Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0286470 | XP_013463763.1 | 100.000 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 3.70e-151 | 428 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0286470 | sp|Q0WTY4|VPS2B_ARATH | 83.784 | 222 | 30 | 1 | 1 | 216 | 1 | 222 | 8.19e-129 | 365 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0286470 | B7FHD8 | 100.000 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 1.77e-151 | 428 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0286470 | Msa0325320 | 0.879278 | 1.420156e-69 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0286470 | MtrunA17_Chr2g0303251 | 100.000 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 3.41e-155 | 428 |
Msa0286470 | MtrunA17_Chr1g0183621 | 73.364 | 214 | 53 | 1 | 1 | 214 | 5 | 214 | 2.69e-114 | 325 |
Msa0286470 | MtrunA17_Chr7g0261511 | 77.103 | 214 | 45 | 1 | 1 | 214 | 1 | 210 | 1.86e-104 | 300 |
Msa0286470 | MtrunA17_Chr2g0300321 | 40.909 | 220 | 124 | 1 | 3 | 216 | 4 | 223 | 1.04e-41 | 140 |
Msa0286470 | MtrunA17_Chr8g0343561 | 43.750 | 176 | 99 | 0 | 3 | 178 | 4 | 179 | 1.35e-38 | 133 |
Msa0286470 | MtrunA17_Chr4g0028231 | 29.730 | 222 | 148 | 1 | 1 | 214 | 5 | 226 | 1.07e-17 | 78.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0286470 | AT5G44560.1 | 83.784 | 222 | 30 | 1 | 1 | 216 | 1 | 222 | 8.32e-130 | 365 |
Msa0286470 | AT5G44560.2 | 83.168 | 202 | 28 | 1 | 21 | 216 | 1 | 202 | 2.16e-115 | 327 |
Msa0286470 | AT5G44560.4 | 88.764 | 178 | 20 | 0 | 1 | 178 | 1 | 178 | 3.65e-114 | 324 |
Msa0286470 | AT1G03950.1 | 71.963 | 214 | 56 | 1 | 1 | 214 | 1 | 210 | 1.09e-110 | 316 |
Msa0286470 | AT5G44560.3 | 84.000 | 150 | 24 | 0 | 1 | 150 | 1 | 150 | 3.16e-88 | 257 |
Msa0286470 | AT2G06530.1 | 41.518 | 224 | 123 | 2 | 1 | 216 | 2 | 225 | 5.24e-44 | 147 |
Msa0286470 | AT2G06530.2 | 40.500 | 200 | 112 | 1 | 24 | 216 | 5 | 204 | 1.15e-36 | 127 |
Msa0286470 | AT5G22950.1 | 32.589 | 224 | 141 | 3 | 1 | 214 | 5 | 228 | 1.47e-16 | 75.9 |
Find 72 sgRNAs with CRISPR-Local
Find 402 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACTGTCCAAATTGTGAAAA+TGG | 0.145046 | 2_3:-27593338 | Msa0286470:three_prime_UTR |
AGACCTTGGGCTTGGGGTTG+GGG | 0.152836 | 2_3:+27600115 | None:intergenic |
GAGACCTTGGGCTTGGGGTT+GGG | 0.198919 | 2_3:+27600114 | None:intergenic |
TGACAGGTTCTTGATGAAAT+TGG | 0.228952 | 2_3:-27594231 | Msa0286470:intron |
CCTCTGCTTGAATTAGGTTT+TGG | 0.244938 | 2_3:-27599965 | Msa0286470:five_prime_UTR |
TAACATCCTCTGCTTGAATT+AGG | 0.247251 | 2_3:-27599971 | Msa0286470:five_prime_UTR |
CATTGCCACCATTGCTTTAG+TGG | 0.261194 | 2_3:+27596348 | None:intergenic |
CCAGTTGTGCTGATTGCTTT+TGG | 0.285128 | 2_3:+27595740 | None:intergenic |
AATTCTGCGTTTGTTTGTTT+AGG | 0.295849 | 2_3:-27593571 | Msa0286470:three_prime_UTR |
AGAGACCTTGGGCTTGGGGT+TGG | 0.320479 | 2_3:+27600113 | None:intergenic |
TTTCAAGTTCTTCAACATCT+TGG | 0.321093 | 2_3:+27593785 | None:intergenic |
AGAGGAGAGACCTTGGGCTT+GGG | 0.323762 | 2_3:+27600108 | None:intergenic |
ATCACTTTAGCCTGCTTTGC+CGG | 0.327935 | 2_3:+27595772 | None:intergenic |
CAACAATAAGATTGTATTAT+CGG | 0.338889 | 2_3:-27593683 | Msa0286470:three_prime_UTR |
AGCAATGGTGGCAATGAATA+AGG | 0.349876 | 2_3:-27596341 | Msa0286470:intron |
TTCAAGTTCTTCAACATCTT+GGG | 0.356079 | 2_3:+27593786 | None:intergenic |
GCCACTTGAAACATTTAGTT+AGG | 0.365262 | 2_3:+27593518 | None:intergenic |
AGGGAAGTCGTGCACAGATC+AGG | 0.381377 | 2_3:-27596514 | Msa0286470:CDS |
CTTGAAGCAATCCGACCTTT+CGG | 0.382816 | 2_3:+27593938 | None:intergenic |
GAGAGGAGAGACCTTGGGCT+TGG | 0.393827 | 2_3:+27600107 | None:intergenic |
TGAAGAACTTGAAAAGAGAT+TGG | 0.400428 | 2_3:-27593776 | Msa0286470:CDS |
TCCTGGCTCGGCAGCTAGTT+AGG | 0.403556 | 2_3:-27596562 | Msa0286470:CDS |
GGGAGCGTGCTGTGTATTGT+TGG | 0.408033 | 2_3:+27600135 | None:intergenic |
CCAAAAGCAATCAGCACAAC+TGG | 0.415296 | 2_3:-27595740 | Msa0286470:CDS |
GCAAGCACTTCAATCTCTAC+AGG | 0.426499 | 2_3:-27596382 | Msa0286470:CDS |
AGAGAATTTATTTGCAGCTA+AGG | 0.435040 | 2_3:-27593377 | Msa0286470:three_prime_UTR |
CGAAAGGTCGGATTGCTTCA+AGG | 0.442942 | 2_3:-27593937 | Msa0286470:CDS |
TTCAATCTCTACAGGGATGA+AGG | 0.458265 | 2_3:-27596374 | Msa0286470:CDS |
GTACCGCGGGCACCTGCATA+AGG | 0.463608 | 2_3:-27593432 | Msa0286470:three_prime_UTR |
TGGAGTGGATATTGCATCCC+AGG | 0.474380 | 2_3:-27594211 | Msa0286470:intron |
ACTGTCCAAATTGTGAAAAT+GGG | 0.474853 | 2_3:-27593337 | None:intergenic |
ACCTAACTAGCTGCCGAGCC+AGG | 0.485867 | 2_3:+27596561 | None:intergenic |
GAGGAGAGACCTTGGGCTTG+GGG | 0.485952 | 2_3:+27600109 | None:intergenic |
TAGATATAAAGTATAGTTGT+GGG | 0.487913 | 2_3:-27593626 | Msa0286470:three_prime_UTR |
GCAAATGGCACCGGCAAAGC+AGG | 0.491669 | 2_3:-27595782 | Msa0286470:CDS |
CCTGCAGATTAGTTATCTGT+TGG | 0.504006 | 2_3:+27596534 | None:intergenic |
CCAACAGATAACTAATCTGC+AGG | 0.509427 | 2_3:-27596534 | Msa0286470:CDS |
GGGAAGTCGTGCACAGATCA+GGG | 0.524632 | 2_3:-27596513 | Msa0286470:CDS |
AGAGATAGCATCACTTCAGA+TGG | 0.527919 | 2_3:-27598804 | Msa0286470:CDS |
ACAGGCTTCTACTAAAATCC+TGG | 0.535270 | 2_3:-27596579 | Msa0286470:intron |
GATGAACGAACCTTTGGGTG+TGG | 0.536552 | 2_3:+27599908 | None:intergenic |
ATCTTCTCAGCAAATGGCAC+CGG | 0.537436 | 2_3:-27595791 | Msa0286470:intron |
AGTTGCAGAGATTAAAAGAG+AGG | 0.544597 | 2_3:-27598681 | Msa0286470:CDS |
GGAGCGTGCTGTGTATTGTT+GGG | 0.558441 | 2_3:+27600136 | None:intergenic |
GAAATGTCTGTTGCAACTAG+AGG | 0.569526 | 2_3:-27599719 | Msa0286470:intron |
TGATCTCATACACCTTATGC+AGG | 0.569604 | 2_3:+27593420 | None:intergenic |
TTAGATATAAAGTATAGTTG+TGG | 0.569645 | 2_3:-27593627 | Msa0286470:three_prime_UTR |
AATATAATCAGTAACAAATG+AGG | 0.572412 | 2_3:+27593658 | None:intergenic |
TCAATCTCTACAGGGATGAA+GGG | 0.583879 | 2_3:-27596373 | Msa0286470:CDS |
TATCTTCTGCTCCGAAAGGT+CGG | 0.586806 | 2_3:-27593949 | Msa0286470:CDS |
TGGCAGTCAATATGCTACTT+CGG | 0.587003 | 2_3:-27593499 | Msa0286470:three_prime_UTR |
TCCTAACTAAATGTTTCAAG+TGG | 0.596759 | 2_3:-27593519 | Msa0286470:three_prime_UTR |
CTTCTACTAAAATCCTGGCT+CGG | 0.598970 | 2_3:-27596574 | Msa0286470:CDS |
GGTTCTTGATGAAATTGGAG+TGG | 0.601589 | 2_3:-27594226 | Msa0286470:CDS |
GCTCCCCAACCCCAAGCCCA+AGG | 0.601725 | 2_3:-27600118 | Msa0286470:intron |
ATGCTGAAAATGCTGCTCCA+AGG | 0.612137 | 2_3:-27593913 | Msa0286470:intron |
CAAGCACTTCAATCTCTACA+GGG | 0.614124 | 2_3:-27596381 | Msa0286470:CDS |
GATAGCATCACTTCAGATGG+AGG | 0.618277 | 2_3:-27598801 | Msa0286470:intron |
CCAAAACCTAATTCAAGCAG+AGG | 0.619372 | 2_3:+27599965 | None:intergenic |
ATCAGCACAACTGGACATGA+CGG | 0.620669 | 2_3:-27595731 | Msa0286470:intron |
AAGAAGAAAACCACACCCAA+AGG | 0.621044 | 2_3:-27599918 | Msa0286470:intron |
GGGTGCCACTAAAGCAATGG+TGG | 0.624027 | 2_3:-27596353 | Msa0286470:CDS |
GAAGGGTGCCACTAAAGCAA+TGG | 0.625367 | 2_3:-27596356 | Msa0286470:CDS |
AGTCAATATGCTACTTCGGT+CGG | 0.627899 | 2_3:-27593495 | Msa0286470:three_prime_UTR |
ATCAGAAGAACTCACTAACC+AGG | 0.628471 | 2_3:-27594347 | Msa0286470:intron |
ACACCTTATGCAGGTGCCCG+CGG | 0.629981 | 2_3:+27593429 | None:intergenic |
TAGTTATCTTCTGCTCCGAA+AGG | 0.634306 | 2_3:-27593953 | Msa0286470:CDS |
TTTAGACAAAGATGAAGCTG+AGG | 0.636787 | 2_3:-27594374 | Msa0286470:CDS |
ATAAGGTGTATGAGATCACA+TGG | 0.652977 | 2_3:-27593415 | Msa0286470:three_prime_UTR |
GGAAGTCGTGCACAGATCAG+GGG | 0.664483 | 2_3:-27596512 | Msa0286470:CDS |
GGGTGTAGCAACTCACACAC+AGG | 0.671175 | 2_3:-27596492 | Msa0286470:intron |
CAACAGATAACTAATCTGCA+GGG | 0.676896 | 2_3:-27596533 | Msa0286470:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTCATATATAAAATCAAA+TGG | + | chr2_3:27593894-27593913 | None:intergenic | 10.0% |
!!! | TTTTTATTTAGATGTATATT+TGG | - | chr2_3:27594879-27594898 | Msa0286470:intron | 10.0% |
!!! | TTTTATTTAGATGTATATTT+GGG | - | chr2_3:27594880-27594899 | Msa0286470:intron | 10.0% |
!!! | AACTTTTATGAAAATTTTTA+CGG | - | chr2_3:27597978-27597997 | Msa0286470:intron | 10.0% |
!!! | TTAATTACTTTTATGAATAT+TGG | - | chr2_3:27599480-27599499 | Msa0286470:intron | 10.0% |
!!! | TAATTACTTTTATGAATATT+GGG | - | chr2_3:27599481-27599500 | Msa0286470:intron | 10.0% |
!!! | TTTTTTTTTCCTTTCTAAAT+AGG | - | chr2_3:27593944-27593963 | Msa0286470:CDS | 15.0% |
!!! | TAATTTTTTCCTATTTAGAA+AGG | + | chr2_3:27593956-27593975 | None:intergenic | 15.0% |
!!! | CATTATTTTAAGGTATTATA+AGG | + | chr2_3:27593979-27593998 | None:intergenic | 15.0% |
!!! | CTTTAACTGTTTTTTTTTAA+TGG | + | chr2_3:27594330-27594349 | None:intergenic | 15.0% |
!! | CATTAAAAAAAAACAGTTAA+AGG | - | chr2_3:27594328-27594347 | Msa0286470:intron | 15.0% |
!! | ATGATAAATATTTGTATGTT+TGG | + | chr2_3:27595087-27595106 | None:intergenic | 15.0% |
!! | TAAATAAATAGATTTCTAAC+TGG | + | chr2_3:27596611-27596630 | None:intergenic | 15.0% |
!!! | CAATTATTAGTCTTTTTTTT+TGG | - | chr2_3:27597916-27597935 | Msa0286470:intron | 15.0% |
!! | ATATATATAATCTAATGCTA+TGG | + | chr2_3:27598933-27598952 | None:intergenic | 15.0% |
!! | AAATATTTGTATGTTTGGAT+TGG | + | chr2_3:27595082-27595101 | None:intergenic | 20.0% |
!! | ACTATAGTTAAAGATTGTAT+TGG | + | chr2_3:27595357-27595376 | None:intergenic | 20.0% |
!! | GATCGTTTAAATACAAAAAT+TGG | + | chr2_3:27595413-27595432 | None:intergenic | 20.0% |
!! | AAAAATTGAATTTCAAGCTA+TGG | + | chr2_3:27595777-27595796 | None:intergenic | 20.0% |
!! | TCATTATCAATATTCATGAA+TGG | + | chr2_3:27596012-27596031 | None:intergenic | 20.0% |
!! | ATTTAGAGGAGAATTATATA+GGG | + | chr2_3:27596378-27596397 | None:intergenic | 20.0% |
!!! | TAATGATTTCTTTTTGCAAA+AGG | + | chr2_3:27596568-27596587 | None:intergenic | 20.0% |
!!! | TACATTGTTGTCTTTATTTT+TGG | - | chr2_3:27596672-27596691 | Msa0286470:intron | 20.0% |
!!! | AATTTCCAAATTTCTTTTGT+AGG | - | chr2_3:27597071-27597090 | Msa0286470:intron | 20.0% |
!!! | AATGAATAAGGTATATTTTC+TGG | - | chr2_3:27597155-27597174 | Msa0286470:intron | 20.0% |
!!! | ATGAATAAGGTATATTTTCT+GGG | - | chr2_3:27597156-27597175 | Msa0286470:intron | 20.0% |
!! | TTAAGTTACTCTTAACATAT+GGG | + | chr2_3:27597336-27597355 | None:intergenic | 20.0% |
!!! | CTTTTAGTATTTTTTTGAGA+GGG | - | chr2_3:27597840-27597859 | Msa0286470:intron | 20.0% |
!! | ATAAACTAGGAGTTAAATAA+AGG | - | chr2_3:27598108-27598127 | Msa0286470:intron | 20.0% |
!! | AATAATGAAATTGAAGAGTA+TGG | - | chr2_3:27598164-27598183 | Msa0286470:intron | 20.0% |
!!! | ATAATGAAATTGAAGAGTAT+GGG | - | chr2_3:27598165-27598184 | Msa0286470:intron | 20.0% |
!! | TGTAAGAACTAAAATAAGTA+AGG | - | chr2_3:27598480-27598499 | Msa0286470:intron | 20.0% |
!! | GTAAGAACTAAAATAAGTAA+GGG | - | chr2_3:27598481-27598500 | Msa0286470:intron | 20.0% |
!!! | CGGATAACATTATAAAATTT+TGG | + | chr2_3:27598965-27598984 | None:intergenic | 20.0% |
!! | GACTAACATAATGAAATATT+GGG | + | chr2_3:27599310-27599329 | None:intergenic | 20.0% |
!! | TGACTAACATAATGAAATAT+TGG | + | chr2_3:27599311-27599330 | None:intergenic | 20.0% |
!! | AATAAGATTGAAATATACCT+TGG | + | chr2_3:27599591-27599610 | None:intergenic | 20.0% |
!! | GTATATTTCAATCTTATTCA+TGG | - | chr2_3:27599593-27599612 | Msa0286470:intron | 20.0% |
!! | CAACAATAAGATTGTATTAT+CGG | - | chr2_3:27599801-27599820 | Msa0286470:intron | 20.0% |
!! | AATATAATCAGTAACAAATG+AGG | + | chr2_3:27599829-27599848 | None:intergenic | 20.0% |
!! | TTAGATATAAAGTATAGTTG+TGG | - | chr2_3:27599857-27599876 | Msa0286470:intron | 20.0% |
!! | TAGATATAAAGTATAGTTGT+GGG | - | chr2_3:27599858-27599877 | Msa0286470:intron | 20.0% |
! | AAAAAAGTAATGTAAGAGAG+AGG | + | chr2_3:27593397-27593416 | None:intergenic | 25.0% |
! | ACAGAAAATCGTAAGATTTA+GGG | + | chr2_3:27593619-27593638 | None:intergenic | 25.0% |
! | ATCAATTGCTAGAATAGAAA+AGG | - | chr2_3:27593913-27593932 | Msa0286470:intron | 25.0% |
!! | TATAAGCTATGAAGCATTTA+CGG | + | chr2_3:27594127-27594146 | None:intergenic | 25.0% |
!! | TGATTTGAGTTAATGGTTAA+AGG | - | chr2_3:27594232-27594251 | Msa0286470:intron | 25.0% |
! | GAGAAATAAGAAAGAACAAA+AGG | + | chr2_3:27594563-27594582 | None:intergenic | 25.0% |
! | ATAACTTCTTTCTTTCTTGT+AGG | - | chr2_3:27594648-27594667 | Msa0286470:intron | 25.0% |
! | CATCAAATAAAAGGTGATAA+AGG | + | chr2_3:27595214-27595233 | None:intergenic | 25.0% |
! | ACAACACTTCATCAAATAAA+AGG | + | chr2_3:27595223-27595242 | None:intergenic | 25.0% |
! | AAAAATTGGATTTCAAGCTA+TGG | + | chr2_3:27595399-27595418 | None:intergenic | 25.0% |
! | ATAAAGGTCTGATTACTAAA+CGG | + | chr2_3:27595198-27595217 | None:intergenic | 25.0% |
! | TCTTAAGGACACAATAAATT+GGG | + | chr2_3:27596090-27596109 | None:intergenic | 25.0% |
! | TTCTTAAGGACACAATAAAT+TGG | + | chr2_3:27596091-27596110 | None:intergenic | 25.0% |
!! | ACATGTTCTTGATTTTCTTA+AGG | + | chr2_3:27596105-27596124 | None:intergenic | 25.0% |
! | GATTTAGAGGAGAATTATAT+AGG | + | chr2_3:27596379-27596398 | None:intergenic | 25.0% |
!! | ATATTCAAAGCATTTCTTCA+TGG | + | chr2_3:27596403-27596422 | None:intergenic | 25.0% |
!! | GTTTCTTTTTACAACTAGTT+TGG | - | chr2_3:27596521-27596540 | Msa0286470:CDS | 25.0% |
!! | GGATGTTTATGATTGTTATT+AGG | + | chr2_3:27596547-27596566 | None:intergenic | 25.0% |
! | CAAAAAGAAATCATTATGCT+AGG | - | chr2_3:27596572-27596591 | Msa0286470:CDS | 25.0% |
! | TAAATAGATTTCTAACTGGA+CGG | + | chr2_3:27596607-27596626 | None:intergenic | 25.0% |
!!! | TGTCTTTATTTTTGGTTGAA+TGG | - | chr2_3:27596680-27596699 | Msa0286470:intron | 25.0% |
!!! | TTTATTTTTGGTTGAATGGA+GGG | - | chr2_3:27596684-27596703 | Msa0286470:intron | 25.0% |
!! | AAAATTCTTCTTTCTTTTCG+AGG | - | chr2_3:27597024-27597043 | Msa0286470:intron | 25.0% |
!! | AAATTCTTCTTTCTTTTCGA+GGG | - | chr2_3:27597025-27597044 | Msa0286470:intron | 25.0% |
! | TAATGCCTACAAAAGAAATT+TGG | + | chr2_3:27597079-27597098 | None:intergenic | 25.0% |
!! | CTTTCCATTGTTCAAAATTT+TGG | - | chr2_3:27597188-27597207 | Msa0286470:intron | 25.0% |
!! | TAGTCCAAAATTTTGAACAA+TGG | + | chr2_3:27597195-27597214 | None:intergenic | 25.0% |
! | AAGAGTAACTTAACTTTCAT+AGG | - | chr2_3:27597343-27597362 | Msa0286470:intron | 25.0% |
! | ATATTTATGATTTCCATCCA+TGG | - | chr2_3:27597387-27597406 | Msa0286470:intron | 25.0% |
! | GTTAAGTTACTCTTAACATA+TGG | + | chr2_3:27597337-27597356 | None:intergenic | 25.0% |
! | AAGAGTAACTTAACTTTCAT+AGG | - | chr2_3:27597343-27597362 | Msa0286470:intron | 25.0% |
! | ATATTTATGATTTCCATCCA+TGG | - | chr2_3:27597387-27597406 | Msa0286470:intron | 25.0% |
!!! | GCTTTTAGTATTTTTTTGAG+AGG | - | chr2_3:27597839-27597858 | Msa0286470:intron | 25.0% |
! | AGACTAATAATTGTTCATTG+TGG | + | chr2_3:27597909-27597928 | None:intergenic | 25.0% |
! | GTGCTTACTTAATAGAAATT+TGG | - | chr2_3:27598032-27598051 | Msa0286470:intron | 25.0% |
!! | TAATGAAATTGAAGAGTATG+GGG | - | chr2_3:27598166-27598185 | Msa0286470:intron | 25.0% |
!!! | ACAAATACTTTTGAAGATTG+TGG | - | chr2_3:27598377-27598396 | Msa0286470:intron | 25.0% |
!!! | CAAATACTTTTGAAGATTGT+GGG | - | chr2_3:27598378-27598397 | Msa0286470:intron | 25.0% |
! | ACATACTTTAAACTACCAAA+AGG | - | chr2_3:27598536-27598555 | Msa0286470:intron | 25.0% |
! | CATACTTTAAACTACCAAAA+GGG | - | chr2_3:27598537-27598556 | Msa0286470:intron | 25.0% |
! | ATACTTTAAACTACCAAAAG+GGG | - | chr2_3:27598538-27598557 | Msa0286470:intron | 25.0% |
! | CAGAAAATATTGATGAAACT+TGG | - | chr2_3:27599006-27599025 | Msa0286470:intron | 25.0% |
! | TTTCGGATAACATAAATTGT+TGG | + | chr2_3:27599053-27599072 | None:intergenic | 25.0% |
!! | GATTTTCATTTATTCATGAC+AGG | - | chr2_3:27599237-27599256 | Msa0286470:intron | 25.0% |
!!! | ATTCTGTTTTTCTCTTCTTA+TGG | - | chr2_3:27599508-27599527 | Msa0286470:intron | 25.0% |
CACAGAAAATCGTAAGATTT+AGG | + | chr2_3:27593620-27593639 | None:intergenic | 30.0% | |
GCTTCATAGCTTATAATGTT+TGG | - | chr2_3:27594132-27594151 | Msa0286470:intron | 30.0% | |
! | TAGCTTATAATGTTTGGAGT+TGG | - | chr2_3:27594138-27594157 | Msa0286470:intron | 30.0% |
ATCAAATAGTAGAAGGTGAA+GGG | - | chr2_3:27594176-27594195 | Msa0286470:intron | 30.0% | |
GAGTTAATGGTTAAAGGATT+TGG | - | chr2_3:27594238-27594257 | Msa0286470:intron | 30.0% | |
TTAATGGTTAAAGGATTTGG+AGG | - | chr2_3:27594241-27594260 | Msa0286470:intron | 30.0% | |
TATGAGTTAGCAAAGCTTTA+TGG | - | chr2_3:27594371-27594390 | Msa0286470:CDS | 30.0% | |
TTGTATGAAGAAAACTCCAA+GGG | + | chr2_3:27594492-27594511 | None:intergenic | 30.0% | |
ATTGTATGAAGAAAACTCCA+AGG | + | chr2_3:27594493-27594512 | None:intergenic | 30.0% | |
ATTAAAAGAGAGGCAAAAAC+TGG | - | chr2_3:27594813-27594832 | Msa0286470:intron | 30.0% | |
GAATAAGTGTATGTTTGATC+TGG | - | chr2_3:27595001-27595020 | Msa0286470:intron | 30.0% | |
AAAGCAGTTTCAAGATCTTA+TGG | + | chr2_3:27595121-27595140 | None:intergenic | 30.0% | |
TTACTAAATGTGTGTTCCTT+TGG | + | chr2_3:27595186-27595205 | None:intergenic | 30.0% | |
AGAAGTTTCGTATTTAGTTG+AGG | - | chr2_3:27595327-27595346 | Msa0286470:intron | 30.0% | |
TAAAGGTCTGATTACTAAAC+GGG | + | chr2_3:27595577-27595596 | None:intergenic | 30.0% | |
CATCAAACAAAAGGTGATAA+AGG | + | chr2_3:27595594-27595613 | None:intergenic | 30.0% | |
ACTATAGTTGAAGGTTGTAT+TGG | + | chr2_3:27595735-27595754 | None:intergenic | 30.0% | |
ATGTCAGTAACTATAGTTGA+AGG | + | chr2_3:27595744-27595763 | None:intergenic | 30.0% | |
TAGCACATTAAGTCAAGAAT+GGG | + | chr2_3:27595959-27595978 | None:intergenic | 30.0% | |
TTAGCACATTAAGTCAAGAA+TGG | + | chr2_3:27595960-27595979 | None:intergenic | 30.0% | |
AATCAAGAACATGTTTGCTT+TGG | - | chr2_3:27596111-27596130 | Msa0286470:intron | 30.0% | |
ATCAAGAACATGTTTGCTTT+GGG | - | chr2_3:27596112-27596131 | Msa0286470:intron | 30.0% | |
AAAGCTAAAATGCTTGTAGT+TGG | + | chr2_3:27596170-27596189 | None:intergenic | 30.0% | |
! | AACAATTGACTTTGACACAA+AGG | + | chr2_3:27596200-27596219 | None:intergenic | 30.0% |
TTTGTGTCAAAGTCAATTGT+TGG | - | chr2_3:27596199-27596218 | Msa0286470:intron | 30.0% | |
ATTTCTTCATGGAGATTTAG+AGG | + | chr2_3:27596392-27596411 | None:intergenic | 30.0% | |
AATTACAAGCAAGAAAGAGT+AGG | - | chr2_3:27596462-27596481 | Msa0286470:intron | 30.0% | |
AAAAGAAACATTTACACCAG+TGG | + | chr2_3:27596510-27596529 | None:intergenic | 30.0% | |
AAAGAAATCATTATGCTAGG+CGG | - | chr2_3:27596575-27596594 | Msa0286470:CDS | 30.0% | |
!!! | CTTTATTTTTGGTTGAATGG+AGG | - | chr2_3:27596683-27596702 | Msa0286470:intron | 30.0% |
ATTTAATAGTGCTTCCAGTT+GGG | + | chr2_3:27596801-27596820 | None:intergenic | 30.0% | |
AATTTAATAGTGCTTCCAGT+TGG | + | chr2_3:27596802-27596821 | None:intergenic | 30.0% | |
! | TTGCTAAATAATGAAGTGTC+TGG | - | chr2_3:27596880-27596899 | Msa0286470:intron | 30.0% |
TTGTATTGAAGTGTAAACCA+TGG | + | chr2_3:27597407-27597426 | None:intergenic | 30.0% | |
GGAAATGTTTGACAAAAAAC+TGG | - | chr2_3:27597482-27597501 | Msa0286470:intron | 30.0% | |
TTGTATTGAAGTGTAAACCA+TGG | + | chr2_3:27597407-27597426 | None:intergenic | 30.0% | |
ACTTTAGATTCAATGCAAAC+AGG | + | chr2_3:27597579-27597598 | None:intergenic | 30.0% | |
! | TAATGTGTTAGATGCTTTTC+TGG | - | chr2_3:27597602-27597621 | Msa0286470:intron | 30.0% |
!!! | TTAGTATTTTTTTGAGAGGG+AGG | - | chr2_3:27597843-27597862 | Msa0286470:intron | 30.0% |
! | CCTTCAATTAGTTCTTTATC+TGG | + | chr2_3:27598081-27598100 | None:intergenic | 30.0% |
CCAGATAAAGAACTAATTGA+AGG | - | chr2_3:27598078-27598097 | Msa0286470:intron | 30.0% | |
TGAAGGAACAACAATAAACT+AGG | - | chr2_3:27598095-27598114 | Msa0286470:intron | 30.0% | |
AAGAGAGAAAAAAACACAGA+AGG | - | chr2_3:27598332-27598351 | Msa0286470:intron | 30.0% | |
! | TTAGTTCTTACACTTACGTT+TGG | + | chr2_3:27598472-27598491 | None:intergenic | 30.0% |
ATTACACATGTCAATTAGCT+TGG | - | chr2_3:27598835-27598854 | Msa0286470:intron | 30.0% | |
ATATAATCTAATGCTATGGC+TGG | + | chr2_3:27598929-27598948 | None:intergenic | 30.0% | |
GTCATTTATGTATATGTACC+TGG | + | chr2_3:27599158-27599177 | None:intergenic | 30.0% | |
ATGAAAATCAGATATGACAG+AGG | + | chr2_3:27599226-27599245 | None:intergenic | 30.0% | |
AAGAAGAGAAAAACAGAATC+AGG | + | chr2_3:27599507-27599526 | None:intergenic | 30.0% | |
! | TTCAAGTTCTTCAACATCTT+GGG | + | chr2_3:27599701-27599720 | None:intergenic | 30.0% |
!! | TTTCAAGTTCTTCAACATCT+TGG | + | chr2_3:27599702-27599721 | None:intergenic | 30.0% |
TGAAGAACTTGAAAAGAGAT+TGG | - | chr2_3:27599708-27599727 | Msa0286470:intron | 30.0% | |
AATTCTGCGTTTGTTTGTTT+AGG | - | chr2_3:27599913-27599932 | Msa0286470:intron | 30.0% | |
TCCTAACTAAATGTTTCAAG+TGG | - | chr2_3:27599965-27599984 | Msa0286470:five_prime_UTR | 30.0% | |
AGAGAATTTATTTGCAGCTA+AGG | - | chr2_3:27600107-27600126 | Msa0286470:intron | 30.0% | |
TAACATCCTCTGCTTGAATT+AGG | - | chr2_3:27593513-27593532 | Msa0286470:three_prime_UTR | 35.0% | |
CTTGAATGTAACCAATGTGT+CGG | + | chr2_3:27594061-27594080 | None:intergenic | 35.0% | |
CCAAATTATTACCGTGTTGA+CGG | - | chr2_3:27594093-27594112 | Msa0286470:intron | 35.0% | |
AGTTGCGATCAAATAGTAGA+AGG | - | chr2_3:27594169-27594188 | Msa0286470:intron | 35.0% | |
GATCAAATAGTAGAAGGTGA+AGG | - | chr2_3:27594175-27594194 | Msa0286470:intron | 35.0% | |
! | GCTCATCTGATTTGAGTTAA+TGG | - | chr2_3:27594225-27594244 | Msa0286470:CDS | 35.0% |
GACATTGATAGAAGTTAGCA+AGG | - | chr2_3:27594597-27594616 | Msa0286470:intron | 35.0% | |
AGTTGCAGAGATTAAAAGAG+AGG | - | chr2_3:27594803-27594822 | Msa0286470:intron | 35.0% | |
! | TTGGGTGTTTTCATCTTAAC+TGG | - | chr2_3:27594898-27594917 | Msa0286470:intron | 35.0% |
! | TGGGTGTTTTCATCTTAACT+GGG | - | chr2_3:27594899-27594918 | Msa0286470:intron | 35.0% |
TTCATCTTAACTGGGATCAA+AGG | - | chr2_3:27594907-27594926 | Msa0286470:intron | 35.0% | |
CGATGAGTTTGACAAAATCA+CGG | + | chr2_3:27595059-27595078 | None:intergenic | 35.0% | |
!! | ACATCAATTGGTAGCTTTGT+TGG | + | chr2_3:27595163-27595182 | None:intergenic | 35.0% |
! | AGATTATGAGCATTGCCAAT+AGG | - | chr2_3:27595277-27595296 | Msa0286470:intron | 35.0% |
TGTAAAAACTTTGTTGCCTC+TGG | + | chr2_3:27595460-27595479 | None:intergenic | 35.0% | |
ACGACACTTCATCAAACAAA+AGG | + | chr2_3:27595603-27595622 | None:intergenic | 35.0% | |
AGAAGCTCCATATTTAGTTG+AGG | - | chr2_3:27595705-27595724 | Msa0286470:intron | 35.0% | |
TAGTTGAAGGTTGTATTGGA+TGG | + | chr2_3:27595731-27595750 | None:intergenic | 35.0% | |
! | CAAGTACGTATAAGAGTATG+AGG | - | chr2_3:27595856-27595875 | Msa0286470:intron | 35.0% |
!! | TAGAGGGAATTTTCTAGAAG+TGG | + | chr2_3:27595936-27595955 | None:intergenic | 35.0% |
TTAAGTCAAGAATGGGTAGA+GGG | + | chr2_3:27595952-27595971 | None:intergenic | 35.0% | |
ATTAAGTCAAGAATGGGTAG+AGG | + | chr2_3:27595953-27595972 | None:intergenic | 35.0% | |
TCCTTTATTGCTTGTACTCT+TGG | - | chr2_3:27595986-27596005 | Msa0286470:intron | 35.0% | |
! | ACACAATAAATTGGGTTGCA+AGG | + | chr2_3:27596082-27596101 | None:intergenic | 35.0% |
ACATTACAACTGCAACAGTT+GGG | + | chr2_3:27596754-27596773 | None:intergenic | 35.0% | |
TACATTACAACTGCAACAGT+TGG | + | chr2_3:27596755-27596774 | None:intergenic | 35.0% | |
TCATGCATTCCAAATCAGTT+CGG | + | chr2_3:27596844-27596863 | None:intergenic | 35.0% | |
! | ATAATGAAGTGTCTGGTTAC+AGG | - | chr2_3:27596887-27596906 | Msa0286470:intron | 35.0% |
CAACAGATAACTAATCTGCA+GGG | - | chr2_3:27596951-27596970 | Msa0286470:intron | 35.0% | |
AGAATCAGTTTATGACCCAA+AGG | - | chr2_3:27597250-27597269 | Msa0286470:intron | 35.0% | |
GAATCAGTTTATGACCCAAA+GGG | - | chr2_3:27597251-27597270 | Msa0286470:intron | 35.0% | |
TTTGTTTGCTTCTTTGGCAA+AGG | + | chr2_3:27597304-27597323 | None:intergenic | 35.0% | |
!! | TGTTGCTTTGTTTGCTTCTT+TGG | + | chr2_3:27597310-27597329 | None:intergenic | 35.0% |
ATTGAAGTGTAAACCATGGA+TGG | + | chr2_3:27597403-27597422 | None:intergenic | 35.0% | |
ATTGAAGTGTAAACCATGGA+TGG | + | chr2_3:27597403-27597422 | None:intergenic | 35.0% | |
! | ATTTGCTGAGAAGATAAGCA+AGG | + | chr2_3:27597688-27597707 | None:intergenic | 35.0% |
TTGCTTATCTTCTCAGCAAA+TGG | - | chr2_3:27597687-27597706 | Msa0286470:intron | 35.0% | |
TATTAAGTAAGCACCACCTT+TGG | + | chr2_3:27598026-27598045 | None:intergenic | 35.0% | |
TTGTGAAACTGTCATCAAGA+TGG | - | chr2_3:27598200-27598219 | Msa0286470:intron | 35.0% | |
ACTATACTGAAGACGATAGT+GGG | - | chr2_3:27598265-27598284 | Msa0286470:intron | 35.0% | |
TCAGAATATTGCTATGACGT+GGG | - | chr2_3:27598504-27598523 | Msa0286470:intron | 35.0% | |
TTCTAGCAAAAGCAAGGTAA+TGG | - | chr2_3:27598630-27598649 | Msa0286470:intron | 35.0% | |
TTCTAGCAAAAGCAAGGTAT+TGG | - | chr2_3:27598723-27598742 | Msa0286470:intron | 35.0% | |
CATCATCTCAATCTGCATTT+CGG | + | chr2_3:27599070-27599089 | None:intergenic | 35.0% | |
TTTAGACAAAGATGAAGCTG+AGG | - | chr2_3:27599110-27599129 | Msa0286470:intron | 35.0% | |
TGACAGGTTCTTGATGAAAT+TGG | - | chr2_3:27599253-27599272 | Msa0286470:intron | 35.0% | |
! | AAATCACGTGTTTTCACACA+AGG | - | chr2_3:27599345-27599364 | Msa0286470:intron | 35.0% |
CGAATTGTTAGTTCATAGCA+TGG | - | chr2_3:27599378-27599397 | Msa0286470:intron | 35.0% | |
GCCACTTGAAACATTTAGTT+AGG | + | chr2_3:27599969-27599988 | None:intergenic | 35.0% | |
! | GTTGAATTTTATCTGTACCG+CGG | - | chr2_3:27600038-27600057 | Msa0286470:intron | 35.0% |
! | TTGAATTTTATCTGTACCGC+GGG | - | chr2_3:27600039-27600058 | Msa0286470:intron | 35.0% |
ATAAGGTGTATGAGATCACA+TGG | - | chr2_3:27600069-27600088 | Msa0286470:intron | 35.0% | |
CCAAAACCTAATTCAAGCAG+AGG | + | chr2_3:27593522-27593541 | None:intergenic | 40.0% | |
! | CCTCTGCTTGAATTAGGTTT+TGG | - | chr2_3:27593519-27593538 | Msa0286470:three_prime_UTR | 40.0% |
AAGAAGAAAACCACACCCAA+AGG | - | chr2_3:27593566-27593585 | Msa0286470:three_prime_UTR | 40.0% | |
AGAGAGATGAACGAACCTTT+GGG | + | chr2_3:27593584-27593603 | None:intergenic | 40.0% | |
AAGAGAGATGAACGAACCTT+TGG | + | chr2_3:27593585-27593604 | None:intergenic | 40.0% | |
GAAATGTCTGTTGCAACTAG+AGG | - | chr2_3:27593765-27593784 | Msa0286470:CDS | 40.0% | |
CCGTCAACACGGTAATAATT+TGG | + | chr2_3:27594096-27594115 | None:intergenic | 40.0% | |
AAATAGTAGAAGGTGAAGGG+TGG | - | chr2_3:27594179-27594198 | Msa0286470:intron | 40.0% | |
AATAGTAGAAGGTGAAGGGT+GGG | - | chr2_3:27594180-27594199 | Msa0286470:intron | 40.0% | |
TTAAAGGATTTGGAGGTCCT+TGG | - | chr2_3:27594248-27594267 | Msa0286470:intron | 40.0% | |
! | AGCTTTATGGCACTCACAAA+TGG | - | chr2_3:27594384-27594403 | Msa0286470:CDS | 40.0% |
TTTACATTTACCTCCCTCCA+AGG | - | chr2_3:27594408-27594427 | Msa0286470:CDS | 40.0% | |
TTACATTTACCTCCCTCCAA+GGG | - | chr2_3:27594409-27594428 | Msa0286470:CDS | 40.0% | |
TGAAGAAAACTCCAAGGGTT+TGG | + | chr2_3:27594487-27594506 | None:intergenic | 40.0% | |
AGAGATAGCATCACTTCAGA+TGG | - | chr2_3:27594680-27594699 | Msa0286470:intron | 40.0% | |
CAAGGCAGTTAAGCACTAAA+AGG | + | chr2_3:27594762-27594781 | None:intergenic | 40.0% | |
! | GCAACTAACTTCTTTTCCTG+CGG | + | chr2_3:27594789-27594808 | None:intergenic | 40.0% |
AGAGGCAAAAACTGGAAATG+AGG | - | chr2_3:27594821-27594840 | Msa0286470:intron | 40.0% | |
TGTTTGATCTGGCAGTTGAA+TGG | - | chr2_3:27595012-27595031 | Msa0286470:intron | 40.0% | |
GTTTGACAAAATCACGGTGT+GGG | + | chr2_3:27595053-27595072 | None:intergenic | 40.0% | |
AGTTTGACAAAATCACGGTG+TGG | + | chr2_3:27595054-27595073 | None:intergenic | 40.0% | |
!! | TTGGTAGCTTTGTTGGTTAC+AGG | + | chr2_3:27595156-27595175 | None:intergenic | 40.0% |
AGCTACCAATTGATGTCCAA+AGG | - | chr2_3:27595167-27595186 | Msa0286470:intron | 40.0% | |
GTGTTCCTTTGGACATCAAT+TGG | + | chr2_3:27595175-27595194 | None:intergenic | 40.0% | |
! | TTATGAGCATTGCCAATAGG+CGG | - | chr2_3:27595280-27595299 | Msa0286470:intron | 40.0% |
!!! | ATTGCCAATAGGCGGTTTTT+TGG | - | chr2_3:27595288-27595307 | Msa0286470:intron | 40.0% |
! | CAAGTGCGTATAAGAGTATG+AGG | - | chr2_3:27595480-27595499 | Msa0286470:intron | 40.0% |
ATGCAGTATCAGTCATCGAT+TGG | + | chr2_3:27595513-27595532 | None:intergenic | 40.0% | |
TCTGATTACTAAACGGGTAG+GGG | + | chr2_3:27595571-27595590 | None:intergenic | 40.0% | |
GTCTGATTACTAAACGGGTA+GGG | + | chr2_3:27595572-27595591 | None:intergenic | 40.0% | |
! | AGATTATGAGCATTGCCAGT+AGG | - | chr2_3:27595656-27595675 | Msa0286470:intron | 40.0% |
TGGATGGCCTCAACTAAATA+TGG | + | chr2_3:27595715-27595734 | None:intergenic | 40.0% | |
GAATTTCAAGCTATGGCTCA+AGG | + | chr2_3:27595770-27595789 | None:intergenic | 40.0% | |
GTTCAGTTTCTTACTACTCC+AGG | - | chr2_3:27595817-27595836 | Msa0286470:intron | 40.0% | |
ATGCAGTATTAGTCACCGAT+TGG | + | chr2_3:27595889-27595908 | None:intergenic | 40.0% | |
!! | GGGAATTTTCTAGAAGTGGT+GGG | + | chr2_3:27595932-27595951 | None:intergenic | 40.0% |
!! | AGGGAATTTTCTAGAAGTGG+TGG | + | chr2_3:27595933-27595952 | None:intergenic | 40.0% |
! | GCCAAGAGTACAAGCAATAA+AGG | + | chr2_3:27595990-27596009 | None:intergenic | 40.0% |
!! | GTTTGCTTTGGGAAATGAAG+AGG | - | chr2_3:27596123-27596142 | Msa0286470:intron | 40.0% |
TATGTTGAGACGTCTGTTGA+AGG | + | chr2_3:27596230-27596249 | None:intergenic | 40.0% | |
GAATAAGAGGTCCTTAGTTG+AGG | + | chr2_3:27596346-27596365 | None:intergenic | 40.0% | |
AGGGATTCTGCTTGAATAAG+AGG | + | chr2_3:27596359-27596378 | None:intergenic | 40.0% | |
AAACATTTACACCAGTGGCA+AGG | + | chr2_3:27596505-27596524 | None:intergenic | 40.0% | |
TGTGTGTATCCGAACTGATT+TGG | - | chr2_3:27596832-27596851 | Msa0286470:intron | 40.0% | |
ACAGGCTTCTACTAAAATCC+TGG | - | chr2_3:27596905-27596924 | Msa0286470:intron | 40.0% | |
CTTCTACTAAAATCCTGGCT+CGG | - | chr2_3:27596910-27596929 | Msa0286470:intron | 40.0% | |
! | CCTGCAGATTAGTTATCTGT+TGG | + | chr2_3:27596953-27596972 | None:intergenic | 40.0% |
CCAACAGATAACTAATCTGC+AGG | - | chr2_3:27596950-27596969 | Msa0286470:intron | 40.0% | |
CAAGCACTTCAATCTCTACA+GGG | - | chr2_3:27597103-27597122 | Msa0286470:intron | 40.0% | |
TTCAATCTCTACAGGGATGA+AGG | - | chr2_3:27597110-27597129 | Msa0286470:intron | 40.0% | |
TCAATCTCTACAGGGATGAA+GGG | - | chr2_3:27597111-27597130 | Msa0286470:intron | 40.0% | |
AGCAATGGTGGCAATGAATA+AGG | - | chr2_3:27597143-27597162 | Msa0286470:intron | 40.0% | |
GGAAATGTTTGACAGAAGAC+TGG | - | chr2_3:27597364-27597383 | Msa0286470:intron | 40.0% | |
TCATTGTGGTGTGCAATCTT+TGG | + | chr2_3:27597895-27597914 | None:intergenic | 40.0% | |
TTTCGCCAGTATTAGACTGT+TGG | - | chr2_3:27597954-27597973 | Msa0286470:intron | 40.0% | |
TTCGCCAGTATTAGACTGTT+GGG | - | chr2_3:27597955-27597974 | Msa0286470:intron | 40.0% | |
AGTTCCCAACAGTCTAATAC+TGG | + | chr2_3:27597962-27597981 | None:intergenic | 40.0% | |
AGCATTGTATGATCCACCAA+AGG | - | chr2_3:27598007-27598026 | Msa0286470:intron | 40.0% | |
ATTGTATGATCCACCAAAGG+TGG | - | chr2_3:27598010-27598029 | Msa0286470:intron | 40.0% | |
CACTATCGTCTTCAGTATAG+TGG | + | chr2_3:27598266-27598285 | None:intergenic | 40.0% | |
CACTATACTGAAGACGATAG+TGG | - | chr2_3:27598264-27598283 | Msa0286470:intron | 40.0% | |
AAACACAGAAGGAGAACTTG+AGG | - | chr2_3:27598343-27598362 | Msa0286470:intron | 40.0% | |
GTCAGAATATTGCTATGACG+TGG | - | chr2_3:27598503-27598522 | Msa0286470:intron | 40.0% | |
GGAAACTTGTCACAGCAATT+GGG | - | chr2_3:27598559-27598578 | Msa0286470:intron | 40.0% | |
GAAACTTGTCACAGCAATTG+GGG | - | chr2_3:27598560-27598579 | Msa0286470:intron | 40.0% | |
ACTCAACCAGCTTCAATTTG+TGG | - | chr2_3:27598693-27598712 | Msa0286470:CDS | 40.0% | |
TACTCTGTTGTACTCAACCA+CGG | - | chr2_3:27598682-27598701 | Msa0286470:CDS | 40.0% | |
! | CTGCTTTAAGTACTACCATG+AGG | + | chr2_3:27598903-27598922 | None:intergenic | 40.0% |
CTCATGGTAGTACTTAAAGC+AGG | - | chr2_3:27598901-27598920 | Msa0286470:intron | 40.0% | |
CATCATCTCAAACTGCATCT+CGG | + | chr2_3:27598985-27599004 | None:intergenic | 40.0% | |
ATCAGAAGAACTCACTAACC+AGG | - | chr2_3:27599137-27599156 | Msa0286470:intron | 40.0% | |
GGTTCTTGATGAAATTGGAG+TGG | - | chr2_3:27599258-27599277 | Msa0286470:intron | 40.0% | |
ATTGGGCTCAAAACAAACCT+GGG | + | chr2_3:27599293-27599312 | None:intergenic | 40.0% | |
TATTGGGCTCAAAACAAACC+TGG | + | chr2_3:27599294-27599313 | None:intergenic | 40.0% | |
CCAACTACTCGAAAACTCTT+AGG | + | chr2_3:27599426-27599445 | None:intergenic | 40.0% | |
!!! | CCTAAGAGTTTTCGAGTAGT+TGG | - | chr2_3:27599423-27599442 | Msa0286470:intron | 40.0% |
TAGTTATCTTCTGCTCCGAA+AGG | - | chr2_3:27599531-27599550 | Msa0286470:intron | 40.0% | |
! | TGGCAGTCAATATGCTACTT+CGG | - | chr2_3:27599985-27600004 | Msa0286470:five_prime_UTR | 40.0% |
! | AGTCAATATGCTACTTCGGT+CGG | - | chr2_3:27599989-27600008 | Msa0286470:five_prime_UTR | 40.0% |
TGATCTCATACACCTTATGC+AGG | + | chr2_3:27600067-27600086 | None:intergenic | 40.0% | |
TAAGAGAGAGGAGAGACCTT+GGG | + | chr2_3:27593385-27593404 | None:intergenic | 45.0% | |
CATCGACACTTCACACATTG+AGG | - | chr2_3:27594030-27594049 | Msa0286470:intron | 45.0% | |
CGGACATTTAACCGTCAACA+CGG | + | chr2_3:27594107-27594126 | None:intergenic | 45.0% | |
ATAGTAGAAGGTGAAGGGTG+GGG | - | chr2_3:27594181-27594200 | Msa0286470:intron | 45.0% | |
TTTGTCCCGCATTTGTACCA+AGG | + | chr2_3:27594268-27594287 | None:intergenic | 45.0% | |
! | TAGTGGACAGGTCTTGGATA+TGG | + | chr2_3:27594462-27594481 | None:intergenic | 45.0% |
GATAGCATCACTTCAGATGG+AGG | - | chr2_3:27594683-27594702 | Msa0286470:intron | 45.0% | |
! | TTCTTTTCCTGCGGTACACA+AGG | + | chr2_3:27594780-27594799 | None:intergenic | 45.0% |
ATCCACTCTCTCTCTAGTTG+AGG | - | chr2_3:27594979-27594998 | Msa0286470:intron | 45.0% | |
TTCCTCAACTAGAGAGAGAG+TGG | + | chr2_3:27594984-27595003 | None:intergenic | 45.0% | |
GGATTTCAAGCTATGGCTTG+AGG | + | chr2_3:27595392-27595411 | None:intergenic | 45.0% | |
TCAGTTTCTGACTACTCCAG+AGG | - | chr2_3:27595441-27595460 | Msa0286470:intron | 45.0% | |
! | CAGTATCAGTCATCGATTGG+AGG | + | chr2_3:27595510-27595529 | None:intergenic | 45.0% |
!! | GGGGATTTTCTAGAAGTGGT+GGG | + | chr2_3:27595550-27595569 | None:intergenic | 45.0% |
!! | TAGGGGGGATTTTCTAGAAG+TGG | + | chr2_3:27595554-27595573 | None:intergenic | 45.0% |
TGATTACTAAACGGGTAGGG+GGG | + | chr2_3:27595569-27595588 | None:intergenic | 45.0% | |
CTGATTACTAAACGGGTAGG+GGG | + | chr2_3:27595570-27595589 | None:intergenic | 45.0% | |
GGTCTGATTACTAAACGGGT+AGG | + | chr2_3:27595573-27595592 | None:intergenic | 45.0% | |
! | TTATGAGCATTGCCAGTAGG+TGG | - | chr2_3:27595659-27595678 | Msa0286470:intron | 45.0% |
! | CATTGCCAGTAGGTGGTTTT+TGG | - | chr2_3:27595666-27595685 | Msa0286470:intron | 45.0% |
TGTCTAGAGACTTTGTTGCC+TGG | + | chr2_3:27595838-27595857 | None:intergenic | 45.0% | |
GTATGAGGTTGACCTCCAAT+CGG | - | chr2_3:27595495-27595514 | Msa0286470:intron | 45.0% | |
! | CAGTATTAGTCACCGATTGG+AGG | + | chr2_3:27595886-27595905 | None:intergenic | 45.0% |
GGAGTTGCTTATTCGCAACA+AGG | + | chr2_3:27596149-27596168 | None:intergenic | 45.0% | |
AGTCGTACAGTCTTCGTTTG+TGG | - | chr2_3:27596254-27596273 | Msa0286470:intron | 45.0% | |
AACCATCTCTCGTGCTTGAT+TGG | + | chr2_3:27596286-27596305 | None:intergenic | 45.0% | |
TGCACACCATTCCTCAACTA+AGG | - | chr2_3:27596332-27596351 | Msa0286470:intron | 45.0% | |
AGAGGTCCTTAGTTGAGGAA+TGG | + | chr2_3:27596341-27596360 | None:intergenic | 45.0% | |
AATCATTATGCTAGGCGGAG+AGG | - | chr2_3:27596580-27596599 | Msa0286470:intron | 45.0% | |
ATCATTATGCTAGGCGGAGA+GGG | - | chr2_3:27596581-27596600 | Msa0286470:intron | 45.0% | |
TACTGTAGTATCTGCCCAAC+TGG | - | chr2_3:27596784-27596803 | Msa0286470:intron | 45.0% | |
GCAAGCACTTCAATCTCTAC+AGG | - | chr2_3:27597102-27597121 | Msa0286470:intron | 45.0% | |
CATTGCCACCATTGCTTTAG+TGG | + | chr2_3:27597139-27597158 | None:intergenic | 45.0% | |
GTTTATGACCCAAAGGGTAG+AGG | - | chr2_3:27597257-27597276 | Msa0286470:intron | 45.0% | |
CAAGACAACCTCTACCCTTT+GGG | + | chr2_3:27597268-27597287 | None:intergenic | 45.0% | |
TCAAGACAACCTCTACCCTT+TGG | + | chr2_3:27597269-27597288 | None:intergenic | 45.0% | |
ATCTTCTCAGCAAATGGCAC+CGG | - | chr2_3:27597693-27597712 | Msa0286470:intron | 45.0% | |
ATCACTTTAGCCTGCTTTGC+CGG | + | chr2_3:27597715-27597734 | None:intergenic | 45.0% | |
!!! | CCAGTTGTGCTGATTGCTTT+TGG | + | chr2_3:27597747-27597766 | None:intergenic | 45.0% |
CCAAAAGCAATCAGCACAAC+TGG | - | chr2_3:27597744-27597763 | Msa0286470:intron | 45.0% | |
ATCAGCACAACTGGACATGA+CGG | - | chr2_3:27597753-27597772 | Msa0286470:intron | 45.0% | |
ATACTGGCGAAACACTGGAT+TGG | + | chr2_3:27597946-27597965 | None:intergenic | 45.0% | |
GTCTAATACTGGCGAAACAC+TGG | + | chr2_3:27597951-27597970 | None:intergenic | 45.0% | |
TAAGTAAGCACCACCTTTGG+TGG | + | chr2_3:27598023-27598042 | None:intergenic | 45.0% | |
ATCGTCTTCAGTATAGTGGC+AGG | + | chr2_3:27598262-27598281 | None:intergenic | 45.0% | |
ACAGAAGGAGAACTTGAGGT+TGG | - | chr2_3:27598347-27598366 | Msa0286470:intron | 45.0% | |
GAAGATTGTGGGCAATAGAG+AGG | - | chr2_3:27598389-27598408 | Msa0286470:intron | 45.0% | |
! | CTGTGACAAGTTTCCCCTTT+TGG | + | chr2_3:27598554-27598573 | None:intergenic | 45.0% |
GGGAAACTTGTCACAGCAAT+TGG | - | chr2_3:27598558-27598577 | Msa0286470:intron | 45.0% | |
GAGGTCACAGGTTCAATTTG+TGG | - | chr2_3:27598600-27598619 | Msa0286470:intron | 45.0% | |
ACCAGCTTCTAGCAAAAGCA+AGG | - | chr2_3:27598624-27598643 | Msa0286470:intron | 45.0% | |
!! | ACCTTGCTTTTGCTAGAAGC+TGG | + | chr2_3:27598628-27598647 | None:intergenic | 45.0% |
GGTTGAGTACAACAGAGTAC+TGG | + | chr2_3:27598681-27598700 | None:intergenic | 45.0% | |
CTGGTTCCACAAATTGAAGC+TGG | + | chr2_3:27598702-27598721 | None:intergenic | 45.0% | |
ACCAGCTTCTAGCAAAAGCA+AGG | - | chr2_3:27598624-27598643 | Msa0286470:intron | 45.0% | |
!! | ACCTTGCTTTTGCTAGAAGC+TGG | + | chr2_3:27598628-27598647 | None:intergenic | 45.0% |
GGTTGAGTACAACAGAGTAC+TGG | + | chr2_3:27598681-27598700 | None:intergenic | 45.0% | |
AGTACTACCATGAGGCTATC+AGG | + | chr2_3:27598895-27598914 | None:intergenic | 45.0% | |
TATCTTCTGCTCCGAAAGGT+CGG | - | chr2_3:27599535-27599554 | Msa0286470:intron | 45.0% | |
CTTGAAGCAATCCGACCTTT+CGG | + | chr2_3:27599549-27599568 | None:intergenic | 45.0% | |
ATGCTGAAAATGCTGCTCCA+AGG | - | chr2_3:27599571-27599590 | Msa0286470:intron | 45.0% | |
TCTGCATGCACAAAGCAACA+TGG | + | chr2_3:27599671-27599690 | None:intergenic | 45.0% | |
!! | TTTGTAATTAAAAAAAAAAA+AGG | + | chr2_3:27593423-27593442 | None:intergenic | 5.0% |
!!! | ATATTATATTCATTATTTTA+AGG | + | chr2_3:27593989-27594008 | None:intergenic | 5.0% |
GGAGCGTGCTGTGTATTGTT+GGG | + | chr2_3:27593351-27593370 | None:intergenic | 50.0% | |
GTAAGAGAGAGGAGAGACCT+TGG | + | chr2_3:27593386-27593405 | None:intergenic | 50.0% | |
GATGAACGAACCTTTGGGTG+TGG | + | chr2_3:27593579-27593598 | None:intergenic | 50.0% | |
TTGAGGTGTGTCCGACACAT+TGG | - | chr2_3:27594047-27594066 | Msa0286470:intron | 50.0% | |
TAGTAGAAGGTGAAGGGTGG+GGG | - | chr2_3:27594182-27594201 | Msa0286470:intron | 50.0% | |
GGAGGTCCTTGGTACAAATG+CGG | - | chr2_3:27594259-27594278 | Msa0286470:intron | 50.0% | |
GAGGTCCTTGGTACAAATGC+GGG | - | chr2_3:27594260-27594279 | Msa0286470:intron | 50.0% | |
GTCTTGGATATGGAGGTTCC+AGG | + | chr2_3:27594452-27594471 | None:intergenic | 50.0% | |
TGGACAGGTCTTGGATATGG+AGG | + | chr2_3:27594459-27594478 | None:intergenic | 50.0% | |
! | TTGGTCTAGTGGACAGGTCT+TGG | + | chr2_3:27594468-27594487 | None:intergenic | 50.0% |
! | AAGGGTTTGGTCTAGTGGAC+AGG | + | chr2_3:27594474-27594493 | None:intergenic | 50.0% |
TGTCCACTAGACCAAACCCT+TGG | - | chr2_3:27594473-27594492 | Msa0286470:intron | 50.0% | |
! | ACTCCAAGGGTTTGGTCTAG+TGG | + | chr2_3:27594479-27594498 | None:intergenic | 50.0% |
TTAACTGCCTTGTGTACCGC+AGG | - | chr2_3:27594770-27594789 | Msa0286470:intron | 50.0% | |
CACGCCAAAAAACCGCCTAT+TGG | + | chr2_3:27595295-27595314 | None:intergenic | 50.0% | |
!! | GGGGGATTTTCTAGAAGTGG+TGG | + | chr2_3:27595551-27595570 | None:intergenic | 50.0% |
GCACACCAAAAACCACCTAC+TGG | + | chr2_3:27595674-27595693 | None:intergenic | 50.0% | |
CACCAATCAAGCACGAGAGA+TGG | - | chr2_3:27596281-27596300 | Msa0286470:intron | 50.0% | |
ACCAGTGGCAAGGATGAACA+CGG | + | chr2_3:27596495-27596514 | None:intergenic | 50.0% | |
!! | GAAGGGTGCCACTAAAGCAA+TGG | - | chr2_3:27597128-27597147 | Msa0286470:intron | 50.0% |
!! | ACTGAAGACGATAGTGGGTG+TGG | - | chr2_3:27598270-27598289 | Msa0286470:intron | 50.0% |
! | AGTGGGTGTGGTTTTTGCAC+TGG | - | chr2_3:27598282-27598301 | Msa0286470:intron | 50.0% |
TGGAGTGGATATTGCATCCC+AGG | - | chr2_3:27599273-27599292 | Msa0286470:intron | 50.0% | |
CGAAAGGTCGGATTGCTTCA+AGG | - | chr2_3:27599547-27599566 | Msa0286470:intron | 50.0% | |
GCATGCACAAAGCAACATGG+AGG | + | chr2_3:27599668-27599687 | None:intergenic | 50.0% | |
! | GGGAGCGTGCTGTGTATTGT+TGG | + | chr2_3:27593352-27593371 | None:intergenic | 55.0% |
AGAGGAGAGACCTTGGGCTT+GGG | + | chr2_3:27593379-27593398 | None:intergenic | 55.0% | |
ACCGTGTTCATCCTTGCCAC+TGG | - | chr2_3:27596491-27596510 | Msa0286470:intron | 55.0% | |
AGGGAAGTCGTGCACAGATC+AGG | - | chr2_3:27596970-27596989 | Msa0286470:intron | 55.0% | |
GGGAAGTCGTGCACAGATCA+GGG | - | chr2_3:27596971-27596990 | Msa0286470:intron | 55.0% | |
GGAAGTCGTGCACAGATCAG+GGG | - | chr2_3:27596972-27596991 | Msa0286470:intron | 55.0% | |
GGGTGTAGCAACTCACACAC+AGG | - | chr2_3:27596992-27597011 | Msa0286470:intron | 55.0% | |
!! | GGGTGCCACTAAAGCAATGG+TGG | - | chr2_3:27597131-27597150 | Msa0286470:intron | 55.0% |
TGGGGTTGCACCATGTGACT+AGG | - | chr2_3:27598578-27598597 | Msa0286470:intron | 55.0% | |
GGTTGCACCATGTGACTAGG+AGG | - | chr2_3:27598581-27598600 | Msa0286470:intron | 55.0% | |
CCTGTGACCTCCTAGTCACA+TGG | + | chr2_3:27598591-27598610 | None:intergenic | 55.0% | |
CCATGTGACTAGGAGGTCAC+AGG | - | chr2_3:27598588-27598607 | Msa0286470:intron | 55.0% | |
TGTTGTACTCAACCACGGCG+AGG | - | chr2_3:27598780-27598799 | Msa0286470:intron | 55.0% | |
CTACCATGAGGCTATCAGGC+AGG | + | chr2_3:27598891-27598910 | None:intergenic | 55.0% | |
AGACCTTGGGCTTGGGGTTG+GGG | + | chr2_3:27593372-27593391 | None:intergenic | 60.0% | |
GAGACCTTGGGCTTGGGGTT+GGG | + | chr2_3:27593373-27593392 | None:intergenic | 60.0% | |
AGAGACCTTGGGCTTGGGGT+TGG | + | chr2_3:27593374-27593393 | None:intergenic | 60.0% | |
GAGGAGAGACCTTGGGCTTG+GGG | + | chr2_3:27593378-27593397 | None:intergenic | 60.0% | |
GAGAGGAGAGACCTTGGGCT+TGG | + | chr2_3:27593380-27593399 | None:intergenic | 60.0% | |
AGAAGGTGAAGGGTGGGGGT+TGG | - | chr2_3:27594186-27594205 | Msa0286470:intron | 60.0% | |
GAAGGTGAAGGGTGGGGGTT+GGG | - | chr2_3:27594187-27594206 | Msa0286470:intron | 60.0% | |
TGAAGGGTGGGGGTTGGGTT+GGG | - | chr2_3:27594192-27594211 | Msa0286470:intron | 60.0% | |
!! | TCCTGGCTCGGCAGCTAGTT+AGG | - | chr2_3:27596922-27596941 | Msa0286470:intron | 60.0% |
ACCTAACTAGCTGCCGAGCC+AGG | + | chr2_3:27596926-27596945 | None:intergenic | 60.0% | |
!! | GCAAATGGCACCGGCAAAGC+AGG | - | chr2_3:27597702-27597721 | Msa0286470:intron | 60.0% |
ATAAAGCTCTCGCCTCGCCG+TGG | + | chr2_3:27598795-27598814 | None:intergenic | 60.0% | |
GTGCCTGCCTGATAGCCTCA+TGG | - | chr2_3:27598885-27598904 | Msa0286470:intron | 60.0% | |
ACACCTTATGCAGGTGCCCG+CGG | + | chr2_3:27600058-27600077 | None:intergenic | 60.0% | |
GTGAAGGGTGGGGGTTGGGT+TGG | - | chr2_3:27594191-27594210 | Msa0286470:intron | 65.0% | |
!! | CCTCCCTCCAAGGGCACTAG+CGG | - | chr2_3:27594418-27594437 | Msa0286470:intron | 65.0% |
!! | CTCCCTCCAAGGGCACTAGC+GGG | - | chr2_3:27594419-27594438 | Msa0286470:intron | 65.0% |
!! | TCCCTCCAAGGGCACTAGCG+GGG | - | chr2_3:27594420-27594439 | Msa0286470:intron | 65.0% |
GTACCGCGGGCACCTGCATA+AGG | - | chr2_3:27600052-27600071 | Msa0286470:intron | 65.0% | |
GCTCCCCAACCCCAAGCCCA+AGG | - | chr2_3:27593366-27593385 | Msa0286470:three_prime_UTR | 70.0% | |
CCGCTAGTGCCCTTGGAGGG+AGG | + | chr2_3:27594421-27594440 | None:intergenic | 70.0% | |
GCCCCGCTAGTGCCCTTGGA+GGG | + | chr2_3:27594424-27594443 | None:intergenic | 70.0% | |
AGCCCCGCTAGTGCCCTTGG+AGG | + | chr2_3:27594425-27594444 | None:intergenic | 70.0% | |
TCGAGCCCCGCTAGTGCCCT+TGG | + | chr2_3:27594428-27594447 | None:intergenic | 70.0% | |
GCACTAGCGGGGCTCGAACC+TGG | - | chr2_3:27594431-27594450 | Msa0286470:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 27593338 | 27600168 | 27593338 | ID=Msa0286470;Name=Msa0286470 |
chr2_3 | mRNA | 27593338 | 27600168 | 27593338 | ID=Msa0286470-mRNA-1;Parent=Msa0286470;Name=Msa0286470-mRNA-1;_AED=0.16;_eAED=0.16;_QI=113|1|1|1|0.90|0.83|12|418|216 |
chr2_3 | exon | 27593338 | 27593816 | 27593338 | ID=Msa0286470-mRNA-1:exon:9892;Parent=Msa0286470-mRNA-1 |
chr2_3 | exon | 27593914 | 27593972 | 27593914 | ID=Msa0286470-mRNA-1:exon:9891;Parent=Msa0286470-mRNA-1 |
chr2_3 | exon | 27594212 | 27594247 | 27594212 | ID=Msa0286470-mRNA-1:exon:9890;Parent=Msa0286470-mRNA-1 |
chr2_3 | exon | 27594348 | 27594428 | 27594348 | ID=Msa0286470-mRNA-1:exon:9889;Parent=Msa0286470-mRNA-1 |
chr2_3 | exon | 27595732 | 27595803 | 27595732 | ID=Msa0286470-mRNA-1:exon:9888;Parent=Msa0286470-mRNA-1 |
chr2_3 | exon | 27596342 | 27596413 | 27596342 | ID=Msa0286470-mRNA-1:exon:9887;Parent=Msa0286470-mRNA-1 |
chr2_3 | exon | 27596493 | 27596597 | 27596493 | ID=Msa0286470-mRNA-1:exon:9886;Parent=Msa0286470-mRNA-1 |
chr2_3 | exon | 27598664 | 27598714 | 27598664 | ID=Msa0286470-mRNA-1:exon:9885;Parent=Msa0286470-mRNA-1 |
chr2_3 | exon | 27598802 | 27598836 | 27598802 | ID=Msa0286470-mRNA-1:exon:9884;Parent=Msa0286470-mRNA-1 |
chr2_3 | exon | 27599720 | 27599764 | 27599720 | ID=Msa0286470-mRNA-1:exon:9883;Parent=Msa0286470-mRNA-1 |
chr2_3 | exon | 27599919 | 27600015 | 27599919 | ID=Msa0286470-mRNA-1:exon:9882;Parent=Msa0286470-mRNA-1 |
chr2_3 | exon | 27600119 | 27600168 | 27600119 | ID=Msa0286470-mRNA-1:exon:9881;Parent=Msa0286470-mRNA-1 |
chr2_3 | five_prime_UTR | 27600119 | 27600168 | 27600119 | ID=Msa0286470-mRNA-1:five_prime_utr;Parent=Msa0286470-mRNA-1 |
chr2_3 | five_prime_UTR | 27599953 | 27600015 | 27599953 | ID=Msa0286470-mRNA-1:five_prime_utr;Parent=Msa0286470-mRNA-1 |
chr2_3 | CDS | 27599919 | 27599952 | 27599919 | ID=Msa0286470-mRNA-1:cds;Parent=Msa0286470-mRNA-1 |
chr2_3 | CDS | 27599720 | 27599764 | 27599720 | ID=Msa0286470-mRNA-1:cds;Parent=Msa0286470-mRNA-1 |
chr2_3 | CDS | 27598802 | 27598836 | 27598802 | ID=Msa0286470-mRNA-1:cds;Parent=Msa0286470-mRNA-1 |
chr2_3 | CDS | 27598664 | 27598714 | 27598664 | ID=Msa0286470-mRNA-1:cds;Parent=Msa0286470-mRNA-1 |
chr2_3 | CDS | 27596493 | 27596597 | 27596493 | ID=Msa0286470-mRNA-1:cds;Parent=Msa0286470-mRNA-1 |
chr2_3 | CDS | 27596342 | 27596413 | 27596342 | ID=Msa0286470-mRNA-1:cds;Parent=Msa0286470-mRNA-1 |
chr2_3 | CDS | 27595732 | 27595803 | 27595732 | ID=Msa0286470-mRNA-1:cds;Parent=Msa0286470-mRNA-1 |
chr2_3 | CDS | 27594348 | 27594428 | 27594348 | ID=Msa0286470-mRNA-1:cds;Parent=Msa0286470-mRNA-1 |
chr2_3 | CDS | 27594212 | 27594247 | 27594212 | ID=Msa0286470-mRNA-1:cds;Parent=Msa0286470-mRNA-1 |
chr2_3 | CDS | 27593914 | 27593972 | 27593914 | ID=Msa0286470-mRNA-1:cds;Parent=Msa0286470-mRNA-1 |
chr2_3 | CDS | 27593756 | 27593816 | 27593756 | ID=Msa0286470-mRNA-1:cds;Parent=Msa0286470-mRNA-1 |
chr2_3 | three_prime_UTR | 27593338 | 27593755 | 27593338 | ID=Msa0286470-mRNA-1:three_prime_utr;Parent=Msa0286470-mRNA-1 |
Gene Sequence |
Protein sequence |