AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0286470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0286470 MtrunA17_Chr2g0303251 100.000 216 0 0 1 216 1 216 3.41e-155 428
Msa0286470 MtrunA17_Chr1g0183621 73.364 214 53 1 1 214 5 214 2.69e-114 325
Msa0286470 MtrunA17_Chr7g0261511 77.103 214 45 1 1 214 1 210 1.86e-104 300
Msa0286470 MtrunA17_Chr2g0300321 40.909 220 124 1 3 216 4 223 1.04e-41 140
Msa0286470 MtrunA17_Chr8g0343561 43.750 176 99 0 3 178 4 179 1.35e-38 133
Msa0286470 MtrunA17_Chr4g0028231 29.730 222 148 1 1 214 5 226 1.07e-17 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0286470 AT5G44560.1 83.784 222 30 1 1 216 1 222 8.32e-130 365
Msa0286470 AT5G44560.2 83.168 202 28 1 21 216 1 202 2.16e-115 327
Msa0286470 AT5G44560.4 88.764 178 20 0 1 178 1 178 3.65e-114 324
Msa0286470 AT1G03950.1 71.963 214 56 1 1 214 1 210 1.09e-110 316
Msa0286470 AT5G44560.3 84.000 150 24 0 1 150 1 150 3.16e-88 257
Msa0286470 AT2G06530.1 41.518 224 123 2 1 216 2 225 5.24e-44 147
Msa0286470 AT2G06530.2 40.500 200 112 1 24 216 5 204 1.15e-36 127
Msa0286470 AT5G22950.1 32.589 224 141 3 1 214 5 228 1.47e-16 75.9

Find 72 sgRNAs with CRISPR-Local

Find 402 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGTCCAAATTGTGAAAA+TGG 0.145046 2_3:-27593338 Msa0286470:three_prime_UTR
AGACCTTGGGCTTGGGGTTG+GGG 0.152836 2_3:+27600115 None:intergenic
GAGACCTTGGGCTTGGGGTT+GGG 0.198919 2_3:+27600114 None:intergenic
TGACAGGTTCTTGATGAAAT+TGG 0.228952 2_3:-27594231 Msa0286470:intron
CCTCTGCTTGAATTAGGTTT+TGG 0.244938 2_3:-27599965 Msa0286470:five_prime_UTR
TAACATCCTCTGCTTGAATT+AGG 0.247251 2_3:-27599971 Msa0286470:five_prime_UTR
CATTGCCACCATTGCTTTAG+TGG 0.261194 2_3:+27596348 None:intergenic
CCAGTTGTGCTGATTGCTTT+TGG 0.285128 2_3:+27595740 None:intergenic
AATTCTGCGTTTGTTTGTTT+AGG 0.295849 2_3:-27593571 Msa0286470:three_prime_UTR
AGAGACCTTGGGCTTGGGGT+TGG 0.320479 2_3:+27600113 None:intergenic
TTTCAAGTTCTTCAACATCT+TGG 0.321093 2_3:+27593785 None:intergenic
AGAGGAGAGACCTTGGGCTT+GGG 0.323762 2_3:+27600108 None:intergenic
ATCACTTTAGCCTGCTTTGC+CGG 0.327935 2_3:+27595772 None:intergenic
CAACAATAAGATTGTATTAT+CGG 0.338889 2_3:-27593683 Msa0286470:three_prime_UTR
AGCAATGGTGGCAATGAATA+AGG 0.349876 2_3:-27596341 Msa0286470:intron
TTCAAGTTCTTCAACATCTT+GGG 0.356079 2_3:+27593786 None:intergenic
GCCACTTGAAACATTTAGTT+AGG 0.365262 2_3:+27593518 None:intergenic
AGGGAAGTCGTGCACAGATC+AGG 0.381377 2_3:-27596514 Msa0286470:CDS
CTTGAAGCAATCCGACCTTT+CGG 0.382816 2_3:+27593938 None:intergenic
GAGAGGAGAGACCTTGGGCT+TGG 0.393827 2_3:+27600107 None:intergenic
TGAAGAACTTGAAAAGAGAT+TGG 0.400428 2_3:-27593776 Msa0286470:CDS
TCCTGGCTCGGCAGCTAGTT+AGG 0.403556 2_3:-27596562 Msa0286470:CDS
GGGAGCGTGCTGTGTATTGT+TGG 0.408033 2_3:+27600135 None:intergenic
CCAAAAGCAATCAGCACAAC+TGG 0.415296 2_3:-27595740 Msa0286470:CDS
GCAAGCACTTCAATCTCTAC+AGG 0.426499 2_3:-27596382 Msa0286470:CDS
AGAGAATTTATTTGCAGCTA+AGG 0.435040 2_3:-27593377 Msa0286470:three_prime_UTR
CGAAAGGTCGGATTGCTTCA+AGG 0.442942 2_3:-27593937 Msa0286470:CDS
TTCAATCTCTACAGGGATGA+AGG 0.458265 2_3:-27596374 Msa0286470:CDS
GTACCGCGGGCACCTGCATA+AGG 0.463608 2_3:-27593432 Msa0286470:three_prime_UTR
TGGAGTGGATATTGCATCCC+AGG 0.474380 2_3:-27594211 Msa0286470:intron
ACTGTCCAAATTGTGAAAAT+GGG 0.474853 2_3:-27593337 None:intergenic
ACCTAACTAGCTGCCGAGCC+AGG 0.485867 2_3:+27596561 None:intergenic
GAGGAGAGACCTTGGGCTTG+GGG 0.485952 2_3:+27600109 None:intergenic
TAGATATAAAGTATAGTTGT+GGG 0.487913 2_3:-27593626 Msa0286470:three_prime_UTR
GCAAATGGCACCGGCAAAGC+AGG 0.491669 2_3:-27595782 Msa0286470:CDS
CCTGCAGATTAGTTATCTGT+TGG 0.504006 2_3:+27596534 None:intergenic
CCAACAGATAACTAATCTGC+AGG 0.509427 2_3:-27596534 Msa0286470:CDS
GGGAAGTCGTGCACAGATCA+GGG 0.524632 2_3:-27596513 Msa0286470:CDS
AGAGATAGCATCACTTCAGA+TGG 0.527919 2_3:-27598804 Msa0286470:CDS
ACAGGCTTCTACTAAAATCC+TGG 0.535270 2_3:-27596579 Msa0286470:intron
GATGAACGAACCTTTGGGTG+TGG 0.536552 2_3:+27599908 None:intergenic
ATCTTCTCAGCAAATGGCAC+CGG 0.537436 2_3:-27595791 Msa0286470:intron
AGTTGCAGAGATTAAAAGAG+AGG 0.544597 2_3:-27598681 Msa0286470:CDS
GGAGCGTGCTGTGTATTGTT+GGG 0.558441 2_3:+27600136 None:intergenic
GAAATGTCTGTTGCAACTAG+AGG 0.569526 2_3:-27599719 Msa0286470:intron
TGATCTCATACACCTTATGC+AGG 0.569604 2_3:+27593420 None:intergenic
TTAGATATAAAGTATAGTTG+TGG 0.569645 2_3:-27593627 Msa0286470:three_prime_UTR
AATATAATCAGTAACAAATG+AGG 0.572412 2_3:+27593658 None:intergenic
TCAATCTCTACAGGGATGAA+GGG 0.583879 2_3:-27596373 Msa0286470:CDS
TATCTTCTGCTCCGAAAGGT+CGG 0.586806 2_3:-27593949 Msa0286470:CDS
TGGCAGTCAATATGCTACTT+CGG 0.587003 2_3:-27593499 Msa0286470:three_prime_UTR
TCCTAACTAAATGTTTCAAG+TGG 0.596759 2_3:-27593519 Msa0286470:three_prime_UTR
CTTCTACTAAAATCCTGGCT+CGG 0.598970 2_3:-27596574 Msa0286470:CDS
GGTTCTTGATGAAATTGGAG+TGG 0.601589 2_3:-27594226 Msa0286470:CDS
GCTCCCCAACCCCAAGCCCA+AGG 0.601725 2_3:-27600118 Msa0286470:intron
ATGCTGAAAATGCTGCTCCA+AGG 0.612137 2_3:-27593913 Msa0286470:intron
CAAGCACTTCAATCTCTACA+GGG 0.614124 2_3:-27596381 Msa0286470:CDS
GATAGCATCACTTCAGATGG+AGG 0.618277 2_3:-27598801 Msa0286470:intron
CCAAAACCTAATTCAAGCAG+AGG 0.619372 2_3:+27599965 None:intergenic
ATCAGCACAACTGGACATGA+CGG 0.620669 2_3:-27595731 Msa0286470:intron
AAGAAGAAAACCACACCCAA+AGG 0.621044 2_3:-27599918 Msa0286470:intron
GGGTGCCACTAAAGCAATGG+TGG 0.624027 2_3:-27596353 Msa0286470:CDS
GAAGGGTGCCACTAAAGCAA+TGG 0.625367 2_3:-27596356 Msa0286470:CDS
AGTCAATATGCTACTTCGGT+CGG 0.627899 2_3:-27593495 Msa0286470:three_prime_UTR
ATCAGAAGAACTCACTAACC+AGG 0.628471 2_3:-27594347 Msa0286470:intron
ACACCTTATGCAGGTGCCCG+CGG 0.629981 2_3:+27593429 None:intergenic
TAGTTATCTTCTGCTCCGAA+AGG 0.634306 2_3:-27593953 Msa0286470:CDS
TTTAGACAAAGATGAAGCTG+AGG 0.636787 2_3:-27594374 Msa0286470:CDS
ATAAGGTGTATGAGATCACA+TGG 0.652977 2_3:-27593415 Msa0286470:three_prime_UTR
GGAAGTCGTGCACAGATCAG+GGG 0.664483 2_3:-27596512 Msa0286470:CDS
GGGTGTAGCAACTCACACAC+AGG 0.671175 2_3:-27596492 Msa0286470:intron
CAACAGATAACTAATCTGCA+GGG 0.676896 2_3:-27596533 Msa0286470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCATATATAAAATCAAA+TGG + chr2_3:27593894-27593913 None:intergenic 10.0%
!!! TTTTTATTTAGATGTATATT+TGG - chr2_3:27594879-27594898 Msa0286470:intron 10.0%
!!! TTTTATTTAGATGTATATTT+GGG - chr2_3:27594880-27594899 Msa0286470:intron 10.0%
!!! AACTTTTATGAAAATTTTTA+CGG - chr2_3:27597978-27597997 Msa0286470:intron 10.0%
!!! TTAATTACTTTTATGAATAT+TGG - chr2_3:27599480-27599499 Msa0286470:intron 10.0%
!!! TAATTACTTTTATGAATATT+GGG - chr2_3:27599481-27599500 Msa0286470:intron 10.0%
!!! TTTTTTTTTCCTTTCTAAAT+AGG - chr2_3:27593944-27593963 Msa0286470:CDS 15.0%
!!! TAATTTTTTCCTATTTAGAA+AGG + chr2_3:27593956-27593975 None:intergenic 15.0%
!!! CATTATTTTAAGGTATTATA+AGG + chr2_3:27593979-27593998 None:intergenic 15.0%
!!! CTTTAACTGTTTTTTTTTAA+TGG + chr2_3:27594330-27594349 None:intergenic 15.0%
!! CATTAAAAAAAAACAGTTAA+AGG - chr2_3:27594328-27594347 Msa0286470:intron 15.0%
!! ATGATAAATATTTGTATGTT+TGG + chr2_3:27595087-27595106 None:intergenic 15.0%
!! TAAATAAATAGATTTCTAAC+TGG + chr2_3:27596611-27596630 None:intergenic 15.0%
!!! CAATTATTAGTCTTTTTTTT+TGG - chr2_3:27597916-27597935 Msa0286470:intron 15.0%
!! ATATATATAATCTAATGCTA+TGG + chr2_3:27598933-27598952 None:intergenic 15.0%
!! AAATATTTGTATGTTTGGAT+TGG + chr2_3:27595082-27595101 None:intergenic 20.0%
!! ACTATAGTTAAAGATTGTAT+TGG + chr2_3:27595357-27595376 None:intergenic 20.0%
!! GATCGTTTAAATACAAAAAT+TGG + chr2_3:27595413-27595432 None:intergenic 20.0%
!! AAAAATTGAATTTCAAGCTA+TGG + chr2_3:27595777-27595796 None:intergenic 20.0%
!! TCATTATCAATATTCATGAA+TGG + chr2_3:27596012-27596031 None:intergenic 20.0%
!! ATTTAGAGGAGAATTATATA+GGG + chr2_3:27596378-27596397 None:intergenic 20.0%
!!! TAATGATTTCTTTTTGCAAA+AGG + chr2_3:27596568-27596587 None:intergenic 20.0%
!!! TACATTGTTGTCTTTATTTT+TGG - chr2_3:27596672-27596691 Msa0286470:intron 20.0%
!!! AATTTCCAAATTTCTTTTGT+AGG - chr2_3:27597071-27597090 Msa0286470:intron 20.0%
!!! AATGAATAAGGTATATTTTC+TGG - chr2_3:27597155-27597174 Msa0286470:intron 20.0%
!!! ATGAATAAGGTATATTTTCT+GGG - chr2_3:27597156-27597175 Msa0286470:intron 20.0%
!! TTAAGTTACTCTTAACATAT+GGG + chr2_3:27597336-27597355 None:intergenic 20.0%
!!! CTTTTAGTATTTTTTTGAGA+GGG - chr2_3:27597840-27597859 Msa0286470:intron 20.0%
!! ATAAACTAGGAGTTAAATAA+AGG - chr2_3:27598108-27598127 Msa0286470:intron 20.0%
!! AATAATGAAATTGAAGAGTA+TGG - chr2_3:27598164-27598183 Msa0286470:intron 20.0%
!!! ATAATGAAATTGAAGAGTAT+GGG - chr2_3:27598165-27598184 Msa0286470:intron 20.0%
!! TGTAAGAACTAAAATAAGTA+AGG - chr2_3:27598480-27598499 Msa0286470:intron 20.0%
!! GTAAGAACTAAAATAAGTAA+GGG - chr2_3:27598481-27598500 Msa0286470:intron 20.0%
!!! CGGATAACATTATAAAATTT+TGG + chr2_3:27598965-27598984 None:intergenic 20.0%
!! GACTAACATAATGAAATATT+GGG + chr2_3:27599310-27599329 None:intergenic 20.0%
!! TGACTAACATAATGAAATAT+TGG + chr2_3:27599311-27599330 None:intergenic 20.0%
!! AATAAGATTGAAATATACCT+TGG + chr2_3:27599591-27599610 None:intergenic 20.0%
!! GTATATTTCAATCTTATTCA+TGG - chr2_3:27599593-27599612 Msa0286470:intron 20.0%
!! CAACAATAAGATTGTATTAT+CGG - chr2_3:27599801-27599820 Msa0286470:intron 20.0%
!! AATATAATCAGTAACAAATG+AGG + chr2_3:27599829-27599848 None:intergenic 20.0%
!! TTAGATATAAAGTATAGTTG+TGG - chr2_3:27599857-27599876 Msa0286470:intron 20.0%
!! TAGATATAAAGTATAGTTGT+GGG - chr2_3:27599858-27599877 Msa0286470:intron 20.0%
! AAAAAAGTAATGTAAGAGAG+AGG + chr2_3:27593397-27593416 None:intergenic 25.0%
! ACAGAAAATCGTAAGATTTA+GGG + chr2_3:27593619-27593638 None:intergenic 25.0%
! ATCAATTGCTAGAATAGAAA+AGG - chr2_3:27593913-27593932 Msa0286470:intron 25.0%
!! TATAAGCTATGAAGCATTTA+CGG + chr2_3:27594127-27594146 None:intergenic 25.0%
!! TGATTTGAGTTAATGGTTAA+AGG - chr2_3:27594232-27594251 Msa0286470:intron 25.0%
! GAGAAATAAGAAAGAACAAA+AGG + chr2_3:27594563-27594582 None:intergenic 25.0%
! ATAACTTCTTTCTTTCTTGT+AGG - chr2_3:27594648-27594667 Msa0286470:intron 25.0%
! CATCAAATAAAAGGTGATAA+AGG + chr2_3:27595214-27595233 None:intergenic 25.0%
! ACAACACTTCATCAAATAAA+AGG + chr2_3:27595223-27595242 None:intergenic 25.0%
! AAAAATTGGATTTCAAGCTA+TGG + chr2_3:27595399-27595418 None:intergenic 25.0%
! ATAAAGGTCTGATTACTAAA+CGG + chr2_3:27595198-27595217 None:intergenic 25.0%
! TCTTAAGGACACAATAAATT+GGG + chr2_3:27596090-27596109 None:intergenic 25.0%
! TTCTTAAGGACACAATAAAT+TGG + chr2_3:27596091-27596110 None:intergenic 25.0%
!! ACATGTTCTTGATTTTCTTA+AGG + chr2_3:27596105-27596124 None:intergenic 25.0%
! GATTTAGAGGAGAATTATAT+AGG + chr2_3:27596379-27596398 None:intergenic 25.0%
!! ATATTCAAAGCATTTCTTCA+TGG + chr2_3:27596403-27596422 None:intergenic 25.0%
!! GTTTCTTTTTACAACTAGTT+TGG - chr2_3:27596521-27596540 Msa0286470:CDS 25.0%
!! GGATGTTTATGATTGTTATT+AGG + chr2_3:27596547-27596566 None:intergenic 25.0%
! CAAAAAGAAATCATTATGCT+AGG - chr2_3:27596572-27596591 Msa0286470:CDS 25.0%
! TAAATAGATTTCTAACTGGA+CGG + chr2_3:27596607-27596626 None:intergenic 25.0%
!!! TGTCTTTATTTTTGGTTGAA+TGG - chr2_3:27596680-27596699 Msa0286470:intron 25.0%
!!! TTTATTTTTGGTTGAATGGA+GGG - chr2_3:27596684-27596703 Msa0286470:intron 25.0%
!! AAAATTCTTCTTTCTTTTCG+AGG - chr2_3:27597024-27597043 Msa0286470:intron 25.0%
!! AAATTCTTCTTTCTTTTCGA+GGG - chr2_3:27597025-27597044 Msa0286470:intron 25.0%
! TAATGCCTACAAAAGAAATT+TGG + chr2_3:27597079-27597098 None:intergenic 25.0%
!! CTTTCCATTGTTCAAAATTT+TGG - chr2_3:27597188-27597207 Msa0286470:intron 25.0%
!! TAGTCCAAAATTTTGAACAA+TGG + chr2_3:27597195-27597214 None:intergenic 25.0%
! AAGAGTAACTTAACTTTCAT+AGG - chr2_3:27597343-27597362 Msa0286470:intron 25.0%
! ATATTTATGATTTCCATCCA+TGG - chr2_3:27597387-27597406 Msa0286470:intron 25.0%
! GTTAAGTTACTCTTAACATA+TGG + chr2_3:27597337-27597356 None:intergenic 25.0%
! AAGAGTAACTTAACTTTCAT+AGG - chr2_3:27597343-27597362 Msa0286470:intron 25.0%
! ATATTTATGATTTCCATCCA+TGG - chr2_3:27597387-27597406 Msa0286470:intron 25.0%
!!! GCTTTTAGTATTTTTTTGAG+AGG - chr2_3:27597839-27597858 Msa0286470:intron 25.0%
! AGACTAATAATTGTTCATTG+TGG + chr2_3:27597909-27597928 None:intergenic 25.0%
! GTGCTTACTTAATAGAAATT+TGG - chr2_3:27598032-27598051 Msa0286470:intron 25.0%
!! TAATGAAATTGAAGAGTATG+GGG - chr2_3:27598166-27598185 Msa0286470:intron 25.0%
!!! ACAAATACTTTTGAAGATTG+TGG - chr2_3:27598377-27598396 Msa0286470:intron 25.0%
!!! CAAATACTTTTGAAGATTGT+GGG - chr2_3:27598378-27598397 Msa0286470:intron 25.0%
! ACATACTTTAAACTACCAAA+AGG - chr2_3:27598536-27598555 Msa0286470:intron 25.0%
! CATACTTTAAACTACCAAAA+GGG - chr2_3:27598537-27598556 Msa0286470:intron 25.0%
! ATACTTTAAACTACCAAAAG+GGG - chr2_3:27598538-27598557 Msa0286470:intron 25.0%
! CAGAAAATATTGATGAAACT+TGG - chr2_3:27599006-27599025 Msa0286470:intron 25.0%
! TTTCGGATAACATAAATTGT+TGG + chr2_3:27599053-27599072 None:intergenic 25.0%
!! GATTTTCATTTATTCATGAC+AGG - chr2_3:27599237-27599256 Msa0286470:intron 25.0%
!!! ATTCTGTTTTTCTCTTCTTA+TGG - chr2_3:27599508-27599527 Msa0286470:intron 25.0%
CACAGAAAATCGTAAGATTT+AGG + chr2_3:27593620-27593639 None:intergenic 30.0%
GCTTCATAGCTTATAATGTT+TGG - chr2_3:27594132-27594151 Msa0286470:intron 30.0%
! TAGCTTATAATGTTTGGAGT+TGG - chr2_3:27594138-27594157 Msa0286470:intron 30.0%
ATCAAATAGTAGAAGGTGAA+GGG - chr2_3:27594176-27594195 Msa0286470:intron 30.0%
GAGTTAATGGTTAAAGGATT+TGG - chr2_3:27594238-27594257 Msa0286470:intron 30.0%
TTAATGGTTAAAGGATTTGG+AGG - chr2_3:27594241-27594260 Msa0286470:intron 30.0%
TATGAGTTAGCAAAGCTTTA+TGG - chr2_3:27594371-27594390 Msa0286470:CDS 30.0%
TTGTATGAAGAAAACTCCAA+GGG + chr2_3:27594492-27594511 None:intergenic 30.0%
ATTGTATGAAGAAAACTCCA+AGG + chr2_3:27594493-27594512 None:intergenic 30.0%
ATTAAAAGAGAGGCAAAAAC+TGG - chr2_3:27594813-27594832 Msa0286470:intron 30.0%
GAATAAGTGTATGTTTGATC+TGG - chr2_3:27595001-27595020 Msa0286470:intron 30.0%
AAAGCAGTTTCAAGATCTTA+TGG + chr2_3:27595121-27595140 None:intergenic 30.0%
TTACTAAATGTGTGTTCCTT+TGG + chr2_3:27595186-27595205 None:intergenic 30.0%
AGAAGTTTCGTATTTAGTTG+AGG - chr2_3:27595327-27595346 Msa0286470:intron 30.0%
TAAAGGTCTGATTACTAAAC+GGG + chr2_3:27595577-27595596 None:intergenic 30.0%
CATCAAACAAAAGGTGATAA+AGG + chr2_3:27595594-27595613 None:intergenic 30.0%
ACTATAGTTGAAGGTTGTAT+TGG + chr2_3:27595735-27595754 None:intergenic 30.0%
ATGTCAGTAACTATAGTTGA+AGG + chr2_3:27595744-27595763 None:intergenic 30.0%
TAGCACATTAAGTCAAGAAT+GGG + chr2_3:27595959-27595978 None:intergenic 30.0%
TTAGCACATTAAGTCAAGAA+TGG + chr2_3:27595960-27595979 None:intergenic 30.0%
AATCAAGAACATGTTTGCTT+TGG - chr2_3:27596111-27596130 Msa0286470:intron 30.0%
ATCAAGAACATGTTTGCTTT+GGG - chr2_3:27596112-27596131 Msa0286470:intron 30.0%
AAAGCTAAAATGCTTGTAGT+TGG + chr2_3:27596170-27596189 None:intergenic 30.0%
! AACAATTGACTTTGACACAA+AGG + chr2_3:27596200-27596219 None:intergenic 30.0%
TTTGTGTCAAAGTCAATTGT+TGG - chr2_3:27596199-27596218 Msa0286470:intron 30.0%
ATTTCTTCATGGAGATTTAG+AGG + chr2_3:27596392-27596411 None:intergenic 30.0%
AATTACAAGCAAGAAAGAGT+AGG - chr2_3:27596462-27596481 Msa0286470:intron 30.0%
AAAAGAAACATTTACACCAG+TGG + chr2_3:27596510-27596529 None:intergenic 30.0%
AAAGAAATCATTATGCTAGG+CGG - chr2_3:27596575-27596594 Msa0286470:CDS 30.0%
!!! CTTTATTTTTGGTTGAATGG+AGG - chr2_3:27596683-27596702 Msa0286470:intron 30.0%
ATTTAATAGTGCTTCCAGTT+GGG + chr2_3:27596801-27596820 None:intergenic 30.0%
AATTTAATAGTGCTTCCAGT+TGG + chr2_3:27596802-27596821 None:intergenic 30.0%
! TTGCTAAATAATGAAGTGTC+TGG - chr2_3:27596880-27596899 Msa0286470:intron 30.0%
TTGTATTGAAGTGTAAACCA+TGG + chr2_3:27597407-27597426 None:intergenic 30.0%
GGAAATGTTTGACAAAAAAC+TGG - chr2_3:27597482-27597501 Msa0286470:intron 30.0%
TTGTATTGAAGTGTAAACCA+TGG + chr2_3:27597407-27597426 None:intergenic 30.0%
ACTTTAGATTCAATGCAAAC+AGG + chr2_3:27597579-27597598 None:intergenic 30.0%
! TAATGTGTTAGATGCTTTTC+TGG - chr2_3:27597602-27597621 Msa0286470:intron 30.0%
!!! TTAGTATTTTTTTGAGAGGG+AGG - chr2_3:27597843-27597862 Msa0286470:intron 30.0%
! CCTTCAATTAGTTCTTTATC+TGG + chr2_3:27598081-27598100 None:intergenic 30.0%
CCAGATAAAGAACTAATTGA+AGG - chr2_3:27598078-27598097 Msa0286470:intron 30.0%
TGAAGGAACAACAATAAACT+AGG - chr2_3:27598095-27598114 Msa0286470:intron 30.0%
AAGAGAGAAAAAAACACAGA+AGG - chr2_3:27598332-27598351 Msa0286470:intron 30.0%
! TTAGTTCTTACACTTACGTT+TGG + chr2_3:27598472-27598491 None:intergenic 30.0%
ATTACACATGTCAATTAGCT+TGG - chr2_3:27598835-27598854 Msa0286470:intron 30.0%
ATATAATCTAATGCTATGGC+TGG + chr2_3:27598929-27598948 None:intergenic 30.0%
GTCATTTATGTATATGTACC+TGG + chr2_3:27599158-27599177 None:intergenic 30.0%
ATGAAAATCAGATATGACAG+AGG + chr2_3:27599226-27599245 None:intergenic 30.0%
AAGAAGAGAAAAACAGAATC+AGG + chr2_3:27599507-27599526 None:intergenic 30.0%
! TTCAAGTTCTTCAACATCTT+GGG + chr2_3:27599701-27599720 None:intergenic 30.0%
!! TTTCAAGTTCTTCAACATCT+TGG + chr2_3:27599702-27599721 None:intergenic 30.0%
TGAAGAACTTGAAAAGAGAT+TGG - chr2_3:27599708-27599727 Msa0286470:intron 30.0%
AATTCTGCGTTTGTTTGTTT+AGG - chr2_3:27599913-27599932 Msa0286470:intron 30.0%
TCCTAACTAAATGTTTCAAG+TGG - chr2_3:27599965-27599984 Msa0286470:five_prime_UTR 30.0%
AGAGAATTTATTTGCAGCTA+AGG - chr2_3:27600107-27600126 Msa0286470:intron 30.0%
TAACATCCTCTGCTTGAATT+AGG - chr2_3:27593513-27593532 Msa0286470:three_prime_UTR 35.0%
CTTGAATGTAACCAATGTGT+CGG + chr2_3:27594061-27594080 None:intergenic 35.0%
CCAAATTATTACCGTGTTGA+CGG - chr2_3:27594093-27594112 Msa0286470:intron 35.0%
AGTTGCGATCAAATAGTAGA+AGG - chr2_3:27594169-27594188 Msa0286470:intron 35.0%
GATCAAATAGTAGAAGGTGA+AGG - chr2_3:27594175-27594194 Msa0286470:intron 35.0%
! GCTCATCTGATTTGAGTTAA+TGG - chr2_3:27594225-27594244 Msa0286470:CDS 35.0%
GACATTGATAGAAGTTAGCA+AGG - chr2_3:27594597-27594616 Msa0286470:intron 35.0%
AGTTGCAGAGATTAAAAGAG+AGG - chr2_3:27594803-27594822 Msa0286470:intron 35.0%
! TTGGGTGTTTTCATCTTAAC+TGG - chr2_3:27594898-27594917 Msa0286470:intron 35.0%
! TGGGTGTTTTCATCTTAACT+GGG - chr2_3:27594899-27594918 Msa0286470:intron 35.0%
TTCATCTTAACTGGGATCAA+AGG - chr2_3:27594907-27594926 Msa0286470:intron 35.0%
CGATGAGTTTGACAAAATCA+CGG + chr2_3:27595059-27595078 None:intergenic 35.0%
!! ACATCAATTGGTAGCTTTGT+TGG + chr2_3:27595163-27595182 None:intergenic 35.0%
! AGATTATGAGCATTGCCAAT+AGG - chr2_3:27595277-27595296 Msa0286470:intron 35.0%
TGTAAAAACTTTGTTGCCTC+TGG + chr2_3:27595460-27595479 None:intergenic 35.0%
ACGACACTTCATCAAACAAA+AGG + chr2_3:27595603-27595622 None:intergenic 35.0%
AGAAGCTCCATATTTAGTTG+AGG - chr2_3:27595705-27595724 Msa0286470:intron 35.0%
TAGTTGAAGGTTGTATTGGA+TGG + chr2_3:27595731-27595750 None:intergenic 35.0%
! CAAGTACGTATAAGAGTATG+AGG - chr2_3:27595856-27595875 Msa0286470:intron 35.0%
!! TAGAGGGAATTTTCTAGAAG+TGG + chr2_3:27595936-27595955 None:intergenic 35.0%
TTAAGTCAAGAATGGGTAGA+GGG + chr2_3:27595952-27595971 None:intergenic 35.0%
ATTAAGTCAAGAATGGGTAG+AGG + chr2_3:27595953-27595972 None:intergenic 35.0%
TCCTTTATTGCTTGTACTCT+TGG - chr2_3:27595986-27596005 Msa0286470:intron 35.0%
! ACACAATAAATTGGGTTGCA+AGG + chr2_3:27596082-27596101 None:intergenic 35.0%
ACATTACAACTGCAACAGTT+GGG + chr2_3:27596754-27596773 None:intergenic 35.0%
TACATTACAACTGCAACAGT+TGG + chr2_3:27596755-27596774 None:intergenic 35.0%
TCATGCATTCCAAATCAGTT+CGG + chr2_3:27596844-27596863 None:intergenic 35.0%
! ATAATGAAGTGTCTGGTTAC+AGG - chr2_3:27596887-27596906 Msa0286470:intron 35.0%
CAACAGATAACTAATCTGCA+GGG - chr2_3:27596951-27596970 Msa0286470:intron 35.0%
AGAATCAGTTTATGACCCAA+AGG - chr2_3:27597250-27597269 Msa0286470:intron 35.0%
GAATCAGTTTATGACCCAAA+GGG - chr2_3:27597251-27597270 Msa0286470:intron 35.0%
TTTGTTTGCTTCTTTGGCAA+AGG + chr2_3:27597304-27597323 None:intergenic 35.0%
!! TGTTGCTTTGTTTGCTTCTT+TGG + chr2_3:27597310-27597329 None:intergenic 35.0%
ATTGAAGTGTAAACCATGGA+TGG + chr2_3:27597403-27597422 None:intergenic 35.0%
ATTGAAGTGTAAACCATGGA+TGG + chr2_3:27597403-27597422 None:intergenic 35.0%
! ATTTGCTGAGAAGATAAGCA+AGG + chr2_3:27597688-27597707 None:intergenic 35.0%
TTGCTTATCTTCTCAGCAAA+TGG - chr2_3:27597687-27597706 Msa0286470:intron 35.0%
TATTAAGTAAGCACCACCTT+TGG + chr2_3:27598026-27598045 None:intergenic 35.0%
TTGTGAAACTGTCATCAAGA+TGG - chr2_3:27598200-27598219 Msa0286470:intron 35.0%
ACTATACTGAAGACGATAGT+GGG - chr2_3:27598265-27598284 Msa0286470:intron 35.0%
TCAGAATATTGCTATGACGT+GGG - chr2_3:27598504-27598523 Msa0286470:intron 35.0%
TTCTAGCAAAAGCAAGGTAA+TGG - chr2_3:27598630-27598649 Msa0286470:intron 35.0%
TTCTAGCAAAAGCAAGGTAT+TGG - chr2_3:27598723-27598742 Msa0286470:intron 35.0%
CATCATCTCAATCTGCATTT+CGG + chr2_3:27599070-27599089 None:intergenic 35.0%
TTTAGACAAAGATGAAGCTG+AGG - chr2_3:27599110-27599129 Msa0286470:intron 35.0%
TGACAGGTTCTTGATGAAAT+TGG - chr2_3:27599253-27599272 Msa0286470:intron 35.0%
! AAATCACGTGTTTTCACACA+AGG - chr2_3:27599345-27599364 Msa0286470:intron 35.0%
CGAATTGTTAGTTCATAGCA+TGG - chr2_3:27599378-27599397 Msa0286470:intron 35.0%
GCCACTTGAAACATTTAGTT+AGG + chr2_3:27599969-27599988 None:intergenic 35.0%
! GTTGAATTTTATCTGTACCG+CGG - chr2_3:27600038-27600057 Msa0286470:intron 35.0%
! TTGAATTTTATCTGTACCGC+GGG - chr2_3:27600039-27600058 Msa0286470:intron 35.0%
ATAAGGTGTATGAGATCACA+TGG - chr2_3:27600069-27600088 Msa0286470:intron 35.0%
CCAAAACCTAATTCAAGCAG+AGG + chr2_3:27593522-27593541 None:intergenic 40.0%
! CCTCTGCTTGAATTAGGTTT+TGG - chr2_3:27593519-27593538 Msa0286470:three_prime_UTR 40.0%
AAGAAGAAAACCACACCCAA+AGG - chr2_3:27593566-27593585 Msa0286470:three_prime_UTR 40.0%
AGAGAGATGAACGAACCTTT+GGG + chr2_3:27593584-27593603 None:intergenic 40.0%
AAGAGAGATGAACGAACCTT+TGG + chr2_3:27593585-27593604 None:intergenic 40.0%
GAAATGTCTGTTGCAACTAG+AGG - chr2_3:27593765-27593784 Msa0286470:CDS 40.0%
CCGTCAACACGGTAATAATT+TGG + chr2_3:27594096-27594115 None:intergenic 40.0%
AAATAGTAGAAGGTGAAGGG+TGG - chr2_3:27594179-27594198 Msa0286470:intron 40.0%
AATAGTAGAAGGTGAAGGGT+GGG - chr2_3:27594180-27594199 Msa0286470:intron 40.0%
TTAAAGGATTTGGAGGTCCT+TGG - chr2_3:27594248-27594267 Msa0286470:intron 40.0%
! AGCTTTATGGCACTCACAAA+TGG - chr2_3:27594384-27594403 Msa0286470:CDS 40.0%
TTTACATTTACCTCCCTCCA+AGG - chr2_3:27594408-27594427 Msa0286470:CDS 40.0%
TTACATTTACCTCCCTCCAA+GGG - chr2_3:27594409-27594428 Msa0286470:CDS 40.0%
TGAAGAAAACTCCAAGGGTT+TGG + chr2_3:27594487-27594506 None:intergenic 40.0%
AGAGATAGCATCACTTCAGA+TGG - chr2_3:27594680-27594699 Msa0286470:intron 40.0%
CAAGGCAGTTAAGCACTAAA+AGG + chr2_3:27594762-27594781 None:intergenic 40.0%
! GCAACTAACTTCTTTTCCTG+CGG + chr2_3:27594789-27594808 None:intergenic 40.0%
AGAGGCAAAAACTGGAAATG+AGG - chr2_3:27594821-27594840 Msa0286470:intron 40.0%
TGTTTGATCTGGCAGTTGAA+TGG - chr2_3:27595012-27595031 Msa0286470:intron 40.0%
GTTTGACAAAATCACGGTGT+GGG + chr2_3:27595053-27595072 None:intergenic 40.0%
AGTTTGACAAAATCACGGTG+TGG + chr2_3:27595054-27595073 None:intergenic 40.0%
!! TTGGTAGCTTTGTTGGTTAC+AGG + chr2_3:27595156-27595175 None:intergenic 40.0%
AGCTACCAATTGATGTCCAA+AGG - chr2_3:27595167-27595186 Msa0286470:intron 40.0%
GTGTTCCTTTGGACATCAAT+TGG + chr2_3:27595175-27595194 None:intergenic 40.0%
! TTATGAGCATTGCCAATAGG+CGG - chr2_3:27595280-27595299 Msa0286470:intron 40.0%
!!! ATTGCCAATAGGCGGTTTTT+TGG - chr2_3:27595288-27595307 Msa0286470:intron 40.0%
! CAAGTGCGTATAAGAGTATG+AGG - chr2_3:27595480-27595499 Msa0286470:intron 40.0%
ATGCAGTATCAGTCATCGAT+TGG + chr2_3:27595513-27595532 None:intergenic 40.0%
TCTGATTACTAAACGGGTAG+GGG + chr2_3:27595571-27595590 None:intergenic 40.0%
GTCTGATTACTAAACGGGTA+GGG + chr2_3:27595572-27595591 None:intergenic 40.0%
! AGATTATGAGCATTGCCAGT+AGG - chr2_3:27595656-27595675 Msa0286470:intron 40.0%
TGGATGGCCTCAACTAAATA+TGG + chr2_3:27595715-27595734 None:intergenic 40.0%
GAATTTCAAGCTATGGCTCA+AGG + chr2_3:27595770-27595789 None:intergenic 40.0%
GTTCAGTTTCTTACTACTCC+AGG - chr2_3:27595817-27595836 Msa0286470:intron 40.0%
ATGCAGTATTAGTCACCGAT+TGG + chr2_3:27595889-27595908 None:intergenic 40.0%
!! GGGAATTTTCTAGAAGTGGT+GGG + chr2_3:27595932-27595951 None:intergenic 40.0%
!! AGGGAATTTTCTAGAAGTGG+TGG + chr2_3:27595933-27595952 None:intergenic 40.0%
! GCCAAGAGTACAAGCAATAA+AGG + chr2_3:27595990-27596009 None:intergenic 40.0%
!! GTTTGCTTTGGGAAATGAAG+AGG - chr2_3:27596123-27596142 Msa0286470:intron 40.0%
TATGTTGAGACGTCTGTTGA+AGG + chr2_3:27596230-27596249 None:intergenic 40.0%
GAATAAGAGGTCCTTAGTTG+AGG + chr2_3:27596346-27596365 None:intergenic 40.0%
AGGGATTCTGCTTGAATAAG+AGG + chr2_3:27596359-27596378 None:intergenic 40.0%
AAACATTTACACCAGTGGCA+AGG + chr2_3:27596505-27596524 None:intergenic 40.0%
TGTGTGTATCCGAACTGATT+TGG - chr2_3:27596832-27596851 Msa0286470:intron 40.0%
ACAGGCTTCTACTAAAATCC+TGG - chr2_3:27596905-27596924 Msa0286470:intron 40.0%
CTTCTACTAAAATCCTGGCT+CGG - chr2_3:27596910-27596929 Msa0286470:intron 40.0%
! CCTGCAGATTAGTTATCTGT+TGG + chr2_3:27596953-27596972 None:intergenic 40.0%
CCAACAGATAACTAATCTGC+AGG - chr2_3:27596950-27596969 Msa0286470:intron 40.0%
CAAGCACTTCAATCTCTACA+GGG - chr2_3:27597103-27597122 Msa0286470:intron 40.0%
TTCAATCTCTACAGGGATGA+AGG - chr2_3:27597110-27597129 Msa0286470:intron 40.0%
TCAATCTCTACAGGGATGAA+GGG - chr2_3:27597111-27597130 Msa0286470:intron 40.0%
AGCAATGGTGGCAATGAATA+AGG - chr2_3:27597143-27597162 Msa0286470:intron 40.0%
GGAAATGTTTGACAGAAGAC+TGG - chr2_3:27597364-27597383 Msa0286470:intron 40.0%
TCATTGTGGTGTGCAATCTT+TGG + chr2_3:27597895-27597914 None:intergenic 40.0%
TTTCGCCAGTATTAGACTGT+TGG - chr2_3:27597954-27597973 Msa0286470:intron 40.0%
TTCGCCAGTATTAGACTGTT+GGG - chr2_3:27597955-27597974 Msa0286470:intron 40.0%
AGTTCCCAACAGTCTAATAC+TGG + chr2_3:27597962-27597981 None:intergenic 40.0%
AGCATTGTATGATCCACCAA+AGG - chr2_3:27598007-27598026 Msa0286470:intron 40.0%
ATTGTATGATCCACCAAAGG+TGG - chr2_3:27598010-27598029 Msa0286470:intron 40.0%
CACTATCGTCTTCAGTATAG+TGG + chr2_3:27598266-27598285 None:intergenic 40.0%
CACTATACTGAAGACGATAG+TGG - chr2_3:27598264-27598283 Msa0286470:intron 40.0%
AAACACAGAAGGAGAACTTG+AGG - chr2_3:27598343-27598362 Msa0286470:intron 40.0%
GTCAGAATATTGCTATGACG+TGG - chr2_3:27598503-27598522 Msa0286470:intron 40.0%
GGAAACTTGTCACAGCAATT+GGG - chr2_3:27598559-27598578 Msa0286470:intron 40.0%
GAAACTTGTCACAGCAATTG+GGG - chr2_3:27598560-27598579 Msa0286470:intron 40.0%
ACTCAACCAGCTTCAATTTG+TGG - chr2_3:27598693-27598712 Msa0286470:CDS 40.0%
TACTCTGTTGTACTCAACCA+CGG - chr2_3:27598682-27598701 Msa0286470:CDS 40.0%
! CTGCTTTAAGTACTACCATG+AGG + chr2_3:27598903-27598922 None:intergenic 40.0%
CTCATGGTAGTACTTAAAGC+AGG - chr2_3:27598901-27598920 Msa0286470:intron 40.0%
CATCATCTCAAACTGCATCT+CGG + chr2_3:27598985-27599004 None:intergenic 40.0%
ATCAGAAGAACTCACTAACC+AGG - chr2_3:27599137-27599156 Msa0286470:intron 40.0%
GGTTCTTGATGAAATTGGAG+TGG - chr2_3:27599258-27599277 Msa0286470:intron 40.0%
ATTGGGCTCAAAACAAACCT+GGG + chr2_3:27599293-27599312 None:intergenic 40.0%
TATTGGGCTCAAAACAAACC+TGG + chr2_3:27599294-27599313 None:intergenic 40.0%
CCAACTACTCGAAAACTCTT+AGG + chr2_3:27599426-27599445 None:intergenic 40.0%
!!! CCTAAGAGTTTTCGAGTAGT+TGG - chr2_3:27599423-27599442 Msa0286470:intron 40.0%
TAGTTATCTTCTGCTCCGAA+AGG - chr2_3:27599531-27599550 Msa0286470:intron 40.0%
! TGGCAGTCAATATGCTACTT+CGG - chr2_3:27599985-27600004 Msa0286470:five_prime_UTR 40.0%
! AGTCAATATGCTACTTCGGT+CGG - chr2_3:27599989-27600008 Msa0286470:five_prime_UTR 40.0%
TGATCTCATACACCTTATGC+AGG + chr2_3:27600067-27600086 None:intergenic 40.0%
TAAGAGAGAGGAGAGACCTT+GGG + chr2_3:27593385-27593404 None:intergenic 45.0%
CATCGACACTTCACACATTG+AGG - chr2_3:27594030-27594049 Msa0286470:intron 45.0%
CGGACATTTAACCGTCAACA+CGG + chr2_3:27594107-27594126 None:intergenic 45.0%
ATAGTAGAAGGTGAAGGGTG+GGG - chr2_3:27594181-27594200 Msa0286470:intron 45.0%
TTTGTCCCGCATTTGTACCA+AGG + chr2_3:27594268-27594287 None:intergenic 45.0%
! TAGTGGACAGGTCTTGGATA+TGG + chr2_3:27594462-27594481 None:intergenic 45.0%
GATAGCATCACTTCAGATGG+AGG - chr2_3:27594683-27594702 Msa0286470:intron 45.0%
! TTCTTTTCCTGCGGTACACA+AGG + chr2_3:27594780-27594799 None:intergenic 45.0%
ATCCACTCTCTCTCTAGTTG+AGG - chr2_3:27594979-27594998 Msa0286470:intron 45.0%
TTCCTCAACTAGAGAGAGAG+TGG + chr2_3:27594984-27595003 None:intergenic 45.0%
GGATTTCAAGCTATGGCTTG+AGG + chr2_3:27595392-27595411 None:intergenic 45.0%
TCAGTTTCTGACTACTCCAG+AGG - chr2_3:27595441-27595460 Msa0286470:intron 45.0%
! CAGTATCAGTCATCGATTGG+AGG + chr2_3:27595510-27595529 None:intergenic 45.0%
!! GGGGATTTTCTAGAAGTGGT+GGG + chr2_3:27595550-27595569 None:intergenic 45.0%
!! TAGGGGGGATTTTCTAGAAG+TGG + chr2_3:27595554-27595573 None:intergenic 45.0%
TGATTACTAAACGGGTAGGG+GGG + chr2_3:27595569-27595588 None:intergenic 45.0%
CTGATTACTAAACGGGTAGG+GGG + chr2_3:27595570-27595589 None:intergenic 45.0%
GGTCTGATTACTAAACGGGT+AGG + chr2_3:27595573-27595592 None:intergenic 45.0%
! TTATGAGCATTGCCAGTAGG+TGG - chr2_3:27595659-27595678 Msa0286470:intron 45.0%
! CATTGCCAGTAGGTGGTTTT+TGG - chr2_3:27595666-27595685 Msa0286470:intron 45.0%
TGTCTAGAGACTTTGTTGCC+TGG + chr2_3:27595838-27595857 None:intergenic 45.0%
GTATGAGGTTGACCTCCAAT+CGG - chr2_3:27595495-27595514 Msa0286470:intron 45.0%
! CAGTATTAGTCACCGATTGG+AGG + chr2_3:27595886-27595905 None:intergenic 45.0%
GGAGTTGCTTATTCGCAACA+AGG + chr2_3:27596149-27596168 None:intergenic 45.0%
AGTCGTACAGTCTTCGTTTG+TGG - chr2_3:27596254-27596273 Msa0286470:intron 45.0%
AACCATCTCTCGTGCTTGAT+TGG + chr2_3:27596286-27596305 None:intergenic 45.0%
TGCACACCATTCCTCAACTA+AGG - chr2_3:27596332-27596351 Msa0286470:intron 45.0%
AGAGGTCCTTAGTTGAGGAA+TGG + chr2_3:27596341-27596360 None:intergenic 45.0%
AATCATTATGCTAGGCGGAG+AGG - chr2_3:27596580-27596599 Msa0286470:intron 45.0%
ATCATTATGCTAGGCGGAGA+GGG - chr2_3:27596581-27596600 Msa0286470:intron 45.0%
TACTGTAGTATCTGCCCAAC+TGG - chr2_3:27596784-27596803 Msa0286470:intron 45.0%
GCAAGCACTTCAATCTCTAC+AGG - chr2_3:27597102-27597121 Msa0286470:intron 45.0%
CATTGCCACCATTGCTTTAG+TGG + chr2_3:27597139-27597158 None:intergenic 45.0%
GTTTATGACCCAAAGGGTAG+AGG - chr2_3:27597257-27597276 Msa0286470:intron 45.0%
CAAGACAACCTCTACCCTTT+GGG + chr2_3:27597268-27597287 None:intergenic 45.0%
TCAAGACAACCTCTACCCTT+TGG + chr2_3:27597269-27597288 None:intergenic 45.0%
ATCTTCTCAGCAAATGGCAC+CGG - chr2_3:27597693-27597712 Msa0286470:intron 45.0%
ATCACTTTAGCCTGCTTTGC+CGG + chr2_3:27597715-27597734 None:intergenic 45.0%
!!! CCAGTTGTGCTGATTGCTTT+TGG + chr2_3:27597747-27597766 None:intergenic 45.0%
CCAAAAGCAATCAGCACAAC+TGG - chr2_3:27597744-27597763 Msa0286470:intron 45.0%
ATCAGCACAACTGGACATGA+CGG - chr2_3:27597753-27597772 Msa0286470:intron 45.0%
ATACTGGCGAAACACTGGAT+TGG + chr2_3:27597946-27597965 None:intergenic 45.0%
GTCTAATACTGGCGAAACAC+TGG + chr2_3:27597951-27597970 None:intergenic 45.0%
TAAGTAAGCACCACCTTTGG+TGG + chr2_3:27598023-27598042 None:intergenic 45.0%
ATCGTCTTCAGTATAGTGGC+AGG + chr2_3:27598262-27598281 None:intergenic 45.0%
ACAGAAGGAGAACTTGAGGT+TGG - chr2_3:27598347-27598366 Msa0286470:intron 45.0%
GAAGATTGTGGGCAATAGAG+AGG - chr2_3:27598389-27598408 Msa0286470:intron 45.0%
! CTGTGACAAGTTTCCCCTTT+TGG + chr2_3:27598554-27598573 None:intergenic 45.0%
GGGAAACTTGTCACAGCAAT+TGG - chr2_3:27598558-27598577 Msa0286470:intron 45.0%
GAGGTCACAGGTTCAATTTG+TGG - chr2_3:27598600-27598619 Msa0286470:intron 45.0%
ACCAGCTTCTAGCAAAAGCA+AGG - chr2_3:27598624-27598643 Msa0286470:intron 45.0%
!! ACCTTGCTTTTGCTAGAAGC+TGG + chr2_3:27598628-27598647 None:intergenic 45.0%
GGTTGAGTACAACAGAGTAC+TGG + chr2_3:27598681-27598700 None:intergenic 45.0%
CTGGTTCCACAAATTGAAGC+TGG + chr2_3:27598702-27598721 None:intergenic 45.0%
ACCAGCTTCTAGCAAAAGCA+AGG - chr2_3:27598624-27598643 Msa0286470:intron 45.0%
!! ACCTTGCTTTTGCTAGAAGC+TGG + chr2_3:27598628-27598647 None:intergenic 45.0%
GGTTGAGTACAACAGAGTAC+TGG + chr2_3:27598681-27598700 None:intergenic 45.0%
AGTACTACCATGAGGCTATC+AGG + chr2_3:27598895-27598914 None:intergenic 45.0%
TATCTTCTGCTCCGAAAGGT+CGG - chr2_3:27599535-27599554 Msa0286470:intron 45.0%
CTTGAAGCAATCCGACCTTT+CGG + chr2_3:27599549-27599568 None:intergenic 45.0%
ATGCTGAAAATGCTGCTCCA+AGG - chr2_3:27599571-27599590 Msa0286470:intron 45.0%
TCTGCATGCACAAAGCAACA+TGG + chr2_3:27599671-27599690 None:intergenic 45.0%
!! TTTGTAATTAAAAAAAAAAA+AGG + chr2_3:27593423-27593442 None:intergenic 5.0%
!!! ATATTATATTCATTATTTTA+AGG + chr2_3:27593989-27594008 None:intergenic 5.0%
GGAGCGTGCTGTGTATTGTT+GGG + chr2_3:27593351-27593370 None:intergenic 50.0%
GTAAGAGAGAGGAGAGACCT+TGG + chr2_3:27593386-27593405 None:intergenic 50.0%
GATGAACGAACCTTTGGGTG+TGG + chr2_3:27593579-27593598 None:intergenic 50.0%
TTGAGGTGTGTCCGACACAT+TGG - chr2_3:27594047-27594066 Msa0286470:intron 50.0%
TAGTAGAAGGTGAAGGGTGG+GGG - chr2_3:27594182-27594201 Msa0286470:intron 50.0%
GGAGGTCCTTGGTACAAATG+CGG - chr2_3:27594259-27594278 Msa0286470:intron 50.0%
GAGGTCCTTGGTACAAATGC+GGG - chr2_3:27594260-27594279 Msa0286470:intron 50.0%
GTCTTGGATATGGAGGTTCC+AGG + chr2_3:27594452-27594471 None:intergenic 50.0%
TGGACAGGTCTTGGATATGG+AGG + chr2_3:27594459-27594478 None:intergenic 50.0%
! TTGGTCTAGTGGACAGGTCT+TGG + chr2_3:27594468-27594487 None:intergenic 50.0%
! AAGGGTTTGGTCTAGTGGAC+AGG + chr2_3:27594474-27594493 None:intergenic 50.0%
TGTCCACTAGACCAAACCCT+TGG - chr2_3:27594473-27594492 Msa0286470:intron 50.0%
! ACTCCAAGGGTTTGGTCTAG+TGG + chr2_3:27594479-27594498 None:intergenic 50.0%
TTAACTGCCTTGTGTACCGC+AGG - chr2_3:27594770-27594789 Msa0286470:intron 50.0%
CACGCCAAAAAACCGCCTAT+TGG + chr2_3:27595295-27595314 None:intergenic 50.0%
!! GGGGGATTTTCTAGAAGTGG+TGG + chr2_3:27595551-27595570 None:intergenic 50.0%
GCACACCAAAAACCACCTAC+TGG + chr2_3:27595674-27595693 None:intergenic 50.0%
CACCAATCAAGCACGAGAGA+TGG - chr2_3:27596281-27596300 Msa0286470:intron 50.0%
ACCAGTGGCAAGGATGAACA+CGG + chr2_3:27596495-27596514 None:intergenic 50.0%
!! GAAGGGTGCCACTAAAGCAA+TGG - chr2_3:27597128-27597147 Msa0286470:intron 50.0%
!! ACTGAAGACGATAGTGGGTG+TGG - chr2_3:27598270-27598289 Msa0286470:intron 50.0%
! AGTGGGTGTGGTTTTTGCAC+TGG - chr2_3:27598282-27598301 Msa0286470:intron 50.0%
TGGAGTGGATATTGCATCCC+AGG - chr2_3:27599273-27599292 Msa0286470:intron 50.0%
CGAAAGGTCGGATTGCTTCA+AGG - chr2_3:27599547-27599566 Msa0286470:intron 50.0%
GCATGCACAAAGCAACATGG+AGG + chr2_3:27599668-27599687 None:intergenic 50.0%
! GGGAGCGTGCTGTGTATTGT+TGG + chr2_3:27593352-27593371 None:intergenic 55.0%
AGAGGAGAGACCTTGGGCTT+GGG + chr2_3:27593379-27593398 None:intergenic 55.0%
ACCGTGTTCATCCTTGCCAC+TGG - chr2_3:27596491-27596510 Msa0286470:intron 55.0%
AGGGAAGTCGTGCACAGATC+AGG - chr2_3:27596970-27596989 Msa0286470:intron 55.0%
GGGAAGTCGTGCACAGATCA+GGG - chr2_3:27596971-27596990 Msa0286470:intron 55.0%
GGAAGTCGTGCACAGATCAG+GGG - chr2_3:27596972-27596991 Msa0286470:intron 55.0%
GGGTGTAGCAACTCACACAC+AGG - chr2_3:27596992-27597011 Msa0286470:intron 55.0%
!! GGGTGCCACTAAAGCAATGG+TGG - chr2_3:27597131-27597150 Msa0286470:intron 55.0%
TGGGGTTGCACCATGTGACT+AGG - chr2_3:27598578-27598597 Msa0286470:intron 55.0%
GGTTGCACCATGTGACTAGG+AGG - chr2_3:27598581-27598600 Msa0286470:intron 55.0%
CCTGTGACCTCCTAGTCACA+TGG + chr2_3:27598591-27598610 None:intergenic 55.0%
CCATGTGACTAGGAGGTCAC+AGG - chr2_3:27598588-27598607 Msa0286470:intron 55.0%
TGTTGTACTCAACCACGGCG+AGG - chr2_3:27598780-27598799 Msa0286470:intron 55.0%
CTACCATGAGGCTATCAGGC+AGG + chr2_3:27598891-27598910 None:intergenic 55.0%
AGACCTTGGGCTTGGGGTTG+GGG + chr2_3:27593372-27593391 None:intergenic 60.0%
GAGACCTTGGGCTTGGGGTT+GGG + chr2_3:27593373-27593392 None:intergenic 60.0%
AGAGACCTTGGGCTTGGGGT+TGG + chr2_3:27593374-27593393 None:intergenic 60.0%
GAGGAGAGACCTTGGGCTTG+GGG + chr2_3:27593378-27593397 None:intergenic 60.0%
GAGAGGAGAGACCTTGGGCT+TGG + chr2_3:27593380-27593399 None:intergenic 60.0%
AGAAGGTGAAGGGTGGGGGT+TGG - chr2_3:27594186-27594205 Msa0286470:intron 60.0%
GAAGGTGAAGGGTGGGGGTT+GGG - chr2_3:27594187-27594206 Msa0286470:intron 60.0%
TGAAGGGTGGGGGTTGGGTT+GGG - chr2_3:27594192-27594211 Msa0286470:intron 60.0%
!! TCCTGGCTCGGCAGCTAGTT+AGG - chr2_3:27596922-27596941 Msa0286470:intron 60.0%
ACCTAACTAGCTGCCGAGCC+AGG + chr2_3:27596926-27596945 None:intergenic 60.0%
!! GCAAATGGCACCGGCAAAGC+AGG - chr2_3:27597702-27597721 Msa0286470:intron 60.0%
ATAAAGCTCTCGCCTCGCCG+TGG + chr2_3:27598795-27598814 None:intergenic 60.0%
GTGCCTGCCTGATAGCCTCA+TGG - chr2_3:27598885-27598904 Msa0286470:intron 60.0%
ACACCTTATGCAGGTGCCCG+CGG + chr2_3:27600058-27600077 None:intergenic 60.0%
GTGAAGGGTGGGGGTTGGGT+TGG - chr2_3:27594191-27594210 Msa0286470:intron 65.0%
!! CCTCCCTCCAAGGGCACTAG+CGG - chr2_3:27594418-27594437 Msa0286470:intron 65.0%
!! CTCCCTCCAAGGGCACTAGC+GGG - chr2_3:27594419-27594438 Msa0286470:intron 65.0%
!! TCCCTCCAAGGGCACTAGCG+GGG - chr2_3:27594420-27594439 Msa0286470:intron 65.0%
GTACCGCGGGCACCTGCATA+AGG - chr2_3:27600052-27600071 Msa0286470:intron 65.0%
GCTCCCCAACCCCAAGCCCA+AGG - chr2_3:27593366-27593385 Msa0286470:three_prime_UTR 70.0%
CCGCTAGTGCCCTTGGAGGG+AGG + chr2_3:27594421-27594440 None:intergenic 70.0%
GCCCCGCTAGTGCCCTTGGA+GGG + chr2_3:27594424-27594443 None:intergenic 70.0%
AGCCCCGCTAGTGCCCTTGG+AGG + chr2_3:27594425-27594444 None:intergenic 70.0%
TCGAGCCCCGCTAGTGCCCT+TGG + chr2_3:27594428-27594447 None:intergenic 70.0%
GCACTAGCGGGGCTCGAACC+TGG - chr2_3:27594431-27594450 Msa0286470:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 27593338 27600168 27593338 ID=Msa0286470;Name=Msa0286470
chr2_3 mRNA 27593338 27600168 27593338 ID=Msa0286470-mRNA-1;Parent=Msa0286470;Name=Msa0286470-mRNA-1;_AED=0.16;_eAED=0.16;_QI=113|1|1|1|0.90|0.83|12|418|216
chr2_3 exon 27593338 27593816 27593338 ID=Msa0286470-mRNA-1:exon:9892;Parent=Msa0286470-mRNA-1
chr2_3 exon 27593914 27593972 27593914 ID=Msa0286470-mRNA-1:exon:9891;Parent=Msa0286470-mRNA-1
chr2_3 exon 27594212 27594247 27594212 ID=Msa0286470-mRNA-1:exon:9890;Parent=Msa0286470-mRNA-1
chr2_3 exon 27594348 27594428 27594348 ID=Msa0286470-mRNA-1:exon:9889;Parent=Msa0286470-mRNA-1
chr2_3 exon 27595732 27595803 27595732 ID=Msa0286470-mRNA-1:exon:9888;Parent=Msa0286470-mRNA-1
chr2_3 exon 27596342 27596413 27596342 ID=Msa0286470-mRNA-1:exon:9887;Parent=Msa0286470-mRNA-1
chr2_3 exon 27596493 27596597 27596493 ID=Msa0286470-mRNA-1:exon:9886;Parent=Msa0286470-mRNA-1
chr2_3 exon 27598664 27598714 27598664 ID=Msa0286470-mRNA-1:exon:9885;Parent=Msa0286470-mRNA-1
chr2_3 exon 27598802 27598836 27598802 ID=Msa0286470-mRNA-1:exon:9884;Parent=Msa0286470-mRNA-1
chr2_3 exon 27599720 27599764 27599720 ID=Msa0286470-mRNA-1:exon:9883;Parent=Msa0286470-mRNA-1
chr2_3 exon 27599919 27600015 27599919 ID=Msa0286470-mRNA-1:exon:9882;Parent=Msa0286470-mRNA-1
chr2_3 exon 27600119 27600168 27600119 ID=Msa0286470-mRNA-1:exon:9881;Parent=Msa0286470-mRNA-1
chr2_3 five_prime_UTR 27600119 27600168 27600119 ID=Msa0286470-mRNA-1:five_prime_utr;Parent=Msa0286470-mRNA-1
chr2_3 five_prime_UTR 27599953 27600015 27599953 ID=Msa0286470-mRNA-1:five_prime_utr;Parent=Msa0286470-mRNA-1
chr2_3 CDS 27599919 27599952 27599919 ID=Msa0286470-mRNA-1:cds;Parent=Msa0286470-mRNA-1
chr2_3 CDS 27599720 27599764 27599720 ID=Msa0286470-mRNA-1:cds;Parent=Msa0286470-mRNA-1
chr2_3 CDS 27598802 27598836 27598802 ID=Msa0286470-mRNA-1:cds;Parent=Msa0286470-mRNA-1
chr2_3 CDS 27598664 27598714 27598664 ID=Msa0286470-mRNA-1:cds;Parent=Msa0286470-mRNA-1
chr2_3 CDS 27596493 27596597 27596493 ID=Msa0286470-mRNA-1:cds;Parent=Msa0286470-mRNA-1
chr2_3 CDS 27596342 27596413 27596342 ID=Msa0286470-mRNA-1:cds;Parent=Msa0286470-mRNA-1
chr2_3 CDS 27595732 27595803 27595732 ID=Msa0286470-mRNA-1:cds;Parent=Msa0286470-mRNA-1
chr2_3 CDS 27594348 27594428 27594348 ID=Msa0286470-mRNA-1:cds;Parent=Msa0286470-mRNA-1
chr2_3 CDS 27594212 27594247 27594212 ID=Msa0286470-mRNA-1:cds;Parent=Msa0286470-mRNA-1
chr2_3 CDS 27593914 27593972 27593914 ID=Msa0286470-mRNA-1:cds;Parent=Msa0286470-mRNA-1
chr2_3 CDS 27593756 27593816 27593756 ID=Msa0286470-mRNA-1:cds;Parent=Msa0286470-mRNA-1
chr2_3 three_prime_UTR 27593338 27593755 27593338 ID=Msa0286470-mRNA-1:three_prime_utr;Parent=Msa0286470-mRNA-1
Gene Sequence

>Msa0286470

ATGAACATCTTCAAGAAGAAAACCACACCCAAAGAAGCTCTGCGACAAAGTAAAAGAGAAATGTCTGTTGCAACTAGAGGAATTGAAAGAGAGATAGCATCACTTCAGATGGAGGAAAAGAAGTTAGTTGCAGAGATTAAAAGAGAGGCAAAAACTGGAAATGAGGCTTCTACTAAAATCCTGGCTCGGCAGCTAGTTAGGTTACGCCAACAGATAACTAATCTGCAGGGAAGTCGTGCACAGATCAGGGGTGTAGCAACTCACACACAGGCATTATATGCAAGCACTTCAATCTCTACAGGGATGAAGGGTGCCACTAAAGCAATGGTGGCAATGAATAAGCAAATGGCACCGGCAAAGCAGGCTAAAGTGATTCAAGAATTCCAAAAGCAATCAGCACAACTGGACATGACGATTGAGATGATGTCAGAATCTATTGATGAAACTTTAGACAAAGATGAAGCTGAGGAAGAATCAGAAGAACTCACTAACCAGGTTCTTGATGAAATTGGAGTGGATATTGCATCCCAGTTATCTTCTGCTCCGAAAGGTCGGATTGCTTCAAGGAATGCTGAAAATGCTGCTCCAAGATCAGAATCCCAAGATGTTGAAGAACTTGAAAAGAGATTGGCTTCTCTTCGAAGAATATAA

Protein sequence

>Msa0286470

MNIFKKKTTPKEALRQSKREMSVATRGIEREIASLQMEEKKLVAEIKREAKTGNEASTKILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMKGATKAMVAMNKQMAPAKQAKVIQEFQKQSAQLDMTIEMMSESIDETLDKDEAEEESEELTNQVLDEIGVDIASQLSSAPKGRIASRNAENAAPRSESQDVEELEKRLASLRRI*