723863 Msa0283960:intron 25.0%
!! ATAGAGAATTTTCAGTTTCT+TGG - chr2_3:21723897-21723916 None:intergenic 25.0%
! AATTTGAACTTTATTCTCTG+AGG + chr2_3:21724156-21724175 Msa0283960:intron 25.0%
! AATATTTATTCCTCCAAGTT+GGG - chr2_3:21724458-21724477 None:intergenic 25.0%
! CATGATAAAAGTCCTAATAT+AGG + chr2_3:21724694-21724713 Msa0283960:CDS 25.0%
! CTAAAATTTGACCCTATATT+AGG - chr2_3:21724709-21724728 None:intergenic 25.0%
! ATGCATAATTATGTACCATA+AGG + chr2_3:21724958-21724977 Msa0283960:intron 25.0%
! TTCAAAAACATTGTTCCTTA+TGG - chr2_3:21724976-21724995 None:intergenic 25.0%
! AGAGACATTAAAAATCTTGA+CGG - chr2_3:21725019-21725038 None:intergenic 25.0%
! AATCGTTTGCAAGAAAAAAT+TGG - chr2_3:21725062-21725081 None:intergenic 25.0%
!!! CTAACATTCATGTTTTTTGT+CGG - chr2_3:21725295-21725314 None:intergenic 25.0%
!!! TGATGTATTGATTCGATTAT+TGG + chr2_3:21725656-21725675 Msa0283960:CDS 25.0%
!!! GTCTCTAAACTTTTAGTTAA+AGG + chr2_3:21726412-21726431 Msa0283960:intron 25.0%
!! AAAGTATTTATGGTTTATCG+TGG - chr2_3:21726494-21726513 None:intergenic 25.0%
!!! ATTGCCTTATTTACATAAGT+CGG + chr2_3:21726526-21726545 Msa0283960:intron 25.0%
!!! ATTACCGACTTATGTAAATA+AGG - chr2_3:21726533-21726552 None:intergenic 25.0%
!! AATTGATAACTCAGACAATT+AGG + chr2_3:21726624-21726643 Msa0283960:intron 25.0%
!!! CAATTAGGTTTTGAAAATAG+TGG + chr2_3:21726639-21726658 Msa0283960:intron 25.0%
!! TTTTCATCGACATAATAATG+GGG - chr2_3:21726698-21726717 None:intergenic 25.0%
! CAAATATATGGTTAAAAGGA+AGG + chr2_3:21726741-21726760 Msa0283960:intron 25.0%
!! TATATGACTTGTGTAATCTT+TGG - chr2_3:21726840-21726859 None:intergenic 25.0%
! TTATATTCATTGTGAGTGTA+TGG + chr2_3:21727243-21727262 Msa0283960:intron 25.0%
! AAAGAGTTCAATACTTCAAT+TGG - chr2_3:21727464-21727483 None:intergenic 25.0%
!! GATTTTGTGGTATGTATTAT+AGG - chr2_3:21727584-21727603 None:intergenic 25.0%
TTGATTGTGCTTATACAACT+TGG + chr2_3:21723190-21723209 Msa0283960:intron 30.0%
CAATTACCAAGTTCTTCTTT+AGG + chr2_3:21723274-21723293 Msa0283960:CDS 30.0%
ATATTAAGGCTATGTTGCTA+AGG + chr2_3:21723821-21723840 Msa0283960:intron 30.0%
!!! TTTTGTTTTTACAGGAAGCA+AGG + chr2_3:21723852-21723871 Msa0283960:intron 30.0%
!!! TTTTCAGACTGTTGTTTTCA+TGG + chr2_3:21723956-21723975 Msa0283960:intron 30.0%
!!! TTTCAGACTGTTGTTTTCAT+GGG + chr2_3:21723957-21723976 Msa0283960:intron 30.0%
TATTAGAAGCGAGAATTTAC+GGG - chr2_3:21724115-21724134 None:intergenic 30.0%
CTATTAGAAGCGAGAATTTA+CGG - chr2_3:21724116-21724135 None:intergenic 30.0%
! ATAGTCTTTTTACAACTCCA+AGG + chr2_3:21724132-21724151 Msa0283960:intron 30.0%
! TAGTCTTTTTACAACTCCAA+GGG + chr2_3:21724133-21724152 Msa0283960:intron 30.0%
GAATAAAGTTCAAATTCCCT+TGG - chr2_3:21724152-21724171 None:intergenic 30.0%
ATTGAAGATGAAGATGATGA+AGG - chr2_3:21724331-21724350 None:intergenic 30.0%
AATATGAGAGATGAGTATTC+AGG - chr2_3:21724385-21724404 None:intergenic 30.0%
ATATTCAACATAAATCCACC+TGG + chr2_3:21724400-21724419 Msa0283960:CDS 30.0%
GAATATTTATTCCTCCAAGT+TGG - chr2_3:21724459-21724478 None:intergenic 30.0%
GGTAATTGTTGAAGTTGAAA+AGG - chr2_3:21724514-21724533 None:intergenic 30.0%
TCTATACTCTACAAAATAGG+TGG - chr2_3:21725202-21725221 None:intergenic 30.0%
TACTTCATCAAATAACCTTC+AGG + chr2_3:21725757-21725776 Msa0283960:CDS 30.0%
!! TTTTTGGTAAGCAAAATGCT+AGG + chr2_3:21726163-21726182 Msa0283960:intron 30.0%
TGTAAATAAGGCAATTGCTA+GGG - chr2_3:21726521-21726540 None:intergenic 30.0%
ATGTAAATAAGGCAATTGCT+AGG - chr2_3:21726522-21726541 None:intergenic 30.0%
!!! TTAGGTTTTGAAAATAGTGG+CGG + chr2_3:21726642-21726661 Msa0283960:intron 30.0%
! GTGCTTGAAATATACTGATT+AGG + chr2_3:21726786-21726805 Msa0283960:intron 30.0%
! AATATACTGATTAGGTCGAT+TGG + chr2_3:21726794-21726813 Msa0283960:intron 30.0%
!!! TATCTATGCTGACTTGTTTT+CGG - chr2_3:21726898-21726917 None:intergenic 30.0%
AAGAAAGAGTAGTAAACTTG+TGG + chr2_3:21726962-21726981 Msa0283960:intron 30.0%
TAGTCTGTCAAATGTCAATT+TGG + chr2_3:21727074-21727093 Msa0283960:intron 30.0%
TTGTTATATAGTAGGTCGTT+TGG - chr2_3:21727125-21727144 None:intergenic 30.0%
! TTGATCAATGATGATGACAA+AGG - chr2_3:21727535-21727554 None:intergenic 30.0%
CATACCACAAAATCTTCATT+AGG + chr2_3:21727590-21727609 Msa0283960:intron 30.0%
! GGAAGAATATTAACCAGTTT+TGG + chr2_3:21727642-21727661 Msa0283960:intron 30.0%
!! AGAATATTAACCAGTTTTGG+TGG + chr2_3:21727645-21727664 Msa0283960:intron 30.0%
GTTTATGCAGATAAGTGAAT+GGG + chr2_3:21727667-21727686 Msa0283960:intron 30.0%
!!! TCATATATTTTGGTCCACAT+GGG - chr2_3:21727747-21727766 None:intergenic 30.0%
! ACGGATAAATTCAGTTCTGA+CGG - chr2_3:21723018-21723037 None:intergenic 35.0%
CAAGAGATTGCATTAGAGAA+CGG - chr2_3:21723037-21723056 None:intergenic 35.0%
AGCACAATCAACAACTACTA+TGG - chr2_3:21723181-21723200 None:intergenic 35.0%
ATTGTAGAAACCATCCAAGA+AGG - chr2_3:21723242-21723261 None:intergenic 35.0%
!!! TTTTTTTTTAGCCGTGTTCC+TGG + chr2_3:21723661-21723680 Msa0283960:intron 35.0%
!! AATTGTTGCAGCTCTAAGTA+AGG - chr2_3:21723709-21723728 None:intergenic 35.0%
TTACTTAGAGCTGCAACAAT+TGG + chr2_3:21723708-21723727 Msa0283960:CDS 35.0%
AATACAGACACAATTCTACC+AGG + chr2_3:21723756-21723775 Msa0283960:CDS 35.0%
!!! TTCAGACTGTTGTTTTCATG+GGG + chr2_3:21723958-21723977 Msa0283960:intron 35.0%
AACAAAGGAGAAATTGAGCT+TGG + chr2_3:21723984-21724003 Msa0283960:CDS 35.0%
GTCTGTCTTGAAAAATCTTC+AGG - chr2_3:21724286-21724305 None:intergenic 35.0%
! AATTGTGTTGGTGTGATTTG+AGG - chr2_3:21724535-21724554 None:intergenic 35.0%
GTTGTAGGGAATAATTGTGT+TGG - chr2_3:21724547-21724566 None:intergenic 35.0%
! GGATGTGTCACATAATTTTG+CGG - chr2_3:21724646-21724665 None:intergenic 35.0%
! TGATGAAGTTGATTACTCGA+GGG - chr2_3:21724817-21724836 None:intergenic 35.0%
! ATGATGAAGTTGATTACTCG+AGG - chr2_3:21724818-21724837 None:intergenic 35.0%
ATTACTTCCTCAAGGAACAA+AGG + chr2_3:21724897-21724916 Msa0283960:CDS 35.0%
AAACATTATGTTGATCCGAG+TGG + chr2_3:21725094-21725113 Msa0283960:intron 35.0%
TTCCATACTGATAACAGCTA+AGG + chr2_3:21725395-21725414 Msa0283960:CDS 35.0%
GGAGACATTGAAATCTTTGA+TGG + chr2_3:21725416-21725435 Msa0283960:CDS 35.0%
TTCATCAGAAGATGAATCCA+TGG + chr2_3:21725590-21725609 Msa0283960:CDS 35.0%
TCAAGATCAACATGTCAACT+TGG + chr2_3:21725689-21725708 Msa0283960:CDS 35.0%
ACATGTCAACTTGGTTTCAA+TGG + chr2_3:21725698-21725717 Msa0283960:CDS 35.0%
ACAAATACAAATCATGCACC+AGG + chr2_3:21725726-21725745 Msa0283960:CDS 35.0%
CAAATACAAATCATGCACCA+GGG + chr2_3:21725727-21725746 Msa0283960:CDS 35.0%
TGATGAAGTAAATCATTCCC+TGG - chr2_3:21725747-21725766 None:intergenic 35.0%
ATCAAATAACCTTCAGGCTA+AGG + chr2_3:21725763-21725782 Msa0283960:CDS 35.0%
!!! AACGGTTTTTAGAATGACAC+TGG - chr2_3:21726207-21726226 None:intergenic 35.0%
!!! GTCGTTGTTAGAGTTTTGAA+CGG - chr2_3:21726225-21726244 None:intergenic 35.0%
! TGACTTGTGTAATCTTTGGA+TGG - chr2_3:21726836-21726855 None:intergenic 35.0%
CTACTCTTTCTTAACGATTG+AGG - chr2_3:21726954-21726973 None:intergenic 35.0%
TTATATAGTAGGTCGTTTGG+TGG - chr2_3:21727122-21727141 None:intergenic 35.0%
! CTCACCTAATGAAGATTTTG+TGG - chr2_3:21727597-21727616 None:intergenic 35.0%
CACAAAATCTTCATTAGGTG+AGG + chr2_3:21727595-21727614 Msa0283960:intron 35.0%
CATTAGGTGAGGAAAAAAGA+TGG + chr2_3:21727606-21727625 Msa0283960:intron 35.0%
GGTTTATGCAGATAAGTGAA+TGG + chr2_3:21727666-21727685 Msa0283960:intron 35.0%
CGTTCTCTAATGCAATCTCT+TGG + chr2_3:21723035-21723054 Msa0283960:CDS 40.0%
GATGCTCTCACATTTGTCTT+TGG + chr2_3:21723057-21723076 Msa0283960:CDS 40.0%
GAATAGTCGTTTGTCCTTCT+TGG + chr2_3:21723225-21723244 Msa0283960:intron 40.0%
ACACTCCCTAAAGAAGAACT+TGG - chr2_3:21723283-21723302 None:intergenic 40.0%
AGATTCACTCTTCAACCTTG+TGG + chr2_3:21723472-21723491 Msa0283960:intron 40.0%
! CTCTTCAACCTTGTGGTTTT+CGG + chr2_3:21723479-21723498 Msa0283960:intron 40.0%
GTAAAGATCTCGTGCTCTAA+CGG - chr2_3:21723598-21723617 None:intergenic 40.0%
TAAAAGCTAGTCCAGGAACA+CGG - chr2_3:21723675-21723694 None:intergenic 40.0%
TGATTCCTAAAAGCTAGTCC+AGG - chr2_3:21723682-21723701 None:intergenic 40.0%
TAGGACAACAAGTACTAACC+TGG - chr2_3:21723777-21723796 None:intergenic 40.0%
TTTACAGGAAGCAAGGATCA+AGG + chr2_3:21723859-21723878 Msa0283960:intron 40.0%
GAAGATGAAGATGATGAAGG+TGG - chr2_3:21724328-21724347 None:intergenic 40.0%
ATGAGATCACTATCAACAGC+AGG + chr2_3:21724349-21724368 Msa0283960:CDS 40.0%
AGAGATGAGTATTCAGGAGT+AGG - chr2_3:21724379-21724398 None:intergenic 40.0%
GTAGGATCAGGTGAAAATTG+AGG - chr2_3:21724436-21724455 None:intergenic 40.0%
! TTTATTCCTCCAAGTTGGGT+AGG - chr2_3:21724454-21724473 None:intergenic 40.0%
! TTTGAAACAGGTCTCATTGG+TGG - chr2_3:21724481-21724500 None:intergenic 40.0%
! GTGTTTGAAACAGGTCTCAT+TGG - chr2_3:21724484-21724503 None:intergenic 40.0%
! GGTAGTAGTGTGTTTGAAAC+AGG - chr2_3:21724493-21724512 None:intergenic 40.0%
CATTCTCAGTGTGTGTTGTA+GGG - chr2_3:21724561-21724580 None:intergenic 40.0%
TCATTCTCAGTGTGTGTTGT+AGG - chr2_3:21724562-21724581 None:intergenic 40.0%
! GGGGTGTAGATAGAACATTT+TGG - chr2_3:21724603-21724622 None:intergenic 40.0%
!! AGGTTGATGTTGATGAGAAG+GGG - chr2_3:21724623-21724642 None:intergenic 40.0%
!! GAGGTTGATGTTGATGAGAA+GGG - chr2_3:21724624-21724643 None:intergenic 40.0%
! TGTGTCACATAATTTTGCGG+AGG - chr2_3:21724643-21724662 None:intergenic 40.0%
! GATGAAGTTGATTACTCGAG+GGG - chr2_3:21724816-21724835 None:intergenic 40.0%
! CTTAGAGCATTACTTCCTCA+AGG + chr2_3:21724889-21724908 Msa0283960:CDS 40.0%
TTACGTACCTTTGTTCCTTG+AGG - chr2_3:21724907-21724926 None:intergenic 40.0%
GATCGCTTAAGTAAGATCTC+AGG + chr2_3:21725128-21725147 Msa0283960:intron 40.0%
CTCCTTAGCTGTTATCAGTA+TGG - chr2_3:21725400-21725419 None:intergenic 40.0%
!! CGTTCGAGTTTTGCATGTAA+CGG + chr2_3:21725560-21725579 Msa0283960:CDS 40.0%
!! GTTCGAGTTTTGCATGTAAC+GGG + chr2_3:21725561-21725580 Msa0283960:CDS 40.0%
!! TTCGAGTTTTGCATGTAACG+GGG + chr2_3:21725562-21725581 Msa0283960:CDS 40.0%
ATCAGAAGATGAATCCATGG+TGG + chr2_3:21725593-21725612 Msa0283960:CDS 40.0%
GACTTGCAAGTGAACATGAT+GGG + chr2_3:21725618-21725637 Msa0283960:CDS 40.0%
ATCCTTTCTCACACTTGAGA+TGG + chr2_3:21726280-21726299 Msa0283960:intron 40.0%
!! CTAGGGTGGGAAAGTATTTA+TGG - chr2_3:21726504-21726523 None:intergenic 40.0%
AATAAGGCAATTGCTAGGGT+GGG - chr2_3:21726517-21726536 None:intergenic 40.0%
AAATAAGGCAATTGCTAGGG+TGG - chr2_3:21726518-21726537 None:intergenic 40.0%
GGCTGCATAAACTTTATCAC+AGG + chr2_3:21726663-21726682 Msa0283960:intron 40.0%
! CGACATAATAATGGGGTTCT+AGG - chr2_3:21726691-21726710 None:intergenic 40.0%
AGCATGTCTCATTGCAATGT+CGG + chr2_3:21727334-21727353 Msa0283960:intron 40.0%
TCTGCATAAACCACCAAAAC+TGG - chr2_3:21727658-21727677 None:intergenic 40.0%
! AATTCAGTTCTGACGGCTAC+AGG - chr2_3:21723011-21723030 None:intergenic 45.0%
AGTCGTTTGTCCTTCTTGGA+TGG + chr2_3:21723229-21723248 Msa0283960:intron 45.0%
!!! GTGTTCCTGGACTAGCTTTT+AGG + chr2_3:21723674-21723693 Msa0283960:CDS 45.0%
! GTTTTCATGGGGTGCAACAA+AGG + chr2_3:21723969-21723988 Msa0283960:CDS 45.0%
AATTGAGGTGGAGAAGTTCC+AGG - chr2_3:21724421-21724440 None:intergenic 45.0%
GGATCAGGTGAAAATTGAGG+TGG - chr2_3:21724433-21724452 None:intergenic 45.0%
! GGTTGATGTTGATGAGAAGG+GGG - chr2_3:21724622-21724641 None:intergenic 45.0%
!! GGAGGTTGATGTTGATGAGA+AGG - chr2_3:21724625-21724644 None:intergenic 45.0%
CATCCAGAAGCTAGTGCATT+TGG + chr2_3:21724661-21724680 Msa0283960:CDS 45.0%
! CTTCCAAATGCACTAGCTTC+TGG - chr2_3:21724667-21724686 None:intergenic 45.0%
CAGAAGCTAGTGCATTTGGA+AGG + chr2_3:21724665-21724684 Msa0283960:CDS 45.0%
! GATCTGAGTCTAGTTCCACT+CGG - chr2_3:21725112-21725131 None:intergenic 45.0%
AGAAGATGAATCCATGGTGG+TGG + chr2_3:21725596-21725615 Msa0283960:CDS 45.0%
GGACTTGCAAGTGAACATGA+TGG + chr2_3:21725617-21725636 Msa0283960:CDS 45.0%
CTGAGTAATCCTTAGCCTGA+AGG - chr2_3:21725775-21725794 None:intergenic 45.0%
CTTCAGGCTAAGGATTACTC+AGG + chr2_3:21725773-21725792 Msa0283960:CDS 45.0%
CACCATCTCAAGTGTGAGAA+AGG - chr2_3:21726285-21726304 None:intergenic 45.0%
!!! CTATGCTGACTTGTTTTCGG+TGG - chr2_3:21726895-21726914 None:intergenic 45.0%
TGACTTGATACAGTCCCATG+TGG + chr2_3:21727730-21727749 Msa0283960:CDS 45.0%
!! AAACTATAAAAATTATAAAT+GGG - chr2_3:21726139-21726158 None:intergenic 5.0%
!! AAAACTATAAAAATTATAAA+TGG - chr2_3:21726140-21726159 None:intergenic 5.0%
!!! TTTTTATAGTTTTTTTTTTT+TGG + chr2_3:21726147-21726166 Msa0283960:intron 5.0%
!!! ATTTATATTAATTTTTTTAG+AGG + chr2_3:21727213-21727232 Msa0283960:intron 5.0%
! AGTTCTGACGGCTACAGGAA+GGG - chr2_3:21723006-21723025 None:intergenic 50.0%
GTCTCGAACCGAAAACCACA+AGG - chr2_3:21723490-21723509 None:intergenic 50.0%
!! GTGGTTTTCGGTTCGAGACT+TGG + chr2_3:21723491-21723510 Msa0283960:intron 50.0%
TGCGCAGGCGGATATTCAAA+CGG + chr2_3:21724243-21724262 Msa0283960:intron 50.0%
TCACCTGATCCTACCCAACT+TGG + chr2_3:21724442-21724461 Msa0283960:CDS 50.0%
GCAGATAAGTGAATGGGACG+AGG + chr2_3:21727673-21727692 Msa0283960:intron 50.0%
TCTTCTCACTGCTTCCTGGA+AGG - chr2_3:21727702-21727721 None:intergenic 50.0%
! CAGTTCTGACGGCTACAGGA+AGG - chr2_3:21723007-21723026 None:intergenic 55.0%
CCTGCGCAGCCGAAAAAATG+TGG - chr2_3:21724231-21724250 None:intergenic 55.0%
!!! CCACATTTTTTCGGCTGCGC+AGG + chr2_3:21724228-21724247 Msa0283960:intron 55.0%
!!! CATTTTTTCGGCTGCGCAGG+CGG + chr2_3:21724231-21724250 Msa0283960:intron 55.0%
TGAGGTGGAGAAGTTCCAGG+TGG - chr2_3:21724418-21724437 None:intergenic 55.0%
! CCTCCAAGTTGGGTAGGATC+AGG - chr2_3:21724448-21724467 None:intergenic 55.0%
CCTGATCCTACCCAACTTGG+AGG + chr2_3:21724445-21724464 Msa0283960:CDS 55.0%
CACTTGCAAGTCCACCACCA+TGG - chr2_3:21725610-21725629 None:intergenic 55.0%
CCACTCTTCTCACTGCTTCC+TGG - chr2_3:21727706-21727725 None:intergenic 55.0%
CCAGGAAGCAGTGAGAAGAG+TGG + chr2_3:21727703-21727722 Msa0283960:CDS 55.0%
!! TTTTGCTGGCCTCGTGCGCA+AGG + chr2_3:21723436-21723455 Msa0283960:intron 60.0%
TCAGAGTGACCTTGCGCACG+AGG - chr2_3:21723448-21723467 None:intergenic 60.0%
ATGGGACGAGGAAGCCTTCC+AGG + chr2_3:21727685-21727704 Msa0283960:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 21722987 21727766 21722987 ID=Msa0283960;Name=Msa0283960
chr2_3 mRNA 21722987 21727766 21722987 ID=Msa0283960-mRNA-1;Parent=Msa0283960;Name=Msa0283960-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.14|0|1|1|1|8|0|531
chr2_3 exon 21722987 21723102 21722987 ID=Msa0283960-mRNA-1:exon:8458;Parent=Msa0283960-mRNA-1
chr2_3 exon 21723231 21723356 21723231 ID=Msa0283960-mRNA-1:exon:8459;Parent=Msa0283960-mRNA-1
chr2_3 exon 21723672 21723777 21723672 ID=Msa0283960-mRNA-1:exon:8460;Parent=Msa0283960-mRNA-1
chr2_3 exon 21723866 21723880 21723866 ID=Msa0283960-mRNA-1:exon:8461;Parent=Msa0283960-mRNA-1
chr2_3 exon 21723963 21724025 21723963 ID=Msa0283960-mRNA-1:exon:8462;Parent=Msa0283960-mRNA-1
chr2_3 exon 21724250 21724918 21724250 ID=Msa0283960-mRNA-1:exon:8463;Parent=Msa0283960-mRNA-1
chr2_3 exon 21725384 21725794 21725384 ID=Msa0283960-mRNA-1:exon:8464;Parent=Msa0283960-mRNA-1
chr2_3 exon 21727677 21727766 21727677 ID=Msa0283960-mRNA-1:exon:8465;Parent=Msa0283960-mRNA-1
chr2_3 CDS 21722987 21723102 21722987 ID=Msa0283960-mRNA-1:cds;Parent=Msa0283960-mRNA-1
chr2_3 CDS 21723231 21723356 21723231 ID=Msa0283960-mRNA-1:cds;Parent=Msa0283960-mRNA-1
chr2_3 CDS 21723672 21723777 21723672 ID=Msa0283960-mRNA-1:cds;Parent=Msa0283960-mRNA-1
chr2_3 CDS 21723866 21723880 21723866 ID=Msa0283960-mRNA-1:cds;Parent=Msa0283960-mRNA-1
chr2_3 CDS 21723963 21724025 21723963 ID=Msa0283960-mRNA-1:cds;Parent=Msa0283960-mRNA-1
chr2_3 CDS 21724250 21724918 21724250 ID=Msa0283960-mRNA-1:cds;Parent=Msa0283960-mRNA-1
chr2_3 CDS 21725384 21725794 21725384 ID=Msa0283960-mRNA-1:cds;Parent=Msa0283960-mRNA-1
chr2_3 CDS 21727677 21727766 21727677 ID=Msa0283960-mRNA-1:cds;Parent=Msa0283960-mRNA-1
Gene Sequence

>Msa0283960

ATGGAAGGTGTCTTTTCCCTTCCTGTAGCCGTCAGAACTGAATTTATCCGTTCTCTAATGCAATCTCTTGGATGCTCTCACATTTGTCTTTGGTCATATGATACCATATTATCAAATCGTTTGTCCTTCTTGGATGGTTTCTACAATGTGATAAACGATCAATTACCAAGTTCTTCTTTAGGGAGTGTAGCACAACAGCTTTTTAATCAATACAGGATTTTATCATTTGATGTCAATGATGACCGTGTTCCTGGACTAGCTTTTAGGAATCAACGTCCTTACTTAGAGCTGCAACAATTGGAACTTCTTACACTGTCATCAACAGAAATACAGACACAATTCTACCAGGAAGCAAGGATCAAGACTGTTGTTTTCATGGGGTGCAACAAAGGAGAAATTGAGCTTGGTTTCTTAAATATGTCTCAAGCGGATATTCAAACGGCACTTAGCAGTCTATTTCCTGAAGATTTTTCAAGACAGACGCAACAAATTAATCAAAATCCACCTTCATCATCTTCATCTTCAATGAGATCACTATCAACAGCAGGTAGTCCTACTCCTGAATACTCATCTCTCATATTCAACATAAATCCACCTGGAACTTCTCCACCTCAATTTTCACCTGATCCTACCCAACTTGGAGGAATAAATATTCCACCAATGAGACCTGTTTCAAACACACTACTACCTTTTCAACTTCAACAATTACCTCAAATCACACCAACACAATTATTCCCTACAACACACACTGAGAATGATGTGATAATGAGAGCAATCCAAAATGTTCTATCTACACCCCCTTCTCATCAACATCAACCTCCGCAAAATTATGTGACACATCCAGAAGCTAGTGCATTTGGAAGGTATAGACATGATAAAAGTCCTAATATAGGGTCAAATTTTAGAAGACAAAGTTTGATGAAGAGATCATTTGCATTCTTTAGAAGCTTGAATTTGATGAGAATGAGAGATCGAAATCAAGCTGCGCGCCCCTCGAGTAATCAACTTCATCATATGATATCAGAGCGACGAAGACGAGAGAAGCTTAATGAGAATTTTCAAGCACTTAGAGCATTACTTCCTCAAGGAACAAAGAAAGACAAAGCTTCCATACTGATAACAGCTAAGGAGACATTGAAATCTTTGATGGCTGAAATTGACAAACTAAGCAAAAGAAATCAAGAATTGATGTCACAACAATTGACAGCAGCAAATAAAGAATCTACAACAACTGAAGAAATTATCAAATTCTCATCAAATGAAAGATTAAACGTTCGAGTTTTGCATGTAACGGGGTCAAGTTCATCAGAAGATGAATCCATGGTGGTGGACTTGCAAGTGAACATGATGGGACAAATTTCTCAAGTTGATGTATTGATTCGATTATTGGAATTCTTAAATCAAGATCAACATGTCAACTTGGTTTCAATGGATGCAACAAATACAAATCATGCACCAGGGAATGATTTACTTCATCAAATAACCTTCAGGCTAAGGATTACTCAGATAAGTGAATGGGACGAGGAAGCCTTCCAGGAAGCAGTGAGAAGAGTGGTTGCTGACTTGATACAGTCCCATGTGGACCAAAATATATGA

Protein sequence

>Msa0283960

MEGVFSLPVAVRTEFIRSLMQSLGCSHICLWSYDTILSNRLSFLDGFYNVINDQLPSSSLGSVAQQLFNQYRILSFDVNDDRVPGLAFRNQRPYLELQQLELLTLSSTEIQTQFYQEARIKTVVFMGCNKGEIELGFLNMSQADIQTALSSLFPEDFSRQTQQINQNPPSSSSSSMRSLSTAGSPTPEYSSLIFNINPPGTSPPQFSPDPTQLGGINIPPMRPVSNTLLPFQLQQLPQITPTQLFPTTHTENDVIMRAIQNVLSTPPSHQHQPPQNYVTHPEASAFGRYRHDKSPNIGSNFRRQSLMKRSFAFFRSLNLMRMRDRNQAARPSSNQLHHMISERRRREKLNENFQALRALLPQGTKKDKASILITAKETLKSLMAEIDKLSKRNQELMSQQLTAANKESTTTEEIIKFSSNERLNVRVLHVTGSSSSEDESMVVDLQVNMMGQISQVDVLIRLLEFLNQDQHVNLVSMDATNTNHAPGNDLLHQITFRLRITQISEWDEEAFQEAVRRVVADLIQSHVDQNI*