Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284130 | XP_003595227.1 | 98.228 | 508 | 9 | 0 | 1 | 508 | 1 | 508 | 0.0 | 1039 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284130 | sp|O82645|IQM1_ARATH | 58.350 | 509 | 161 | 7 | 21 | 503 | 1 | 484 | 0.0 | 572 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284130 | G7IQ65 | 98.228 | 508 | 9 | 0 | 1 | 508 | 1 | 508 | 0.0 | 1039 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0284130 | Msa0322370 | 0.833973 | 3.919856e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284130 | MtrunA17_Chr2g0299641 | 98.228 | 508 | 9 | 0 | 1 | 508 | 1 | 508 | 0.0 | 1039 |
| Msa0284130 | MtrunA17_Chr4g0071041 | 73.292 | 483 | 96 | 7 | 40 | 507 | 6 | 470 | 0.0 | 673 |
| Msa0284130 | MtrunA17_Chr8g0342561 | 62.673 | 434 | 146 | 3 | 74 | 507 | 84 | 501 | 0.0 | 564 |
| Msa0284130 | MtrunA17_Chr2g0330061 | 53.571 | 420 | 158 | 6 | 86 | 499 | 76 | 464 | 1.87e-151 | 441 |
| Msa0284130 | MtrunA17_Chr8g0378761 | 67.266 | 278 | 83 | 2 | 94 | 368 | 126 | 398 | 1.17e-139 | 417 |
| Msa0284130 | MtrunA17_Chr8g0378761 | 63.636 | 55 | 19 | 1 | 416 | 470 | 544 | 597 | 8.94e-14 | 73.9 |
| Msa0284130 | MtrunA17_Chr3g0121261 | 66.914 | 269 | 86 | 1 | 107 | 372 | 5 | 273 | 3.01e-136 | 395 |
| Msa0284130 | MtrunA17_Chr1g0176231 | 66.423 | 274 | 92 | 0 | 96 | 369 | 66 | 339 | 6.75e-131 | 392 |
| Msa0284130 | MtrunA17_Chr1g0176231 | 35.507 | 138 | 61 | 4 | 366 | 501 | 452 | 563 | 1.39e-13 | 73.2 |
| Msa0284130 | MtrunA17_Chr1g0178991 | 46.925 | 439 | 191 | 8 | 87 | 486 | 46 | 481 | 4.26e-123 | 369 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284130 | AT4G33050.5 | 57.224 | 526 | 173 | 8 | 5 | 503 | 56 | 556 | 0.0 | 573 |
| Msa0284130 | AT4G33050.3 | 58.350 | 509 | 161 | 7 | 21 | 503 | 1 | 484 | 0.0 | 572 |
| Msa0284130 | AT4G33050.2 | 54.296 | 547 | 161 | 8 | 21 | 503 | 1 | 522 | 0.0 | 554 |
| Msa0284130 | AT2G26190.3 | 56.147 | 545 | 185 | 8 | 1 | 506 | 1 | 530 | 0.0 | 543 |
| Msa0284130 | AT2G26190.1 | 56.147 | 545 | 185 | 8 | 1 | 506 | 1 | 530 | 0.0 | 543 |
| Msa0284130 | AT5G57010.1 | 63.571 | 420 | 114 | 4 | 84 | 503 | 114 | 494 | 0.0 | 537 |
| Msa0284130 | AT2G26190.2 | 76.103 | 272 | 65 | 0 | 91 | 362 | 126 | 397 | 3.19e-154 | 446 |
| Msa0284130 | AT3G13600.1 | 69.004 | 271 | 79 | 2 | 104 | 369 | 108 | 378 | 1.03e-138 | 413 |
| Msa0284130 | AT3G13600.1 | 50.562 | 89 | 40 | 2 | 416 | 504 | 517 | 601 | 5.16e-17 | 84.3 |
| Msa0284130 | AT3G13600.2 | 69.004 | 271 | 79 | 2 | 104 | 369 | 108 | 378 | 1.03e-138 | 413 |
| Msa0284130 | AT3G13600.2 | 50.562 | 89 | 40 | 2 | 416 | 504 | 517 | 601 | 5.16e-17 | 84.3 |
| Msa0284130 | AT4G33050.4 | 59.524 | 336 | 109 | 4 | 21 | 330 | 1 | 335 | 8.36e-133 | 389 |
| Msa0284130 | AT3G58480.1 | 58.879 | 321 | 127 | 2 | 104 | 419 | 98 | 418 | 1.81e-132 | 396 |
| Msa0284130 | AT3G52870.1 | 48.750 | 400 | 173 | 6 | 104 | 472 | 49 | 447 | 2.29e-129 | 384 |
| Msa0284130 | AT4G33050.1 | 53.476 | 374 | 109 | 5 | 21 | 330 | 1 | 373 | 3.16e-125 | 370 |
| Msa0284130 | AT4G33050.6 | 58.366 | 257 | 80 | 4 | 21 | 251 | 1 | 256 | 2.41e-94 | 287 |
Find 154 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACTTGTATTATGATATT+TGG | 0.123820 | 2_3:+21978952 | Msa0284130:CDS |
| CTATTCTCTTGTAGTTCTTA+TGG | 0.189651 | 2_3:+21980881 | Msa0284130:three_prime_UTR |
| TATAAACTTTGCAGGCTATT+TGG | 0.196615 | 2_3:+21979868 | Msa0284130:intron |
| TCCTTTGTTGCTCACATTAT+TGG | 0.207208 | 2_3:-21980187 | None:intergenic |
| TTCATCAAACAAATTGAAAT+TGG | 0.211861 | 2_3:+21977733 | Msa0284130:five_prime_UTR |
| GATTCATTAGTTTCAATAAA+TGG | 0.225018 | 2_3:-21980120 | None:intergenic |
| CAAACAGCAATTGGGGTTCT+TGG | 0.242705 | 2_3:-21980492 | None:intergenic |
| CAAAATCATAGCACCATCTT+TGG | 0.243712 | 2_3:-21977864 | None:intergenic |
| CTGTTGTTGTTGAGGAATTA+TGG | 0.263614 | 2_3:+21978146 | Msa0284130:CDS |
| ATAGATATTTGTTTGTGTTT+TGG | 0.264992 | 2_3:+21980828 | Msa0284130:three_prime_UTR |
| CAACACTCTAGCTTTCTATC+TGG | 0.277196 | 2_3:+21979545 | Msa0284130:CDS |
| ATTGTTAGGCATTCACTCTT+TGG | 0.277775 | 2_3:+21977815 | Msa0284130:CDS |
| ATACATTGTGTCTTAGTAAA+AGG | 0.287560 | 2_3:-21980937 | None:intergenic |
| GTGTCAAGGGTCACATGTTC+TGG | 0.297346 | 2_3:-21977959 | None:intergenic |
| CTTCAATTCAACTATAGTTT+TGG | 0.297565 | 2_3:+21977839 | Msa0284130:CDS |
| CTCTTGGAAAAGTCGAATAC+TGG | 0.308707 | 2_3:-21980258 | None:intergenic |
| TAATGAATCACAACAAACTA+TGG | 0.319646 | 2_3:+21980134 | Msa0284130:CDS |
| CCCTAAGGCCATGAATCATT+TGG | 0.319682 | 2_3:-21980967 | None:intergenic |
| TACTGGGACCTCAAATTTCT+TGG | 0.321574 | 2_3:-21980241 | None:intergenic |
| GCCCTTGATTGAAGATGTTC+AGG | 0.324654 | 2_3:-21980339 | None:intergenic |
| GAAGAGAAAACAACTTCTTT+AGG | 0.325682 | 2_3:-21978031 | None:intergenic |
| TACTTGCCTCAAACAGCAAT+TGG | 0.345712 | 2_3:-21980501 | None:intergenic |
| CGCCAGTGCATTAAATATCT+TGG | 0.351341 | 2_3:+21979184 | Msa0284130:CDS |
| TTCTCCTAGGCTTGCATACA+TGG | 0.355525 | 2_3:+21980458 | Msa0284130:CDS |
| GATGATGCACCTTCATTCAT+TGG | 0.357552 | 2_3:+21980090 | Msa0284130:CDS |
| AACACTCTAGCTTTCTATCT+GGG | 0.360244 | 2_3:+21979546 | Msa0284130:CDS |
| TTGGCCTTGGAGAAGGTATT+GGG | 0.366036 | 2_3:-21980419 | None:intergenic |
| GGTGTGAATCTACATCTCTA+TGG | 0.373439 | 2_3:+21977754 | Msa0284130:exon |
| CTCTGAAGTTCTCTTCAGTT+GGG | 0.374129 | 2_3:-21979911 | None:intergenic |
| CTGGAGCTGGACCTCGTATT+GGG | 0.379598 | 2_3:+21980301 | Msa0284130:CDS |
| ACTGGAGCTGGACCTCGTAT+TGG | 0.380423 | 2_3:+21980300 | Msa0284130:CDS |
| CAAAATCCCTAAAAGAATAA+AGG | 0.385082 | 2_3:-21980798 | None:intergenic |
| TGAGAACAAGTTTCAACAAA+AGG | 0.385221 | 2_3:+21977885 | Msa0284130:CDS |
| CCCAAATGATTCATGGCCTT+AGG | 0.391619 | 2_3:+21980966 | Msa0284130:three_prime_UTR |
| GGGGCCGCAACCACAGCTGC+TGG | 0.395935 | 2_3:+21979566 | Msa0284130:CDS |
| GGTATTGGGCCATAGTTATA+TGG | 0.396779 | 2_3:-21980405 | None:intergenic |
| CTTGGCCTTGGAGAAGGTAT+TGG | 0.399325 | 2_3:-21980420 | None:intergenic |
| CTAGGAGAAATCCTAACTTT+AGG | 0.404676 | 2_3:-21980444 | None:intergenic |
| TTCTTTACTATCATCAGCTT+GGG | 0.405123 | 2_3:+21977787 | Msa0284130:CDS |
| GGGTGATAATGACCACTATA+AGG | 0.406891 | 2_3:-21979891 | None:intergenic |
| ACTTGCCTCAAACAGCAATT+GGG | 0.408107 | 2_3:-21980500 | None:intergenic |
| AAACAGCAATTGGGGTTCTT+GGG | 0.411345 | 2_3:-21980491 | None:intergenic |
| CATACAGGTTGGAAAAGGTT+TGG | 0.414229 | 2_3:+21978730 | Msa0284130:intron |
| CAAGGCCAAGTCCTAAAGTT+AGG | 0.414360 | 2_3:+21980433 | Msa0284130:CDS |
| CAGCTTGGGAAGAAATTGTT+AGG | 0.416385 | 2_3:+21977801 | Msa0284130:CDS |
| CCAAATGATTCATGGCCTTA+GGG | 0.420899 | 2_3:+21980967 | Msa0284130:three_prime_UTR |
| ATATGAAGTAATTGTTGAAA+AGG | 0.423105 | 2_3:+21979403 | Msa0284130:CDS |
| ATTTAATGCACTGGCGTTGA+AGG | 0.425705 | 2_3:-21979177 | None:intergenic |
| TAACTATTAGATGAATTCAA+TGG | 0.432543 | 2_3:+21980615 | Msa0284130:three_prime_UTR |
| TTATCGTGCAAGTGGTCTAC+TGG | 0.433184 | 2_3:+21980282 | Msa0284130:CDS |
| TCTGCAAGACCATATAACTA+TGG | 0.434374 | 2_3:+21980396 | Msa0284130:CDS |
| GCTAAGAACAAATATCCATT+TGG | 0.436044 | 2_3:-21979477 | None:intergenic |
| CCTAAGGCCATGAATCATTT+GGG | 0.438416 | 2_3:-21980966 | None:intergenic |
| CATAAGAACTACAAGAGAAT+AGG | 0.442565 | 2_3:-21980880 | None:intergenic |
| TCATTCACCCAAATGATTCA+TGG | 0.443011 | 2_3:+21980959 | Msa0284130:three_prime_UTR |
| TGTTATAATTGCAGAAAGAA+AGG | 0.444730 | 2_3:+21979375 | Msa0284130:intron |
| CTAACTTTAGGACTTGGCCT+TGG | 0.449399 | 2_3:-21980432 | None:intergenic |
| CCAACGTTTGATCTCTGATC+GGG | 0.451302 | 2_3:-21980561 | None:intergenic |
| TCTCTGAAGTTCTCTTCAGT+TGG | 0.451697 | 2_3:-21979912 | None:intergenic |
| ATTAGTTTCAATAAATGGAT+TGG | 0.452855 | 2_3:-21980115 | None:intergenic |
| TATGAAGTAATTGTTGAAAA+GGG | 0.453381 | 2_3:+21979404 | Msa0284130:CDS |
| GCTTGATGCTGCAGCAACTA+AGG | 0.459781 | 2_3:+21978072 | Msa0284130:CDS |
| GTATGTTGGAAGGAAACAAA+AGG | 0.459878 | 2_3:+21979514 | Msa0284130:CDS |
| TTTCTTTACTATCATCAGCT+TGG | 0.460682 | 2_3:+21977786 | Msa0284130:CDS |
| CCACTTGCACGATAATCTCT+TGG | 0.464783 | 2_3:-21980274 | None:intergenic |
| TAGAAAAGATGGAAAGTTTG+TGG | 0.467013 | 2_3:+21979439 | Msa0284130:CDS |
| ATTGATTGAGAAGTTTGAGT+AGG | 0.469055 | 2_3:-21980159 | None:intergenic |
| ATGATGCACCTTCATTCATT+GGG | 0.470656 | 2_3:+21980091 | Msa0284130:CDS |
| TTCATCAACATTTGTGTCAA+GGG | 0.472131 | 2_3:-21977972 | None:intergenic |
| GAATTGAGGATAACACAAAC+TGG | 0.472433 | 2_3:+21980702 | Msa0284130:three_prime_UTR |
| TCTCCTAGGCTTGCATACAT+GGG | 0.479470 | 2_3:+21980459 | Msa0284130:CDS |
| AGCAAGGACTAGAGCAGCTA+AGG | 0.483710 | 2_3:+21978608 | Msa0284130:CDS |
| GCAATTGGGGTTCTTGGGCT+AGG | 0.483909 | 2_3:-21980486 | None:intergenic |
| AGAACCCCAATTGCTGTTTG+AGG | 0.487231 | 2_3:+21980495 | Msa0284130:CDS |
| GTCCAAGATATTTAATGCAC+TGG | 0.489596 | 2_3:-21979186 | None:intergenic |
| GAAATCCTAACTTTAGGACT+TGG | 0.490790 | 2_3:-21980438 | None:intergenic |
| ATCCTGAACATCTTCAATCA+AGG | 0.491258 | 2_3:+21980337 | Msa0284130:CDS |
| CAGCTTCAAGCCAATGTTGG+AGG | 0.493190 | 2_3:-21978781 | None:intergenic |
| CTAAAGTTAGGATTTCTCCT+AGG | 0.494756 | 2_3:+21980445 | Msa0284130:CDS |
| TGCAAGTGGTCTACTGGAGC+TGG | 0.497360 | 2_3:+21980288 | Msa0284130:CDS |
| AAGTTAGTGTATAGAAAAGA+TGG | 0.497476 | 2_3:+21979428 | Msa0284130:CDS |
| GAGAACAAGTTTCAACAAAA+GGG | 0.499003 | 2_3:+21977886 | Msa0284130:CDS |
| CACTAATCTTCCAGCAGCTG+TGG | 0.502889 | 2_3:-21979576 | None:intergenic |
| CACAGCTGCTGGAAGATTAG+TGG | 0.503574 | 2_3:+21979577 | Msa0284130:CDS |
| GTTATAATTGCAGAAAGAAA+GGG | 0.503902 | 2_3:+21979376 | Msa0284130:intron |
| CAGGCTATTTGGCCTTATAG+TGG | 0.505306 | 2_3:+21979879 | Msa0284130:intron |
| TTTCATCAACATTTGTGTCA+AGG | 0.505431 | 2_3:-21977973 | None:intergenic |
| GGTCTTGCAGAAGCAGGTCT+AGG | 0.511439 | 2_3:-21980384 | None:intergenic |
| TTAGGACTTGGCCTTGGAGA+AGG | 0.514171 | 2_3:-21980426 | None:intergenic |
| ACCACTAGGGCTTTGTATGT+TGG | 0.515347 | 2_3:+21979500 | Msa0284130:CDS |
| TGGCGTTGAAGGGTAGCCCT+TGG | 0.518338 | 2_3:-21979166 | None:intergenic |
| TGATGAAAACTTGAAACATA+AGG | 0.518550 | 2_3:+21977988 | Msa0284130:CDS |
| GGTTAATGCCAAGAAATTTG+AGG | 0.520668 | 2_3:+21980233 | Msa0284130:CDS |
| TTGAGGCAAGTATTGAAGAA+AGG | 0.522572 | 2_3:+21980512 | Msa0284130:exon |
| ACCAATAATGTGAGCAACAA+AGG | 0.523579 | 2_3:+21980186 | Msa0284130:CDS |
| ACATCTTCAATCAAGGGCAT+TGG | 0.526183 | 2_3:+21980344 | Msa0284130:CDS |
| AGAATTTGTTAGCTTTCTTG+AGG | 0.528950 | 2_3:+21979932 | Msa0284130:CDS |
| TTATATGGTCTTGCAGAAGC+AGG | 0.529498 | 2_3:-21980390 | None:intergenic |
| AGACTGATGAAAAGTCCAAA+TGG | 0.530334 | 2_3:+21979462 | Msa0284130:CDS |
| TTGATTGAGAAGTTTGAGTA+GGG | 0.533972 | 2_3:-21980158 | None:intergenic |
| GTGTGAATCTACATCTCTAT+GGG | 0.537392 | 2_3:+21977755 | Msa0284130:exon |
| TTACAGCTTCAAGCCAATGT+TGG | 0.537705 | 2_3:-21978784 | None:intergenic |
| TGATTGTGCTGTTGTTGTTG+AGG | 0.543569 | 2_3:+21978138 | Msa0284130:CDS |
| CCAAGAGATTATCGTGCAAG+TGG | 0.544662 | 2_3:+21980274 | Msa0284130:CDS |
| CTAAGGTGACACTTGAATTG+AGG | 0.545081 | 2_3:+21980688 | Msa0284130:three_prime_UTR |
| TGTAGGTTGGATGTTGGAGA+TGG | 0.548321 | 2_3:+21979118 | Msa0284130:intron |
| TCTTCCAGCAGCTGTGGTTG+CGG | 0.548897 | 2_3:-21979570 | None:intergenic |
| TATTTGTTCTTAGCACCACT+AGG | 0.553975 | 2_3:+21979486 | Msa0284130:CDS |
| AGATCAATGCTATTAGCCAT+TGG | 0.560671 | 2_3:-21980590 | None:intergenic |
| CTTGCCTCAAACAGCAATTG+GGG | 0.561115 | 2_3:-21980499 | None:intergenic |
| CTTCATAAGCTCAACAACAA+AGG | 0.562349 | 2_3:+21977422 | Msa0284130:five_prime_UTR |
| TCTTGGAAAAGTCGAATACT+GGG | 0.564105 | 2_3:-21980257 | None:intergenic |
| TGGCCTCTGACGACTGAAGT+AGG | 0.564208 | 2_3:+21980639 | Msa0284130:three_prime_UTR |
| ATTGACCCACGTCATCGCTA+TGG | 0.565300 | 2_3:+21978921 | Msa0284130:CDS |
| AGCTTCAAGCCAATGTTGGA+GGG | 0.566073 | 2_3:-21978780 | None:intergenic |
| CTAGGGCTTTGTATGTTGGA+AGG | 0.566948 | 2_3:+21979504 | Msa0284130:CDS |
| GATATGAAGGTGGAAAGCAT+TGG | 0.567332 | 2_3:+21978506 | Msa0284130:intron |
| AGAAACTGCAGTGTCAAGGT+GGG | 0.571406 | 2_3:+21978581 | Msa0284130:CDS |
| CTTTCTTGAGGAGCACAAAG+TGG | 0.581632 | 2_3:+21979944 | Msa0284130:CDS |
| TCCTGAACATCTTCAATCAA+GGG | 0.582807 | 2_3:+21980338 | Msa0284130:CDS |
| TATGTTGGAAGGAAACAAAA+GGG | 0.583609 | 2_3:+21979515 | Msa0284130:CDS |
| TTTAATGCACTGGCGTTGAA+GGG | 0.586946 | 2_3:-21979176 | None:intergenic |
| AACAAGAAACTGCAGTGTCA+AGG | 0.588506 | 2_3:+21978577 | Msa0284130:CDS |
| ATTTGTTCTTAGCACCACTA+GGG | 0.589990 | 2_3:+21979487 | Msa0284130:CDS |
| TCCAACGTTTGATCTCTGAT+CGG | 0.595408 | 2_3:-21980562 | None:intergenic |
| CAAAATTAATAATGCAACAG+AGG | 0.596595 | 2_3:+21980212 | Msa0284130:CDS |
| CAAACGTTGGATTCATCCAA+TGG | 0.597617 | 2_3:+21980574 | Msa0284130:three_prime_UTR |
| GGTTGGAAAAGGTTTGGCCA+AGG | 0.600406 | 2_3:+21978736 | Msa0284130:intron |
| TATTAGATGAATTCAATGGA+TGG | 0.601301 | 2_3:+21980619 | Msa0284130:three_prime_UTR |
| TTAATCTTGAGAAATGTCCA+AGG | 0.602258 | 2_3:+21979149 | Msa0284130:CDS |
| CTCCTAGGCTTGCATACATG+GGG | 0.604327 | 2_3:+21980460 | Msa0284130:CDS |
| AGGTTTGGCCAAGGATGACA+AGG | 0.605249 | 2_3:+21978745 | Msa0284130:CDS |
| TTGTGTCCATAGCGATGACG+TGG | 0.606284 | 2_3:-21978927 | None:intergenic |
| AAGAAACTGCAGTGTCAAGG+TGG | 0.608522 | 2_3:+21978580 | Msa0284130:CDS |
| ACACTCTAGCTTTCTATCTG+GGG | 0.613665 | 2_3:+21979547 | Msa0284130:CDS |
| TCGGGGAGAATCTAGTGCAT+AGG | 0.617845 | 2_3:-21980543 | None:intergenic |
| TCTTTAGGCAAAGAAAGCAA+AGG | 0.627914 | 2_3:-21978016 | None:intergenic |
| TCTCCTACTTCAGTCGTCAG+AGG | 0.629647 | 2_3:-21980642 | None:intergenic |
| GGATTGGTCCCAATGAATGA+AGG | 0.630179 | 2_3:-21980099 | None:intergenic |
| AGCCCCATGTATGCAAGCCT+AGG | 0.635290 | 2_3:-21980462 | None:intergenic |
| AGTGGACCTCTCTAATGTCA+AGG | 0.638394 | 2_3:+21979962 | Msa0284130:CDS |
| AATTCACCTTGACATTAGAG+AGG | 0.640988 | 2_3:-21979968 | None:intergenic |
| TGTCAAGGTGGGGAAGAGCA+AGG | 0.642133 | 2_3:+21978592 | Msa0284130:CDS |
| GAAACTGCAGTGTCAAGGTG+GGG | 0.643986 | 2_3:+21978582 | Msa0284130:CDS |
| ATGGCCCAATACCTTCTCCA+AGG | 0.644628 | 2_3:+21980415 | Msa0284130:CDS |
| GGAAGATTAGTGGCACAACA+AGG | 0.648672 | 2_3:+21979587 | Msa0284130:CDS |
| TAATCTTGAGAAATGTCCAA+GGG | 0.660398 | 2_3:+21979150 | Msa0284130:CDS |
| TCTGACGACTGAAGTAGGAG+AGG | 0.661874 | 2_3:+21980644 | Msa0284130:three_prime_UTR |
| TCCAACATACAAAGCCCTAG+TGG | 0.663510 | 2_3:-21979501 | None:intergenic |
| CCCGATCAGAGATCAAACGT+TGG | 0.671950 | 2_3:+21980561 | Msa0284130:three_prime_UTR |
| CAACGTTTGATCTCTGATCG+GGG | 0.681229 | 2_3:-21980560 | None:intergenic |
| GGCACAACAAGGTGTACTCG+AGG | 0.687576 | 2_3:+21979598 | Msa0284130:CDS |
| TCACGCACACACCCAATACG+AGG | 0.694431 | 2_3:-21980312 | None:intergenic |
| TGTGTCCATAGCGATGACGT+GGG | 0.734536 | 2_3:-21978926 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTATAATATTATATT+AGG | - | chr2_3:21978819-21978838 | None:intergenic | 0.0% |
| !!! | ATTATTTATTATTTTATTTT+TGG | + | chr2_3:21980756-21980775 | Msa0284130:three_prime_UTR | 0.0% |
| !!! | TTATTTATTATTTTATTTTT+GGG | + | chr2_3:21980757-21980776 | Msa0284130:three_prime_UTR | 0.0% |
| !! | TTTGAACAAAAAAAATATTA+AGG | + | chr2_3:21977558-21977577 | Msa0284130:intron | 10.0% |
| !! | AAATTAAATTGAATTTGAAA+TGG | - | chr2_3:21978640-21978659 | None:intergenic | 10.0% |
| !!! | TATTTGTTATTTCATTTTTA+AGG | + | chr2_3:21978684-21978703 | Msa0284130:intron | 10.0% |
| !!! | TTTTAAATCACTTATGAAAT+AGG | - | chr2_3:21977599-21977618 | None:intergenic | 15.0% |
| !! | ATATCACAAAATAAAAAAGA+CGG | - | chr2_3:21978189-21978208 | None:intergenic | 15.0% |
| !!! | GTTTTTTGTATGTTATTAAA+TGG | + | chr2_3:21978470-21978489 | Msa0284130:intron | 15.0% |
| !! | TGAAAAATAAAAATTAGCAA+AGG | - | chr2_3:21978712-21978731 | None:intergenic | 15.0% |
| !!! | CTAATTTTTATTTTTCATAC+AGG | + | chr2_3:21978715-21978734 | Msa0284130:intron | 15.0% |
| !! | ATTAGATTATATACTATCAT+CGG | - | chr2_3:21979343-21979362 | None:intergenic | 15.0% |
| !!! | ATTATTTTATTTTTGGGTTT+TGG | + | chr2_3:21980763-21980782 | Msa0284130:three_prime_UTR | 15.0% |
| !!! | ATTATTCCTTTATTCTTTTA+GGG | + | chr2_3:21980792-21980811 | Msa0284130:three_prime_UTR | 15.0% |
| !!! | ATTCTATTGTTTTTTTTAAG+AGG | + | chr2_3:21980856-21980875 | Msa0284130:three_prime_UTR | 15.0% |
| !! | AAAATTTCATTGAAAGCAAA+GGG | - | chr2_3:21977461-21977480 | None:intergenic | 20.0% |
| !! | AAAAATTTCATTGAAAGCAA+AGG | - | chr2_3:21977462-21977481 | None:intergenic | 20.0% |
| !!! | CAAAAAATTTGACTTATGTA+TGG | + | chr2_3:21977649-21977668 | Msa0284130:intron | 20.0% |
| !! | TTCATCAAACAAATTGAAAT+TGG | + | chr2_3:21977733-21977752 | Msa0284130:five_prime_UTR | 20.0% |
| !!! | CGAATTTTGATATTTGATTT+TGG | + | chr2_3:21978248-21978267 | Msa0284130:intron | 20.0% |
| !! | TATAATCTAAGAGAGTAAAT+TGG | + | chr2_3:21978418-21978437 | Msa0284130:intron | 20.0% |
| !! | TTTGTATGTTATTAAATGGA+TGG | + | chr2_3:21978474-21978493 | Msa0284130:intron | 20.0% |
| !!! | ATGGTTTTTAAATGATATGA+AGG | + | chr2_3:21978493-21978512 | Msa0284130:intron | 20.0% |
| !!! | TTTTTATTTTTCATACAGGT+TGG | + | chr2_3:21978719-21978738 | Msa0284130:intron | 20.0% |
| !! | TCAATAAGATATAGATGATT+AGG | - | chr2_3:21979035-21979054 | None:intergenic | 20.0% |
| !!! | TTTTAAGTATATATCGAACT+CGG | + | chr2_3:21979261-21979280 | Msa0284130:intron | 20.0% |
| !! | TTAGATTATATACTATCATC+GGG | - | chr2_3:21979342-21979361 | None:intergenic | 20.0% |
| !! | ATATGAAGTAATTGTTGAAA+AGG | + | chr2_3:21979403-21979422 | Msa0284130:CDS | 20.0% |
| !! | TATGAAGTAATTGTTGAAAA+GGG | + | chr2_3:21979404-21979423 | Msa0284130:CDS | 20.0% |
| !! | ATTCAGGTCAATTAAAAAAA+CGG | - | chr2_3:21979637-21979656 | None:intergenic | 20.0% |
| !! | TGTAATATAATGAAAACACA+TGG | - | chr2_3:21979797-21979816 | None:intergenic | 20.0% |
| !! | TAGTGAACAAAAAAGTAAAT+TGG | + | chr2_3:21980007-21980026 | Msa0284130:intron | 20.0% |
| !!! | ATTAGTTTCAATAAATGGAT+TGG | - | chr2_3:21980118-21980137 | None:intergenic | 20.0% |
| !!! | GATTCATTAGTTTCAATAAA+TGG | - | chr2_3:21980123-21980142 | None:intergenic | 20.0% |
| !! | TAACTATTAGATGAATTCAA+TGG | + | chr2_3:21980615-21980634 | Msa0284130:three_prime_UTR | 20.0% |
| !!! | GATTATTCCTTTATTCTTTT+AGG | + | chr2_3:21980791-21980810 | Msa0284130:three_prime_UTR | 20.0% |
| !!! | ATAGATATTTGTTTGTGTTT+TGG | + | chr2_3:21980828-21980847 | Msa0284130:three_prime_UTR | 20.0% |
| !!! | ATGTTTTATTTCCTTCAAAA+AGG | - | chr2_3:21980909-21980928 | None:intergenic | 20.0% |
| ! | ATGTATGGTTTGATTAATGA+TGG | + | chr2_3:21977664-21977683 | Msa0284130:intron | 25.0% |
| ! | GGTTTATATGTAATTTGAAC+AGG | + | chr2_3:21977685-21977704 | Msa0284130:intron | 25.0% |
| !! | CTTCAATTCAACTATAGTTT+TGG | + | chr2_3:21977839-21977858 | Msa0284130:CDS | 25.0% |
| ! | TGATGAAAACTTGAAACATA+AGG | + | chr2_3:21977988-21978007 | Msa0284130:CDS | 25.0% |
| ! | CAATGACTAAATTGACTATT+TGG | - | chr2_3:21978220-21978239 | None:intergenic | 25.0% |
| !! | TTTAGTCTTTAATATTGTCC+CGG | + | chr2_3:21978331-21978350 | Msa0284130:intron | 25.0% |
| !! | ATTTTCTATCACAAGTTTTC+CGG | - | chr2_3:21978353-21978372 | None:intergenic | 25.0% |
| !! | GTTTTTAAATGATATGAAGG+TGG | + | chr2_3:21978496-21978515 | Msa0284130:intron | 25.0% |
| ! | TGCACTTGTATTATGATATT+TGG | + | chr2_3:21978952-21978971 | Msa0284130:CDS | 25.0% |
| ! | AAAGCTTACCAATAGAAAAA+TGG | - | chr2_3:21978999-21979018 | None:intergenic | 25.0% |
| ! | TATAGATGATTAGGTACTAT+AGG | - | chr2_3:21979026-21979045 | None:intergenic | 25.0% |
| ! | ATGAAGCTAGTAAAAACTAT+TGG | + | chr2_3:21979068-21979087 | Msa0284130:intron | 25.0% |
| !!! | CTTGATGGTAAATTTTTTGT+AGG | + | chr2_3:21979101-21979120 | Msa0284130:intron | 25.0% |
| !!! | ATGGTAAATTTTTTGTAGGT+TGG | + | chr2_3:21979105-21979124 | Msa0284130:intron | 25.0% |
| ! | ATAATCTACTGATAACTTAC+TGG | - | chr2_3:21979211-21979230 | None:intergenic | 25.0% |
| ! | TAGATTATATACTATCATCG+GGG | - | chr2_3:21979341-21979360 | None:intergenic | 25.0% |
| ! | TGTTATAATTGCAGAAAGAA+AGG | + | chr2_3:21979375-21979394 | Msa0284130:intron | 25.0% |
| ! | GTTATAATTGCAGAAAGAAA+GGG | + | chr2_3:21979376-21979395 | Msa0284130:intron | 25.0% |
| ! | AAGTTAGTGTATAGAAAAGA+TGG | + | chr2_3:21979428-21979447 | Msa0284130:CDS | 25.0% |
| ! | GTTTATTGTATAAACTTTGC+AGG | + | chr2_3:21979860-21979879 | Msa0284130:intron | 25.0% |
| ! | TAATGAATCACAACAAACTA+TGG | + | chr2_3:21980134-21980153 | Msa0284130:CDS | 25.0% |
| ! | CAAAATTAATAATGCAACAG+AGG | + | chr2_3:21980212-21980231 | Msa0284130:CDS | 25.0% |
| ! | TATTAGATGAATTCAATGGA+TGG | + | chr2_3:21980619-21980638 | Msa0284130:three_prime_UTR | 25.0% |
| ! | CAAAATCCCTAAAAGAATAA+AGG | - | chr2_3:21980801-21980820 | None:intergenic | 25.0% |
| !!! | CTTTATTCTTTTAGGGATTT+TGG | + | chr2_3:21980799-21980818 | Msa0284130:three_prime_UTR | 25.0% |
| ! | ATACATTGTGTCTTAGTAAA+AGG | - | chr2_3:21980940-21980959 | None:intergenic | 25.0% |
| CACTTATGAAATAGGACAAT+TGG | - | chr2_3:21977591-21977610 | None:intergenic | 30.0% | |
| TTTCTTTACTATCATCAGCT+TGG | + | chr2_3:21977786-21977805 | Msa0284130:CDS | 30.0% | |
| TTCTTTACTATCATCAGCTT+GGG | + | chr2_3:21977787-21977806 | Msa0284130:CDS | 30.0% | |
| !!! | TATAGTTTTGGTTCCAAAGA+TGG | + | chr2_3:21977851-21977870 | Msa0284130:CDS | 30.0% |
| TGAGAACAAGTTTCAACAAA+AGG | + | chr2_3:21977885-21977904 | Msa0284130:CDS | 30.0% | |
| GAGAACAAGTTTCAACAAAA+GGG | + | chr2_3:21977886-21977905 | Msa0284130:CDS | 30.0% | |
| ! | TCTAACCTAGTTGAACTTTT+TGG | - | chr2_3:21977929-21977948 | None:intergenic | 30.0% |
| AAAAAGTTCAACTAGGTTAG+AGG | + | chr2_3:21977928-21977947 | Msa0284130:CDS | 30.0% | |
| TTCATCAACATTTGTGTCAA+GGG | - | chr2_3:21977975-21977994 | None:intergenic | 30.0% | |
| TTTCATCAACATTTGTGTCA+AGG | - | chr2_3:21977976-21977995 | None:intergenic | 30.0% | |
| GAAGAGAAAACAACTTCTTT+AGG | - | chr2_3:21978034-21978053 | None:intergenic | 30.0% | |
| ! | TTTTCTATCACAAGTTTTCC+GGG | - | chr2_3:21978352-21978371 | None:intergenic | 30.0% |
| !! | TTTTTCATACAGGTTGGAAA+AGG | + | chr2_3:21978725-21978744 | Msa0284130:intron | 30.0% |
| AGAAAAATGGTTGAGTACTT+TGG | - | chr2_3:21978986-21979005 | None:intergenic | 30.0% | |
| !! | GTACTCAACCATTTTTCTAT+TGG | + | chr2_3:21978988-21979007 | Msa0284130:CDS | 30.0% |
| !!! | ATTTTTTGTAGGTTGGATGT+TGG | + | chr2_3:21979112-21979131 | Msa0284130:intron | 30.0% |
| TTAATCTTGAGAAATGTCCA+AGG | + | chr2_3:21979149-21979168 | Msa0284130:CDS | 30.0% | |
| TAATCTTGAGAAATGTCCAA+GGG | + | chr2_3:21979150-21979169 | Msa0284130:CDS | 30.0% | |
| TAGAAAAGATGGAAAGTTTG+TGG | + | chr2_3:21979439-21979458 | Msa0284130:CDS | 30.0% | |
| GCTAAGAACAAATATCCATT+TGG | - | chr2_3:21979480-21979499 | None:intergenic | 30.0% | |
| TATGTTGGAAGGAAACAAAA+GGG | + | chr2_3:21979515-21979534 | Msa0284130:CDS | 30.0% | |
| TTTACAACTTCAACGAATTC+AGG | - | chr2_3:21979653-21979672 | None:intergenic | 30.0% | |
| AAGTTGTAAATCTTAACCGT+TGG | + | chr2_3:21979663-21979682 | Msa0284130:intron | 30.0% | |
| TATAAACTTTGCAGGCTATT+TGG | + | chr2_3:21979868-21979887 | Msa0284130:intron | 30.0% | |
| !! | AGAATTTGTTAGCTTTCTTG+AGG | + | chr2_3:21979932-21979951 | Msa0284130:CDS | 30.0% |
| ! | ATAGCATATCTCTGAAAAGA+GGG | - | chr2_3:21980066-21980085 | None:intergenic | 30.0% |
| ! | TATAGCATATCTCTGAAAAG+AGG | - | chr2_3:21980067-21980086 | None:intergenic | 30.0% |
| TTGATTGAGAAGTTTGAGTA+GGG | - | chr2_3:21980161-21980180 | None:intergenic | 30.0% | |
| ATTGATTGAGAAGTTTGAGT+AGG | - | chr2_3:21980162-21980181 | None:intergenic | 30.0% | |
| ! | CTTAGCTGACAATTTTTATG+AGG | - | chr2_3:21980673-21980692 | None:intergenic | 30.0% |
| CTCATAAAAATTGTCAGCTA+AGG | + | chr2_3:21980671-21980690 | Msa0284130:three_prime_UTR | 30.0% | |
| CATAAGAACTACAAGAGAAT+AGG | - | chr2_3:21980883-21980902 | None:intergenic | 30.0% | |
| CTATTCTCTTGTAGTTCTTA+TGG | + | chr2_3:21980881-21980900 | Msa0284130:three_prime_UTR | 30.0% | |
| ! | TTCTTATGGAACCTTTTTGA+AGG | + | chr2_3:21980895-21980914 | Msa0284130:three_prime_UTR | 30.0% |
| CTTCATAAGCTCAACAACAA+AGG | + | chr2_3:21977422-21977441 | Msa0284130:five_prime_UTR | 35.0% | |
| GTGTGAATCTACATCTCTAT+GGG | + | chr2_3:21977755-21977774 | Msa0284130:exon | 35.0% | |
| ATTGTTAGGCATTCACTCTT+TGG | + | chr2_3:21977815-21977834 | Msa0284130:CDS | 35.0% | |
| CAAAATCATAGCACCATCTT+TGG | - | chr2_3:21977867-21977886 | None:intergenic | 35.0% | |
| CAACACCAAAAAGTTCAACT+AGG | + | chr2_3:21977921-21977940 | Msa0284130:CDS | 35.0% | |
| TCTTTAGGCAAAGAAAGCAA+AGG | - | chr2_3:21978019-21978038 | None:intergenic | 35.0% | |
| ! | TCAAGCTCAAAAACAGGTTT+TGG | - | chr2_3:21978058-21978077 | None:intergenic | 35.0% |
| ! | CTGTTGTTGTTGAGGAATTA+TGG | + | chr2_3:21978146-21978165 | Msa0284130:CDS | 35.0% |
| AAAAATTAGCCCTCCAACAT+TGG | + | chr2_3:21978771-21978790 | Msa0284130:CDS | 35.0% | |
| ATTGGAGCTGATAATCTTGA+TGG | + | chr2_3:21979086-21979105 | Msa0284130:intron | 35.0% | |
| GTCCAAGATATTTAATGCAC+TGG | - | chr2_3:21979189-21979208 | None:intergenic | 35.0% | |
| TCTGACTATTATAAACCCTG+AGG | - | chr2_3:21979289-21979308 | None:intergenic | 35.0% | |
| AGACTGATGAAAAGTCCAAA+TGG | + | chr2_3:21979462-21979481 | Msa0284130:CDS | 35.0% | |
| TATTTGTTCTTAGCACCACT+AGG | + | chr2_3:21979486-21979505 | Msa0284130:CDS | 35.0% | |
| ATTTGTTCTTAGCACCACTA+GGG | + | chr2_3:21979487-21979506 | Msa0284130:CDS | 35.0% | |
| GTATGTTGGAAGGAAACAAA+AGG | + | chr2_3:21979514-21979533 | Msa0284130:CDS | 35.0% | |
| !! | AACACTCTAGCTTTCTATCT+GGG | + | chr2_3:21979546-21979565 | Msa0284130:CDS | 35.0% |
| AATTCACCTTGACATTAGAG+AGG | - | chr2_3:21979971-21979990 | None:intergenic | 35.0% | |
| ATGATGCACCTTCATTCATT+GGG | + | chr2_3:21980091-21980110 | Msa0284130:CDS | 35.0% | |
| ACCAATAATGTGAGCAACAA+AGG | + | chr2_3:21980186-21980205 | Msa0284130:CDS | 35.0% | |
| TCCTTTGTTGCTCACATTAT+TGG | - | chr2_3:21980190-21980209 | None:intergenic | 35.0% | |
| GGTTAATGCCAAGAAATTTG+AGG | + | chr2_3:21980233-21980252 | Msa0284130:CDS | 35.0% | |
| TCTTGGAAAAGTCGAATACT+GGG | - | chr2_3:21980260-21980279 | None:intergenic | 35.0% | |
| ATCCTGAACATCTTCAATCA+AGG | + | chr2_3:21980337-21980356 | Msa0284130:CDS | 35.0% | |
| TCCTGAACATCTTCAATCAA+GGG | + | chr2_3:21980338-21980357 | Msa0284130:CDS | 35.0% | |
| TCTGCAAGACCATATAACTA+TGG | + | chr2_3:21980396-21980415 | Msa0284130:CDS | 35.0% | |
| !! | GAAATCCTAACTTTAGGACT+TGG | - | chr2_3:21980441-21980460 | None:intergenic | 35.0% |
| CTAGGAGAAATCCTAACTTT+AGG | - | chr2_3:21980447-21980466 | None:intergenic | 35.0% | |
| CTAAAGTTAGGATTTCTCCT+AGG | + | chr2_3:21980445-21980464 | Msa0284130:CDS | 35.0% | |
| !! | TTGAGGCAAGTATTGAAGAA+AGG | + | chr2_3:21980512-21980531 | Msa0284130:exon | 35.0% |
| AGATCAATGCTATTAGCCAT+TGG | - | chr2_3:21980593-21980612 | None:intergenic | 35.0% | |
| GAATTGAGGATAACACAAAC+TGG | + | chr2_3:21980702-21980721 | Msa0284130:three_prime_UTR | 35.0% | |
| TCATTCACCCAAATGATTCA+TGG | + | chr2_3:21980959-21980978 | Msa0284130:three_prime_UTR | 35.0% | |
| GGTGTGAATCTACATCTCTA+TGG | + | chr2_3:21977754-21977773 | Msa0284130:exon | 40.0% | |
| CAGCTTGGGAAGAAATTGTT+AGG | + | chr2_3:21977801-21977820 | Msa0284130:CDS | 40.0% | |
| ! | TGATTGTGCTGTTGTTGTTG+AGG | + | chr2_3:21978138-21978157 | Msa0284130:CDS | 40.0% |
| ! | GATATGAAGGTGGAAAGCAT+TGG | + | chr2_3:21978506-21978525 | Msa0284130:intron | 40.0% |
| AACAAGAAACTGCAGTGTCA+AGG | + | chr2_3:21978577-21978596 | Msa0284130:CDS | 40.0% | |
| ! | CATACAGGTTGGAAAAGGTT+TGG | + | chr2_3:21978730-21978749 | Msa0284130:intron | 40.0% |
| ! | TTTTTGTGCCTTGTCATCCT+TGG | - | chr2_3:21978756-21978775 | None:intergenic | 40.0% |
| TTACAGCTTCAAGCCAATGT+TGG | - | chr2_3:21978787-21978806 | None:intergenic | 40.0% | |
| ! | TTTAATGCACTGGCGTTGAA+GGG | - | chr2_3:21979179-21979198 | None:intergenic | 40.0% |
| ! | ATTTAATGCACTGGCGTTGA+AGG | - | chr2_3:21979180-21979199 | None:intergenic | 40.0% |
| CGCCAGTGCATTAAATATCT+TGG | + | chr2_3:21979184-21979203 | Msa0284130:CDS | 40.0% | |
| !! | CAACACTCTAGCTTTCTATC+TGG | + | chr2_3:21979545-21979564 | Msa0284130:CDS | 40.0% |
| !! | ACACTCTAGCTTTCTATCTG+GGG | + | chr2_3:21979547-21979566 | Msa0284130:CDS | 40.0% |
| ATCATCTGATCGTCATCCAA+CGG | - | chr2_3:21979682-21979701 | None:intergenic | 40.0% | |
| GAATCTTGACCGTCAGATAA+AGG | - | chr2_3:21979765-21979784 | None:intergenic | 40.0% | |
| ! | GGGTGATAATGACCACTATA+AGG | - | chr2_3:21979894-21979913 | None:intergenic | 40.0% |
| !! | CTCTGAAGTTCTCTTCAGTT+GGG | - | chr2_3:21979914-21979933 | None:intergenic | 40.0% |
| !! | TCTCTGAAGTTCTCTTCAGT+TGG | - | chr2_3:21979915-21979934 | None:intergenic | 40.0% |
| GATGATGCACCTTCATTCAT+TGG | + | chr2_3:21980090-21980109 | Msa0284130:CDS | 40.0% | |
| TACTGGGACCTCAAATTTCT+TGG | - | chr2_3:21980244-21980263 | None:intergenic | 40.0% | |
| CTCTTGGAAAAGTCGAATAC+TGG | - | chr2_3:21980261-21980280 | None:intergenic | 40.0% | |
| ! | ACATCTTCAATCAAGGGCAT+TGG | + | chr2_3:21980344-21980363 | Msa0284130:CDS | 40.0% |
| ! | TTATATGGTCTTGCAGAAGC+AGG | - | chr2_3:21980393-21980412 | None:intergenic | 40.0% |
| ! | GGTATTGGGCCATAGTTATA+TGG | - | chr2_3:21980408-21980427 | None:intergenic | 40.0% |
| AAACAGCAATTGGGGTTCTT+GGG | - | chr2_3:21980494-21980513 | None:intergenic | 40.0% | |
| ACTTGCCTCAAACAGCAATT+GGG | - | chr2_3:21980503-21980522 | None:intergenic | 40.0% | |
| TACTTGCCTCAAACAGCAAT+TGG | - | chr2_3:21980504-21980523 | None:intergenic | 40.0% | |
| TCCAACGTTTGATCTCTGAT+CGG | - | chr2_3:21980565-21980584 | None:intergenic | 40.0% | |
| CAAACGTTGGATTCATCCAA+TGG | + | chr2_3:21980574-21980593 | Msa0284130:three_prime_UTR | 40.0% | |
| CTAAGGTGACACTTGAATTG+AGG | + | chr2_3:21980688-21980707 | Msa0284130:three_prime_UTR | 40.0% | |
| CCTAAGGCCATGAATCATTT+GGG | - | chr2_3:21980969-21980988 | None:intergenic | 40.0% | |
| ! | CCAAATGATTCATGGCCTTA+GGG | + | chr2_3:21980967-21980986 | Msa0284130:three_prime_UTR | 40.0% |
| GCAGCATCAAGCTCAAAAAC+AGG | - | chr2_3:21978064-21978083 | None:intergenic | 45.0% | |
| AAGAAACTGCAGTGTCAAGG+TGG | + | chr2_3:21978580-21978599 | Msa0284130:CDS | 45.0% | |
| AGAAACTGCAGTGTCAAGGT+GGG | + | chr2_3:21978581-21978600 | Msa0284130:CDS | 45.0% | |
| AGCTTCAAGCCAATGTTGGA+GGG | - | chr2_3:21978783-21978802 | None:intergenic | 45.0% | |
| ! | TGTAGGTTGGATGTTGGAGA+TGG | + | chr2_3:21979118-21979137 | Msa0284130:intron | 45.0% |
| TATATCGAACTCGGTACCTC+AGG | + | chr2_3:21979270-21979289 | Msa0284130:intron | 45.0% | |
| ATATCGAACTCGGTACCTCA+GGG | + | chr2_3:21979271-21979290 | Msa0284130:intron | 45.0% | |
| ! | ACCACTAGGGCTTTGTATGT+TGG | + | chr2_3:21979500-21979519 | Msa0284130:CDS | 45.0% |
| TCCAACATACAAAGCCCTAG+TGG | - | chr2_3:21979504-21979523 | None:intergenic | 45.0% | |
| ! | CTAGGGCTTTGTATGTTGGA+AGG | + | chr2_3:21979504-21979523 | Msa0284130:CDS | 45.0% |
| GGAAGATTAGTGGCACAACA+AGG | + | chr2_3:21979587-21979606 | Msa0284130:CDS | 45.0% | |
| ATTGCCCGACCTTTATCTGA+CGG | + | chr2_3:21979753-21979772 | Msa0284130:intron | 45.0% | |
| TTGACCGTCAGATAAAGGTC+GGG | - | chr2_3:21979760-21979779 | None:intergenic | 45.0% | |
| CTTGACCGTCAGATAAAGGT+CGG | - | chr2_3:21979761-21979780 | None:intergenic | 45.0% | |
| !! | CAGGCTATTTGGCCTTATAG+TGG | + | chr2_3:21979879-21979898 | Msa0284130:intron | 45.0% |
| ! | CTTTCTTGAGGAGCACAAAG+TGG | + | chr2_3:21979944-21979963 | Msa0284130:CDS | 45.0% |
| AGTGGACCTCTCTAATGTCA+AGG | + | chr2_3:21979962-21979981 | Msa0284130:CDS | 45.0% | |
| !! | GGATTGGTCCCAATGAATGA+AGG | - | chr2_3:21980102-21980121 | None:intergenic | 45.0% |
| CCACTTGCACGATAATCTCT+TGG | - | chr2_3:21980277-21980296 | None:intergenic | 45.0% | |
| CCAAGAGATTATCGTGCAAG+TGG | + | chr2_3:21980274-21980293 | Msa0284130:CDS | 45.0% | |
| TTATCGTGCAAGTGGTCTAC+TGG | + | chr2_3:21980282-21980301 | Msa0284130:CDS | 45.0% | |
| GCCCTTGATTGAAGATGTTC+AGG | - | chr2_3:21980342-21980361 | None:intergenic | 45.0% | |
| !! | TTGGCCTTGGAGAAGGTATT+GGG | - | chr2_3:21980422-21980441 | None:intergenic | 45.0% |
| !! | CTAACTTTAGGACTTGGCCT+TGG | - | chr2_3:21980435-21980454 | None:intergenic | 45.0% |
| CAAGGCCAAGTCCTAAAGTT+AGG | + | chr2_3:21980433-21980452 | Msa0284130:CDS | 45.0% | |
| TTCTCCTAGGCTTGCATACA+TGG | + | chr2_3:21980458-21980477 | Msa0284130:CDS | 45.0% | |
| TCTCCTAGGCTTGCATACAT+GGG | + | chr2_3:21980459-21980478 | Msa0284130:CDS | 45.0% | |
| CAAACAGCAATTGGGGTTCT+TGG | - | chr2_3:21980495-21980514 | None:intergenic | 45.0% | |
| !! | AGAACCCCAATTGCTGTTTG+AGG | + | chr2_3:21980495-21980514 | Msa0284130:CDS | 45.0% |
| CTTGCCTCAAACAGCAATTG+GGG | - | chr2_3:21980502-21980521 | None:intergenic | 45.0% | |
| CAACGTTTGATCTCTGATCG+GGG | - | chr2_3:21980563-21980582 | None:intergenic | 45.0% | |
| CCAACGTTTGATCTCTGATC+GGG | - | chr2_3:21980564-21980583 | None:intergenic | 45.0% | |
| CCCAAATGATTCATGGCCTT+AGG | + | chr2_3:21980966-21980985 | Msa0284130:three_prime_UTR | 45.0% | |
| CCCTAAGGCCATGAATCATT+TGG | - | chr2_3:21980970-21980989 | None:intergenic | 45.0% | |
| !!! | ATTTTTTCTTATATTTTTTT+TGG | + | chr2_3:21977476-21977495 | Msa0284130:intron | 5.0% |
| GTGTCAAGGGTCACATGTTC+TGG | - | chr2_3:21977962-21977981 | None:intergenic | 50.0% | |
| GCTTGATGCTGCAGCAACTA+AGG | + | chr2_3:21978072-21978091 | Msa0284130:CDS | 50.0% | |
| GAAACTGCAGTGTCAAGGTG+GGG | + | chr2_3:21978582-21978601 | Msa0284130:CDS | 50.0% | |
| AGCAAGGACTAGAGCAGCTA+AGG | + | chr2_3:21978608-21978627 | Msa0284130:CDS | 50.0% | |
| GGTTGGAAAAGGTTTGGCCA+AGG | + | chr2_3:21978736-21978755 | Msa0284130:intron | 50.0% | |
| AGGTTTGGCCAAGGATGACA+AGG | + | chr2_3:21978745-21978764 | Msa0284130:CDS | 50.0% | |
| CAGCTTCAAGCCAATGTTGG+AGG | - | chr2_3:21978784-21978803 | None:intergenic | 50.0% | |
| ATTGACCCACGTCATCGCTA+TGG | + | chr2_3:21978921-21978940 | Msa0284130:CDS | 50.0% | |
| TGTGTCCATAGCGATGACGT+GGG | - | chr2_3:21978929-21978948 | None:intergenic | 50.0% | |
| TTGTGTCCATAGCGATGACG+TGG | - | chr2_3:21978930-21978949 | None:intergenic | 50.0% | |
| TCATCGGGGTCTAATGCATG+TGG | - | chr2_3:21979327-21979346 | None:intergenic | 50.0% | |
| CACTAATCTTCCAGCAGCTG+TGG | - | chr2_3:21979579-21979598 | None:intergenic | 50.0% | |
| CACAGCTGCTGGAAGATTAG+TGG | + | chr2_3:21979577-21979596 | Msa0284130:CDS | 50.0% | |
| ATGGCCCAATACCTTCTCCA+AGG | + | chr2_3:21980415-21980434 | Msa0284130:CDS | 50.0% | |
| !! | CTTGGCCTTGGAGAAGGTAT+TGG | - | chr2_3:21980423-21980442 | None:intergenic | 50.0% |
| !! | TTAGGACTTGGCCTTGGAGA+AGG | - | chr2_3:21980429-21980448 | None:intergenic | 50.0% |
| CTCCTAGGCTTGCATACATG+GGG | + | chr2_3:21980460-21980479 | Msa0284130:CDS | 50.0% | |
| TCGGGGAGAATCTAGTGCAT+AGG | - | chr2_3:21980546-21980565 | None:intergenic | 50.0% | |
| CCCGATCAGAGATCAAACGT+TGG | + | chr2_3:21980561-21980580 | Msa0284130:three_prime_UTR | 50.0% | |
| TCTCCTACTTCAGTCGTCAG+AGG | - | chr2_3:21980645-21980664 | None:intergenic | 50.0% | |
| TCTGACGACTGAAGTAGGAG+AGG | + | chr2_3:21980644-21980663 | Msa0284130:three_prime_UTR | 50.0% | |
| TGTCAAGGTGGGGAAGAGCA+AGG | + | chr2_3:21978592-21978611 | Msa0284130:CDS | 55.0% | |
| CGATGACGTGGGTCAATCTG+TGG | - | chr2_3:21978918-21978937 | None:intergenic | 55.0% | |
| TCTTCCAGCAGCTGTGGTTG+CGG | - | chr2_3:21979573-21979592 | None:intergenic | 55.0% | |
| GGCACAACAAGGTGTACTCG+AGG | + | chr2_3:21979598-21979617 | Msa0284130:CDS | 55.0% | |
| TGCAAGTGGTCTACTGGAGC+TGG | + | chr2_3:21980288-21980307 | Msa0284130:CDS | 55.0% | |
| ACTGGAGCTGGACCTCGTAT+TGG | + | chr2_3:21980300-21980319 | Msa0284130:CDS | 55.0% | |
| CTGGAGCTGGACCTCGTATT+GGG | + | chr2_3:21980301-21980320 | Msa0284130:CDS | 55.0% | |
| TCACGCACACACCCAATACG+AGG | - | chr2_3:21980315-21980334 | None:intergenic | 55.0% | |
| GGTCTTGCAGAAGCAGGTCT+AGG | - | chr2_3:21980387-21980406 | None:intergenic | 55.0% | |
| AGCCCCATGTATGCAAGCCT+AGG | - | chr2_3:21980465-21980484 | None:intergenic | 55.0% | |
| GCAATTGGGGTTCTTGGGCT+AGG | - | chr2_3:21980489-21980508 | None:intergenic | 55.0% | |
| TGGCCTCTGACGACTGAAGT+AGG | + | chr2_3:21980639-21980658 | Msa0284130:three_prime_UTR | 55.0% | |
| ! | TGGCGTTGAAGGGTAGCCCT+TGG | - | chr2_3:21979169-21979188 | None:intergenic | 60.0% |
| GGGGCCGCAACCACAGCTGC+TGG | + | chr2_3:21979566-21979585 | Msa0284130:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 21977370 | 21980996 | 21977370 | ID=Msa0284130;Name=Msa0284130 |
| chr2_3 | mRNA | 21977370 | 21980996 | 21977370 | ID=Msa0284130-mRNA-1;Parent=Msa0284130;Name=Msa0284130-mRNA-1;_AED=0.04;_eAED=0.04;_QI=140|1|1|1|0.87|0.77|9|481|508 |
| chr2_3 | exon | 21977370 | 21977443 | 21977370 | ID=Msa0284130-mRNA-1:exon:8568;Parent=Msa0284130-mRNA-1 |
| chr2_3 | exon | 21977707 | 21978167 | 21977707 | ID=Msa0284130-mRNA-1:exon:8569;Parent=Msa0284130-mRNA-1 |
| chr2_3 | exon | 21978515 | 21978629 | 21978515 | ID=Msa0284130-mRNA-1:exon:8570;Parent=Msa0284130-mRNA-1 |
| chr2_3 | exon | 21978737 | 21978802 | 21978737 | ID=Msa0284130-mRNA-1:exon:8571;Parent=Msa0284130-mRNA-1 |
| chr2_3 | exon | 21978921 | 21979009 | 21978921 | ID=Msa0284130-mRNA-1:exon:8572;Parent=Msa0284130-mRNA-1 |
| chr2_3 | exon | 21979123 | 21979210 | 21979123 | ID=Msa0284130-mRNA-1:exon:8573;Parent=Msa0284130-mRNA-1 |
| chr2_3 | exon | 21979389 | 21979619 | 21979389 | ID=Msa0284130-mRNA-1:exon:8574;Parent=Msa0284130-mRNA-1 |
| chr2_3 | exon | 21979882 | 21979983 | 21979882 | ID=Msa0284130-mRNA-1:exon:8575;Parent=Msa0284130-mRNA-1 |
| chr2_3 | exon | 21980075 | 21980996 | 21980075 | ID=Msa0284130-mRNA-1:exon:8576;Parent=Msa0284130-mRNA-1 |
| chr2_3 | five_prime_UTR | 21977370 | 21977443 | 21977370 | ID=Msa0284130-mRNA-1:five_prime_utr;Parent=Msa0284130-mRNA-1 |
| chr2_3 | five_prime_UTR | 21977707 | 21977772 | 21977707 | ID=Msa0284130-mRNA-1:five_prime_utr;Parent=Msa0284130-mRNA-1 |
| chr2_3 | CDS | 21977773 | 21978167 | 21977773 | ID=Msa0284130-mRNA-1:cds;Parent=Msa0284130-mRNA-1 |
| chr2_3 | CDS | 21978515 | 21978629 | 21978515 | ID=Msa0284130-mRNA-1:cds;Parent=Msa0284130-mRNA-1 |
| chr2_3 | CDS | 21978737 | 21978802 | 21978737 | ID=Msa0284130-mRNA-1:cds;Parent=Msa0284130-mRNA-1 |
| chr2_3 | CDS | 21978921 | 21979009 | 21978921 | ID=Msa0284130-mRNA-1:cds;Parent=Msa0284130-mRNA-1 |
| chr2_3 | CDS | 21979123 | 21979210 | 21979123 | ID=Msa0284130-mRNA-1:cds;Parent=Msa0284130-mRNA-1 |
| chr2_3 | CDS | 21979389 | 21979619 | 21979389 | ID=Msa0284130-mRNA-1:cds;Parent=Msa0284130-mRNA-1 |
| chr2_3 | CDS | 21979882 | 21979983 | 21979882 | ID=Msa0284130-mRNA-1:cds;Parent=Msa0284130-mRNA-1 |
| chr2_3 | CDS | 21980075 | 21980515 | 21980075 | ID=Msa0284130-mRNA-1:cds;Parent=Msa0284130-mRNA-1 |
| chr2_3 | three_prime_UTR | 21980516 | 21980996 | 21980516 | ID=Msa0284130-mRNA-1:three_prime_utr;Parent=Msa0284130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
