Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287200 | XP_003595581.1 | 97.817 | 504 | 10 | 1 | 1 | 503 | 362 | 865 | 0.0 | 1009 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287200 | sp|Q6ZI17|OML2_ORYSJ | 52.229 | 471 | 186 | 12 | 1 | 459 | 363 | 806 | 7.70e-138 | 421 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287200 | Q6J738 | 97.817 | 504 | 10 | 1 | 1 | 503 | 362 | 865 | 0.0 | 1009 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0248800 | Msa0287200 | 0.818748 | 1.667337e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287200 | MtrunA17_Chr2g0304041 | 97.817 | 504 | 10 | 1 | 1 | 503 | 362 | 865 | 0.0 | 1009 |
| Msa0287200 | MtrunA17_Chr3g0096561 | 56.846 | 482 | 187 | 10 | 1 | 475 | 364 | 831 | 1.35e-157 | 469 |
| Msa0287200 | MtrunA17_Chr3g0131631 | 43.943 | 421 | 156 | 16 | 66 | 458 | 546 | 914 | 2.25e-78 | 264 |
| Msa0287200 | MtrunA17_Chr8g0385721 | 42.623 | 427 | 194 | 11 | 75 | 458 | 504 | 922 | 6.12e-78 | 263 |
| Msa0287200 | MtrunA17_Chr7g0221461 | 75.796 | 157 | 37 | 1 | 304 | 460 | 628 | 783 | 3.74e-75 | 252 |
| Msa0287200 | MtrunA17_Chr7g0276291 | 76.923 | 91 | 21 | 0 | 369 | 459 | 5 | 95 | 1.42e-42 | 148 |
| Msa0287200 | MtrunA17_Chr3g0123391 | 41.148 | 209 | 98 | 7 | 286 | 479 | 288 | 486 | 6.36e-36 | 140 |
| Msa0287200 | MtrunA17_Chr4g0035711 | 38.889 | 126 | 63 | 2 | 338 | 449 | 188 | 313 | 1.24e-17 | 84.3 |
| Msa0287200 | MtrunA17_Chr7g0276301 | 60.345 | 58 | 22 | 1 | 305 | 362 | 515 | 571 | 6.33e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287200 | AT1G29400.1 | 52.314 | 497 | 195 | 15 | 1 | 489 | 334 | 796 | 3.36e-138 | 418 |
| Msa0287200 | AT1G29400.2 | 52.314 | 497 | 195 | 15 | 1 | 489 | 334 | 796 | 3.36e-138 | 418 |
| Msa0287200 | AT1G29400.3 | 52.314 | 497 | 195 | 15 | 1 | 489 | 334 | 796 | 3.36e-138 | 418 |
| Msa0287200 | AT5G61960.7 | 54.380 | 274 | 114 | 7 | 202 | 470 | 599 | 866 | 3.52e-79 | 265 |
| Msa0287200 | AT5G61960.4 | 54.380 | 274 | 114 | 7 | 202 | 470 | 599 | 866 | 3.52e-79 | 265 |
| Msa0287200 | AT5G61960.8 | 54.380 | 274 | 114 | 7 | 202 | 470 | 599 | 866 | 3.52e-79 | 265 |
| Msa0287200 | AT5G61960.11 | 54.380 | 274 | 114 | 7 | 202 | 470 | 599 | 866 | 3.52e-79 | 265 |
| Msa0287200 | AT5G61960.6 | 54.380 | 274 | 114 | 7 | 202 | 470 | 599 | 866 | 3.52e-79 | 265 |
| Msa0287200 | AT5G61960.9 | 54.380 | 274 | 114 | 7 | 202 | 470 | 599 | 866 | 3.52e-79 | 265 |
| Msa0287200 | AT5G61960.5 | 54.380 | 274 | 114 | 7 | 202 | 470 | 599 | 866 | 3.52e-79 | 265 |
| Msa0287200 | AT5G61960.3 | 54.380 | 274 | 114 | 7 | 202 | 470 | 606 | 873 | 3.87e-79 | 265 |
| Msa0287200 | AT5G61960.1 | 54.380 | 274 | 114 | 7 | 202 | 470 | 606 | 873 | 3.87e-79 | 265 |
| Msa0287200 | AT5G61960.10 | 54.380 | 274 | 114 | 7 | 202 | 470 | 606 | 873 | 3.87e-79 | 265 |
| Msa0287200 | AT5G61960.2 | 54.380 | 274 | 114 | 7 | 202 | 470 | 606 | 873 | 3.87e-79 | 265 |
| Msa0287200 | AT5G07290.1 | 54.317 | 278 | 109 | 9 | 202 | 470 | 603 | 871 | 5.18e-76 | 257 |
| Msa0287200 | AT2G42890.1 | 39.829 | 467 | 235 | 15 | 6 | 459 | 369 | 802 | 1.46e-75 | 254 |
| Msa0287200 | AT2G42890.3 | 39.829 | 467 | 235 | 15 | 6 | 459 | 356 | 789 | 1.54e-75 | 254 |
| Msa0287200 | AT2G42890.2 | 39.829 | 467 | 235 | 15 | 6 | 459 | 356 | 789 | 1.54e-75 | 254 |
| Msa0287200 | AT3G26120.1 | 45.033 | 151 | 61 | 3 | 332 | 460 | 402 | 552 | 5.91e-33 | 132 |
| Msa0287200 | AT1G67770.1 | 43.836 | 146 | 63 | 4 | 323 | 449 | 320 | 465 | 1.82e-28 | 119 |
| Msa0287200 | AT5G07930.1 | 36.000 | 125 | 66 | 2 | 329 | 440 | 126 | 249 | 2.82e-18 | 85.5 |
| Msa0287200 | AT5G07930.3 | 36.000 | 125 | 66 | 2 | 329 | 440 | 126 | 249 | 3.44e-18 | 85.5 |
| Msa0287200 | AT1G37140.1 | 36.975 | 119 | 69 | 2 | 337 | 449 | 83 | 201 | 7.15e-17 | 80.5 |
| Msa0287200 | AT5G07930.2 | 35.780 | 109 | 57 | 1 | 329 | 424 | 126 | 234 | 3.87e-16 | 79.0 |
Find 138 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATCTGCCAATTGACTTTA+AGG | 0.012034 | 2_3:-29244324 | Msa0287200:intron |
| CATAATCGTTCATACTTATT+TGG | 0.059545 | 2_3:+29244509 | None:intergenic |
| CGTTCATCAAACTTGAATTT+TGG | 0.116811 | 2_3:+29243856 | None:intergenic |
| GAGTAGTTAGTTTGAGGTTC+AGG | 0.166341 | 2_3:-29243081 | Msa0287200:three_prime_UTR |
| GGTTGTTGGGCTCATTATTT+TGG | 0.173697 | 2_3:+29245387 | None:intergenic |
| CCACGATATGAACTAAATTT+TGG | 0.174471 | 2_3:+29245196 | None:intergenic |
| ATGCTTAATAGTGGCATTTC+TGG | 0.196189 | 2_3:-29244803 | Msa0287200:CDS |
| TCTTCTCATATAAGGTTAAT+TGG | 0.216277 | 2_3:+29243296 | None:intergenic |
| TGACCGCTCCACAGTTTCTA+TGG | 0.234954 | 2_3:-29245120 | Msa0287200:CDS |
| CCATTGTCAGGCATATTTCT+TGG | 0.278917 | 2_3:+29244761 | None:intergenic |
| GCCAGCAAGCTTCAAAAGTT+TGG | 0.283525 | 2_3:-29243224 | Msa0287200:three_prime_UTR |
| CATGTCGGTTCTGCTCCTTC+AGG | 0.305218 | 2_3:-29244935 | Msa0287200:CDS |
| AAGACTTTCTGATACATTAG+AGG | 0.307583 | 2_3:+29242990 | None:intergenic |
| TTGGCATCCAAACTCATAAA+AGG | 0.321386 | 2_3:+29243315 | None:intergenic |
| GTTGGCTCTGAGGATAAGTT+TGG | 0.323282 | 2_3:+29245091 | None:intergenic |
| TTGAAGCTAATCCCGGTAAA+TGG | 0.327238 | 2_3:+29245359 | None:intergenic |
| TTCAAAAGTTTGGTGCATTT+CGG | 0.336040 | 2_3:-29243214 | Msa0287200:three_prime_UTR |
| ATAATCGTTCATACTTATTT+GGG | 0.341516 | 2_3:+29244510 | None:intergenic |
| ACTCTACATCTTCTCATATA+AGG | 0.345203 | 2_3:+29243288 | None:intergenic |
| AACAACCAGCAACCATTTAC+CGG | 0.366832 | 2_3:-29245371 | Msa0287200:CDS |
| CGTGGAGCTTTGTCCTCGTT+TGG | 0.379349 | 2_3:-29245178 | Msa0287200:CDS |
| AGTAGTTAGTTTGAGGTTCA+GGG | 0.384460 | 2_3:-29243080 | Msa0287200:three_prime_UTR |
| CCCAATAAAATTTCATCCGC+TGG | 0.388114 | 2_3:-29245250 | Msa0287200:CDS |
| TTTGGTGCATCAACCTCAAA+TGG | 0.391564 | 2_3:-29245160 | Msa0287200:CDS |
| GGTAAATGGTTGCTGGTTGT+TGG | 0.394322 | 2_3:+29245373 | None:intergenic |
| CTCCAACAATATGTATATTC+AGG | 0.394698 | 2_3:-29243397 | Msa0287200:CDS |
| ATGAATAATGTTGGCTATAG+AGG | 0.396394 | 2_3:-29244857 | Msa0287200:CDS |
| TTTAGAGAGTAGTTAGTTTG+AGG | 0.398427 | 2_3:-29243087 | Msa0287200:three_prime_UTR |
| AGCTCGACTTAGATAAGATT+AGG | 0.403572 | 2_3:-29244574 | Msa0287200:CDS |
| TTACGAGGGCATTCTTCCCT+TGG | 0.405207 | 2_3:+29243886 | None:intergenic |
| CTGACCGTGTTAGGAGTAGA+TGG | 0.410461 | 2_3:-29244640 | Msa0287200:CDS |
| GTCAATGAACTCTGCTCAAT+AGG | 0.410542 | 2_3:+29245433 | None:intergenic |
| AATATACATATTGTTGGAGT+TGG | 0.413694 | 2_3:+29243401 | None:intergenic |
| CTCATAAAAGGACCATCCTT+TGG | 0.414491 | 2_3:+29243327 | None:intergenic |
| CAATGAAGTTTCAGATGACT+TGG | 0.417748 | 2_3:+29244880 | None:intergenic |
| TGGTTCTGAAGCTGCTGATC+AGG | 0.418008 | 2_3:-29243796 | Msa0287200:intron |
| GGCTATAGAGGCATGGGTCT+AGG | 0.420604 | 2_3:-29244845 | Msa0287200:CDS |
| ACAGTGAAGGCCGCAACTAT+TGG | 0.421095 | 2_3:-29245313 | Msa0287200:CDS |
| GGTCAAGCTCTTGATTCAGT+TGG | 0.423960 | 2_3:+29245680 | None:intergenic |
| GTAAATGGTTGCTGGTTGTT+GGG | 0.425050 | 2_3:+29245374 | None:intergenic |
| TGCCTGAATATACATATTGT+TGG | 0.425212 | 2_3:+29243395 | None:intergenic |
| GACCAAGCTGAAGGTTTGGT+TGG | 0.428996 | 2_3:+29245073 | None:intergenic |
| CCTTGACCAAGCTGAAGGTT+TGG | 0.429115 | 2_3:+29245069 | None:intergenic |
| CCTCTAGCCGGCTCTCCGCC+AGG | 0.437341 | 2_3:-29245619 | Msa0287200:intron |
| TTAGGTAATGGTCCTTATCC+AGG | 0.439673 | 2_3:-29244692 | Msa0287200:CDS |
| TAATCCCGGTAAATGGTTGC+TGG | 0.441185 | 2_3:+29245366 | None:intergenic |
| CATCAACTTAGTACATCAAA+TGG | 0.443912 | 2_3:-29245034 | Msa0287200:CDS |
| ACATATACCTTAAAGTCAAT+TGG | 0.450514 | 2_3:+29244317 | None:intergenic |
| GGAAATTACATGCTTAATAG+TGG | 0.451447 | 2_3:-29244812 | Msa0287200:CDS |
| CCATCTGAGTGGAAGACAAT+AGG | 0.454748 | 2_3:+29243816 | None:intergenic |
| GACTACTCCTTCCTATGTCC+TGG | 0.458892 | 2_3:+29245290 | None:intergenic |
| ATAGCTTCTTGTTGTCAACT+TGG | 0.466998 | 2_3:+29244600 | None:intergenic |
| AAGTTTGATGAACCATTGTC+AGG | 0.471153 | 2_3:+29244749 | None:intergenic |
| GACCGCTCCACAGTTTCTAT+GGG | 0.479354 | 2_3:-29245119 | Msa0287200:CDS |
| ATACATATTGTTGGAGTTGG+AGG | 0.481683 | 2_3:+29243404 | None:intergenic |
| GAACCAACCTGGCGGAGAGC+CGG | 0.482139 | 2_3:+29245612 | None:intergenic |
| TCTGGCTACTTTCCAAAGGA+TGG | 0.483392 | 2_3:-29243339 | Msa0287200:CDS |
| CTCATACAAACCTCGTAGAA+TGG | 0.484056 | 2_3:+29244133 | None:intergenic |
| AGCTTGGTCAAGGCCATCTG+TGG | 0.486302 | 2_3:-29245059 | Msa0287200:CDS |
| TAAGTATAGAAGATCTCATT+CGG | 0.490458 | 2_3:+29244726 | None:intergenic |
| TGCAAAATTGAAGCTAATCC+CGG | 0.501056 | 2_3:+29245352 | None:intergenic |
| AAACCGAAGTGCCTTTCAAA+AGG | 0.501561 | 2_3:+29244908 | None:intergenic |
| GTAGGTAGTAGTCCTGGATA+AGG | 0.503433 | 2_3:+29244680 | None:intergenic |
| TTCCACTGACGACCCATTTG+AGG | 0.503882 | 2_3:+29245147 | None:intergenic |
| TTGGCGTATGCTCGAATCCA+AGG | 0.504323 | 2_3:-29243903 | Msa0287200:CDS |
| ACAAATATAAATCATTCTCC+TGG | 0.504505 | 2_3:-29245412 | Msa0287200:CDS |
| ACTTCTCCCACTTCTTCCCA+TGG | 0.512338 | 2_3:+29243949 | None:intergenic |
| GCAACTATTGGCCAGGACAT+AGG | 0.512697 | 2_3:-29245301 | Msa0287200:CDS |
| TGGCAGATAGAGAAAATCAT+AGG | 0.514203 | 2_3:+29244337 | None:intergenic |
| TACATATTGTTGGAGTTGGA+GGG | 0.514427 | 2_3:+29243405 | None:intergenic |
| GCTATAGAGGCATGGGTCTA+GGG | 0.516065 | 2_3:-29244844 | Msa0287200:CDS |
| GAATTGTTCTGACTTGAGTA+CGG | 0.516495 | 2_3:+29244995 | None:intergenic |
| GACATAGGAAGGAGTAGTCA+TGG | 0.517179 | 2_3:-29245286 | Msa0287200:CDS |
| AATTGTTCTGACTTGAGTAC+GGG | 0.520148 | 2_3:+29244996 | None:intergenic |
| AGTGGCATTTCTGGTAATGT+TGG | 0.527380 | 2_3:-29244794 | Msa0287200:CDS |
| GAAGGCCGCAACTATTGGCC+AGG | 0.527459 | 2_3:-29245308 | Msa0287200:CDS |
| AATGAAGTTTCAGATGACTT+GGG | 0.527669 | 2_3:+29244881 | None:intergenic |
| TAGAAACTGTGGAGCGGTCA+AGG | 0.528238 | 2_3:+29245123 | None:intergenic |
| GAAAACTTCGAGACTCATCT+TGG | 0.529593 | 2_3:+29245659 | None:intergenic |
| TTACAATTAAGCGATTCCTC+TGG | 0.532232 | 2_3:-29243357 | Msa0287200:CDS |
| CCTATTGTCTTCCACTCAGA+TGG | 0.534767 | 2_3:-29243816 | Msa0287200:CDS |
| GTAATTTGAATGTCAATATG+TGG | 0.536753 | 2_3:-29243110 | Msa0287200:three_prime_UTR |
| AATGTTGGCTATAGAGGCAT+GGG | 0.547025 | 2_3:-29244851 | Msa0287200:CDS |
| ATAGCAGTAGGTAGTAGTCC+TGG | 0.548685 | 2_3:+29244674 | None:intergenic |
| ACATATTGTTGGAGTTGGAG+GGG | 0.558653 | 2_3:+29243406 | None:intergenic |
| GTTAGTTTGAGGTTCAGGGT+TGG | 0.559690 | 2_3:-29243076 | Msa0287200:three_prime_UTR |
| TAATGTTGGCTATAGAGGCA+TGG | 0.560617 | 2_3:-29244852 | Msa0287200:CDS |
| ATGAAGTTTCAGATGACTTG+GGG | 0.561315 | 2_3:+29244882 | None:intergenic |
| AGACATTCCATGGGAAGAAG+TGG | 0.561680 | 2_3:-29243956 | Msa0287200:CDS |
| GATGTAGAGTTGCTAACAGA+AGG | 0.561738 | 2_3:-29243275 | Msa0287200:three_prime_UTR |
| CAGGTGGGAGCAAAAGCTGA+TGG | 0.564439 | 2_3:-29243178 | Msa0287200:three_prime_UTR |
| TTCCTCTGGCTACTTTCCAA+AGG | 0.571135 | 2_3:-29243343 | Msa0287200:CDS |
| AGCCAACCAAACCTTCAGCT+TGG | 0.571354 | 2_3:-29245075 | Msa0287200:CDS |
| CCAAAATTTAGTTCATATCG+TGG | 0.572272 | 2_3:-29245196 | Msa0287200:CDS |
| ACTTCATTGATGAATAATGT+TGG | 0.575278 | 2_3:-29244866 | Msa0287200:CDS |
| TTGGTGCATCAACCTCAAAT+GGG | 0.575610 | 2_3:-29245159 | Msa0287200:CDS |
| AGGACTACTACCTACTGCTA+TGG | 0.577598 | 2_3:-29244672 | Msa0287200:CDS |
| ACAACCAGCAACCATTTACC+GGG | 0.579683 | 2_3:-29245370 | Msa0287200:CDS |
| ATGGGTCTAGGGCACAATGA+TGG | 0.580869 | 2_3:-29244833 | Msa0287200:CDS |
| TGAAGGTTTGGTTGGCTCTG+AGG | 0.581671 | 2_3:+29245081 | None:intergenic |
| GATGGCCTTGACCAAGCTGA+AGG | 0.583358 | 2_3:+29245064 | None:intergenic |
| TTAGGAGTGGTGAAGATACA+AGG | 0.586418 | 2_3:-29244556 | Msa0287200:CDS |
| AACCTCAAATGGGTCGTCAG+TGG | 0.586729 | 2_3:-29245149 | Msa0287200:CDS |
| CCAAACCTTCAGCTTGGTCA+AGG | 0.591925 | 2_3:-29245069 | Msa0287200:CDS |
| CTTTCAAAAGGCAAACCTGA+AGG | 0.593340 | 2_3:+29244920 | None:intergenic |
| CAAGTGGGTTCACCTCTAGC+CGG | 0.595642 | 2_3:-29245631 | Msa0287200:CDS |
| TAGAATGGAATAATAAGTGA+TGG | 0.596556 | 2_3:+29244148 | None:intergenic |
| CTAAGTTGATGTCCCACAGA+TGG | 0.596948 | 2_3:+29245046 | None:intergenic |
| CCTGGCGGAGAGCCGGCTAG+AGG | 0.597475 | 2_3:+29245619 | None:intergenic |
| GTAAAACTCTCCATAGCAGT+AGG | 0.602877 | 2_3:+29244662 | None:intergenic |
| AGGTGGGAGCAAAAGCTGAT+GGG | 0.604869 | 2_3:-29243177 | Msa0287200:three_prime_UTR |
| AGGGTTGGTAAGACTACATG+AGG | 0.612126 | 2_3:-29243061 | Msa0287200:three_prime_UTR |
| TGCCATTGATGAAAATCACA+AGG | 0.615124 | 2_3:-29244363 | Msa0287200:CDS |
| GACATTCCATGGGAAGAAGT+GGG | 0.618165 | 2_3:-29243955 | Msa0287200:CDS |
| GGACTTCCCCATAGAAACTG+TGG | 0.618606 | 2_3:+29245112 | None:intergenic |
| CTGCTGAGATGAACTGACAA+AGG | 0.619330 | 2_3:+29244973 | None:intergenic |
| CCAAGAAATATGCCTGACAA+TGG | 0.622245 | 2_3:-29244761 | Msa0287200:CDS |
| CGATCCATCTACTCCTAACA+CGG | 0.628297 | 2_3:+29244636 | None:intergenic |
| TGGCGTATGCTCGAATCCAA+GGG | 0.629165 | 2_3:-29243902 | Msa0287200:CDS |
| GCTTGGTCAAGGCCATCTGT+GGG | 0.630534 | 2_3:-29245058 | Msa0287200:CDS |
| CTATTGGCCAGGACATAGGA+AGG | 0.630779 | 2_3:-29245297 | Msa0287200:CDS |
| TGAGGTTGATGCACCAAACG+AGG | 0.632584 | 2_3:+29245165 | None:intergenic |
| GACTTAGATAAGATTAGGAG+TGG | 0.634677 | 2_3:-29244569 | Msa0287200:CDS |
| AGTAGATGGATCGACAACAA+TGG | 0.640609 | 2_3:-29244626 | Msa0287200:CDS |
| TTGCAGAATAAATGCAACGT+CGG | 0.645819 | 2_3:-29244196 | Msa0287200:intron |
| TTCACTGTGTTCGACAACTG+TGG | 0.653764 | 2_3:+29245328 | None:intergenic |
| TGAGTTGAAATTAGATCCAG+CGG | 0.653954 | 2_3:+29245234 | None:intergenic |
| ACAGTTGTCGAACACAGTGA+AGG | 0.664160 | 2_3:-29245326 | Msa0287200:CDS |
| ACCGCTCCACAGTTTCTATG+GGG | 0.675690 | 2_3:-29245118 | Msa0287200:CDS |
| CTGAGTGGAAGACAATAGGT+CGG | 0.676153 | 2_3:+29243820 | None:intergenic |
| TATGTCCTGGCCAATAGTTG+CGG | 0.676299 | 2_3:+29245303 | None:intergenic |
| GGGTTGGTAAGACTACATGA+GGG | 0.691910 | 2_3:-29243060 | Msa0287200:three_prime_UTR |
| CAGCTTCAGAACCATCTGAG+TGG | 0.694749 | 2_3:+29243805 | None:intergenic |
| TCCCCATAGAAACTGTGGAG+CGG | 0.698213 | 2_3:+29245117 | None:intergenic |
| GCCATTGATGAAAATCACAA+GGG | 0.699488 | 2_3:-29244362 | Msa0287200:CDS |
| ATCCTTTGGAAAGTAGCCAG+AGG | 0.701334 | 2_3:+29243341 | None:intergenic |
| ACTTATTATTCCATTCTACG+AGG | 0.712441 | 2_3:-29244143 | Msa0287200:intron |
| GGTTGGTAAGACTACATGAG+GGG | 0.739690 | 2_3:-29243059 | Msa0287200:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTAAAATTTTCATAAC+AGG | - | chr2_3:29243145-29243164 | Msa0287200:three_prime_UTR | 10.0% |
| !!! | TCTTATTAAATTTTATTTTG+CGG | - | chr2_3:29244548-29244567 | Msa0287200:CDS | 10.0% |
| !! | TGAACAATTAATAAATATCT+CGG | + | chr2_3:29244205-29244224 | None:intergenic | 15.0% |
| !!! | AAATTTTCATAACAGGTAAT+TGG | - | chr2_3:29243152-29243171 | Msa0287200:three_prime_UTR | 20.0% |
| !!! | AAATTTTATTGGGAAATATG+TGG | + | chr2_3:29243366-29243385 | None:intergenic | 20.0% |
| !! | ATAATCGTTCATACTTATTT+GGG | + | chr2_3:29244116-29244135 | None:intergenic | 20.0% |
| !! | GAACAATTAATAAATATCTC+GGG | + | chr2_3:29244204-29244223 | None:intergenic | 20.0% |
| !! | GATATCAAGGAAATTTATTA+AGG | - | chr2_3:29244579-29244598 | Msa0287200:CDS | 20.0% |
| ! | ATCAAAGATAAAAATGCAAG+AGG | + | chr2_3:29243117-29243136 | None:intergenic | 25.0% |
| !! | TCTTGCATTTTTATCTTTGA+TGG | - | chr2_3:29243116-29243135 | Msa0287200:three_prime_UTR | 25.0% |
| ! | ACAAATATAAATCATTCTCC+TGG | - | chr2_3:29243211-29243230 | Msa0287200:three_prime_UTR | 25.0% |
| ! | ACTTCATTGATGAATAATGT+TGG | - | chr2_3:29243757-29243776 | Msa0287200:intron | 25.0% |
| ! | TAAGTATAGAAGATCTCATT+CGG | + | chr2_3:29243900-29243919 | None:intergenic | 25.0% |
| ! | CATAATCGTTCATACTTATT+TGG | + | chr2_3:29244117-29244136 | None:intergenic | 25.0% |
| ! | ACATATACCTTAAAGTCAAT+TGG | + | chr2_3:29244309-29244328 | None:intergenic | 25.0% |
| ! | TAGAATGGAATAATAAGTGA+TGG | + | chr2_3:29244478-29244497 | None:intergenic | 25.0% |
| !! | GGTTTGTATGAGAATATTTT+TGG | - | chr2_3:29244501-29244520 | Msa0287200:intron | 25.0% |
| !!! | TCAAACTTGAATTTTGGAAA+TGG | + | chr2_3:29244764-29244783 | None:intergenic | 25.0% |
| ! | AATATACATATTGTTGGAGT+TGG | + | chr2_3:29245225-29245244 | None:intergenic | 25.0% |
| ! | TCTTCTCATATAAGGTTAAT+TGG | + | chr2_3:29245330-29245349 | None:intergenic | 25.0% |
| ! | GTAATTTGAATGTCAATATG+TGG | - | chr2_3:29245513-29245532 | Msa0287200:intron | 25.0% |
| !!! | TATGAACTAAATTTTGGCTC+TGG | + | chr2_3:29243424-29243443 | None:intergenic | 30.0% |
| ! | CCACGATATGAACTAAATTT+TGG | + | chr2_3:29243430-29243449 | None:intergenic | 30.0% |
| ! | CCAAAATTTAGTTCATATCG+TGG | - | chr2_3:29243427-29243446 | Msa0287200:intron | 30.0% |
| CATCAACTTAGTACATCAAA+TGG | - | chr2_3:29243589-29243608 | Msa0287200:intron | 30.0% | |
| AATGAAGTTTCAGATGACTT+GGG | + | chr2_3:29243745-29243764 | None:intergenic | 30.0% | |
| ! | ATGAATAATGTTGGCTATAG+AGG | - | chr2_3:29243766-29243785 | Msa0287200:intron | 30.0% |
| GGAAATTACATGCTTAATAG+TGG | - | chr2_3:29243811-29243830 | Msa0287200:CDS | 30.0% | |
| ! | ATACTTAGCCCTGTATTTTT+AGG | - | chr2_3:29243913-29243932 | Msa0287200:CDS | 30.0% |
| GACCATTACCTAAAAATACA+GGG | + | chr2_3:29243924-29243943 | None:intergenic | 30.0% | |
| ATAGCAAATTGCAAGAATTC+GGG | + | chr2_3:29244386-29244405 | None:intergenic | 30.0% | |
| CATAGCAAATTGCAAGAATT+CGG | + | chr2_3:29244387-29244406 | None:intergenic | 30.0% | |
| TGCATTTATTCTGCAATTGA+GGG | + | chr2_3:29244423-29244442 | None:intergenic | 30.0% | |
| TTGCATTTATTCTGCAATTG+AGG | + | chr2_3:29244424-29244443 | None:intergenic | 30.0% | |
| ACTTATTATTCCATTCTACG+AGG | - | chr2_3:29244480-29244499 | Msa0287200:intron | 30.0% | |
| ! | GAAAAGGTTAATTTTTCCTC+AGG | - | chr2_3:29244614-29244633 | Msa0287200:CDS | 30.0% |
| GACGAATTCATTGATATGTT+TGG | - | chr2_3:29244638-29244657 | Msa0287200:CDS | 30.0% | |
| TAGTGAAAAAGTTGCTTCTT+TGG | - | chr2_3:29244701-29244720 | Msa0287200:CDS | 30.0% | |
| !! | ATTTTGGAAATGGTTTACGA+GGG | + | chr2_3:29244754-29244773 | None:intergenic | 30.0% |
| !! | AATTTTGGAAATGGTTTACG+AGG | + | chr2_3:29244755-29244774 | None:intergenic | 30.0% |
| ! | CGTTCATCAAACTTGAATTT+TGG | + | chr2_3:29244770-29244789 | None:intergenic | 30.0% |
| CTTCTCTGGTAATTGATATT+TGG | - | chr2_3:29244903-29244922 | Msa0287200:CDS | 30.0% | |
| ! | TGGTAATTGATATTTGGAAC+TGG | - | chr2_3:29244909-29244928 | Msa0287200:CDS | 30.0% |
| ! | TGATATTTGGAACTGGTATT+TGG | - | chr2_3:29244916-29244935 | Msa0287200:CDS | 30.0% |
| !! | TTTTCGTAGTATTTGTTGCT+AGG | - | chr2_3:29244952-29244971 | Msa0287200:CDS | 30.0% |
| AAGTATGGATGAAGACAATT+AGG | + | chr2_3:29245172-29245191 | None:intergenic | 30.0% | |
| CTCCAACAATATGTATATTC+AGG | - | chr2_3:29245226-29245245 | Msa0287200:CDS | 30.0% | |
| TGCCTGAATATACATATTGT+TGG | + | chr2_3:29245231-29245250 | None:intergenic | 30.0% | |
| ACTCTACATCTTCTCATATA+AGG | + | chr2_3:29245338-29245357 | None:intergenic | 30.0% | |
| !! | TTCAAAAGTTTGGTGCATTT+CGG | - | chr2_3:29245409-29245428 | Msa0287200:CDS | 30.0% |
| ! | TCTTCAGTTTTGCTCATTTT+TGG | - | chr2_3:29245482-29245501 | Msa0287200:intron | 30.0% |
| !! | CTTCAGTTTTGCTCATTTTT+GGG | - | chr2_3:29245483-29245502 | Msa0287200:intron | 30.0% |
| ! | TTTAGAGAGTAGTTAGTTTG+AGG | - | chr2_3:29245536-29245555 | Msa0287200:intron | 30.0% |
| AAGACTTTCTGATACATTAG+AGG | + | chr2_3:29245636-29245655 | None:intergenic | 30.0% | |
| ! | TCGAAGTTTTCGATATCAAG+TGG | - | chr2_3:29242976-29242995 | Msa0287200:three_prime_UTR | 35.0% |
| ! | CGAAGTTTTCGATATCAAGT+GGG | - | chr2_3:29242977-29242996 | Msa0287200:three_prime_UTR | 35.0% |
| ! | ATGCTACTTCATGATGACAA+TGG | + | chr2_3:29243062-29243081 | None:intergenic | 35.0% |
| TGCAAAATTGAAGCTAATCC+CGG | + | chr2_3:29243274-29243293 | None:intergenic | 35.0% | |
| ! | CCAGCGGATGAAATTTTATT+GGG | + | chr2_3:29243376-29243395 | None:intergenic | 35.0% |
| ! | TCCAGCGGATGAAATTTTAT+TGG | + | chr2_3:29243377-29243396 | None:intergenic | 35.0% |
| ! | TGAGTTGAAATTAGATCCAG+CGG | + | chr2_3:29243392-29243411 | None:intergenic | 35.0% |
| ! | AATTGTTCTGACTTGAGTAC+GGG | + | chr2_3:29243630-29243649 | None:intergenic | 35.0% |
| ! | GAATTGTTCTGACTTGAGTA+CGG | + | chr2_3:29243631-29243650 | None:intergenic | 35.0% |
| CAACATCATCATCATCATGT+CGG | - | chr2_3:29243673-29243692 | Msa0287200:intron | 35.0% | |
| ATGAAGTTTCAGATGACTTG+GGG | + | chr2_3:29243744-29243763 | None:intergenic | 35.0% | |
| CAATGAAGTTTCAGATGACT+TGG | + | chr2_3:29243746-29243765 | None:intergenic | 35.0% | |
| ATGCTTAATAGTGGCATTTC+TGG | - | chr2_3:29243820-29243839 | Msa0287200:CDS | 35.0% | |
| AAGTTTGATGAACCATTGTC+AGG | + | chr2_3:29243877-29243896 | None:intergenic | 35.0% | |
| !!! | AGCCCTGTATTTTTAGGTAA+TGG | - | chr2_3:29243919-29243938 | Msa0287200:CDS | 35.0% |
| GGACCATTACCTAAAAATAC+AGG | + | chr2_3:29243925-29243944 | None:intergenic | 35.0% | |
| ! | ATAGCTTCTTGTTGTCAACT+TGG | + | chr2_3:29244026-29244045 | None:intergenic | 35.0% |
| AGCTCGACTTAGATAAGATT+AGG | - | chr2_3:29244049-29244068 | Msa0287200:intron | 35.0% | |
| GACTTAGATAAGATTAGGAG+TGG | - | chr2_3:29244054-29244073 | Msa0287200:intron | 35.0% | |
| ! | CATTTTTGATGTGTATCTGC+AGG | + | chr2_3:29244232-29244251 | None:intergenic | 35.0% |
| TGCCATTGATGAAAATCACA+AGG | - | chr2_3:29244260-29244279 | Msa0287200:intron | 35.0% | |
| GCCATTGATGAAAATCACAA+GGG | - | chr2_3:29244261-29244280 | Msa0287200:intron | 35.0% | |
| TGGCAGATAGAGAAAATCAT+AGG | + | chr2_3:29244289-29244308 | None:intergenic | 35.0% | |
| ! | CTATCTGCCAATTGACTTTA+AGG | - | chr2_3:29244299-29244318 | Msa0287200:intron | 35.0% |
| TAGCAAATTGCAAGAATTCG+GGG | + | chr2_3:29244385-29244404 | None:intergenic | 35.0% | |
| TTTATTCTGCAATTGAGGGA+GGG | + | chr2_3:29244419-29244438 | None:intergenic | 35.0% | |
| ATTTATTCTGCAATTGAGGG+AGG | + | chr2_3:29244420-29244439 | None:intergenic | 35.0% | |
| TTGCAGAATAAATGCAACGT+CGG | - | chr2_3:29244427-29244446 | Msa0287200:intron | 35.0% | |
| AAACTTTGTCTGTTCTTCTC+TGG | - | chr2_3:29244889-29244908 | Msa0287200:CDS | 35.0% | |
| GTATGATCTGCAAGAAAGTA+TGG | + | chr2_3:29245187-29245206 | None:intergenic | 35.0% | |
| TACATATTGTTGGAGTTGGA+GGG | + | chr2_3:29245221-29245240 | None:intergenic | 35.0% | |
| ATACATATTGTTGGAGTTGG+AGG | + | chr2_3:29245222-29245241 | None:intergenic | 35.0% | |
| TTACAATTAAGCGATTCCTC+TGG | - | chr2_3:29245266-29245285 | Msa0287200:CDS | 35.0% | |
| TTGGCATCCAAACTCATAAA+AGG | + | chr2_3:29245311-29245330 | None:intergenic | 35.0% | |
| ! | AGTAGTTAGTTTGAGGTTCA+GGG | - | chr2_3:29245543-29245562 | Msa0287200:intron | 35.0% |
| GAAAACTTCGAGACTCATCT+TGG | + | chr2_3:29242967-29242986 | None:intergenic | 40.0% | |
| TTCATGATGACAATGGCACA+GGG | + | chr2_3:29243055-29243074 | None:intergenic | 40.0% | |
| GTCAATGAACTCTGCTCAAT+AGG | + | chr2_3:29243193-29243212 | None:intergenic | 40.0% | |
| ! | GGTTGTTGGGCTCATTATTT+TGG | + | chr2_3:29243239-29243258 | None:intergenic | 40.0% |
| ! | GTAAATGGTTGCTGGTTGTT+GGG | + | chr2_3:29243252-29243271 | None:intergenic | 40.0% |
| AACAACCAGCAACCATTTAC+CGG | - | chr2_3:29243252-29243271 | Msa0287200:three_prime_UTR | 40.0% | |
| TTGAAGCTAATCCCGGTAAA+TGG | + | chr2_3:29243267-29243286 | None:intergenic | 40.0% | |
| CCCAATAAAATTTCATCCGC+TGG | - | chr2_3:29243373-29243392 | Msa0287200:CDS | 40.0% | |
| ! | TTTGGTGCATCAACCTCAAA+TGG | - | chr2_3:29243463-29243482 | Msa0287200:intron | 40.0% |
| TTGGTGCATCAACCTCAAAT+GGG | - | chr2_3:29243464-29243483 | Msa0287200:intron | 40.0% | |
| CTTTCAAAAGGCAAACCTGA+AGG | + | chr2_3:29243706-29243725 | None:intergenic | 40.0% | |
| !! | CTTCAGGTTTGCCTTTTGAA+AGG | - | chr2_3:29243704-29243723 | Msa0287200:intron | 40.0% |
| !!! | TTGCCTTTTGAAAGGCACTT+CGG | - | chr2_3:29243712-29243731 | Msa0287200:intron | 40.0% |
| ! | AAACCGAAGTGCCTTTCAAA+AGG | + | chr2_3:29243718-29243737 | None:intergenic | 40.0% |
| ! | TAATGTTGGCTATAGAGGCA+TGG | - | chr2_3:29243771-29243790 | Msa0287200:intron | 40.0% |
| ! | AATGTTGGCTATAGAGGCAT+GGG | - | chr2_3:29243772-29243791 | Msa0287200:intron | 40.0% |
| !! | AGTGGCATTTCTGGTAATGT+TGG | - | chr2_3:29243829-29243848 | Msa0287200:CDS | 40.0% |
| CCATTGTCAGGCATATTTCT+TGG | + | chr2_3:29243865-29243884 | None:intergenic | 40.0% | |
| CCAAGAAATATGCCTGACAA+TGG | - | chr2_3:29243862-29243881 | Msa0287200:CDS | 40.0% | |
| ! | TTAGGTAATGGTCCTTATCC+AGG | - | chr2_3:29243931-29243950 | Msa0287200:CDS | 40.0% |
| GTAAAACTCTCCATAGCAGT+AGG | + | chr2_3:29243964-29243983 | None:intergenic | 40.0% | |
| ! | AGAGTTTTACTGACCGTGTT+AGG | - | chr2_3:29243974-29243993 | Msa0287200:intron | 40.0% |
| AGTAGATGGATCGACAACAA+TGG | - | chr2_3:29243997-29244016 | Msa0287200:intron | 40.0% | |
| TTAGGAGTGGTGAAGATACA+AGG | - | chr2_3:29244067-29244086 | Msa0287200:intron | 40.0% | |
| ! | GCCCTTGTGATTTTCATCAA+TGG | + | chr2_3:29244265-29244284 | None:intergenic | 40.0% |
| GGATGAAACAGAAACTCAAC+AGG | + | chr2_3:29244364-29244383 | None:intergenic | 40.0% | |
| !! | CTTGCAATTTGCTATGCTGA+TGG | - | chr2_3:29244391-29244410 | Msa0287200:intron | 40.0% |
| CTCATACAAACCTCGTAGAA+TGG | + | chr2_3:29244493-29244512 | None:intergenic | 40.0% | |
| !! | TGCGGTTGATGATGATATCA+AGG | - | chr2_3:29244566-29244585 | Msa0287200:CDS | 40.0% |
| AAGGAAACGACAGCTAGAAA+AGG | - | chr2_3:29244598-29244617 | Msa0287200:CDS | 40.0% | |
| ATCAATGAATTCGTCACCTG+AGG | + | chr2_3:29244633-29244652 | None:intergenic | 40.0% | |
| !!! | TTGGTTTTGCAGACATTCCA+TGG | - | chr2_3:29244657-29244676 | Msa0287200:CDS | 40.0% |
| !! | TGGTTTTGCAGACATTCCAT+GGG | - | chr2_3:29244658-29244677 | Msa0287200:CDS | 40.0% |
| ! | GTAGTATTTGTTGCTAGGCT+TGG | - | chr2_3:29244957-29244976 | Msa0287200:CDS | 40.0% |
| ACATATTGTTGGAGTTGGAG+GGG | + | chr2_3:29245220-29245239 | None:intergenic | 40.0% | |
| CTCATAAAAGGACCATCCTT+TGG | + | chr2_3:29245299-29245318 | None:intergenic | 40.0% | |
| ! | GGATGGTCCTTTTATGAGTT+TGG | - | chr2_3:29245301-29245320 | Msa0287200:CDS | 40.0% |
| GATGTAGAGTTGCTAACAGA+AGG | - | chr2_3:29245348-29245367 | Msa0287200:CDS | 40.0% | |
| !!! | ACCAAACTTTTGAAGCTTGC+TGG | + | chr2_3:29245403-29245422 | None:intergenic | 40.0% |
| ! | TTTCGGTGAATTTTCTGCAC+AGG | - | chr2_3:29245426-29245445 | Msa0287200:CDS | 40.0% |
| ! | GAGTAGTTAGTTTGAGGTTC+AGG | - | chr2_3:29245542-29245561 | Msa0287200:intron | 40.0% |
| GGTCAAGCTCTTGATTCAGT+TGG | + | chr2_3:29242946-29242965 | None:intergenic | 45.0% | |
| ATCTCAAAGAACCAACCTGG+CGG | + | chr2_3:29243022-29243041 | None:intergenic | 45.0% | |
| AGCATCTCAAAGAACCAACC+TGG | + | chr2_3:29243025-29243044 | None:intergenic | 45.0% | |
| CTTCATGATGACAATGGCAC+AGG | + | chr2_3:29243056-29243075 | None:intergenic | 45.0% | |
| !!! | GGGCTCATTATTTTGGAACC+AGG | + | chr2_3:29243232-29243251 | None:intergenic | 45.0% |
| ! | GGTAAATGGTTGCTGGTTGT+TGG | + | chr2_3:29243253-29243272 | None:intergenic | 45.0% |
| ACAACCAGCAACCATTTACC+GGG | - | chr2_3:29243253-29243272 | Msa0287200:three_prime_UTR | 45.0% | |
| TAATCCCGGTAAATGGTTGC+TGG | + | chr2_3:29243260-29243279 | None:intergenic | 45.0% | |
| TTCACTGTGTTCGACAACTG+TGG | + | chr2_3:29243298-29243317 | None:intergenic | 45.0% | |
| ACAGTTGTCGAACACAGTGA+AGG | - | chr2_3:29243297-29243316 | Msa0287200:exon | 45.0% | |
| TATGTCCTGGCCAATAGTTG+CGG | + | chr2_3:29243323-29243342 | None:intergenic | 45.0% | |
| GACATAGGAAGGAGTAGTCA+TGG | - | chr2_3:29243337-29243356 | Msa0287200:CDS | 45.0% | |
| !! | GTTGGCTCTGAGGATAAGTT+TGG | + | chr2_3:29243535-29243554 | None:intergenic | 45.0% |
| !! | CTAAGTTGATGTCCCACAGA+TGG | + | chr2_3:29243580-29243599 | None:intergenic | 45.0% |
| CTGCTGAGATGAACTGACAA+AGG | + | chr2_3:29243653-29243672 | None:intergenic | 45.0% | |
| GTAGGTAGTAGTCCTGGATA+AGG | + | chr2_3:29243946-29243965 | None:intergenic | 45.0% | |
| ATAGCAGTAGGTAGTAGTCC+TGG | + | chr2_3:29243952-29243971 | None:intergenic | 45.0% | |
| AGGACTACTACCTACTGCTA+TGG | - | chr2_3:29243951-29243970 | Msa0287200:CDS | 45.0% | |
| CGATCCATCTACTCCTAACA+CGG | + | chr2_3:29243990-29244009 | None:intergenic | 45.0% | |
| AGACATTCCATGGGAAGAAG+TGG | - | chr2_3:29244667-29244686 | Msa0287200:CDS | 45.0% | |
| GACATTCCATGGGAAGAAGT+GGG | - | chr2_3:29244668-29244687 | Msa0287200:CDS | 45.0% | |
| CTGAGTGGAAGACAATAGGT+CGG | + | chr2_3:29244806-29244825 | None:intergenic | 45.0% | |
| CCATCTGAGTGGAAGACAAT+AGG | + | chr2_3:29244810-29244829 | None:intergenic | 45.0% | |
| CCTATTGTCTTCCACTCAGA+TGG | - | chr2_3:29244807-29244826 | Msa0287200:CDS | 45.0% | |
| GTGAAACAATGACGCAACCA+GGG | + | chr2_3:29245124-29245143 | None:intergenic | 45.0% | |
| TGTGAAACAATGACGCAACC+AGG | + | chr2_3:29245125-29245144 | None:intergenic | 45.0% | |
| ! | TTCCTCTGGCTACTTTCCAA+AGG | - | chr2_3:29245280-29245299 | Msa0287200:CDS | 45.0% |
| ! | ATCCTTTGGAAAGTAGCCAG+AGG | + | chr2_3:29245285-29245304 | None:intergenic | 45.0% |
| ! | TCTGGCTACTTTCCAAAGGA+TGG | - | chr2_3:29245284-29245303 | Msa0287200:CDS | 45.0% |
| GCCAGCAAGCTTCAAAAGTT+TGG | - | chr2_3:29245399-29245418 | Msa0287200:CDS | 45.0% | |
| ! | GGTGAATTTTCTGCACAGGT+GGG | - | chr2_3:29245430-29245449 | Msa0287200:CDS | 45.0% |
| ! | GTTAGTTTGAGGTTCAGGGT+TGG | - | chr2_3:29245547-29245566 | Msa0287200:intron | 45.0% |
| !! | AGGGTTGGTAAGACTACATG+AGG | - | chr2_3:29245562-29245581 | Msa0287200:intron | 45.0% |
| !! | GGGTTGGTAAGACTACATGA+GGG | - | chr2_3:29245563-29245582 | Msa0287200:intron | 45.0% |
| !! | GGTTGGTAAGACTACATGAG+GGG | - | chr2_3:29245564-29245583 | Msa0287200:intron | 45.0% |
| ACAGTGAAGGCCGCAACTAT+TGG | - | chr2_3:29243310-29243329 | Msa0287200:exon | 50.0% | |
| GCAACTATTGGCCAGGACAT+AGG | - | chr2_3:29243322-29243341 | Msa0287200:CDS | 50.0% | |
| CTATTGGCCAGGACATAGGA+AGG | - | chr2_3:29243326-29243345 | Msa0287200:CDS | 50.0% | |
| GACTACTCCTTCCTATGTCC+TGG | + | chr2_3:29243336-29243355 | None:intergenic | 50.0% | |
| !! | TGAGGTTGATGCACCAAACG+AGG | + | chr2_3:29243461-29243480 | None:intergenic | 50.0% |
| AACCTCAAATGGGTCGTCAG+TGG | - | chr2_3:29243474-29243493 | Msa0287200:intron | 50.0% | |
| TTCCACTGACGACCCATTTG+AGG | + | chr2_3:29243479-29243498 | None:intergenic | 50.0% | |
| TAGAAACTGTGGAGCGGTCA+AGG | + | chr2_3:29243503-29243522 | None:intergenic | 50.0% | |
| TGACCGCTCCACAGTTTCTA+TGG | - | chr2_3:29243503-29243522 | Msa0287200:intron | 50.0% | |
| GACCGCTCCACAGTTTCTAT+GGG | - | chr2_3:29243504-29243523 | Msa0287200:intron | 50.0% | |
| ACCGCTCCACAGTTTCTATG+GGG | - | chr2_3:29243505-29243524 | Msa0287200:intron | 50.0% | |
| TCCCCATAGAAACTGTGGAG+CGG | + | chr2_3:29243509-29243528 | None:intergenic | 50.0% | |
| GGACTTCCCCATAGAAACTG+TGG | + | chr2_3:29243514-29243533 | None:intergenic | 50.0% | |
| !! | TGAAGGTTTGGTTGGCTCTG+AGG | + | chr2_3:29243545-29243564 | None:intergenic | 50.0% |
| AGCCAACCAAACCTTCAGCT+TGG | - | chr2_3:29243548-29243567 | Msa0287200:intron | 50.0% | |
| ! | GACCAAGCTGAAGGTTTGGT+TGG | + | chr2_3:29243553-29243572 | None:intergenic | 50.0% |
| CCTTGACCAAGCTGAAGGTT+TGG | + | chr2_3:29243557-29243576 | None:intergenic | 50.0% | |
| CCAAACCTTCAGCTTGGTCA+AGG | - | chr2_3:29243554-29243573 | Msa0287200:intron | 50.0% | |
| ! | GCTATAGAGGCATGGGTCTA+GGG | - | chr2_3:29243779-29243798 | Msa0287200:intron | 50.0% |
| ! | ATGGGTCTAGGGCACAATGA+TGG | - | chr2_3:29243790-29243809 | Msa0287200:intron | 50.0% |
| CTGACCGTGTTAGGAGTAGA+TGG | - | chr2_3:29243983-29244002 | Msa0287200:intron | 50.0% | |
| ACTTCTCCCACTTCTTCCCA+TGG | + | chr2_3:29244677-29244696 | None:intergenic | 50.0% | |
| TTGGCGTATGCTCGAATCCA+AGG | - | chr2_3:29244720-29244739 | Msa0287200:CDS | 50.0% | |
| TGGCGTATGCTCGAATCCAA+GGG | - | chr2_3:29244721-29244740 | Msa0287200:CDS | 50.0% | |
| !! | TTACGAGGGCATTCTTCCCT+TGG | + | chr2_3:29244740-29244759 | None:intergenic | 50.0% |
| CAGCTTCAGAACCATCTGAG+TGG | + | chr2_3:29244821-29244840 | None:intergenic | 50.0% | |
| !! | TGGTTCTGAAGCTGCTGATC+AGG | - | chr2_3:29244827-29244846 | Msa0287200:CDS | 50.0% |
| TGTCTACGTCTCATTGTCCC+TGG | - | chr2_3:29245104-29245123 | Msa0287200:CDS | 50.0% | |
| ! | CGGTGAATTTTCTGCACAGG+TGG | - | chr2_3:29245429-29245448 | Msa0287200:CDS | 50.0% |
| AGGTGGGAGCAAAAGCTGAT+GGG | - | chr2_3:29245446-29245465 | Msa0287200:CDS | 50.0% | |
| ! | CAAGTGGGTTCACCTCTAGC+CGG | - | chr2_3:29242992-29243011 | Msa0287200:three_prime_UTR | 55.0% |
| ! | CGTGGAGCTTTGTCCTCGTT+TGG | - | chr2_3:29243445-29243464 | Msa0287200:intron | 55.0% |
| ! | GATGGCCTTGACCAAGCTGA+AGG | + | chr2_3:29243562-29243581 | None:intergenic | 55.0% |
| AGCTTGGTCAAGGCCATCTG+TGG | - | chr2_3:29243564-29243583 | Msa0287200:intron | 55.0% | |
| GCTTGGTCAAGGCCATCTGT+GGG | - | chr2_3:29243565-29243584 | Msa0287200:intron | 55.0% | |
| !! | CATGTCGGTTCTGCTCCTTC+AGG | - | chr2_3:29243688-29243707 | Msa0287200:intron | 55.0% |
| ! | GGCTATAGAGGCATGGGTCT+AGG | - | chr2_3:29243778-29243797 | Msa0287200:intron | 55.0% |
| CAGGTGGGAGCAAAAGCTGA+TGG | - | chr2_3:29245445-29245464 | Msa0287200:CDS | 55.0% | |
| GAAGGCCGCAACTATTGGCC+AGG | - | chr2_3:29243315-29243334 | Msa0287200:CDS | 60.0% | |
| GAACCAACCTGGCGGAGAGC+CGG | + | chr2_3:29243014-29243033 | None:intergenic | 65.0% | |
| ! | TAGCCGGCTCTCCGCCAGGT+TGG | - | chr2_3:29243008-29243027 | Msa0287200:three_prime_UTR | 70.0% |
| CCTGGCGGAGAGCCGGCTAG+AGG | + | chr2_3:29243007-29243026 | None:intergenic | 75.0% | |
| ! | CCTCTAGCCGGCTCTCCGCC+AGG | - | chr2_3:29243004-29243023 | Msa0287200:three_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 29242932 | 29245713 | 29242932 | ID=Msa0287200;Name=Msa0287200 |
| chr2_3 | mRNA | 29242932 | 29245713 | 29242932 | ID=Msa0287200-mRNA-1;Parent=Msa0287200;Name=Msa0287200-mRNA-1;_AED=0.09;_eAED=0.09;_QI=6|1|1|1|1|1|6|379|503 |
| chr2_3 | exon | 29242932 | 29243445 | 29242932 | ID=Msa0287200-mRNA-1:exon:10300;Parent=Msa0287200-mRNA-1 |
| chr2_3 | exon | 29243797 | 29243976 | 29243797 | ID=Msa0287200-mRNA-1:exon:10299;Parent=Msa0287200-mRNA-1 |
| chr2_3 | exon | 29244144 | 29244212 | 29244144 | ID=Msa0287200-mRNA-1:exon:10298;Parent=Msa0287200-mRNA-1 |
| chr2_3 | exon | 29244325 | 29244409 | 29244325 | ID=Msa0287200-mRNA-1:exon:10297;Parent=Msa0287200-mRNA-1 |
| chr2_3 | exon | 29244524 | 29245478 | 29244524 | ID=Msa0287200-mRNA-1:exon:10296;Parent=Msa0287200-mRNA-1 |
| chr2_3 | exon | 29245620 | 29245713 | 29245620 | ID=Msa0287200-mRNA-1:exon:10295;Parent=Msa0287200-mRNA-1 |
| chr2_3 | five_prime_UTR | 29245708 | 29245713 | 29245708 | ID=Msa0287200-mRNA-1:five_prime_utr;Parent=Msa0287200-mRNA-1 |
| chr2_3 | CDS | 29245620 | 29245707 | 29245620 | ID=Msa0287200-mRNA-1:cds;Parent=Msa0287200-mRNA-1 |
| chr2_3 | CDS | 29244524 | 29245478 | 29244524 | ID=Msa0287200-mRNA-1:cds;Parent=Msa0287200-mRNA-1 |
| chr2_3 | CDS | 29244325 | 29244409 | 29244325 | ID=Msa0287200-mRNA-1:cds;Parent=Msa0287200-mRNA-1 |
| chr2_3 | CDS | 29244144 | 29244212 | 29244144 | ID=Msa0287200-mRNA-1:cds;Parent=Msa0287200-mRNA-1 |
| chr2_3 | CDS | 29243797 | 29243976 | 29243797 | ID=Msa0287200-mRNA-1:cds;Parent=Msa0287200-mRNA-1 |
| chr2_3 | CDS | 29243311 | 29243445 | 29243311 | ID=Msa0287200-mRNA-1:cds;Parent=Msa0287200-mRNA-1 |
| chr2_3 | three_prime_UTR | 29242932 | 29243310 | 29242932 | ID=Msa0287200-mRNA-1:three_prime_utr;Parent=Msa0287200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
