AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0325320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0325320 MtrunA17_Chr2g0303251 100.000 216 0 0 1 216 1 216 3.41e-155 428
Msa0325320 MtrunA17_Chr1g0183621 73.364 214 53 1 1 214 5 214 2.69e-114 325
Msa0325320 MtrunA17_Chr7g0261511 77.103 214 45 1 1 214 1 210 1.86e-104 300
Msa0325320 MtrunA17_Chr2g0300321 40.909 220 124 1 3 216 4 223 1.04e-41 140
Msa0325320 MtrunA17_Chr8g0343561 43.750 176 99 0 3 178 4 179 1.35e-38 133
Msa0325320 MtrunA17_Chr4g0028231 29.730 222 148 1 1 214 5 226 1.07e-17 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0325320 AT5G44560.1 83.784 222 30 1 1 216 1 222 8.32e-130 365
Msa0325320 AT5G44560.2 83.168 202 28 1 21 216 1 202 2.16e-115 327
Msa0325320 AT5G44560.4 88.764 178 20 0 1 178 1 178 3.65e-114 324
Msa0325320 AT1G03950.1 71.963 214 56 1 1 214 1 210 1.09e-110 316
Msa0325320 AT5G44560.3 84.000 150 24 0 1 150 1 150 3.16e-88 257
Msa0325320 AT2G06530.1 41.518 224 123 2 1 216 2 225 5.24e-44 147
Msa0325320 AT2G06530.2 40.500 200 112 1 24 216 5 204 1.15e-36 127
Msa0325320 AT5G22950.1 32.589 224 141 3 1 214 5 228 1.47e-16 75.9

Find 71 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGTCCAAATTGTGAAAA+TGG 0.145046 2_4:+32273333 Msa0325320:three_prime_UTR
TGACAGGTTCTTGATGAAAT+TGG 0.228952 2_4:+32272440 Msa0325320:intron
CCTCTGCTTGGATTAGGTTT+TGG 0.243723 2_4:+32266888 Msa0325320:five_prime_UTR
CATTGCCACCATTGCTTTAG+TGG 0.261194 2_4:-32270457 None:intergenic
CCAGTTGTGCTGATTGCTTT+TGG 0.285128 2_4:-32270947 None:intergenic
AATTCTGCGTTTGTTTGTTT+AGG 0.295849 2_4:+32273100 Msa0325320:three_prime_UTR
GAGGAGAGACCTTTGGGCTT+GGG 0.317763 2_4:-32266748 None:intergenic
TTTCAAGTTCTTCAACATCT+TGG 0.321093 2_4:-32272886 None:intergenic
TAACATCCTCTGCTTGGATT+AGG 0.323944 2_4:+32266882 Msa0325320:five_prime_UTR
ATCACTTTAGCCTGCTTTGC+CGG 0.327935 2_4:-32270915 None:intergenic
CAACAATAAGATTGTATTAT+CGG 0.338889 2_4:+32272988 Msa0325320:three_prime_UTR
AGCAATGGTGGCAATGAATA+AGG 0.349876 2_4:+32270464 Msa0325320:CDS
TTCAAGTTCTTCAACATCTT+GGG 0.356079 2_4:-32272885 None:intergenic
GCCACTTGAAACATTTAGTT+AGG 0.365262 2_4:-32273153 None:intergenic
AGGGAAGTCGTGCACAGATC+AGG 0.381377 2_4:+32270291 Msa0325320:CDS
CTTGAAGCAATCCGACCTTT+CGG 0.382816 2_4:-32272733 None:intergenic
TGAAGAACTTGAAAAGAGAT+TGG 0.400428 2_4:+32272895 Msa0325320:CDS
TCCTGGCTCGGCAGCTAGTT+AGG 0.403556 2_4:+32270243 Msa0325320:CDS
CCAAAAGCAATCAGCACAAC+TGG 0.415296 2_4:+32270947 Msa0325320:CDS
AGAGGAGAGACCTTTGGGCT+TGG 0.420406 2_4:-32266749 None:intergenic
GAGCGTGTGCTGTGTATTGT+TGG 0.425905 2_4:-32266725 None:intergenic
GCAAGCACTTCAATCTCTAC+AGG 0.426499 2_4:+32270423 Msa0325320:CDS
AGAGAATTTATTTGCAGCTA+AGG 0.435040 2_4:+32273294 Msa0325320:three_prime_UTR
CGAAAGGTCGGATTGCTTCA+AGG 0.442942 2_4:+32272734 Msa0325320:CDS
TTCAATCTCTACAGGGATGA+AGG 0.458265 2_4:+32270431 Msa0325320:CDS
GTACCGCGGGCACCTGCATA+AGG 0.463608 2_4:+32273239 Msa0325320:three_prime_UTR
AGGAGAGACCTTTGGGCTTG+GGG 0.466236 2_4:-32266747 None:intergenic
TGGAGTGGATATTGCATCCC+AGG 0.474380 2_4:+32272460 Msa0325320:CDS
ACTGTCCAAATTGTGAAAAT+GGG 0.474853 2_4:+32273334 Msa0325320:three_prime_UTR
ACCTAACTAGCTGCCGAGCC+AGG 0.485867 2_4:-32270244 None:intergenic
TAGATATAAAGTATAGTTGT+GGG 0.487913 2_4:+32273045 Msa0325320:three_prime_UTR
GCAAATGGCACCGGCAAAGC+AGG 0.491669 2_4:+32270905 Msa0325320:intron
CCTGCAGATTAGTTATCTGT+TGG 0.504006 2_4:-32270271 None:intergenic
CCAACAGATAACTAATCTGC+AGG 0.509427 2_4:+32270271 Msa0325320:CDS
GGGAAGTCGTGCACAGATCA+GGG 0.524632 2_4:+32270292 Msa0325320:CDS
AGAGATAGCATCACTTCAGA+TGG 0.527919 2_4:+32267998 Msa0325320:CDS
ACAGGCTTCTACTAAAATCC+TGG 0.535270 2_4:+32270226 Msa0325320:intron
GATGAACGAACCTTTGGGTG+TGG 0.536552 2_4:-32266945 None:intergenic
CTACTGTAACATCCTCTGCT+TGG 0.536805 2_4:+32266876 Msa0325320:five_prime_UTR
ATCTTCTCAGCAAATGGCAC+CGG 0.537436 2_4:+32270896 Msa0325320:intron
ACTGCAGGAAAAGAAGTTAG+TGG 0.545088 2_4:+32268103 Msa0325320:intron
AGCGTGTGCTGTGTATTGTT+GGG 0.550408 2_4:-32266724 None:intergenic
GAAATGTCTGTTGCAACTAG+AGG 0.569526 2_4:+32267111 Msa0325320:CDS
TGATCTCATACACCTTATGC+AGG 0.569604 2_4:-32273251 None:intergenic
TTAGATATAAAGTATAGTTG+TGG 0.569645 2_4:+32273044 Msa0325320:three_prime_UTR
AATATAATCAGTAACAAATG+AGG 0.572412 2_4:-32273013 None:intergenic
AGTGGCAGAGATTAAAAGAG+AGG 0.575160 2_4:+32268121 Msa0325320:CDS
TCAATCTCTACAGGGATGAA+GGG 0.583879 2_4:+32270432 Msa0325320:CDS
TATCTTCTGCTCCGAAAGGT+CGG 0.586806 2_4:+32272722 Msa0325320:CDS
TGGCAGTCAATATGCTACTT+CGG 0.587003 2_4:+32273172 Msa0325320:three_prime_UTR
TCCTAACTAAATGTTTCAAG+TGG 0.596759 2_4:+32273152 Msa0325320:three_prime_UTR
CTTCTACTAAAATCCTGGCT+CGG 0.598970 2_4:+32270231 Msa0325320:CDS
GGTTCTTGATGAAATTGGAG+TGG 0.601589 2_4:+32272445 Msa0325320:intron
ATGCTGAAAATGCTGCTCCA+AGG 0.612137 2_4:+32272758 Msa0325320:CDS
CAAGCACTTCAATCTCTACA+GGG 0.614124 2_4:+32270424 Msa0325320:CDS
GATAGCATCACTTCAGATGG+AGG 0.618277 2_4:+32268001 Msa0325320:CDS
ATCAGCACAACTGGACATGA+CGG 0.620669 2_4:+32270956 Msa0325320:CDS
AAGAAGAAAACCACACCCAA+AGG 0.621044 2_4:+32266935 Msa0325320:CDS
GGGTGCCACTAAAGCAATGG+TGG 0.624027 2_4:+32270452 Msa0325320:CDS
GAAGGGTGCCACTAAAGCAA+TGG 0.625367 2_4:+32270449 Msa0325320:CDS
AGTCAATATGCTACTTCGGT+CGG 0.627899 2_4:+32273176 Msa0325320:three_prime_UTR
ATCAGAAGAACTCACTAACC+AGG 0.628471 2_4:+32272324 Msa0325320:CDS
ACACCTTATGCAGGTGCCCG+CGG 0.629981 2_4:-32273242 None:intergenic
TAGTTATCTTCTGCTCCGAA+AGG 0.634306 2_4:+32272718 Msa0325320:intron
CACACGCTCCCCAAGCCCAA+AGG 0.634408 2_4:+32266739 Msa0325320:five_prime_UTR
TTTAGACAAAGATGAAGCTG+AGG 0.636787 2_4:+32272297 Msa0325320:CDS
CCAAAACCTAATCCAAGCAG+AGG 0.637197 2_4:-32266888 None:intergenic
ATAAGGTGTATGAGATCACA+TGG 0.652977 2_4:+32273256 Msa0325320:three_prime_UTR
GGAAGTCGTGCACAGATCAG+GGG 0.664483 2_4:+32270293 Msa0325320:CDS
GGGTGTAGCAACTCACACAC+AGG 0.671175 2_4:+32270313 Msa0325320:CDS
CAACAGATAACTAATCTGCA+GGG 0.676896 2_4:+32270272 Msa0325320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTAAA+TGG - chr2_4:32267686-32267705 None:intergenic 0.0%
!! TCATATATAAAAAAATCAAA+TGG - chr2_4:32267240-32267259 None:intergenic 10.0%
!! AAAAAAAAAAAAAACAGTTA+AGG + chr2_4:32267692-32267711 Msa0325320:intron 10.0%
!!! AACTTTTATGAAAATTTTTA+CGG + chr2_4:32271178-32271197 Msa0325320:intron 10.0%
!!! TTAATTACTTTTATGAATAT+TGG + chr2_4:32272667-32272686 Msa0325320:intron 10.0%
!!! TAATTACTTTTATGAATATT+GGG + chr2_4:32272668-32272687 Msa0325320:intron 10.0%
!!! ATTTTTTTACCTTTCTAAAT+AGG + chr2_4:32267292-32267311 Msa0325320:intron 15.0%
!!! TAATTTTTTCCTATTTAGAA+AGG - chr2_4:32267304-32267323 None:intergenic 15.0%
!!! CATTATTTTAAGGTATTATA+AGG - chr2_4:32267327-32267346 None:intergenic 15.0%
!! AGTTACAATCAAATAATTAA+AGG + chr2_4:32267545-32267564 Msa0325320:intron 15.0%
!!! TCTTTATTTAGATGTATTTT+TGG + chr2_4:32268197-32268216 Msa0325320:intron 15.0%
!!! CTTTATTTAGATGTATTTTT+GGG + chr2_4:32268198-32268217 Msa0325320:intron 15.0%
!! TAAATAAATAGATTTCTAAC+TGG - chr2_4:32269932-32269951 None:intergenic 15.0%
!! ATATATATAATCTAATGCTA+TGG - chr2_4:32272120-32272139 None:intergenic 15.0%
!!! TAGATCGAATTTAAGATTTA+GGG - chr2_4:32266988-32267007 None:intergenic 20.0%
!!! TTATTCTTATTTTACAAGTC+TGG + chr2_4:32267145-32267164 Msa0325320:intron 20.0%
!! AATCAAATAATTAAAGGTGA+AGG + chr2_4:32267551-32267570 Msa0325320:intron 20.0%
!! ATCAAATAATTAAAGGTGAA+GGG + chr2_4:32267552-32267571 Msa0325320:intron 20.0%
!! AATAAAGATTGTTATCGATA+TGG - chr2_4:32268185-32268204 None:intergenic 20.0%
!!! TTGGGTATTTTTTTCTTAAT+TGG + chr2_4:32268216-32268235 Msa0325320:intron 20.0%
!!! TGGGTATTTTTTTCTTAATT+GGG + chr2_4:32268217-32268236 Msa0325320:intron 20.0%
!!! TTTTTTCTTAATTGGGATTA+AGG + chr2_4:32268224-32268243 Msa0325320:intron 20.0%
!! ATGATAGATATTTGTATGTT+TGG - chr2_4:32268408-32268427 None:intergenic 20.0%
!! GATCGTTTAAATACAAAAAT+TGG - chr2_4:32268734-32268753 None:intergenic 20.0%
!! AAAAATTGAATTTCAAGCTA+TGG - chr2_4:32269098-32269117 None:intergenic 20.0%
!! TCATTATCAATATTCATGAA+TGG - chr2_4:32269333-32269352 None:intergenic 20.0%
!! ATTTAGAGGAGAATTATATA+GGG - chr2_4:32269699-32269718 None:intergenic 20.0%
!!! TAATGATTTCTTTTTGCAAA+AGG - chr2_4:32269889-32269908 None:intergenic 20.0%
!!! TACATTGTTGTCTTTATTTT+TGG + chr2_4:32269993-32270012 Msa0325320:intron 20.0%
!!! AATTTCCAAATTTCTTTTGT+AGG + chr2_4:32270392-32270411 Msa0325320:intron 20.0%
!!! AATGAATAAGGTATATTTTC+TGG + chr2_4:32270476-32270495 Msa0325320:intron 20.0%
!!! ATGAATAAGGTATATTTTCT+GGG + chr2_4:32270477-32270496 Msa0325320:intron 20.0%
!! TTAAGTTACTCTTAACATAT+TGG - chr2_4:32270657-32270676 None:intergenic 20.0%
!!! CTTTTAGTATTTTTTTGAGA+GGG + chr2_4:32271043-32271062 Msa0325320:intron 20.0%
!!! GAACAATTATTAGTCTTTTT+TGG + chr2_4:32271116-32271135 Msa0325320:intron 20.0%
!! ATAAACTAGGAGTTAAATAA+AGG + chr2_4:32271309-32271328 Msa0325320:intron 20.0%
!! AATAATGAAATTGAAGAGTA+TGG + chr2_4:32271365-32271384 Msa0325320:intron 20.0%
!!! ATAATGAAATTGAAGAGTAT+GGG + chr2_4:32271366-32271385 Msa0325320:intron 20.0%
!! TGTAAGAACTAAAATAAGTA+AGG + chr2_4:32271680-32271699 Msa0325320:intron 20.0%
!! GTAAGAACTAAAATAAGTAA+GGG + chr2_4:32271681-32271700 Msa0325320:intron 20.0%
!!! ACATATTTTAAACTACCAAA+AGG + chr2_4:32271736-32271755 Msa0325320:intron 20.0%
!!! CATATTTTAAACTACCAAAA+GGG + chr2_4:32271737-32271756 Msa0325320:intron 20.0%
!!! ATATTTTAAACTACCAAAAG+GGG + chr2_4:32271738-32271757 Msa0325320:intron 20.0%
!!! CGGATAACATTATAAAATTT+TGG - chr2_4:32272152-32272171 None:intergenic 20.0%
!! GACTAACATAATGAAATATT+GGG - chr2_4:32272497-32272516 None:intergenic 20.0%
!! TGACTAACATAATGAAATAT+TGG - chr2_4:32272498-32272517 None:intergenic 20.0%
!! AATAAGATTGAAATATACCT+TGG - chr2_4:32272778-32272797 None:intergenic 20.0%
!! GTATATTTCAATCTTATTCA+TGG + chr2_4:32272780-32272799 Msa0325320:intron 20.0%
!! CAACAATAAGATTGTATTAT+CGG + chr2_4:32272988-32273007 Msa0325320:three_prime_UTR 20.0%
!! AATATAATCAGTAACAAATG+AGG - chr2_4:32273016-32273035 None:intergenic 20.0%
!! TTAGATATAAAGTATAGTTG+TGG + chr2_4:32273044-32273063 Msa0325320:three_prime_UTR 20.0%
!! TAGATATAAAGTATAGTTGT+GGG + chr2_4:32273045-32273064 Msa0325320:three_prime_UTR 20.0%
! AAAAAAGTAATGTAAGAGAG+AGG - chr2_4:32266770-32266789 None:intergenic 25.0%
!! CTAGATCGAATTTAAGATTT+AGG - chr2_4:32266989-32267008 None:intergenic 25.0%
! ATGAATTGCTAGAATAGAAA+AGG + chr2_4:32267262-32267281 Msa0325320:intron 25.0%
! TTCATAGCTTATAATTCGTA+GGG + chr2_4:32267492-32267511 Msa0325320:intron 25.0%
! TCAAATAATTAAAGGTGAAG+GGG + chr2_4:32267553-32267572 Msa0325320:intron 25.0%
!! GTATAACTTTTCTTTCTTGT+AGG + chr2_4:32267966-32267985 Msa0325320:intron 25.0%
! AGATATTTGTATGTTTGGAT+TGG - chr2_4:32268403-32268422 None:intergenic 25.0%
! TAAAGGTCTGTTTACTAAAT+GGG - chr2_4:32268518-32268537 None:intergenic 25.0%
! ATAAAGGTCTGTTTACTAAA+TGG - chr2_4:32268519-32268538 None:intergenic 25.0%
! ACTACAGTTAAAGATTGTAT+TGG - chr2_4:32268678-32268697 None:intergenic 25.0%
! AAAAATTGGATTTCAAGCTA+TGG - chr2_4:32268720-32268739 None:intergenic 25.0%
! ATAAAGGTCTGATTACTAAA+CGG - chr2_4:32268899-32268918 None:intergenic 25.0%
! TCTTAAGGACACAATAAATT+GGG - chr2_4:32269411-32269430 None:intergenic 25.0%
! TTCTTAAGGACACAATAAAT+TGG - chr2_4:32269412-32269431 None:intergenic 25.0%
!! ACATGTTCTTGATTTTCTTA+AGG - chr2_4:32269426-32269445 None:intergenic 25.0%
! GATTTAGAGGAGAATTATAT+AGG - chr2_4:32269700-32269719 None:intergenic 25.0%
!! ATATTCAAAGCATTTCTTCA+TGG - chr2_4:32269724-32269743 None:intergenic 25.0%
!! GTTTCTTTTTACAACTAGTT+TGG + chr2_4:32269842-32269861 Msa0325320:intron 25.0%
!! GGATGTTTATGATTGTTATT+AGG - chr2_4:32269868-32269887 None:intergenic 25.0%
! CAAAAAGAAATCATTATGCT+AGG + chr2_4:32269893-32269912 Msa0325320:intron 25.0%
! TAAATAGATTTCTAACTGGA+CGG - chr2_4:32269928-32269947 None:intergenic 25.0%
!!! TGTCTTTATTTTTGGTTGAA+TGG + chr2_4:32270001-32270020 Msa0325320:intron 25.0%
!!! TTTATTTTTGGTTGAATGGA+GGG + chr2_4:32270005-32270024 Msa0325320:intron 25.0%
!! AAAATTCTTCTTTCTTTTCG+AGG + chr2_4:32270345-32270364 Msa0325320:intron 25.0%
!! AAATTCTTCTTTCTTTTCGA+GGG + chr2_4:32270346-32270365 Msa0325320:intron 25.0%
! TAATGCCTACAAAAGAAATT+TGG - chr2_4:32270400-32270419 None:intergenic 25.0%
!! CTTTCCATTGTTCAAAATTT+TGG + chr2_4:32270509-32270528 Msa0325320:intron 25.0%
!! TAGTCCAAAATTTTGAACAA+TGG - chr2_4:32270516-32270535 None:intergenic 25.0%
! AAGAGTAACTTAACTTTCAT+AGG + chr2_4:32270664-32270683 Msa0325320:intron 25.0%
!!! GCTTTTAGTATTTTTTTGAG+AGG + chr2_4:32271042-32271061 Msa0325320:intron 25.0%
! AGACTAATAATTGTTCATTG+TGG - chr2_4:32271112-32271131 None:intergenic 25.0%
! GTGCTTACTTAATAGAAATT+TGG + chr2_4:32271233-32271252 Msa0325320:intron 25.0%
!! TAATGAAATTGAAGAGTATG+GGG + chr2_4:32271367-32271386 Msa0325320:intron 25.0%
! AAAGAGAAAAAAAACACAGA+AGG + chr2_4:32271532-32271551 Msa0325320:intron 25.0%
!!! ACAAATACTTTTGAAGATTG+TGG + chr2_4:32271577-32271596 Msa0325320:intron 25.0%
!!! CAAATACTTTTGAAGATTGT+GGG + chr2_4:32271578-32271597 Msa0325320:intron 25.0%
!! AAGTTTCTCTTTTATTAGCT+TGG + chr2_4:32272022-32272041 Msa0325320:intron 25.0%
! CAGAAAATATTGATGAAACT+TGG + chr2_4:32272193-32272212 Msa0325320:intron 25.0%
! TTTCGGATAACATAAATTGT+TGG - chr2_4:32272240-32272259 None:intergenic 25.0%
!! GATTTTCATTTATTCATGAC+AGG + chr2_4:32272424-32272443 Msa0325320:intron 25.0%
!!! ATTCTGTTTTTCTCTTCTTA+TGG + chr2_4:32272695-32272714 Msa0325320:intron 25.0%
GAATCAACACGGTAATAATT+TGG - chr2_4:32267445-32267464 None:intergenic 30.0%
CTTCATAGCTTATAATTCGT+AGG + chr2_4:32267491-32267510 Msa0325320:intron 30.0%
TCATAGCTTATAATTCGTAG+GGG + chr2_4:32267493-32267512 Msa0325320:intron 30.0%
CAAATAATTAAAGGTGAAGG+GGG + chr2_4:32267554-32267573 Msa0325320:intron 30.0%
AAATAATTAAAGGTGAAGGG+GGG + chr2_4:32267555-32267574 Msa0325320:intron 30.0%
TATGAGTTAGCAAAGCTTTA+TGG + chr2_4:32267735-32267754 Msa0325320:intron 30.0%
ATTAAAAGAGAGGCAAAAAC+TGG + chr2_4:32268131-32268150 Msa0325320:CDS 30.0%
! TATTTGTATGTTTGGATTGG+CGG - chr2_4:32268400-32268419 None:intergenic 30.0%
CAAGATCTTATGGACAAATT+GGG - chr2_4:32268432-32268451 None:intergenic 30.0%
TCAAGATCTTATGGACAAAT+TGG - chr2_4:32268433-32268452 None:intergenic 30.0%
AAAGCAGTTTCAAGATCTTA+TGG - chr2_4:32268442-32268461 None:intergenic 30.0%
CATCAAAGAAAAGGTGATAA+AGG - chr2_4:32268535-32268554 None:intergenic 30.0%
! AGATTATGAGCATTGCTAAT+AGG + chr2_4:32268598-32268617 Msa0325320:intron 30.0%
!!! ATTGCTAATAGGCTGTTTTT+TGG + chr2_4:32268609-32268628 Msa0325320:intron 30.0%
AGAAGTTTCGTATTTAGTTG+AGG + chr2_4:32268648-32268667 Msa0325320:intron 30.0%
TAAAGGTCTGATTACTAAAC+GGG - chr2_4:32268898-32268917 None:intergenic 30.0%
CATCAAAGAAAAGGTGATAA+AGG - chr2_4:32268535-32268554 None:intergenic 30.0%
ACTATAGTTGAAGGTTGTAT+TGG - chr2_4:32269056-32269075 None:intergenic 30.0%
ATGTCAGTAACTATAGTTGA+AGG - chr2_4:32269065-32269084 None:intergenic 30.0%
TAGCACATTAAGTCAAGAAT+GGG - chr2_4:32269280-32269299 None:intergenic 30.0%
TTAGCACATTAAGTCAAGAA+TGG - chr2_4:32269281-32269300 None:intergenic 30.0%
AATCAAGAACATGTTTGCTT+TGG + chr2_4:32269432-32269451 Msa0325320:intron 30.0%
ATCAAGAACATGTTTGCTTT+GGG + chr2_4:32269433-32269452 Msa0325320:intron 30.0%
AAAGCTAAAATGCTTGTAGT+TGG - chr2_4:32269491-32269510 None:intergenic 30.0%
! AACAATTGACTTTGACACAA+AGG - chr2_4:32269521-32269540 None:intergenic 30.0%
TTTGTGTCAAAGTCAATTGT+TGG + chr2_4:32269520-32269539 Msa0325320:intron 30.0%
ATTTCTTCATGGAGATTTAG+AGG - chr2_4:32269713-32269732 None:intergenic 30.0%
AATTACAAGCAAGAAAGAGT+AGG + chr2_4:32269783-32269802 Msa0325320:intron 30.0%
AAAAGAAACATTTACACCAG+TGG - chr2_4:32269831-32269850 None:intergenic 30.0%
AAAGAAATCATTATGCTAGG+CGG + chr2_4:32269896-32269915 Msa0325320:intron 30.0%
!!! CTTTATTTTTGGTTGAATGG+AGG + chr2_4:32270004-32270023 Msa0325320:intron 30.0%
ATTTAATAGTGCTTCCAGTT+GGG - chr2_4:32270122-32270141 None:intergenic 30.0%
AATTTAATAGTGCTTCCAGT+TGG - chr2_4:32270123-32270142 None:intergenic 30.0%
! TTGCTAAATAATGAAGTGTC+TGG + chr2_4:32270201-32270220 Msa0325320:intron 30.0%
TTGTATTGAAGTGTAAACCA+TGG - chr2_4:32270728-32270747 None:intergenic 30.0%
ACTTTAGATTCAATGCAAAC+AGG - chr2_4:32270782-32270801 None:intergenic 30.0%
! TAATGTGTTAGATGCTTTTC+TGG + chr2_4:32270805-32270824 Msa0325320:intron 30.0%
!!! TTAGTATTTTTTTGAGAGGG+AGG + chr2_4:32271046-32271065 Msa0325320:intron 30.0%
! CCTTCAATTAGTTCTTTATC+TGG - chr2_4:32271282-32271301 None:intergenic 30.0%
CCAGATAAAGAACTAATTGA+AGG + chr2_4:32271279-32271298 Msa0325320:intron 30.0%
TGAAGGAACAACAATAAACT+AGG + chr2_4:32271296-32271315 Msa0325320:intron 30.0%
! TTAGTTCTTACACTTACGTT+TGG - chr2_4:32271672-32271691 None:intergenic 30.0%
ATATAATCTAATGCTATGGC+TGG - chr2_4:32272116-32272135 None:intergenic 30.0%
GTCATTTATGTATATGTACC+TGG - chr2_4:32272345-32272364 None:intergenic 30.0%
ATGAAAATCAGATATGACAG+AGG - chr2_4:32272413-32272432 None:intergenic 30.0%
AAGAAGAGAAAAACAGAATC+AGG - chr2_4:32272694-32272713 None:intergenic 30.0%
! TTCAAGTTCTTCAACATCTT+GGG - chr2_4:32272888-32272907 None:intergenic 30.0%
!! TTTCAAGTTCTTCAACATCT+TGG - chr2_4:32272889-32272908 None:intergenic 30.0%
TGAAGAACTTGAAAAGAGAT+TGG + chr2_4:32272895-32272914 Msa0325320:CDS 30.0%
AATTCTGCGTTTGTTTGTTT+AGG + chr2_4:32273100-32273119 Msa0325320:three_prime_UTR 30.0%
TCCTAACTAAATGTTTCAAG+TGG + chr2_4:32273152-32273171 Msa0325320:three_prime_UTR 30.0%
AGAGAATTTATTTGCAGCTA+AGG + chr2_4:32273294-32273313 Msa0325320:three_prime_UTR 30.0%
CTTGAATGTAACCAATGTGT+CGG - chr2_4:32267409-32267428 None:intergenic 35.0%
GAACAGACATTGAATCAACA+CGG - chr2_4:32267456-32267475 None:intergenic 35.0%
!!! CGTAGGGGTTTTTTAATGTT+TGG + chr2_4:32267508-32267527 Msa0325320:intron 35.0%
TGATTTGAGCTAAGGGTTAA+TGG + chr2_4:32267588-32267607 Msa0325320:intron 35.0%
TCAAGTAAACTCCAATGGTT+TGG - chr2_4:32267851-32267870 None:intergenic 35.0%
CTTCATCAAGTAAACTCCAA+TGG - chr2_4:32267856-32267875 None:intergenic 35.0%
TTGGAGTTTACTTGATGAAG+TGG + chr2_4:32267856-32267875 Msa0325320:intron 35.0%
CTTCTGATGTTACAAGACTT+TGG + chr2_4:32267902-32267921 Msa0325320:intron 35.0%
ACTTATTCCTCAACTAGAGA+GGG - chr2_4:32268310-32268329 None:intergenic 35.0%
CAGTGGAATTGTCATAATCA+CGG + chr2_4:32268345-32268364 Msa0325320:intron 35.0%
ACATCAATTGGTAGGTTTGT+TGG - chr2_4:32268484-32268503 None:intergenic 35.0%
TAGCATAATGAGACAATGCA+AGG - chr2_4:32268572-32268591 None:intergenic 35.0%
ACGACACTTCATCAAAGAAA+AGG - chr2_4:32268924-32268943 None:intergenic 35.0%
TAGTTGAAGGTTGTATTGGA+TGG - chr2_4:32269052-32269071 None:intergenic 35.0%
! CAAGTACGTATAAGAGTATG+AGG + chr2_4:32269177-32269196 Msa0325320:intron 35.0%
!! TAGAGGGAATTTTCTAGAAG+TGG - chr2_4:32269257-32269276 None:intergenic 35.0%
TTAAGTCAAGAATGGGTAGA+GGG - chr2_4:32269273-32269292 None:intergenic 35.0%
ATTAAGTCAAGAATGGGTAG+AGG - chr2_4:32269274-32269293 None:intergenic 35.0%
TCCTTTATTGCTTGTACTCT+TGG + chr2_4:32269307-32269326 Msa0325320:intron 35.0%
! ACACAATAAATTGGGTTGCA+AGG - chr2_4:32269403-32269422 None:intergenic 35.0%
TCATGCATTCCAAATCAGTT+CGG - chr2_4:32270165-32270184 None:intergenic 35.0%
! ATAATGAAGTGTCTGGTTAC+AGG + chr2_4:32270208-32270227 Msa0325320:intron 35.0%
CAACAGATAACTAATCTGCA+GGG + chr2_4:32270272-32270291 Msa0325320:CDS 35.0%
ACAATCAGTTTATGACCCAA+AGG + chr2_4:32270571-32270590 Msa0325320:intron 35.0%
CAATCAGTTTATGACCCAAA+GGG + chr2_4:32270572-32270591 Msa0325320:intron 35.0%
TTTGTTTGCTTCTTTGGCAA+AGG - chr2_4:32270625-32270644 None:intergenic 35.0%
!! TGTTGCTTTGTTTGCTTCTT+TGG - chr2_4:32270631-32270650 None:intergenic 35.0%
ATTGAAGTGTAAACCATGGA+TGG - chr2_4:32270724-32270743 None:intergenic 35.0%
! ATTTGCTGAGAAGATAAGCA+AGG - chr2_4:32270891-32270910 None:intergenic 35.0%
TTGCTTATCTTCTCAGCAAA+TGG + chr2_4:32270890-32270909 Msa0325320:intron 35.0%
ATTAAGTAAGCACCACCTTT+GGG - chr2_4:32271226-32271245 None:intergenic 35.0%
TATTAAGTAAGCACCACCTT+TGG - chr2_4:32271227-32271246 None:intergenic 35.0%
TTGTGAAACTGTCATCAAGA+TGG + chr2_4:32271401-32271420 Msa0325320:intron 35.0%
ACTATACTGAAGACGATAGT+GGG + chr2_4:32271466-32271485 Msa0325320:intron 35.0%
TTCTAGCAAAAGCAAGGTAA+TGG + chr2_4:32271830-32271849 Msa0325320:intron 35.0%
TTCTAGCAAAAGCAAGGTAA+TGG + chr2_4:32271830-32271849 Msa0325320:intron 35.0%
CATCATCTCAATCTGCATTT+CGG - chr2_4:32272257-32272276 None:intergenic 35.0%
TTTAGACAAAGATGAAGCTG+AGG + chr2_4:32272297-32272316 Msa0325320:CDS 35.0%
TGACAGGTTCTTGATGAAAT+TGG + chr2_4:32272440-32272459 Msa0325320:intron 35.0%
! AAATCACGTGTTTTCACACA+AGG + chr2_4:32272532-32272551 Msa0325320:intron 35.0%
CGAATTGTTAGTTCATAGCA+TGG + chr2_4:32272565-32272584 Msa0325320:intron 35.0%
GCCACTTGAAACATTTAGTT+AGG - chr2_4:32273156-32273175 None:intergenic 35.0%
! GTTGAATTTTATCTGTACCG+CGG + chr2_4:32273225-32273244 Msa0325320:three_prime_UTR 35.0%
! TTGAATTTTATCTGTACCGC+GGG + chr2_4:32273226-32273245 Msa0325320:three_prime_UTR 35.0%
ATAAGGTGTATGAGATCACA+TGG + chr2_4:32273256-32273275 Msa0325320:three_prime_UTR 35.0%
TAACATCCTCTGCTTGGATT+AGG + chr2_4:32266882-32266901 Msa0325320:five_prime_UTR 40.0%
AAGAAGAAAACCACACCCAA+AGG + chr2_4:32266935-32266954 Msa0325320:CDS 40.0%
AGAGAGATGAACGAACCTTT+GGG - chr2_4:32266953-32266972 None:intergenic 40.0%
AAGAGAGATGAACGAACCTT+TGG - chr2_4:32266954-32266973 None:intergenic 40.0%
GAAATGTCTGTTGCAACTAG+AGG + chr2_4:32267111-32267130 Msa0325320:CDS 40.0%
! AGCTCATCTGATTTGAGCTA+AGG + chr2_4:32267580-32267599 Msa0325320:intron 40.0%
! GCTCATCTGATTTGAGCTAA+GGG + chr2_4:32267581-32267600 Msa0325320:intron 40.0%
TTAATGGAGTTGGAGATCCT+TGG + chr2_4:32267604-32267623 Msa0325320:intron 40.0%
! AGCTTTATGGCACTCACAAA+TGG + chr2_4:32267748-32267767 Msa0325320:intron 40.0%
TTTACATTTACCTCCCTCCA+AGG + chr2_4:32267772-32267791 Msa0325320:intron 40.0%
TTACATTTACCTCCCTCCAA+GGG + chr2_4:32267773-32267792 Msa0325320:intron 40.0%
!! TGGACAAGTATTGGATACAG+AGG - chr2_4:32267823-32267842 None:intergenic 40.0%
! TTGGTCTAGTGGACAAGTAT+TGG - chr2_4:32267832-32267851 None:intergenic 40.0%
GACTTTGGTAGAAGTTAGCA+AGG + chr2_4:32267917-32267936 Msa0325320:intron 40.0%
AGAGATAGCATCACTTCAGA+TGG + chr2_4:32267998-32268017 Msa0325320:CDS 40.0%
CAAGGCAGTTAAGCACTAAA+AGG - chr2_4:32268080-32268099 None:intergenic 40.0%
! TTCTTTTCCTGCAGTAGACA+AGG - chr2_4:32268098-32268117 None:intergenic 40.0%
ACTGCAGGAAAAGAAGTTAG+TGG + chr2_4:32268103-32268122 Msa0325320:intron 40.0%
AGTGGCAGAGATTAAAAGAG+AGG + chr2_4:32268121-32268140 Msa0325320:CDS 40.0%
AGAGGCAAAAACTGGAAATG+AGG + chr2_4:32268139-32268158 Msa0325320:CDS 40.0%
TTATTCCTCAACTAGAGAGG+GGG - chr2_4:32268308-32268327 None:intergenic 40.0%
CTTATTCCTCAACTAGAGAG+GGG - chr2_4:32268309-32268328 None:intergenic 40.0%
CACTTATTCCTCAACTAGAG+AGG - chr2_4:32268311-32268330 None:intergenic 40.0%
! GTGTATGTTTGATTCGTCAG+TGG + chr2_4:32268328-32268347 Msa0325320:intron 40.0%
GTATGACAAAATCACGGTGT+GGG - chr2_4:32268374-32268393 None:intergenic 40.0%
!! TTGGTAGGTTTGTTGGTTAG+AGG - chr2_4:32268477-32268496 None:intergenic 40.0%
AACCTACCAATTGATGTCCA+AGG + chr2_4:32268487-32268506 Msa0325320:intron 40.0%
ACCTACCAATTGATGTCCAA+GGG + chr2_4:32268488-32268507 Msa0325320:intron 40.0%
TTACTAAATGGGTGTTCCCT+TGG - chr2_4:32268507-32268526 None:intergenic 40.0%
ACGACGCTTCATCAAAGAAA+AGG - chr2_4:32268544-32268563 None:intergenic 40.0%
TCAGTTTCTGACTACTTCAG+AGG + chr2_4:32268762-32268781 Msa0325320:intron 40.0%
ATGCAGTATCAGTCATCGAT+TGG - chr2_4:32268834-32268853 None:intergenic 40.0%
!! GGGAATTTTCTAGAAGTGGT+GGG - chr2_4:32268871-32268890 None:intergenic 40.0%
!! TAGGGGGAATTTTCTAGAAG+TGG - chr2_4:32268875-32268894 None:intergenic 40.0%
TCTGATTACTAAACGGGTAG+GGG - chr2_4:32268892-32268911 None:intergenic 40.0%
GTCTGATTACTAAACGGGTA+GGG - chr2_4:32268893-32268912 None:intergenic 40.0%
! AGATTATGAGCATTGCCAGT+AGG + chr2_4:32268977-32268996 Msa0325320:intron 40.0%
AGAAGCTCCGTATTTAGTTG+AGG + chr2_4:32269026-32269045 Msa0325320:intron 40.0%
TGGATGGCCTCAACTAAATA+CGG - chr2_4:32269036-32269055 None:intergenic 40.0%
GAATTTCAAGCTATGGCTCA+AGG - chr2_4:32269091-32269110 None:intergenic 40.0%
GTTCAGTTTCTTACTACTCC+AGG + chr2_4:32269138-32269157 Msa0325320:intron 40.0%
ATGCAGTATTAGTCACCGAT+TGG - chr2_4:32269210-32269229 None:intergenic 40.0%
!! GGGAATTTTCTAGAAGTGGT+GGG - chr2_4:32268871-32268890 None:intergenic 40.0%
!! AGGGAATTTTCTAGAAGTGG+TGG - chr2_4:32269254-32269273 None:intergenic 40.0%
! GCCAAGAGTACAAGCAATAA+AGG - chr2_4:32269311-32269330 None:intergenic 40.0%
!! GTTTGCTTTGGGAAATGAAG+AGG + chr2_4:32269444-32269463 Msa0325320:intron 40.0%
TATGTTGAGACGTCTGTTGA+AGG - chr2_4:32269551-32269570 None:intergenic 40.0%
GAATAAGAGGTCCTTAGTTG+AGG - chr2_4:32269667-32269686 None:intergenic 40.0%
AGGGATTCTGCTTGAATAAG+AGG - chr2_4:32269680-32269699 None:intergenic 40.0%
AAACATTTACACCAGTGGCA+AGG - chr2_4:32269826-32269845 None:intergenic 40.0%
TGTGTGTATCCGAACTGATT+TGG + chr2_4:32270153-32270172 Msa0325320:intron 40.0%
ACAGGCTTCTACTAAAATCC+TGG + chr2_4:32270226-32270245 Msa0325320:intron 40.0%
CTTCTACTAAAATCCTGGCT+CGG + chr2_4:32270231-32270250 Msa0325320:CDS 40.0%
! CCTGCAGATTAGTTATCTGT+TGG - chr2_4:32270274-32270293 None:intergenic 40.0%
CCAACAGATAACTAATCTGC+AGG + chr2_4:32270271-32270290 Msa0325320:CDS 40.0%
CAAGCACTTCAATCTCTACA+GGG + chr2_4:32270424-32270443 Msa0325320:CDS 40.0%
TTCAATCTCTACAGGGATGA+AGG + chr2_4:32270431-32270450 Msa0325320:CDS 40.0%
TCAATCTCTACAGGGATGAA+GGG + chr2_4:32270432-32270451 Msa0325320:CDS 40.0%
AGCAATGGTGGCAATGAATA+AGG + chr2_4:32270464-32270483 Msa0325320:CDS 40.0%
GGAAATGTTTGACAGAAGAC+TGG + chr2_4:32270685-32270704 Msa0325320:intron 40.0%
TCATTGTGGTGTGCAATCTT+TGG - chr2_4:32271098-32271117 None:intergenic 40.0%
TTTCGCCAGTATTAGACTGT+TGG + chr2_4:32271154-32271173 Msa0325320:intron 40.0%
TTCGCCAGTATTAGACTGTT+GGG + chr2_4:32271155-32271174 Msa0325320:intron 40.0%
AGTTCCCAACAGTCTAATAC+TGG - chr2_4:32271162-32271181 None:intergenic 40.0%
CACTATCGTCTTCAGTATAG+TGG - chr2_4:32271467-32271486 None:intergenic 40.0%
CACTATACTGAAGACGATAG+TGG + chr2_4:32271465-32271484 Msa0325320:intron 40.0%
AAACACAGAAGGAGAACTTG+AGG + chr2_4:32271543-32271562 Msa0325320:intron 40.0%
TCAGAATATTGCTGTGACGT+GGG + chr2_4:32271704-32271723 Msa0325320:intron 40.0%
GGAAACTTGTCACAGCAATT+GGG + chr2_4:32271759-32271778 Msa0325320:intron 40.0%
GAAACTTGTCACAGCAATTG+GGG + chr2_4:32271760-32271779 Msa0325320:intron 40.0%
ACTCAACCAGCTTCAATTTG+TGG + chr2_4:32271893-32271912 Msa0325320:intron 40.0%
TACTCTGTTGTACTCAACCA+TGG + chr2_4:32271882-32271901 Msa0325320:intron 40.0%
! CTGCTTTAAGTACTACCATG+AGG - chr2_4:32272090-32272109 None:intergenic 40.0%
CTCATGGTAGTACTTAAAGC+AGG + chr2_4:32272088-32272107 Msa0325320:intron 40.0%
CATCATCTCAAACTGCATCT+CGG - chr2_4:32272172-32272191 None:intergenic 40.0%
ATCAGAAGAACTCACTAACC+AGG + chr2_4:32272324-32272343 Msa0325320:CDS 40.0%
GGTTCTTGATGAAATTGGAG+TGG + chr2_4:32272445-32272464 Msa0325320:intron 40.0%
ATTGGGCTCAAAACAAACCT+GGG - chr2_4:32272480-32272499 None:intergenic 40.0%
TATTGGGCTCAAAACAAACC+TGG - chr2_4:32272481-32272500 None:intergenic 40.0%
CCAACTACTCGAAAACTCTT+AGG - chr2_4:32272613-32272632 None:intergenic 40.0%
!!! CCTAAGAGTTTTCGAGTAGT+TGG + chr2_4:32272610-32272629 Msa0325320:intron 40.0%
TAGTTATCTTCTGCTCCGAA+AGG + chr2_4:32272718-32272737 Msa0325320:intron 40.0%
! TGGCAGTCAATATGCTACTT+CGG + chr2_4:32273172-32273191 Msa0325320:three_prime_UTR 40.0%
! AGTCAATATGCTACTTCGGT+CGG + chr2_4:32273176-32273195 Msa0325320:three_prime_UTR 40.0%
TGATCTCATACACCTTATGC+AGG - chr2_4:32273254-32273273 None:intergenic 40.0%
AGCGTGTGCTGTGTATTGTT+GGG - chr2_4:32266727-32266746 None:intergenic 45.0%
AAGAGAGAGGAGAGACCTTT+GGG - chr2_4:32266757-32266776 None:intergenic 45.0%
TAAGAGAGAGGAGAGACCTT+TGG - chr2_4:32266758-32266777 None:intergenic 45.0%
CTACTGTAACATCCTCTGCT+TGG + chr2_4:32266876-32266895 Msa0325320:five_prime_UTR 45.0%
CCAAAACCTAATCCAAGCAG+AGG - chr2_4:32266891-32266910 None:intergenic 45.0%
!! CCTCTGCTTGGATTAGGTTT+TGG + chr2_4:32266888-32266907 Msa0325320:five_prime_UTR 45.0%
CATCGACACTTCACACATTG+AGG + chr2_4:32267378-32267397 Msa0325320:intron 45.0%
GAGCTAAGGGTTAATGGAGT+TGG + chr2_4:32267594-32267613 Msa0325320:intron 45.0%
GTATTGGATACAGAGGTTCC+AGG - chr2_4:32267816-32267835 None:intergenic 45.0%
TGTCCACTAGACCAAACCAT+TGG + chr2_4:32267837-32267856 Msa0325320:intron 45.0%
!! ACTCCAATGGTTTGGTCTAG+TGG - chr2_4:32267843-32267862 None:intergenic 45.0%
GATAGCATCACTTCAGATGG+AGG + chr2_4:32268001-32268020 Msa0325320:CDS 45.0%
TTAACTGCCTTGTCTACTGC+AGG + chr2_4:32268088-32268107 Msa0325320:intron 45.0%
CGTATGACAAAATCACGGTG+TGG - chr2_4:32268375-32268394 None:intergenic 45.0%
CGGTGCGTATGACAAAATCA+CGG - chr2_4:32268380-32268399 None:intergenic 45.0%
TCCCTTGGACATCAATTGGT+AGG - chr2_4:32268492-32268511 None:intergenic 45.0%
GTGTTCCCTTGGACATCAAT+TGG - chr2_4:32268496-32268515 None:intergenic 45.0%
! CAAGCGCGTATAAGAGTATG+AGG + chr2_4:32268801-32268820 Msa0325320:intron 45.0%
! CAGTATCAGTCATCGATTGG+AGG - chr2_4:32268831-32268850 None:intergenic 45.0%
!! GGGGAATTTTCTAGAAGTGG+TGG - chr2_4:32268872-32268891 None:intergenic 45.0%
CTGATTACTAAACGGGTAGG+GGG - chr2_4:32268891-32268910 None:intergenic 45.0%
GGTCTGATTACTAAACGGGT+AGG - chr2_4:32268894-32268913 None:intergenic 45.0%
! TTATGAGCATTGCCAGTAGG+TGG + chr2_4:32268980-32268999 Msa0325320:intron 45.0%
! CATTGCCAGTAGGTGGTTTT+TGG + chr2_4:32268987-32269006 Msa0325320:intron 45.0%
TGTCTAGAGACTTTGTTGCC+TGG - chr2_4:32269159-32269178 None:intergenic 45.0%
GTATGAGGTTGACCTCCAAT+CGG + chr2_4:32268816-32268835 Msa0325320:intron 45.0%
! CAGTATTAGTCACCGATTGG+AGG - chr2_4:32269207-32269226 None:intergenic 45.0%
GGAGTTGCTTATTCGCAACA+AGG - chr2_4:32269470-32269489 None:intergenic 45.0%
AGTCGTACAGTCTTCGTTTG+TGG + chr2_4:32269575-32269594 Msa0325320:intron 45.0%
AACCATCTCTCGTGCTTGAT+TGG - chr2_4:32269607-32269626 None:intergenic 45.0%
TGCACACCATTCCTCAACTA+AGG + chr2_4:32269653-32269672 Msa0325320:intron 45.0%
AGAGGTCCTTAGTTGAGGAA+TGG - chr2_4:32269662-32269681 None:intergenic 45.0%
AATCATTATGCTAGGCGGAG+AGG + chr2_4:32269901-32269920 Msa0325320:intron 45.0%
ATCATTATGCTAGGCGGAGA+GGG + chr2_4:32269902-32269921 Msa0325320:intron 45.0%
TACTGTAGTATCTGCCCAAC+TGG + chr2_4:32270105-32270124 Msa0325320:intron 45.0%
GCAAGCACTTCAATCTCTAC+AGG + chr2_4:32270423-32270442 Msa0325320:CDS 45.0%
CATTGCCACCATTGCTTTAG+TGG - chr2_4:32270460-32270479 None:intergenic 45.0%
GTTTATGACCCAAAGGGTAG+AGG + chr2_4:32270578-32270597 Msa0325320:intron 45.0%
CAAGACAACCTCTACCCTTT+GGG - chr2_4:32270589-32270608 None:intergenic 45.0%
TCAAGACAACCTCTACCCTT+TGG - chr2_4:32270590-32270609 None:intergenic 45.0%
ATCTTCTCAGCAAATGGCAC+CGG + chr2_4:32270896-32270915 Msa0325320:intron 45.0%
ATCACTTTAGCCTGCTTTGC+CGG - chr2_4:32270918-32270937 None:intergenic 45.0%
!!! CCAGTTGTGCTGATTGCTTT+TGG - chr2_4:32270950-32270969 None:intergenic 45.0%
CCAAAAGCAATCAGCACAAC+TGG + chr2_4:32270947-32270966 Msa0325320:CDS 45.0%
ATCAGCACAACTGGACATGA+CGG + chr2_4:32270956-32270975 Msa0325320:CDS 45.0%
ATACTGGCGAAACACTGGAT+TGG - chr2_4:32271146-32271165 None:intergenic 45.0%
GTCTAATACTGGCGAAACAC+TGG - chr2_4:32271151-32271170 None:intergenic 45.0%
GCATTGTATGATCCACCCAA+AGG + chr2_4:32271208-32271227 Msa0325320:intron 45.0%
TTGTATGATCCACCCAAAGG+TGG + chr2_4:32271211-32271230 Msa0325320:intron 45.0%
ATCGTCTTCAGTATAGTGGC+AGG - chr2_4:32271463-32271482 None:intergenic 45.0%
ACAGAAGGAGAACTTGAGGT+TGG + chr2_4:32271547-32271566 Msa0325320:intron 45.0%
GAAGATTGTGGGCAATAGAG+AGG + chr2_4:32271589-32271608 Msa0325320:intron 45.0%
GTCAGAATATTGCTGTGACG+TGG + chr2_4:32271703-32271722 Msa0325320:intron 45.0%
! CTGTGACAAGTTTCCCCTTT+TGG - chr2_4:32271754-32271773 None:intergenic 45.0%
GGGAAACTTGTCACAGCAAT+TGG + chr2_4:32271758-32271777 Msa0325320:intron 45.0%
GAGGTCACAGGTTCAATTTG+TGG + chr2_4:32271800-32271819 Msa0325320:intron 45.0%
ACCAGCTTCTAGCAAAAGCA+AGG + chr2_4:32271824-32271843 Msa0325320:intron 45.0%
!! ACCTTGCTTTTGCTAGAAGC+TGG - chr2_4:32271828-32271847 None:intergenic 45.0%
GGTTGAGTACAACAGAGTAC+TGG - chr2_4:32271881-32271900 None:intergenic 45.0%
CTGGTTCCACAAATTGAAGC+TGG - chr2_4:32271902-32271921 None:intergenic 45.0%
ACCAGCTTCTAGCAAAAGCA+AGG + chr2_4:32271824-32271843 Msa0325320:intron 45.0%
!! ACCTTGCTTTTGCTAGAAGC+TGG - chr2_4:32271828-32271847 None:intergenic 45.0%
GGTTGAGTACAACAGAGTAC+TGG - chr2_4:32271881-32271900 None:intergenic 45.0%
AGTACTACCATGAGGCTATC+AGG - chr2_4:32272082-32272101 None:intergenic 45.0%
TATCTTCTGCTCCGAAAGGT+CGG + chr2_4:32272722-32272741 Msa0325320:CDS 45.0%
CTTGAAGCAATCCGACCTTT+CGG - chr2_4:32272736-32272755 None:intergenic 45.0%
ATGCTGAAAATGCTGCTCCA+AGG + chr2_4:32272758-32272777 Msa0325320:CDS 45.0%
TCTGCATGCACAAAGCAACA+TGG - chr2_4:32272858-32272877 None:intergenic 45.0%
!! TTTGTAATTAAAAAAAAAAA+AGG - chr2_4:32266796-32266815 None:intergenic 5.0%
!!! ATATTATATTCATTATTTTA+AGG - chr2_4:32267337-32267356 None:intergenic 5.0%
GAGCGTGTGCTGTGTATTGT+TGG - chr2_4:32266728-32266747 None:intergenic 50.0%
GATGAACGAACCTTTGGGTG+TGG - chr2_4:32266948-32266967 None:intergenic 50.0%
TTGAGGTGTGTCCGACACAT+TGG + chr2_4:32267395-32267414 Msa0325320:intron 50.0%
GGAGATCCTTGGTTCAAACG+CGG + chr2_4:32267615-32267634 Msa0325320:intron 50.0%
GAGATCCTTGGTTCAAACGC+GGG + chr2_4:32267616-32267635 Msa0325320:intron 50.0%
TTTGTCCCGCGTTTGAACCA+AGG - chr2_4:32267624-32267643 None:intergenic 50.0%
GGATTTCAAGCTATGGCTCG+AGG - chr2_4:32268713-32268732 None:intergenic 50.0%
GCACACCAAAAACCACCTAC+TGG - chr2_4:32268995-32269014 None:intergenic 50.0%
CACCAATCAAGCACGAGAGA+TGG + chr2_4:32269602-32269621 Msa0325320:intron 50.0%
ACCAGTGGCAAGGATGAACA+CGG - chr2_4:32269816-32269835 None:intergenic 50.0%
!! GAAGGGTGCCACTAAAGCAA+TGG + chr2_4:32270449-32270468 Msa0325320:CDS 50.0%
AAGTAAGCACCACCTTTGGG+TGG - chr2_4:32271223-32271242 None:intergenic 50.0%
!! ACTGAAGACGATAGTGGGTG+TGG + chr2_4:32271471-32271490 Msa0325320:intron 50.0%
! AGTGGGTGTGGTTTTTGCAC+TGG + chr2_4:32271483-32271502 Msa0325320:intron 50.0%
TGTTGTACTCAACCATGGCG+AGG + chr2_4:32271980-32271999 Msa0325320:intron 50.0%
TGGAGTGGATATTGCATCCC+AGG + chr2_4:32272460-32272479 Msa0325320:CDS 50.0%
CGAAAGGTCGGATTGCTTCA+AGG + chr2_4:32272734-32272753 Msa0325320:CDS 50.0%
GCATGCACAAAGCAACATGG+AGG - chr2_4:32272855-32272874 None:intergenic 50.0%
AGGAGAGACCTTTGGGCTTG+GGG - chr2_4:32266750-32266769 None:intergenic 55.0%
GAGGAGAGACCTTTGGGCTT+GGG - chr2_4:32266751-32266770 None:intergenic 55.0%
AGAGGAGAGACCTTTGGGCT+TGG - chr2_4:32266752-32266771 None:intergenic 55.0%
TCCTCAACTAGAGAGGGGGT+GGG - chr2_4:32268304-32268323 None:intergenic 55.0%
TTCCTCAACTAGAGAGGGGG+TGG - chr2_4:32268305-32268324 None:intergenic 55.0%
ACCGTGTTCATCCTTGCCAC+TGG + chr2_4:32269812-32269831 Msa0325320:intron 55.0%
AGGGAAGTCGTGCACAGATC+AGG + chr2_4:32270291-32270310 Msa0325320:CDS 55.0%
GGGAAGTCGTGCACAGATCA+GGG + chr2_4:32270292-32270311 Msa0325320:CDS 55.0%
GGAAGTCGTGCACAGATCAG+GGG + chr2_4:32270293-32270312 Msa0325320:CDS 55.0%
GGGTGTAGCAACTCACACAC+AGG + chr2_4:32270313-32270332 Msa0325320:CDS 55.0%
!! GGGTGCCACTAAAGCAATGG+TGG + chr2_4:32270452-32270471 Msa0325320:CDS 55.0%
TGGGGTTGCACCATGTGACT+AGG + chr2_4:32271778-32271797 Msa0325320:intron 55.0%
GGTTGCACCATGTGACTAGG+AGG + chr2_4:32271781-32271800 Msa0325320:intron 55.0%
CCTGTGACCTCCTAGTCACA+TGG - chr2_4:32271791-32271810 None:intergenic 55.0%
CCATGTGACTAGGAGGTCAC+AGG + chr2_4:32271788-32271807 Msa0325320:intron 55.0%
ATAAAGCTCTCGCCTCGCCA+TGG - chr2_4:32271995-32272014 None:intergenic 55.0%
CTACCATGAGGCTATCAGGC+AGG - chr2_4:32272078-32272097 None:intergenic 55.0%
ACCCACCCCCTCTCTAGTTG+AGG + chr2_4:32268300-32268319 Msa0325320:intron 60.0%
!! TCCTGGCTCGGCAGCTAGTT+AGG + chr2_4:32270243-32270262 Msa0325320:CDS 60.0%
ACCTAACTAGCTGCCGAGCC+AGG - chr2_4:32270247-32270266 None:intergenic 60.0%
!! GCAAATGGCACCGGCAAAGC+AGG + chr2_4:32270905-32270924 Msa0325320:intron 60.0%
GTGCCTGCCTGATAGCCTCA+TGG + chr2_4:32272072-32272091 Msa0325320:intron 60.0%
ACACCTTATGCAGGTGCCCG+CGG - chr2_4:32273245-32273264 None:intergenic 60.0%
CACACGCTCCCCAAGCCCAA+AGG + chr2_4:32266739-32266758 Msa0325320:five_prime_UTR 65.0%
!! CCTCCCTCCAAGGGCACTAG+CGG + chr2_4:32267782-32267801 Msa0325320:intron 65.0%
!! CTCCCTCCAAGGGCACTAGC+GGG + chr2_4:32267783-32267802 Msa0325320:intron 65.0%
!! TCCCTCCAAGGGCACTAGCG+GGG + chr2_4:32267784-32267803 Msa0325320:intron 65.0%
GTACCGCGGGCACCTGCATA+AGG + chr2_4:32273239-32273258 Msa0325320:three_prime_UTR 65.0%
CCGCTAGTGCCCTTGGAGGG+AGG - chr2_4:32267785-32267804 None:intergenic 70.0%
GCCCCGCTAGTGCCCTTGGA+GGG - chr2_4:32267788-32267807 None:intergenic 70.0%
AGCCCCGCTAGTGCCCTTGG+AGG - chr2_4:32267789-32267808 None:intergenic 70.0%
TCGAGCCCCGCTAGTGCCCT+TGG - chr2_4:32267792-32267811 None:intergenic 70.0%
GCACTAGCGGGGCTCGAACC+TGG + chr2_4:32267795-32267814 Msa0325320:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 32266714 32273355 32266714 ID=Msa0325320;Name=Msa0325320
chr2_4 mRNA 32266714 32273355 32266714 ID=Msa0325320-mRNA-1;Parent=Msa0325320;Name=Msa0325320-mRNA-1;_AED=0.15;_eAED=0.15;_QI=113|1|1|1|0.90|0.83|12|418|216
chr2_4 exon 32266714 32266760 32266714 ID=Msa0325320-mRNA-1:exon:10557;Parent=Msa0325320-mRNA-1
chr2_4 exon 32266857 32266956 32266857 ID=Msa0325320-mRNA-1:exon:10558;Parent=Msa0325320-mRNA-1
chr2_4 exon 32267088 32267132 32267088 ID=Msa0325320-mRNA-1:exon:10559;Parent=Msa0325320-mRNA-1
chr2_4 exon 32267988 32268022 32267988 ID=Msa0325320-mRNA-1:exon:10560;Parent=Msa0325320-mRNA-1
chr2_4 exon 32268110 32268160 32268110 ID=Msa0325320-mRNA-1:exon:10561;Parent=Msa0325320-mRNA-1
chr2_4 exon 32270230 32270334 32270230 ID=Msa0325320-mRNA-1:exon:10562;Parent=Msa0325320-mRNA-1
chr2_4 exon 32270414 32270485 32270414 ID=Msa0325320-mRNA-1:exon:10563;Parent=Msa0325320-mRNA-1
chr2_4 exon 32270906 32270977 32270906 ID=Msa0325320-mRNA-1:exon:10564;Parent=Msa0325320-mRNA-1
chr2_4 exon 32272265 32272345 32272265 ID=Msa0325320-mRNA-1:exon:10565;Parent=Msa0325320-mRNA-1
chr2_4 exon 32272446 32272481 32272446 ID=Msa0325320-mRNA-1:exon:10566;Parent=Msa0325320-mRNA-1
chr2_4 exon 32272721 32272779 32272721 ID=Msa0325320-mRNA-1:exon:10567;Parent=Msa0325320-mRNA-1
chr2_4 exon 32272877 32273355 32272877 ID=Msa0325320-mRNA-1:exon:10568;Parent=Msa0325320-mRNA-1
chr2_4 five_prime_UTR 32266714 32266760 32266714 ID=Msa0325320-mRNA-1:five_prime_utr;Parent=Msa0325320-mRNA-1
chr2_4 five_prime_UTR 32266857 32266922 32266857 ID=Msa0325320-mRNA-1:five_prime_utr;Parent=Msa0325320-mRNA-1
chr2_4 CDS 32266923 32266956 32266923 ID=Msa0325320-mRNA-1:cds;Parent=Msa0325320-mRNA-1
chr2_4 CDS 32267088 32267132 32267088 ID=Msa0325320-mRNA-1:cds;Parent=Msa0325320-mRNA-1
chr2_4 CDS 32267988 32268022 32267988 ID=Msa0325320-mRNA-1:cds;Parent=Msa0325320-mRNA-1
chr2_4 CDS 32268110 32268160 32268110 ID=Msa0325320-mRNA-1:cds;Parent=Msa0325320-mRNA-1
chr2_4 CDS 32270230 32270334 32270230 ID=Msa0325320-mRNA-1:cds;Parent=Msa0325320-mRNA-1
chr2_4 CDS 32270414 32270485 32270414 ID=Msa0325320-mRNA-1:cds;Parent=Msa0325320-mRNA-1
chr2_4 CDS 32270906 32270977 32270906 ID=Msa0325320-mRNA-1:cds;Parent=Msa0325320-mRNA-1
chr2_4 CDS 32272265 32272345 32272265 ID=Msa0325320-mRNA-1:cds;Parent=Msa0325320-mRNA-1
chr2_4 CDS 32272446 32272481 32272446 ID=Msa0325320-mRNA-1:cds;Parent=Msa0325320-mRNA-1
chr2_4 CDS 32272721 32272779 32272721 ID=Msa0325320-mRNA-1:cds;Parent=Msa0325320-mRNA-1
chr2_4 CDS 32272877 32272937 32272877 ID=Msa0325320-mRNA-1:cds;Parent=Msa0325320-mRNA-1
chr2_4 three_prime_UTR 32272938 32273355 32272938 ID=Msa0325320-mRNA-1:three_prime_utr;Parent=Msa0325320-mRNA-1
Gene Sequence

>Msa0325320

ATGAACATCTTCAAGAAGAAAACCACACCCAAAGAAGCTCTGCGACAAAGTAAAAGAGAAATGTCTGTTGCAACTAGAGGAATTGAAAGAGAGATAGCATCACTTCAGATGGAGGAAAAGAAGTTAGTGGCAGAGATTAAAAGAGAGGCAAAAACTGGAAATGAGGCTTCTACTAAAATCCTGGCTCGGCAGCTAGTTAGGTTACGCCAACAGATAACTAATCTGCAGGGAAGTCGTGCACAGATCAGGGGTGTAGCAACTCACACACAGGCATTATATGCAAGCACTTCAATCTCTACAGGGATGAAGGGTGCCACTAAAGCAATGGTGGCAATGAATAAGCAAATGGCACCGGCAAAGCAGGCTAAAGTGATTCAAGAATTCCAAAAGCAATCAGCACAACTGGACATGACGATTGAGATGATGTCAGAATCTATTGATGAAACTTTAGACAAAGATGAAGCTGAGGAAGAATCAGAAGAACTCACTAACCAGGTTCTTGATGAAATTGGAGTGGATATTGCATCCCAGTTATCTTCTGCTCCGAAAGGTCGGATTGCTTCAAGGAATGCTGAAAATGCTGCTCCAAGATCAGAATCCCAAGATGTTGAAGAACTTGAAAAGAGATTGGCTTCTCTTCGAAGAATATAA

Protein sequence

>Msa0325320

MNIFKKKTTPKEALRQSKREMSVATRGIEREIASLQMEEKKLVAEIKREAKTGNEASTKILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMKGATKAMVAMNKQMAPAKQAKVIQEFQKQSAQLDMTIEMMSESIDETLDKDEAEEESEELTNQVLDEIGVDIASQLSSAPKGRIASRNAENAAPRSESQDVEELEKRLASLRRI*