Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0325320 | XP_013463763.1 | 100.000 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 3.70e-151 | 428 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0325320 | sp|Q0WTY4|VPS2B_ARATH | 83.784 | 222 | 30 | 1 | 1 | 216 | 1 | 222 | 8.19e-129 | 365 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0205110 | Msa0325320 | 0.800392 | 1.472745e-48 | -8.615850e-47 |
Msa0286470 | Msa0325320 | 0.879278 | 1.420156e-69 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0325320 | MtrunA17_Chr2g0303251 | 100.000 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 3.41e-155 | 428 |
Msa0325320 | MtrunA17_Chr1g0183621 | 73.364 | 214 | 53 | 1 | 1 | 214 | 5 | 214 | 2.69e-114 | 325 |
Msa0325320 | MtrunA17_Chr7g0261511 | 77.103 | 214 | 45 | 1 | 1 | 214 | 1 | 210 | 1.86e-104 | 300 |
Msa0325320 | MtrunA17_Chr2g0300321 | 40.909 | 220 | 124 | 1 | 3 | 216 | 4 | 223 | 1.04e-41 | 140 |
Msa0325320 | MtrunA17_Chr8g0343561 | 43.750 | 176 | 99 | 0 | 3 | 178 | 4 | 179 | 1.35e-38 | 133 |
Msa0325320 | MtrunA17_Chr4g0028231 | 29.730 | 222 | 148 | 1 | 1 | 214 | 5 | 226 | 1.07e-17 | 78.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0325320 | AT5G44560.1 | 83.784 | 222 | 30 | 1 | 1 | 216 | 1 | 222 | 8.32e-130 | 365 |
Msa0325320 | AT5G44560.2 | 83.168 | 202 | 28 | 1 | 21 | 216 | 1 | 202 | 2.16e-115 | 327 |
Msa0325320 | AT5G44560.4 | 88.764 | 178 | 20 | 0 | 1 | 178 | 1 | 178 | 3.65e-114 | 324 |
Msa0325320 | AT1G03950.1 | 71.963 | 214 | 56 | 1 | 1 | 214 | 1 | 210 | 1.09e-110 | 316 |
Msa0325320 | AT5G44560.3 | 84.000 | 150 | 24 | 0 | 1 | 150 | 1 | 150 | 3.16e-88 | 257 |
Msa0325320 | AT2G06530.1 | 41.518 | 224 | 123 | 2 | 1 | 216 | 2 | 225 | 5.24e-44 | 147 |
Msa0325320 | AT2G06530.2 | 40.500 | 200 | 112 | 1 | 24 | 216 | 5 | 204 | 1.15e-36 | 127 |
Msa0325320 | AT5G22950.1 | 32.589 | 224 | 141 | 3 | 1 | 214 | 5 | 228 | 1.47e-16 | 75.9 |
Find 71 sgRNAs with CRISPR-Local
Find 396 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACTGTCCAAATTGTGAAAA+TGG | 0.145046 | 2_4:+32273333 | Msa0325320:three_prime_UTR |
TGACAGGTTCTTGATGAAAT+TGG | 0.228952 | 2_4:+32272440 | Msa0325320:intron |
CCTCTGCTTGGATTAGGTTT+TGG | 0.243723 | 2_4:+32266888 | Msa0325320:five_prime_UTR |
CATTGCCACCATTGCTTTAG+TGG | 0.261194 | 2_4:-32270457 | None:intergenic |
CCAGTTGTGCTGATTGCTTT+TGG | 0.285128 | 2_4:-32270947 | None:intergenic |
AATTCTGCGTTTGTTTGTTT+AGG | 0.295849 | 2_4:+32273100 | Msa0325320:three_prime_UTR |
GAGGAGAGACCTTTGGGCTT+GGG | 0.317763 | 2_4:-32266748 | None:intergenic |
TTTCAAGTTCTTCAACATCT+TGG | 0.321093 | 2_4:-32272886 | None:intergenic |
TAACATCCTCTGCTTGGATT+AGG | 0.323944 | 2_4:+32266882 | Msa0325320:five_prime_UTR |
ATCACTTTAGCCTGCTTTGC+CGG | 0.327935 | 2_4:-32270915 | None:intergenic |
CAACAATAAGATTGTATTAT+CGG | 0.338889 | 2_4:+32272988 | Msa0325320:three_prime_UTR |
AGCAATGGTGGCAATGAATA+AGG | 0.349876 | 2_4:+32270464 | Msa0325320:CDS |
TTCAAGTTCTTCAACATCTT+GGG | 0.356079 | 2_4:-32272885 | None:intergenic |
GCCACTTGAAACATTTAGTT+AGG | 0.365262 | 2_4:-32273153 | None:intergenic |
AGGGAAGTCGTGCACAGATC+AGG | 0.381377 | 2_4:+32270291 | Msa0325320:CDS |
CTTGAAGCAATCCGACCTTT+CGG | 0.382816 | 2_4:-32272733 | None:intergenic |
TGAAGAACTTGAAAAGAGAT+TGG | 0.400428 | 2_4:+32272895 | Msa0325320:CDS |
TCCTGGCTCGGCAGCTAGTT+AGG | 0.403556 | 2_4:+32270243 | Msa0325320:CDS |
CCAAAAGCAATCAGCACAAC+TGG | 0.415296 | 2_4:+32270947 | Msa0325320:CDS |
AGAGGAGAGACCTTTGGGCT+TGG | 0.420406 | 2_4:-32266749 | None:intergenic |
GAGCGTGTGCTGTGTATTGT+TGG | 0.425905 | 2_4:-32266725 | None:intergenic |
GCAAGCACTTCAATCTCTAC+AGG | 0.426499 | 2_4:+32270423 | Msa0325320:CDS |
AGAGAATTTATTTGCAGCTA+AGG | 0.435040 | 2_4:+32273294 | Msa0325320:three_prime_UTR |
CGAAAGGTCGGATTGCTTCA+AGG | 0.442942 | 2_4:+32272734 | Msa0325320:CDS |
TTCAATCTCTACAGGGATGA+AGG | 0.458265 | 2_4:+32270431 | Msa0325320:CDS |
GTACCGCGGGCACCTGCATA+AGG | 0.463608 | 2_4:+32273239 | Msa0325320:three_prime_UTR |
AGGAGAGACCTTTGGGCTTG+GGG | 0.466236 | 2_4:-32266747 | None:intergenic |
TGGAGTGGATATTGCATCCC+AGG | 0.474380 | 2_4:+32272460 | Msa0325320:CDS |
ACTGTCCAAATTGTGAAAAT+GGG | 0.474853 | 2_4:+32273334 | Msa0325320:three_prime_UTR |
ACCTAACTAGCTGCCGAGCC+AGG | 0.485867 | 2_4:-32270244 | None:intergenic |
TAGATATAAAGTATAGTTGT+GGG | 0.487913 | 2_4:+32273045 | Msa0325320:three_prime_UTR |
GCAAATGGCACCGGCAAAGC+AGG | 0.491669 | 2_4:+32270905 | Msa0325320:intron |
CCTGCAGATTAGTTATCTGT+TGG | 0.504006 | 2_4:-32270271 | None:intergenic |
CCAACAGATAACTAATCTGC+AGG | 0.509427 | 2_4:+32270271 | Msa0325320:CDS |
GGGAAGTCGTGCACAGATCA+GGG | 0.524632 | 2_4:+32270292 | Msa0325320:CDS |
AGAGATAGCATCACTTCAGA+TGG | 0.527919 | 2_4:+32267998 | Msa0325320:CDS |
ACAGGCTTCTACTAAAATCC+TGG | 0.535270 | 2_4:+32270226 | Msa0325320:intron |
GATGAACGAACCTTTGGGTG+TGG | 0.536552 | 2_4:-32266945 | None:intergenic |
CTACTGTAACATCCTCTGCT+TGG | 0.536805 | 2_4:+32266876 | Msa0325320:five_prime_UTR |
ATCTTCTCAGCAAATGGCAC+CGG | 0.537436 | 2_4:+32270896 | Msa0325320:intron |
ACTGCAGGAAAAGAAGTTAG+TGG | 0.545088 | 2_4:+32268103 | Msa0325320:intron |
AGCGTGTGCTGTGTATTGTT+GGG | 0.550408 | 2_4:-32266724 | None:intergenic |
GAAATGTCTGTTGCAACTAG+AGG | 0.569526 | 2_4:+32267111 | Msa0325320:CDS |
TGATCTCATACACCTTATGC+AGG | 0.569604 | 2_4:-32273251 | None:intergenic |
TTAGATATAAAGTATAGTTG+TGG | 0.569645 | 2_4:+32273044 | Msa0325320:three_prime_UTR |
AATATAATCAGTAACAAATG+AGG | 0.572412 | 2_4:-32273013 | None:intergenic |
AGTGGCAGAGATTAAAAGAG+AGG | 0.575160 | 2_4:+32268121 | Msa0325320:CDS |
TCAATCTCTACAGGGATGAA+GGG | 0.583879 | 2_4:+32270432 | Msa0325320:CDS |
TATCTTCTGCTCCGAAAGGT+CGG | 0.586806 | 2_4:+32272722 | Msa0325320:CDS |
TGGCAGTCAATATGCTACTT+CGG | 0.587003 | 2_4:+32273172 | Msa0325320:three_prime_UTR |
TCCTAACTAAATGTTTCAAG+TGG | 0.596759 | 2_4:+32273152 | Msa0325320:three_prime_UTR |
CTTCTACTAAAATCCTGGCT+CGG | 0.598970 | 2_4:+32270231 | Msa0325320:CDS |
GGTTCTTGATGAAATTGGAG+TGG | 0.601589 | 2_4:+32272445 | Msa0325320:intron |
ATGCTGAAAATGCTGCTCCA+AGG | 0.612137 | 2_4:+32272758 | Msa0325320:CDS |
CAAGCACTTCAATCTCTACA+GGG | 0.614124 | 2_4:+32270424 | Msa0325320:CDS |
GATAGCATCACTTCAGATGG+AGG | 0.618277 | 2_4:+32268001 | Msa0325320:CDS |
ATCAGCACAACTGGACATGA+CGG | 0.620669 | 2_4:+32270956 | Msa0325320:CDS |
AAGAAGAAAACCACACCCAA+AGG | 0.621044 | 2_4:+32266935 | Msa0325320:CDS |
GGGTGCCACTAAAGCAATGG+TGG | 0.624027 | 2_4:+32270452 | Msa0325320:CDS |
GAAGGGTGCCACTAAAGCAA+TGG | 0.625367 | 2_4:+32270449 | Msa0325320:CDS |
AGTCAATATGCTACTTCGGT+CGG | 0.627899 | 2_4:+32273176 | Msa0325320:three_prime_UTR |
ATCAGAAGAACTCACTAACC+AGG | 0.628471 | 2_4:+32272324 | Msa0325320:CDS |
ACACCTTATGCAGGTGCCCG+CGG | 0.629981 | 2_4:-32273242 | None:intergenic |
TAGTTATCTTCTGCTCCGAA+AGG | 0.634306 | 2_4:+32272718 | Msa0325320:intron |
CACACGCTCCCCAAGCCCAA+AGG | 0.634408 | 2_4:+32266739 | Msa0325320:five_prime_UTR |
TTTAGACAAAGATGAAGCTG+AGG | 0.636787 | 2_4:+32272297 | Msa0325320:CDS |
CCAAAACCTAATCCAAGCAG+AGG | 0.637197 | 2_4:-32266888 | None:intergenic |
ATAAGGTGTATGAGATCACA+TGG | 0.652977 | 2_4:+32273256 | Msa0325320:three_prime_UTR |
GGAAGTCGTGCACAGATCAG+GGG | 0.664483 | 2_4:+32270293 | Msa0325320:CDS |
GGGTGTAGCAACTCACACAC+AGG | 0.671175 | 2_4:+32270313 | Msa0325320:CDS |
CAACAGATAACTAATCTGCA+GGG | 0.676896 | 2_4:+32270272 | Msa0325320:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTTTTTTTTTTTAAA+TGG | - | chr2_4:32267686-32267705 | None:intergenic | 0.0% |
!! | TCATATATAAAAAAATCAAA+TGG | - | chr2_4:32267240-32267259 | None:intergenic | 10.0% |
!! | AAAAAAAAAAAAAACAGTTA+AGG | + | chr2_4:32267692-32267711 | Msa0325320:intron | 10.0% |
!!! | AACTTTTATGAAAATTTTTA+CGG | + | chr2_4:32271178-32271197 | Msa0325320:intron | 10.0% |
!!! | TTAATTACTTTTATGAATAT+TGG | + | chr2_4:32272667-32272686 | Msa0325320:intron | 10.0% |
!!! | TAATTACTTTTATGAATATT+GGG | + | chr2_4:32272668-32272687 | Msa0325320:intron | 10.0% |
!!! | ATTTTTTTACCTTTCTAAAT+AGG | + | chr2_4:32267292-32267311 | Msa0325320:intron | 15.0% |
!!! | TAATTTTTTCCTATTTAGAA+AGG | - | chr2_4:32267304-32267323 | None:intergenic | 15.0% |
!!! | CATTATTTTAAGGTATTATA+AGG | - | chr2_4:32267327-32267346 | None:intergenic | 15.0% |
!! | AGTTACAATCAAATAATTAA+AGG | + | chr2_4:32267545-32267564 | Msa0325320:intron | 15.0% |
!!! | TCTTTATTTAGATGTATTTT+TGG | + | chr2_4:32268197-32268216 | Msa0325320:intron | 15.0% |
!!! | CTTTATTTAGATGTATTTTT+GGG | + | chr2_4:32268198-32268217 | Msa0325320:intron | 15.0% |
!! | TAAATAAATAGATTTCTAAC+TGG | - | chr2_4:32269932-32269951 | None:intergenic | 15.0% |
!! | ATATATATAATCTAATGCTA+TGG | - | chr2_4:32272120-32272139 | None:intergenic | 15.0% |
!!! | TAGATCGAATTTAAGATTTA+GGG | - | chr2_4:32266988-32267007 | None:intergenic | 20.0% |
!!! | TTATTCTTATTTTACAAGTC+TGG | + | chr2_4:32267145-32267164 | Msa0325320:intron | 20.0% |
!! | AATCAAATAATTAAAGGTGA+AGG | + | chr2_4:32267551-32267570 | Msa0325320:intron | 20.0% |
!! | ATCAAATAATTAAAGGTGAA+GGG | + | chr2_4:32267552-32267571 | Msa0325320:intron | 20.0% |
!! | AATAAAGATTGTTATCGATA+TGG | - | chr2_4:32268185-32268204 | None:intergenic | 20.0% |
!!! | TTGGGTATTTTTTTCTTAAT+TGG | + | chr2_4:32268216-32268235 | Msa0325320:intron | 20.0% |
!!! | TGGGTATTTTTTTCTTAATT+GGG | + | chr2_4:32268217-32268236 | Msa0325320:intron | 20.0% |
!!! | TTTTTTCTTAATTGGGATTA+AGG | + | chr2_4:32268224-32268243 | Msa0325320:intron | 20.0% |
!! | ATGATAGATATTTGTATGTT+TGG | - | chr2_4:32268408-32268427 | None:intergenic | 20.0% |
!! | GATCGTTTAAATACAAAAAT+TGG | - | chr2_4:32268734-32268753 | None:intergenic | 20.0% |
!! | AAAAATTGAATTTCAAGCTA+TGG | - | chr2_4:32269098-32269117 | None:intergenic | 20.0% |
!! | TCATTATCAATATTCATGAA+TGG | - | chr2_4:32269333-32269352 | None:intergenic | 20.0% |
!! | ATTTAGAGGAGAATTATATA+GGG | - | chr2_4:32269699-32269718 | None:intergenic | 20.0% |
!!! | TAATGATTTCTTTTTGCAAA+AGG | - | chr2_4:32269889-32269908 | None:intergenic | 20.0% |
!!! | TACATTGTTGTCTTTATTTT+TGG | + | chr2_4:32269993-32270012 | Msa0325320:intron | 20.0% |
!!! | AATTTCCAAATTTCTTTTGT+AGG | + | chr2_4:32270392-32270411 | Msa0325320:intron | 20.0% |
!!! | AATGAATAAGGTATATTTTC+TGG | + | chr2_4:32270476-32270495 | Msa0325320:intron | 20.0% |
!!! | ATGAATAAGGTATATTTTCT+GGG | + | chr2_4:32270477-32270496 | Msa0325320:intron | 20.0% |
!! | TTAAGTTACTCTTAACATAT+TGG | - | chr2_4:32270657-32270676 | None:intergenic | 20.0% |
!!! | CTTTTAGTATTTTTTTGAGA+GGG | + | chr2_4:32271043-32271062 | Msa0325320:intron | 20.0% |
!!! | GAACAATTATTAGTCTTTTT+TGG | + | chr2_4:32271116-32271135 | Msa0325320:intron | 20.0% |
!! | ATAAACTAGGAGTTAAATAA+AGG | + | chr2_4:32271309-32271328 | Msa0325320:intron | 20.0% |
!! | AATAATGAAATTGAAGAGTA+TGG | + | chr2_4:32271365-32271384 | Msa0325320:intron | 20.0% |
!!! | ATAATGAAATTGAAGAGTAT+GGG | + | chr2_4:32271366-32271385 | Msa0325320:intron | 20.0% |
!! | TGTAAGAACTAAAATAAGTA+AGG | + | chr2_4:32271680-32271699 | Msa0325320:intron | 20.0% |
!! | GTAAGAACTAAAATAAGTAA+GGG | + | chr2_4:32271681-32271700 | Msa0325320:intron | 20.0% |
!!! | ACATATTTTAAACTACCAAA+AGG | + | chr2_4:32271736-32271755 | Msa0325320:intron | 20.0% |
!!! | CATATTTTAAACTACCAAAA+GGG | + | chr2_4:32271737-32271756 | Msa0325320:intron | 20.0% |
!!! | ATATTTTAAACTACCAAAAG+GGG | + | chr2_4:32271738-32271757 | Msa0325320:intron | 20.0% |
!!! | CGGATAACATTATAAAATTT+TGG | - | chr2_4:32272152-32272171 | None:intergenic | 20.0% |
!! | GACTAACATAATGAAATATT+GGG | - | chr2_4:32272497-32272516 | None:intergenic | 20.0% |
!! | TGACTAACATAATGAAATAT+TGG | - | chr2_4:32272498-32272517 | None:intergenic | 20.0% |
!! | AATAAGATTGAAATATACCT+TGG | - | chr2_4:32272778-32272797 | None:intergenic | 20.0% |
!! | GTATATTTCAATCTTATTCA+TGG | + | chr2_4:32272780-32272799 | Msa0325320:intron | 20.0% |
!! | CAACAATAAGATTGTATTAT+CGG | + | chr2_4:32272988-32273007 | Msa0325320:three_prime_UTR | 20.0% |
!! | AATATAATCAGTAACAAATG+AGG | - | chr2_4:32273016-32273035 | None:intergenic | 20.0% |
!! | TTAGATATAAAGTATAGTTG+TGG | + | chr2_4:32273044-32273063 | Msa0325320:three_prime_UTR | 20.0% |
!! | TAGATATAAAGTATAGTTGT+GGG | + | chr2_4:32273045-32273064 | Msa0325320:three_prime_UTR | 20.0% |
! | AAAAAAGTAATGTAAGAGAG+AGG | - | chr2_4:32266770-32266789 | None:intergenic | 25.0% |
!! | CTAGATCGAATTTAAGATTT+AGG | - | chr2_4:32266989-32267008 | None:intergenic | 25.0% |
! | ATGAATTGCTAGAATAGAAA+AGG | + | chr2_4:32267262-32267281 | Msa0325320:intron | 25.0% |
! | TTCATAGCTTATAATTCGTA+GGG | + | chr2_4:32267492-32267511 | Msa0325320:intron | 25.0% |
! | TCAAATAATTAAAGGTGAAG+GGG | + | chr2_4:32267553-32267572 | Msa0325320:intron | 25.0% |
!! | GTATAACTTTTCTTTCTTGT+AGG | + | chr2_4:32267966-32267985 | Msa0325320:intron | 25.0% |
! | AGATATTTGTATGTTTGGAT+TGG | - | chr2_4:32268403-32268422 | None:intergenic | 25.0% |
! | TAAAGGTCTGTTTACTAAAT+GGG | - | chr2_4:32268518-32268537 | None:intergenic | 25.0% |
! | ATAAAGGTCTGTTTACTAAA+TGG | - | chr2_4:32268519-32268538 | None:intergenic | 25.0% |
! | ACTACAGTTAAAGATTGTAT+TGG | - | chr2_4:32268678-32268697 | None:intergenic | 25.0% |
! | AAAAATTGGATTTCAAGCTA+TGG | - | chr2_4:32268720-32268739 | None:intergenic | 25.0% |
! | ATAAAGGTCTGATTACTAAA+CGG | - | chr2_4:32268899-32268918 | None:intergenic | 25.0% |
! | TCTTAAGGACACAATAAATT+GGG | - | chr2_4:32269411-32269430 | None:intergenic | 25.0% |
! | TTCTTAAGGACACAATAAAT+TGG | - | chr2_4:32269412-32269431 | None:intergenic | 25.0% |
!! | ACATGTTCTTGATTTTCTTA+AGG | - | chr2_4:32269426-32269445 | None:intergenic | 25.0% |
! | GATTTAGAGGAGAATTATAT+AGG | - | chr2_4:32269700-32269719 | None:intergenic | 25.0% |
!! | ATATTCAAAGCATTTCTTCA+TGG | - | chr2_4:32269724-32269743 | None:intergenic | 25.0% |
!! | GTTTCTTTTTACAACTAGTT+TGG | + | chr2_4:32269842-32269861 | Msa0325320:intron | 25.0% |
!! | GGATGTTTATGATTGTTATT+AGG | - | chr2_4:32269868-32269887 | None:intergenic | 25.0% |
! | CAAAAAGAAATCATTATGCT+AGG | + | chr2_4:32269893-32269912 | Msa0325320:intron | 25.0% |
! | TAAATAGATTTCTAACTGGA+CGG | - | chr2_4:32269928-32269947 | None:intergenic | 25.0% |
!!! | TGTCTTTATTTTTGGTTGAA+TGG | + | chr2_4:32270001-32270020 | Msa0325320:intron | 25.0% |
!!! | TTTATTTTTGGTTGAATGGA+GGG | + | chr2_4:32270005-32270024 | Msa0325320:intron | 25.0% |
!! | AAAATTCTTCTTTCTTTTCG+AGG | + | chr2_4:32270345-32270364 | Msa0325320:intron | 25.0% |
!! | AAATTCTTCTTTCTTTTCGA+GGG | + | chr2_4:32270346-32270365 | Msa0325320:intron | 25.0% |
! | TAATGCCTACAAAAGAAATT+TGG | - | chr2_4:32270400-32270419 | None:intergenic | 25.0% |
!! | CTTTCCATTGTTCAAAATTT+TGG | + | chr2_4:32270509-32270528 | Msa0325320:intron | 25.0% |
!! | TAGTCCAAAATTTTGAACAA+TGG | - | chr2_4:32270516-32270535 | None:intergenic | 25.0% |
! | AAGAGTAACTTAACTTTCAT+AGG | + | chr2_4:32270664-32270683 | Msa0325320:intron | 25.0% |
!!! | GCTTTTAGTATTTTTTTGAG+AGG | + | chr2_4:32271042-32271061 | Msa0325320:intron | 25.0% |
! | AGACTAATAATTGTTCATTG+TGG | - | chr2_4:32271112-32271131 | None:intergenic | 25.0% |
! | GTGCTTACTTAATAGAAATT+TGG | + | chr2_4:32271233-32271252 | Msa0325320:intron | 25.0% |
!! | TAATGAAATTGAAGAGTATG+GGG | + | chr2_4:32271367-32271386 | Msa0325320:intron | 25.0% |
! | AAAGAGAAAAAAAACACAGA+AGG | + | chr2_4:32271532-32271551 | Msa0325320:intron | 25.0% |
!!! | ACAAATACTTTTGAAGATTG+TGG | + | chr2_4:32271577-32271596 | Msa0325320:intron | 25.0% |
!!! | CAAATACTTTTGAAGATTGT+GGG | + | chr2_4:32271578-32271597 | Msa0325320:intron | 25.0% |
!! | AAGTTTCTCTTTTATTAGCT+TGG | + | chr2_4:32272022-32272041 | Msa0325320:intron | 25.0% |
! | CAGAAAATATTGATGAAACT+TGG | + | chr2_4:32272193-32272212 | Msa0325320:intron | 25.0% |
! | TTTCGGATAACATAAATTGT+TGG | - | chr2_4:32272240-32272259 | None:intergenic | 25.0% |
!! | GATTTTCATTTATTCATGAC+AGG | + | chr2_4:32272424-32272443 | Msa0325320:intron | 25.0% |
!!! | ATTCTGTTTTTCTCTTCTTA+TGG | + | chr2_4:32272695-32272714 | Msa0325320:intron | 25.0% |
GAATCAACACGGTAATAATT+TGG | - | chr2_4:32267445-32267464 | None:intergenic | 30.0% | |
CTTCATAGCTTATAATTCGT+AGG | + | chr2_4:32267491-32267510 | Msa0325320:intron | 30.0% | |
TCATAGCTTATAATTCGTAG+GGG | + | chr2_4:32267493-32267512 | Msa0325320:intron | 30.0% | |
CAAATAATTAAAGGTGAAGG+GGG | + | chr2_4:32267554-32267573 | Msa0325320:intron | 30.0% | |
AAATAATTAAAGGTGAAGGG+GGG | + | chr2_4:32267555-32267574 | Msa0325320:intron | 30.0% | |
TATGAGTTAGCAAAGCTTTA+TGG | + | chr2_4:32267735-32267754 | Msa0325320:intron | 30.0% | |
ATTAAAAGAGAGGCAAAAAC+TGG | + | chr2_4:32268131-32268150 | Msa0325320:CDS | 30.0% | |
! | TATTTGTATGTTTGGATTGG+CGG | - | chr2_4:32268400-32268419 | None:intergenic | 30.0% |
CAAGATCTTATGGACAAATT+GGG | - | chr2_4:32268432-32268451 | None:intergenic | 30.0% | |
TCAAGATCTTATGGACAAAT+TGG | - | chr2_4:32268433-32268452 | None:intergenic | 30.0% | |
AAAGCAGTTTCAAGATCTTA+TGG | - | chr2_4:32268442-32268461 | None:intergenic | 30.0% | |
CATCAAAGAAAAGGTGATAA+AGG | - | chr2_4:32268535-32268554 | None:intergenic | 30.0% | |
! | AGATTATGAGCATTGCTAAT+AGG | + | chr2_4:32268598-32268617 | Msa0325320:intron | 30.0% |
!!! | ATTGCTAATAGGCTGTTTTT+TGG | + | chr2_4:32268609-32268628 | Msa0325320:intron | 30.0% |
AGAAGTTTCGTATTTAGTTG+AGG | + | chr2_4:32268648-32268667 | Msa0325320:intron | 30.0% | |
TAAAGGTCTGATTACTAAAC+GGG | - | chr2_4:32268898-32268917 | None:intergenic | 30.0% | |
CATCAAAGAAAAGGTGATAA+AGG | - | chr2_4:32268535-32268554 | None:intergenic | 30.0% | |
ACTATAGTTGAAGGTTGTAT+TGG | - | chr2_4:32269056-32269075 | None:intergenic | 30.0% | |
ATGTCAGTAACTATAGTTGA+AGG | - | chr2_4:32269065-32269084 | None:intergenic | 30.0% | |
TAGCACATTAAGTCAAGAAT+GGG | - | chr2_4:32269280-32269299 | None:intergenic | 30.0% | |
TTAGCACATTAAGTCAAGAA+TGG | - | chr2_4:32269281-32269300 | None:intergenic | 30.0% | |
AATCAAGAACATGTTTGCTT+TGG | + | chr2_4:32269432-32269451 | Msa0325320:intron | 30.0% | |
ATCAAGAACATGTTTGCTTT+GGG | + | chr2_4:32269433-32269452 | Msa0325320:intron | 30.0% | |
AAAGCTAAAATGCTTGTAGT+TGG | - | chr2_4:32269491-32269510 | None:intergenic | 30.0% | |
! | AACAATTGACTTTGACACAA+AGG | - | chr2_4:32269521-32269540 | None:intergenic | 30.0% |
TTTGTGTCAAAGTCAATTGT+TGG | + | chr2_4:32269520-32269539 | Msa0325320:intron | 30.0% | |
ATTTCTTCATGGAGATTTAG+AGG | - | chr2_4:32269713-32269732 | None:intergenic | 30.0% | |
AATTACAAGCAAGAAAGAGT+AGG | + | chr2_4:32269783-32269802 | Msa0325320:intron | 30.0% | |
AAAAGAAACATTTACACCAG+TGG | - | chr2_4:32269831-32269850 | None:intergenic | 30.0% | |
AAAGAAATCATTATGCTAGG+CGG | + | chr2_4:32269896-32269915 | Msa0325320:intron | 30.0% | |
!!! | CTTTATTTTTGGTTGAATGG+AGG | + | chr2_4:32270004-32270023 | Msa0325320:intron | 30.0% |
ATTTAATAGTGCTTCCAGTT+GGG | - | chr2_4:32270122-32270141 | None:intergenic | 30.0% | |
AATTTAATAGTGCTTCCAGT+TGG | - | chr2_4:32270123-32270142 | None:intergenic | 30.0% | |
! | TTGCTAAATAATGAAGTGTC+TGG | + | chr2_4:32270201-32270220 | Msa0325320:intron | 30.0% |
TTGTATTGAAGTGTAAACCA+TGG | - | chr2_4:32270728-32270747 | None:intergenic | 30.0% | |
ACTTTAGATTCAATGCAAAC+AGG | - | chr2_4:32270782-32270801 | None:intergenic | 30.0% | |
! | TAATGTGTTAGATGCTTTTC+TGG | + | chr2_4:32270805-32270824 | Msa0325320:intron | 30.0% |
!!! | TTAGTATTTTTTTGAGAGGG+AGG | + | chr2_4:32271046-32271065 | Msa0325320:intron | 30.0% |
! | CCTTCAATTAGTTCTTTATC+TGG | - | chr2_4:32271282-32271301 | None:intergenic | 30.0% |
CCAGATAAAGAACTAATTGA+AGG | + | chr2_4:32271279-32271298 | Msa0325320:intron | 30.0% | |
TGAAGGAACAACAATAAACT+AGG | + | chr2_4:32271296-32271315 | Msa0325320:intron | 30.0% | |
! | TTAGTTCTTACACTTACGTT+TGG | - | chr2_4:32271672-32271691 | None:intergenic | 30.0% |
ATATAATCTAATGCTATGGC+TGG | - | chr2_4:32272116-32272135 | None:intergenic | 30.0% | |
GTCATTTATGTATATGTACC+TGG | - | chr2_4:32272345-32272364 | None:intergenic | 30.0% | |
ATGAAAATCAGATATGACAG+AGG | - | chr2_4:32272413-32272432 | None:intergenic | 30.0% | |
AAGAAGAGAAAAACAGAATC+AGG | - | chr2_4:32272694-32272713 | None:intergenic | 30.0% | |
! | TTCAAGTTCTTCAACATCTT+GGG | - | chr2_4:32272888-32272907 | None:intergenic | 30.0% |
!! | TTTCAAGTTCTTCAACATCT+TGG | - | chr2_4:32272889-32272908 | None:intergenic | 30.0% |
TGAAGAACTTGAAAAGAGAT+TGG | + | chr2_4:32272895-32272914 | Msa0325320:CDS | 30.0% | |
AATTCTGCGTTTGTTTGTTT+AGG | + | chr2_4:32273100-32273119 | Msa0325320:three_prime_UTR | 30.0% | |
TCCTAACTAAATGTTTCAAG+TGG | + | chr2_4:32273152-32273171 | Msa0325320:three_prime_UTR | 30.0% | |
AGAGAATTTATTTGCAGCTA+AGG | + | chr2_4:32273294-32273313 | Msa0325320:three_prime_UTR | 30.0% | |
CTTGAATGTAACCAATGTGT+CGG | - | chr2_4:32267409-32267428 | None:intergenic | 35.0% | |
GAACAGACATTGAATCAACA+CGG | - | chr2_4:32267456-32267475 | None:intergenic | 35.0% | |
!!! | CGTAGGGGTTTTTTAATGTT+TGG | + | chr2_4:32267508-32267527 | Msa0325320:intron | 35.0% |
TGATTTGAGCTAAGGGTTAA+TGG | + | chr2_4:32267588-32267607 | Msa0325320:intron | 35.0% | |
TCAAGTAAACTCCAATGGTT+TGG | - | chr2_4:32267851-32267870 | None:intergenic | 35.0% | |
CTTCATCAAGTAAACTCCAA+TGG | - | chr2_4:32267856-32267875 | None:intergenic | 35.0% | |
TTGGAGTTTACTTGATGAAG+TGG | + | chr2_4:32267856-32267875 | Msa0325320:intron | 35.0% | |
CTTCTGATGTTACAAGACTT+TGG | + | chr2_4:32267902-32267921 | Msa0325320:intron | 35.0% | |
ACTTATTCCTCAACTAGAGA+GGG | - | chr2_4:32268310-32268329 | None:intergenic | 35.0% | |
CAGTGGAATTGTCATAATCA+CGG | + | chr2_4:32268345-32268364 | Msa0325320:intron | 35.0% | |
ACATCAATTGGTAGGTTTGT+TGG | - | chr2_4:32268484-32268503 | None:intergenic | 35.0% | |
TAGCATAATGAGACAATGCA+AGG | - | chr2_4:32268572-32268591 | None:intergenic | 35.0% | |
ACGACACTTCATCAAAGAAA+AGG | - | chr2_4:32268924-32268943 | None:intergenic | 35.0% | |
TAGTTGAAGGTTGTATTGGA+TGG | - | chr2_4:32269052-32269071 | None:intergenic | 35.0% | |
! | CAAGTACGTATAAGAGTATG+AGG | + | chr2_4:32269177-32269196 | Msa0325320:intron | 35.0% |
!! | TAGAGGGAATTTTCTAGAAG+TGG | - | chr2_4:32269257-32269276 | None:intergenic | 35.0% |
TTAAGTCAAGAATGGGTAGA+GGG | - | chr2_4:32269273-32269292 | None:intergenic | 35.0% | |
ATTAAGTCAAGAATGGGTAG+AGG | - | chr2_4:32269274-32269293 | None:intergenic | 35.0% | |
TCCTTTATTGCTTGTACTCT+TGG | + | chr2_4:32269307-32269326 | Msa0325320:intron | 35.0% | |
! | ACACAATAAATTGGGTTGCA+AGG | - | chr2_4:32269403-32269422 | None:intergenic | 35.0% |
TCATGCATTCCAAATCAGTT+CGG | - | chr2_4:32270165-32270184 | None:intergenic | 35.0% | |
! | ATAATGAAGTGTCTGGTTAC+AGG | + | chr2_4:32270208-32270227 | Msa0325320:intron | 35.0% |
CAACAGATAACTAATCTGCA+GGG | + | chr2_4:32270272-32270291 | Msa0325320:CDS | 35.0% | |
ACAATCAGTTTATGACCCAA+AGG | + | chr2_4:32270571-32270590 | Msa0325320:intron | 35.0% | |
CAATCAGTTTATGACCCAAA+GGG | + | chr2_4:32270572-32270591 | Msa0325320:intron | 35.0% | |
TTTGTTTGCTTCTTTGGCAA+AGG | - | chr2_4:32270625-32270644 | None:intergenic | 35.0% | |
!! | TGTTGCTTTGTTTGCTTCTT+TGG | - | chr2_4:32270631-32270650 | None:intergenic | 35.0% |
ATTGAAGTGTAAACCATGGA+TGG | - | chr2_4:32270724-32270743 | None:intergenic | 35.0% | |
! | ATTTGCTGAGAAGATAAGCA+AGG | - | chr2_4:32270891-32270910 | None:intergenic | 35.0% |
TTGCTTATCTTCTCAGCAAA+TGG | + | chr2_4:32270890-32270909 | Msa0325320:intron | 35.0% | |
ATTAAGTAAGCACCACCTTT+GGG | - | chr2_4:32271226-32271245 | None:intergenic | 35.0% | |
TATTAAGTAAGCACCACCTT+TGG | - | chr2_4:32271227-32271246 | None:intergenic | 35.0% | |
TTGTGAAACTGTCATCAAGA+TGG | + | chr2_4:32271401-32271420 | Msa0325320:intron | 35.0% | |
ACTATACTGAAGACGATAGT+GGG | + | chr2_4:32271466-32271485 | Msa0325320:intron | 35.0% | |
TTCTAGCAAAAGCAAGGTAA+TGG | + | chr2_4:32271830-32271849 | Msa0325320:intron | 35.0% | |
TTCTAGCAAAAGCAAGGTAA+TGG | + | chr2_4:32271830-32271849 | Msa0325320:intron | 35.0% | |
CATCATCTCAATCTGCATTT+CGG | - | chr2_4:32272257-32272276 | None:intergenic | 35.0% | |
TTTAGACAAAGATGAAGCTG+AGG | + | chr2_4:32272297-32272316 | Msa0325320:CDS | 35.0% | |
TGACAGGTTCTTGATGAAAT+TGG | + | chr2_4:32272440-32272459 | Msa0325320:intron | 35.0% | |
! | AAATCACGTGTTTTCACACA+AGG | + | chr2_4:32272532-32272551 | Msa0325320:intron | 35.0% |
CGAATTGTTAGTTCATAGCA+TGG | + | chr2_4:32272565-32272584 | Msa0325320:intron | 35.0% | |
GCCACTTGAAACATTTAGTT+AGG | - | chr2_4:32273156-32273175 | None:intergenic | 35.0% | |
! | GTTGAATTTTATCTGTACCG+CGG | + | chr2_4:32273225-32273244 | Msa0325320:three_prime_UTR | 35.0% |
! | TTGAATTTTATCTGTACCGC+GGG | + | chr2_4:32273226-32273245 | Msa0325320:three_prime_UTR | 35.0% |
ATAAGGTGTATGAGATCACA+TGG | + | chr2_4:32273256-32273275 | Msa0325320:three_prime_UTR | 35.0% | |
TAACATCCTCTGCTTGGATT+AGG | + | chr2_4:32266882-32266901 | Msa0325320:five_prime_UTR | 40.0% | |
AAGAAGAAAACCACACCCAA+AGG | + | chr2_4:32266935-32266954 | Msa0325320:CDS | 40.0% | |
AGAGAGATGAACGAACCTTT+GGG | - | chr2_4:32266953-32266972 | None:intergenic | 40.0% | |
AAGAGAGATGAACGAACCTT+TGG | - | chr2_4:32266954-32266973 | None:intergenic | 40.0% | |
GAAATGTCTGTTGCAACTAG+AGG | + | chr2_4:32267111-32267130 | Msa0325320:CDS | 40.0% | |
! | AGCTCATCTGATTTGAGCTA+AGG | + | chr2_4:32267580-32267599 | Msa0325320:intron | 40.0% |
! | GCTCATCTGATTTGAGCTAA+GGG | + | chr2_4:32267581-32267600 | Msa0325320:intron | 40.0% |
TTAATGGAGTTGGAGATCCT+TGG | + | chr2_4:32267604-32267623 | Msa0325320:intron | 40.0% | |
! | AGCTTTATGGCACTCACAAA+TGG | + | chr2_4:32267748-32267767 | Msa0325320:intron | 40.0% |
TTTACATTTACCTCCCTCCA+AGG | + | chr2_4:32267772-32267791 | Msa0325320:intron | 40.0% | |
TTACATTTACCTCCCTCCAA+GGG | + | chr2_4:32267773-32267792 | Msa0325320:intron | 40.0% | |
!! | TGGACAAGTATTGGATACAG+AGG | - | chr2_4:32267823-32267842 | None:intergenic | 40.0% |
! | TTGGTCTAGTGGACAAGTAT+TGG | - | chr2_4:32267832-32267851 | None:intergenic | 40.0% |
GACTTTGGTAGAAGTTAGCA+AGG | + | chr2_4:32267917-32267936 | Msa0325320:intron | 40.0% | |
AGAGATAGCATCACTTCAGA+TGG | + | chr2_4:32267998-32268017 | Msa0325320:CDS | 40.0% | |
CAAGGCAGTTAAGCACTAAA+AGG | - | chr2_4:32268080-32268099 | None:intergenic | 40.0% | |
! | TTCTTTTCCTGCAGTAGACA+AGG | - | chr2_4:32268098-32268117 | None:intergenic | 40.0% |
ACTGCAGGAAAAGAAGTTAG+TGG | + | chr2_4:32268103-32268122 | Msa0325320:intron | 40.0% | |
AGTGGCAGAGATTAAAAGAG+AGG | + | chr2_4:32268121-32268140 | Msa0325320:CDS | 40.0% | |
AGAGGCAAAAACTGGAAATG+AGG | + | chr2_4:32268139-32268158 | Msa0325320:CDS | 40.0% | |
TTATTCCTCAACTAGAGAGG+GGG | - | chr2_4:32268308-32268327 | None:intergenic | 40.0% | |
CTTATTCCTCAACTAGAGAG+GGG | - | chr2_4:32268309-32268328 | None:intergenic | 40.0% | |
CACTTATTCCTCAACTAGAG+AGG | - | chr2_4:32268311-32268330 | None:intergenic | 40.0% | |
! | GTGTATGTTTGATTCGTCAG+TGG | + | chr2_4:32268328-32268347 | Msa0325320:intron | 40.0% |
GTATGACAAAATCACGGTGT+GGG | - | chr2_4:32268374-32268393 | None:intergenic | 40.0% | |
!! | TTGGTAGGTTTGTTGGTTAG+AGG | - | chr2_4:32268477-32268496 | None:intergenic | 40.0% |
AACCTACCAATTGATGTCCA+AGG | + | chr2_4:32268487-32268506 | Msa0325320:intron | 40.0% | |
ACCTACCAATTGATGTCCAA+GGG | + | chr2_4:32268488-32268507 | Msa0325320:intron | 40.0% | |
TTACTAAATGGGTGTTCCCT+TGG | - | chr2_4:32268507-32268526 | None:intergenic | 40.0% | |
ACGACGCTTCATCAAAGAAA+AGG | - | chr2_4:32268544-32268563 | None:intergenic | 40.0% | |
TCAGTTTCTGACTACTTCAG+AGG | + | chr2_4:32268762-32268781 | Msa0325320:intron | 40.0% | |
ATGCAGTATCAGTCATCGAT+TGG | - | chr2_4:32268834-32268853 | None:intergenic | 40.0% | |
!! | GGGAATTTTCTAGAAGTGGT+GGG | - | chr2_4:32268871-32268890 | None:intergenic | 40.0% |
!! | TAGGGGGAATTTTCTAGAAG+TGG | - | chr2_4:32268875-32268894 | None:intergenic | 40.0% |
TCTGATTACTAAACGGGTAG+GGG | - | chr2_4:32268892-32268911 | None:intergenic | 40.0% | |
GTCTGATTACTAAACGGGTA+GGG | - | chr2_4:32268893-32268912 | None:intergenic | 40.0% | |
! | AGATTATGAGCATTGCCAGT+AGG | + | chr2_4:32268977-32268996 | Msa0325320:intron | 40.0% |
AGAAGCTCCGTATTTAGTTG+AGG | + | chr2_4:32269026-32269045 | Msa0325320:intron | 40.0% | |
TGGATGGCCTCAACTAAATA+CGG | - | chr2_4:32269036-32269055 | None:intergenic | 40.0% | |
GAATTTCAAGCTATGGCTCA+AGG | - | chr2_4:32269091-32269110 | None:intergenic | 40.0% | |
GTTCAGTTTCTTACTACTCC+AGG | + | chr2_4:32269138-32269157 | Msa0325320:intron | 40.0% | |
ATGCAGTATTAGTCACCGAT+TGG | - | chr2_4:32269210-32269229 | None:intergenic | 40.0% | |
!! | GGGAATTTTCTAGAAGTGGT+GGG | - | chr2_4:32268871-32268890 | None:intergenic | 40.0% |
!! | AGGGAATTTTCTAGAAGTGG+TGG | - | chr2_4:32269254-32269273 | None:intergenic | 40.0% |
! | GCCAAGAGTACAAGCAATAA+AGG | - | chr2_4:32269311-32269330 | None:intergenic | 40.0% |
!! | GTTTGCTTTGGGAAATGAAG+AGG | + | chr2_4:32269444-32269463 | Msa0325320:intron | 40.0% |
TATGTTGAGACGTCTGTTGA+AGG | - | chr2_4:32269551-32269570 | None:intergenic | 40.0% | |
GAATAAGAGGTCCTTAGTTG+AGG | - | chr2_4:32269667-32269686 | None:intergenic | 40.0% | |
AGGGATTCTGCTTGAATAAG+AGG | - | chr2_4:32269680-32269699 | None:intergenic | 40.0% | |
AAACATTTACACCAGTGGCA+AGG | - | chr2_4:32269826-32269845 | None:intergenic | 40.0% | |
TGTGTGTATCCGAACTGATT+TGG | + | chr2_4:32270153-32270172 | Msa0325320:intron | 40.0% | |
ACAGGCTTCTACTAAAATCC+TGG | + | chr2_4:32270226-32270245 | Msa0325320:intron | 40.0% | |
CTTCTACTAAAATCCTGGCT+CGG | + | chr2_4:32270231-32270250 | Msa0325320:CDS | 40.0% | |
! | CCTGCAGATTAGTTATCTGT+TGG | - | chr2_4:32270274-32270293 | None:intergenic | 40.0% |
CCAACAGATAACTAATCTGC+AGG | + | chr2_4:32270271-32270290 | Msa0325320:CDS | 40.0% | |
CAAGCACTTCAATCTCTACA+GGG | + | chr2_4:32270424-32270443 | Msa0325320:CDS | 40.0% | |
TTCAATCTCTACAGGGATGA+AGG | + | chr2_4:32270431-32270450 | Msa0325320:CDS | 40.0% | |
TCAATCTCTACAGGGATGAA+GGG | + | chr2_4:32270432-32270451 | Msa0325320:CDS | 40.0% | |
AGCAATGGTGGCAATGAATA+AGG | + | chr2_4:32270464-32270483 | Msa0325320:CDS | 40.0% | |
GGAAATGTTTGACAGAAGAC+TGG | + | chr2_4:32270685-32270704 | Msa0325320:intron | 40.0% | |
TCATTGTGGTGTGCAATCTT+TGG | - | chr2_4:32271098-32271117 | None:intergenic | 40.0% | |
TTTCGCCAGTATTAGACTGT+TGG | + | chr2_4:32271154-32271173 | Msa0325320:intron | 40.0% | |
TTCGCCAGTATTAGACTGTT+GGG | + | chr2_4:32271155-32271174 | Msa0325320:intron | 40.0% | |
AGTTCCCAACAGTCTAATAC+TGG | - | chr2_4:32271162-32271181 | None:intergenic | 40.0% | |
CACTATCGTCTTCAGTATAG+TGG | - | chr2_4:32271467-32271486 | None:intergenic | 40.0% | |
CACTATACTGAAGACGATAG+TGG | + | chr2_4:32271465-32271484 | Msa0325320:intron | 40.0% | |
AAACACAGAAGGAGAACTTG+AGG | + | chr2_4:32271543-32271562 | Msa0325320:intron | 40.0% | |
TCAGAATATTGCTGTGACGT+GGG | + | chr2_4:32271704-32271723 | Msa0325320:intron | 40.0% | |
GGAAACTTGTCACAGCAATT+GGG | + | chr2_4:32271759-32271778 | Msa0325320:intron | 40.0% | |
GAAACTTGTCACAGCAATTG+GGG | + | chr2_4:32271760-32271779 | Msa0325320:intron | 40.0% | |
ACTCAACCAGCTTCAATTTG+TGG | + | chr2_4:32271893-32271912 | Msa0325320:intron | 40.0% | |
TACTCTGTTGTACTCAACCA+TGG | + | chr2_4:32271882-32271901 | Msa0325320:intron | 40.0% | |
! | CTGCTTTAAGTACTACCATG+AGG | - | chr2_4:32272090-32272109 | None:intergenic | 40.0% |
CTCATGGTAGTACTTAAAGC+AGG | + | chr2_4:32272088-32272107 | Msa0325320:intron | 40.0% | |
CATCATCTCAAACTGCATCT+CGG | - | chr2_4:32272172-32272191 | None:intergenic | 40.0% | |
ATCAGAAGAACTCACTAACC+AGG | + | chr2_4:32272324-32272343 | Msa0325320:CDS | 40.0% | |
GGTTCTTGATGAAATTGGAG+TGG | + | chr2_4:32272445-32272464 | Msa0325320:intron | 40.0% | |
ATTGGGCTCAAAACAAACCT+GGG | - | chr2_4:32272480-32272499 | None:intergenic | 40.0% | |
TATTGGGCTCAAAACAAACC+TGG | - | chr2_4:32272481-32272500 | None:intergenic | 40.0% | |
CCAACTACTCGAAAACTCTT+AGG | - | chr2_4:32272613-32272632 | None:intergenic | 40.0% | |
!!! | CCTAAGAGTTTTCGAGTAGT+TGG | + | chr2_4:32272610-32272629 | Msa0325320:intron | 40.0% |
TAGTTATCTTCTGCTCCGAA+AGG | + | chr2_4:32272718-32272737 | Msa0325320:intron | 40.0% | |
! | TGGCAGTCAATATGCTACTT+CGG | + | chr2_4:32273172-32273191 | Msa0325320:three_prime_UTR | 40.0% |
! | AGTCAATATGCTACTTCGGT+CGG | + | chr2_4:32273176-32273195 | Msa0325320:three_prime_UTR | 40.0% |
TGATCTCATACACCTTATGC+AGG | - | chr2_4:32273254-32273273 | None:intergenic | 40.0% | |
AGCGTGTGCTGTGTATTGTT+GGG | - | chr2_4:32266727-32266746 | None:intergenic | 45.0% | |
AAGAGAGAGGAGAGACCTTT+GGG | - | chr2_4:32266757-32266776 | None:intergenic | 45.0% | |
TAAGAGAGAGGAGAGACCTT+TGG | - | chr2_4:32266758-32266777 | None:intergenic | 45.0% | |
CTACTGTAACATCCTCTGCT+TGG | + | chr2_4:32266876-32266895 | Msa0325320:five_prime_UTR | 45.0% | |
CCAAAACCTAATCCAAGCAG+AGG | - | chr2_4:32266891-32266910 | None:intergenic | 45.0% | |
!! | CCTCTGCTTGGATTAGGTTT+TGG | + | chr2_4:32266888-32266907 | Msa0325320:five_prime_UTR | 45.0% |
CATCGACACTTCACACATTG+AGG | + | chr2_4:32267378-32267397 | Msa0325320:intron | 45.0% | |
GAGCTAAGGGTTAATGGAGT+TGG | + | chr2_4:32267594-32267613 | Msa0325320:intron | 45.0% | |
GTATTGGATACAGAGGTTCC+AGG | - | chr2_4:32267816-32267835 | None:intergenic | 45.0% | |
TGTCCACTAGACCAAACCAT+TGG | + | chr2_4:32267837-32267856 | Msa0325320:intron | 45.0% | |
!! | ACTCCAATGGTTTGGTCTAG+TGG | - | chr2_4:32267843-32267862 | None:intergenic | 45.0% |
GATAGCATCACTTCAGATGG+AGG | + | chr2_4:32268001-32268020 | Msa0325320:CDS | 45.0% | |
TTAACTGCCTTGTCTACTGC+AGG | + | chr2_4:32268088-32268107 | Msa0325320:intron | 45.0% | |
CGTATGACAAAATCACGGTG+TGG | - | chr2_4:32268375-32268394 | None:intergenic | 45.0% | |
CGGTGCGTATGACAAAATCA+CGG | - | chr2_4:32268380-32268399 | None:intergenic | 45.0% | |
TCCCTTGGACATCAATTGGT+AGG | - | chr2_4:32268492-32268511 | None:intergenic | 45.0% | |
GTGTTCCCTTGGACATCAAT+TGG | - | chr2_4:32268496-32268515 | None:intergenic | 45.0% | |
! | CAAGCGCGTATAAGAGTATG+AGG | + | chr2_4:32268801-32268820 | Msa0325320:intron | 45.0% |
! | CAGTATCAGTCATCGATTGG+AGG | - | chr2_4:32268831-32268850 | None:intergenic | 45.0% |
!! | GGGGAATTTTCTAGAAGTGG+TGG | - | chr2_4:32268872-32268891 | None:intergenic | 45.0% |
CTGATTACTAAACGGGTAGG+GGG | - | chr2_4:32268891-32268910 | None:intergenic | 45.0% | |
GGTCTGATTACTAAACGGGT+AGG | - | chr2_4:32268894-32268913 | None:intergenic | 45.0% | |
! | TTATGAGCATTGCCAGTAGG+TGG | + | chr2_4:32268980-32268999 | Msa0325320:intron | 45.0% |
! | CATTGCCAGTAGGTGGTTTT+TGG | + | chr2_4:32268987-32269006 | Msa0325320:intron | 45.0% |
TGTCTAGAGACTTTGTTGCC+TGG | - | chr2_4:32269159-32269178 | None:intergenic | 45.0% | |
GTATGAGGTTGACCTCCAAT+CGG | + | chr2_4:32268816-32268835 | Msa0325320:intron | 45.0% | |
! | CAGTATTAGTCACCGATTGG+AGG | - | chr2_4:32269207-32269226 | None:intergenic | 45.0% |
GGAGTTGCTTATTCGCAACA+AGG | - | chr2_4:32269470-32269489 | None:intergenic | 45.0% | |
AGTCGTACAGTCTTCGTTTG+TGG | + | chr2_4:32269575-32269594 | Msa0325320:intron | 45.0% | |
AACCATCTCTCGTGCTTGAT+TGG | - | chr2_4:32269607-32269626 | None:intergenic | 45.0% | |
TGCACACCATTCCTCAACTA+AGG | + | chr2_4:32269653-32269672 | Msa0325320:intron | 45.0% | |
AGAGGTCCTTAGTTGAGGAA+TGG | - | chr2_4:32269662-32269681 | None:intergenic | 45.0% | |
AATCATTATGCTAGGCGGAG+AGG | + | chr2_4:32269901-32269920 | Msa0325320:intron | 45.0% | |
ATCATTATGCTAGGCGGAGA+GGG | + | chr2_4:32269902-32269921 | Msa0325320:intron | 45.0% | |
TACTGTAGTATCTGCCCAAC+TGG | + | chr2_4:32270105-32270124 | Msa0325320:intron | 45.0% | |
GCAAGCACTTCAATCTCTAC+AGG | + | chr2_4:32270423-32270442 | Msa0325320:CDS | 45.0% | |
CATTGCCACCATTGCTTTAG+TGG | - | chr2_4:32270460-32270479 | None:intergenic | 45.0% | |
GTTTATGACCCAAAGGGTAG+AGG | + | chr2_4:32270578-32270597 | Msa0325320:intron | 45.0% | |
CAAGACAACCTCTACCCTTT+GGG | - | chr2_4:32270589-32270608 | None:intergenic | 45.0% | |
TCAAGACAACCTCTACCCTT+TGG | - | chr2_4:32270590-32270609 | None:intergenic | 45.0% | |
ATCTTCTCAGCAAATGGCAC+CGG | + | chr2_4:32270896-32270915 | Msa0325320:intron | 45.0% | |
ATCACTTTAGCCTGCTTTGC+CGG | - | chr2_4:32270918-32270937 | None:intergenic | 45.0% | |
!!! | CCAGTTGTGCTGATTGCTTT+TGG | - | chr2_4:32270950-32270969 | None:intergenic | 45.0% |
CCAAAAGCAATCAGCACAAC+TGG | + | chr2_4:32270947-32270966 | Msa0325320:CDS | 45.0% | |
ATCAGCACAACTGGACATGA+CGG | + | chr2_4:32270956-32270975 | Msa0325320:CDS | 45.0% | |
ATACTGGCGAAACACTGGAT+TGG | - | chr2_4:32271146-32271165 | None:intergenic | 45.0% | |
GTCTAATACTGGCGAAACAC+TGG | - | chr2_4:32271151-32271170 | None:intergenic | 45.0% | |
GCATTGTATGATCCACCCAA+AGG | + | chr2_4:32271208-32271227 | Msa0325320:intron | 45.0% | |
TTGTATGATCCACCCAAAGG+TGG | + | chr2_4:32271211-32271230 | Msa0325320:intron | 45.0% | |
ATCGTCTTCAGTATAGTGGC+AGG | - | chr2_4:32271463-32271482 | None:intergenic | 45.0% | |
ACAGAAGGAGAACTTGAGGT+TGG | + | chr2_4:32271547-32271566 | Msa0325320:intron | 45.0% | |
GAAGATTGTGGGCAATAGAG+AGG | + | chr2_4:32271589-32271608 | Msa0325320:intron | 45.0% | |
GTCAGAATATTGCTGTGACG+TGG | + | chr2_4:32271703-32271722 | Msa0325320:intron | 45.0% | |
! | CTGTGACAAGTTTCCCCTTT+TGG | - | chr2_4:32271754-32271773 | None:intergenic | 45.0% |
GGGAAACTTGTCACAGCAAT+TGG | + | chr2_4:32271758-32271777 | Msa0325320:intron | 45.0% | |
GAGGTCACAGGTTCAATTTG+TGG | + | chr2_4:32271800-32271819 | Msa0325320:intron | 45.0% | |
ACCAGCTTCTAGCAAAAGCA+AGG | + | chr2_4:32271824-32271843 | Msa0325320:intron | 45.0% | |
!! | ACCTTGCTTTTGCTAGAAGC+TGG | - | chr2_4:32271828-32271847 | None:intergenic | 45.0% |
GGTTGAGTACAACAGAGTAC+TGG | - | chr2_4:32271881-32271900 | None:intergenic | 45.0% | |
CTGGTTCCACAAATTGAAGC+TGG | - | chr2_4:32271902-32271921 | None:intergenic | 45.0% | |
ACCAGCTTCTAGCAAAAGCA+AGG | + | chr2_4:32271824-32271843 | Msa0325320:intron | 45.0% | |
!! | ACCTTGCTTTTGCTAGAAGC+TGG | - | chr2_4:32271828-32271847 | None:intergenic | 45.0% |
GGTTGAGTACAACAGAGTAC+TGG | - | chr2_4:32271881-32271900 | None:intergenic | 45.0% | |
AGTACTACCATGAGGCTATC+AGG | - | chr2_4:32272082-32272101 | None:intergenic | 45.0% | |
TATCTTCTGCTCCGAAAGGT+CGG | + | chr2_4:32272722-32272741 | Msa0325320:CDS | 45.0% | |
CTTGAAGCAATCCGACCTTT+CGG | - | chr2_4:32272736-32272755 | None:intergenic | 45.0% | |
ATGCTGAAAATGCTGCTCCA+AGG | + | chr2_4:32272758-32272777 | Msa0325320:CDS | 45.0% | |
TCTGCATGCACAAAGCAACA+TGG | - | chr2_4:32272858-32272877 | None:intergenic | 45.0% | |
!! | TTTGTAATTAAAAAAAAAAA+AGG | - | chr2_4:32266796-32266815 | None:intergenic | 5.0% |
!!! | ATATTATATTCATTATTTTA+AGG | - | chr2_4:32267337-32267356 | None:intergenic | 5.0% |
GAGCGTGTGCTGTGTATTGT+TGG | - | chr2_4:32266728-32266747 | None:intergenic | 50.0% | |
GATGAACGAACCTTTGGGTG+TGG | - | chr2_4:32266948-32266967 | None:intergenic | 50.0% | |
TTGAGGTGTGTCCGACACAT+TGG | + | chr2_4:32267395-32267414 | Msa0325320:intron | 50.0% | |
GGAGATCCTTGGTTCAAACG+CGG | + | chr2_4:32267615-32267634 | Msa0325320:intron | 50.0% | |
GAGATCCTTGGTTCAAACGC+GGG | + | chr2_4:32267616-32267635 | Msa0325320:intron | 50.0% | |
TTTGTCCCGCGTTTGAACCA+AGG | - | chr2_4:32267624-32267643 | None:intergenic | 50.0% | |
GGATTTCAAGCTATGGCTCG+AGG | - | chr2_4:32268713-32268732 | None:intergenic | 50.0% | |
GCACACCAAAAACCACCTAC+TGG | - | chr2_4:32268995-32269014 | None:intergenic | 50.0% | |
CACCAATCAAGCACGAGAGA+TGG | + | chr2_4:32269602-32269621 | Msa0325320:intron | 50.0% | |
ACCAGTGGCAAGGATGAACA+CGG | - | chr2_4:32269816-32269835 | None:intergenic | 50.0% | |
!! | GAAGGGTGCCACTAAAGCAA+TGG | + | chr2_4:32270449-32270468 | Msa0325320:CDS | 50.0% |
AAGTAAGCACCACCTTTGGG+TGG | - | chr2_4:32271223-32271242 | None:intergenic | 50.0% | |
!! | ACTGAAGACGATAGTGGGTG+TGG | + | chr2_4:32271471-32271490 | Msa0325320:intron | 50.0% |
! | AGTGGGTGTGGTTTTTGCAC+TGG | + | chr2_4:32271483-32271502 | Msa0325320:intron | 50.0% |
TGTTGTACTCAACCATGGCG+AGG | + | chr2_4:32271980-32271999 | Msa0325320:intron | 50.0% | |
TGGAGTGGATATTGCATCCC+AGG | + | chr2_4:32272460-32272479 | Msa0325320:CDS | 50.0% | |
CGAAAGGTCGGATTGCTTCA+AGG | + | chr2_4:32272734-32272753 | Msa0325320:CDS | 50.0% | |
GCATGCACAAAGCAACATGG+AGG | - | chr2_4:32272855-32272874 | None:intergenic | 50.0% | |
AGGAGAGACCTTTGGGCTTG+GGG | - | chr2_4:32266750-32266769 | None:intergenic | 55.0% | |
GAGGAGAGACCTTTGGGCTT+GGG | - | chr2_4:32266751-32266770 | None:intergenic | 55.0% | |
AGAGGAGAGACCTTTGGGCT+TGG | - | chr2_4:32266752-32266771 | None:intergenic | 55.0% | |
TCCTCAACTAGAGAGGGGGT+GGG | - | chr2_4:32268304-32268323 | None:intergenic | 55.0% | |
TTCCTCAACTAGAGAGGGGG+TGG | - | chr2_4:32268305-32268324 | None:intergenic | 55.0% | |
ACCGTGTTCATCCTTGCCAC+TGG | + | chr2_4:32269812-32269831 | Msa0325320:intron | 55.0% | |
AGGGAAGTCGTGCACAGATC+AGG | + | chr2_4:32270291-32270310 | Msa0325320:CDS | 55.0% | |
GGGAAGTCGTGCACAGATCA+GGG | + | chr2_4:32270292-32270311 | Msa0325320:CDS | 55.0% | |
GGAAGTCGTGCACAGATCAG+GGG | + | chr2_4:32270293-32270312 | Msa0325320:CDS | 55.0% | |
GGGTGTAGCAACTCACACAC+AGG | + | chr2_4:32270313-32270332 | Msa0325320:CDS | 55.0% | |
!! | GGGTGCCACTAAAGCAATGG+TGG | + | chr2_4:32270452-32270471 | Msa0325320:CDS | 55.0% |
TGGGGTTGCACCATGTGACT+AGG | + | chr2_4:32271778-32271797 | Msa0325320:intron | 55.0% | |
GGTTGCACCATGTGACTAGG+AGG | + | chr2_4:32271781-32271800 | Msa0325320:intron | 55.0% | |
CCTGTGACCTCCTAGTCACA+TGG | - | chr2_4:32271791-32271810 | None:intergenic | 55.0% | |
CCATGTGACTAGGAGGTCAC+AGG | + | chr2_4:32271788-32271807 | Msa0325320:intron | 55.0% | |
ATAAAGCTCTCGCCTCGCCA+TGG | - | chr2_4:32271995-32272014 | None:intergenic | 55.0% | |
CTACCATGAGGCTATCAGGC+AGG | - | chr2_4:32272078-32272097 | None:intergenic | 55.0% | |
ACCCACCCCCTCTCTAGTTG+AGG | + | chr2_4:32268300-32268319 | Msa0325320:intron | 60.0% | |
!! | TCCTGGCTCGGCAGCTAGTT+AGG | + | chr2_4:32270243-32270262 | Msa0325320:CDS | 60.0% |
ACCTAACTAGCTGCCGAGCC+AGG | - | chr2_4:32270247-32270266 | None:intergenic | 60.0% | |
!! | GCAAATGGCACCGGCAAAGC+AGG | + | chr2_4:32270905-32270924 | Msa0325320:intron | 60.0% |
GTGCCTGCCTGATAGCCTCA+TGG | + | chr2_4:32272072-32272091 | Msa0325320:intron | 60.0% | |
ACACCTTATGCAGGTGCCCG+CGG | - | chr2_4:32273245-32273264 | None:intergenic | 60.0% | |
CACACGCTCCCCAAGCCCAA+AGG | + | chr2_4:32266739-32266758 | Msa0325320:five_prime_UTR | 65.0% | |
!! | CCTCCCTCCAAGGGCACTAG+CGG | + | chr2_4:32267782-32267801 | Msa0325320:intron | 65.0% |
!! | CTCCCTCCAAGGGCACTAGC+GGG | + | chr2_4:32267783-32267802 | Msa0325320:intron | 65.0% |
!! | TCCCTCCAAGGGCACTAGCG+GGG | + | chr2_4:32267784-32267803 | Msa0325320:intron | 65.0% |
GTACCGCGGGCACCTGCATA+AGG | + | chr2_4:32273239-32273258 | Msa0325320:three_prime_UTR | 65.0% | |
CCGCTAGTGCCCTTGGAGGG+AGG | - | chr2_4:32267785-32267804 | None:intergenic | 70.0% | |
GCCCCGCTAGTGCCCTTGGA+GGG | - | chr2_4:32267788-32267807 | None:intergenic | 70.0% | |
AGCCCCGCTAGTGCCCTTGG+AGG | - | chr2_4:32267789-32267808 | None:intergenic | 70.0% | |
TCGAGCCCCGCTAGTGCCCT+TGG | - | chr2_4:32267792-32267811 | None:intergenic | 70.0% | |
GCACTAGCGGGGCTCGAACC+TGG | + | chr2_4:32267795-32267814 | Msa0325320:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_4 | gene | 32266714 | 32273355 | 32266714 | ID=Msa0325320;Name=Msa0325320 |
chr2_4 | mRNA | 32266714 | 32273355 | 32266714 | ID=Msa0325320-mRNA-1;Parent=Msa0325320;Name=Msa0325320-mRNA-1;_AED=0.15;_eAED=0.15;_QI=113|1|1|1|0.90|0.83|12|418|216 |
chr2_4 | exon | 32266714 | 32266760 | 32266714 | ID=Msa0325320-mRNA-1:exon:10557;Parent=Msa0325320-mRNA-1 |
chr2_4 | exon | 32266857 | 32266956 | 32266857 | ID=Msa0325320-mRNA-1:exon:10558;Parent=Msa0325320-mRNA-1 |
chr2_4 | exon | 32267088 | 32267132 | 32267088 | ID=Msa0325320-mRNA-1:exon:10559;Parent=Msa0325320-mRNA-1 |
chr2_4 | exon | 32267988 | 32268022 | 32267988 | ID=Msa0325320-mRNA-1:exon:10560;Parent=Msa0325320-mRNA-1 |
chr2_4 | exon | 32268110 | 32268160 | 32268110 | ID=Msa0325320-mRNA-1:exon:10561;Parent=Msa0325320-mRNA-1 |
chr2_4 | exon | 32270230 | 32270334 | 32270230 | ID=Msa0325320-mRNA-1:exon:10562;Parent=Msa0325320-mRNA-1 |
chr2_4 | exon | 32270414 | 32270485 | 32270414 | ID=Msa0325320-mRNA-1:exon:10563;Parent=Msa0325320-mRNA-1 |
chr2_4 | exon | 32270906 | 32270977 | 32270906 | ID=Msa0325320-mRNA-1:exon:10564;Parent=Msa0325320-mRNA-1 |
chr2_4 | exon | 32272265 | 32272345 | 32272265 | ID=Msa0325320-mRNA-1:exon:10565;Parent=Msa0325320-mRNA-1 |
chr2_4 | exon | 32272446 | 32272481 | 32272446 | ID=Msa0325320-mRNA-1:exon:10566;Parent=Msa0325320-mRNA-1 |
chr2_4 | exon | 32272721 | 32272779 | 32272721 | ID=Msa0325320-mRNA-1:exon:10567;Parent=Msa0325320-mRNA-1 |
chr2_4 | exon | 32272877 | 32273355 | 32272877 | ID=Msa0325320-mRNA-1:exon:10568;Parent=Msa0325320-mRNA-1 |
chr2_4 | five_prime_UTR | 32266714 | 32266760 | 32266714 | ID=Msa0325320-mRNA-1:five_prime_utr;Parent=Msa0325320-mRNA-1 |
chr2_4 | five_prime_UTR | 32266857 | 32266922 | 32266857 | ID=Msa0325320-mRNA-1:five_prime_utr;Parent=Msa0325320-mRNA-1 |
chr2_4 | CDS | 32266923 | 32266956 | 32266923 | ID=Msa0325320-mRNA-1:cds;Parent=Msa0325320-mRNA-1 |
chr2_4 | CDS | 32267088 | 32267132 | 32267088 | ID=Msa0325320-mRNA-1:cds;Parent=Msa0325320-mRNA-1 |
chr2_4 | CDS | 32267988 | 32268022 | 32267988 | ID=Msa0325320-mRNA-1:cds;Parent=Msa0325320-mRNA-1 |
chr2_4 | CDS | 32268110 | 32268160 | 32268110 | ID=Msa0325320-mRNA-1:cds;Parent=Msa0325320-mRNA-1 |
chr2_4 | CDS | 32270230 | 32270334 | 32270230 | ID=Msa0325320-mRNA-1:cds;Parent=Msa0325320-mRNA-1 |
chr2_4 | CDS | 32270414 | 32270485 | 32270414 | ID=Msa0325320-mRNA-1:cds;Parent=Msa0325320-mRNA-1 |
chr2_4 | CDS | 32270906 | 32270977 | 32270906 | ID=Msa0325320-mRNA-1:cds;Parent=Msa0325320-mRNA-1 |
chr2_4 | CDS | 32272265 | 32272345 | 32272265 | ID=Msa0325320-mRNA-1:cds;Parent=Msa0325320-mRNA-1 |
chr2_4 | CDS | 32272446 | 32272481 | 32272446 | ID=Msa0325320-mRNA-1:cds;Parent=Msa0325320-mRNA-1 |
chr2_4 | CDS | 32272721 | 32272779 | 32272721 | ID=Msa0325320-mRNA-1:cds;Parent=Msa0325320-mRNA-1 |
chr2_4 | CDS | 32272877 | 32272937 | 32272877 | ID=Msa0325320-mRNA-1:cds;Parent=Msa0325320-mRNA-1 |
chr2_4 | three_prime_UTR | 32272938 | 32273355 | 32272938 | ID=Msa0325320-mRNA-1:three_prime_utr;Parent=Msa0325320-mRNA-1 |
Gene Sequence |
Protein sequence |