Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0288250 | XP_013443259.1 | 75.352 | 142 | 31 | 3 | 5 | 143 | 25 | 165 | 1.60e-64 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0288250 | sp|Q9SA16|P2A09_ARATH | 40.789 | 152 | 71 | 7 | 6 | 139 | 25 | 175 | 3.28e-24 | 95.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0288250 | B7FH95 | 75.352 | 142 | 31 | 3 | 5 | 143 | 25 | 165 | 7.62e-65 | 204 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0288250 | Msa1451620 | -0.804147 | 2.483771e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0288250 | MtrunA17_Chr2g0305631 | 75.352 | 142 | 31 | 3 | 5 | 143 | 25 | 165 | 1.47e-68 | 204 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0288250 | AT1G10155.1 | 43.137 | 153 | 67 | 7 | 6 | 139 | 28 | 179 | 8.56e-27 | 99.4 |
| Msa0288250 | AT1G31200.1 | 40.800 | 125 | 58 | 6 | 30 | 139 | 3 | 126 | 1.58e-17 | 73.9 |
Find 37 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAAATGGAACTTCATTT+TGG | 0.174807 | 2_3:-32716475 | Msa0288250:CDS |
| CAAAAGGACTCAACATTATA+TGG | 0.205970 | 2_3:-32717642 | Msa0288250:CDS |
| CATATAATGTTGAGTCCTTT+TGG | 0.242983 | 2_3:+32717643 | None:intergenic |
| GGTAAAGTAACTGTAAATAA+AGG | 0.279344 | 2_3:-32716691 | Msa0288250:CDS |
| GATGGCTAAAGTTGGGAAAA+AGG | 0.285093 | 2_3:-32716593 | Msa0288250:CDS |
| TCAAGCTTATCCTCATCTTT+TGG | 0.288311 | 2_3:+32716514 | None:intergenic |
| CAGAGCTGACACAAGTTTCA+TGG | 0.313789 | 2_3:-32716726 | Msa0288250:CDS |
| GTTCCCCAACCGAAACCTTC+TGG | 0.315104 | 2_3:+32716634 | None:intergenic |
| ATGAAGTATGGACTGGAAAA+TGG | 0.317135 | 2_3:-32716447 | Msa0288250:CDS |
| GTTTCATGGTTGGAGGTATC+TGG | 0.319576 | 2_3:-32716712 | Msa0288250:CDS |
| AAAGGGAACATATAAATATA+AGG | 0.378594 | 2_3:-32716575 | Msa0288250:CDS |
| GTAAAGTAACTGTAAATAAA+GGG | 0.432001 | 2_3:-32716690 | Msa0288250:CDS |
| AAAAGGACTCAACATTATAT+GGG | 0.432953 | 2_3:-32717641 | Msa0288250:CDS |
| GGGGAAATGATCCTCGCTAC+TGG | 0.437766 | 2_3:-32717621 | Msa0288250:CDS |
| TGAAGTGACAAGTGATGAAA+TGG | 0.443392 | 2_3:-32716488 | Msa0288250:CDS |
| AAGCCAGAAGGTTTCGGTTG+GGG | 0.447465 | 2_3:-32716637 | Msa0288250:CDS |
| GTGAATCTAGATTGTGGTAC+TGG | 0.449381 | 2_3:-32716550 | Msa0288250:CDS |
| GAAGTTAAGCCAGAAGGTTT+CGG | 0.456508 | 2_3:-32716643 | Msa0288250:CDS |
| TAAGCCAGAAGGTTTCGGTT+GGG | 0.457218 | 2_3:-32716638 | Msa0288250:CDS |
| GGGAACCAACACAGATGTAC+TGG | 0.521049 | 2_3:-32716617 | Msa0288250:CDS |
| GACACAAGTTTCATGGTTGG+AGG | 0.541826 | 2_3:-32716719 | Msa0288250:CDS |
| GCTGACACAAGTTTCATGGT+TGG | 0.548605 | 2_3:-32716722 | Msa0288250:CDS |
| GGATTGTATGAAGTATGGAC+TGG | 0.571188 | 2_3:-32716454 | Msa0288250:CDS |
| TACTGGTGATGGCTAAAGTT+GGG | 0.572904 | 2_3:-32716600 | Msa0288250:CDS |
| CAACACAGATGTACTGGTGA+TGG | 0.574443 | 2_3:-32716611 | Msa0288250:CDS |
| TTAAGCCAGAAGGTTTCGGT+TGG | 0.579224 | 2_3:-32716639 | Msa0288250:CDS |
| TGGACTGGAAAATGGAAAGG+AGG | 0.581680 | 2_3:-32716439 | Msa0288250:CDS |
| ATTTGCGTGATAAAACCAAA+AGG | 0.586830 | 2_3:-32717658 | Msa0288250:CDS |
| GTACTGGTGATGGCTAAAGT+TGG | 0.597259 | 2_3:-32716601 | Msa0288250:CDS |
| ATATACAGTGAAATTTGATG+TGG | 0.606680 | 2_3:-32716665 | Msa0288250:CDS |
| GTATGGACTGGAAAATGGAA+AGG | 0.608777 | 2_3:-32716442 | Msa0288250:CDS |
| GACAACCATTCCAAAAGATG+AGG | 0.617689 | 2_3:-32716524 | Msa0288250:CDS |
| CATCACCAGTACATCTGTGT+TGG | 0.619122 | 2_3:+32716612 | None:intergenic |
| GATGTGGAAGTTAAGCCAGA+AGG | 0.622878 | 2_3:-32716649 | Msa0288250:CDS |
| AAAGGACTCAACATTATATG+GGG | 0.648494 | 2_3:-32717640 | Msa0288250:CDS |
| AGGAGGTTTGAGAATCTACA+AGG | 0.649541 | 2_3:-32716422 | Msa0288250:CDS |
| AAGGTAGTGAATCTAGATTG+TGG | 0.695426 | 2_3:-32716556 | Msa0288250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTGTTAATTATATAAATAAA+TGG | + | chr2_3:32717572-32717591 | None:intergenic | 10.0% |
| !! | TATGTATATGTATAAATTAA+GGG | - | chr2_3:32717998-32718017 | Msa0288250:intron | 10.0% |
| !!! | AATATGGATTTTTATATTTT+TGG | + | chr2_3:32718270-32718289 | None:intergenic | 10.0% |
| !! | TTATTTCAGTAAAGAAAATT+AGG | - | chr2_3:32716416-32716435 | Msa0288250:CDS | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | + | chr2_3:32716850-32716869 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | + | chr2_3:32716849-32716868 | None:intergenic | 15.0% |
| !!! | TGAAAACTTTTAAAATGTAA+GGG | + | chr2_3:32716710-32716729 | None:intergenic | 15.0% |
| !!! | TTGAAAACTTTTAAAATGTA+AGG | + | chr2_3:32716711-32716730 | None:intergenic | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | + | chr2_3:32716850-32716869 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | + | chr2_3:32716849-32716868 | None:intergenic | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | + | chr2_3:32716850-32716869 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | + | chr2_3:32716849-32716868 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | - | chr2_3:32716849-32716868 | Msa0288250:intron | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | - | chr2_3:32716850-32716869 | Msa0288250:intron | 15.0% |
| !! | GAAAACTAAAATAAACATAA+TGG | - | chr2_3:32716850-32716869 | Msa0288250:intron | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | - | chr2_3:32716849-32716868 | Msa0288250:intron | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | - | chr2_3:32716850-32716869 | Msa0288250:intron | 15.0% |
| !!! | ATTTATTTTAGTTTTCAAGT+TGG | + | chr2_3:32716968-32716987 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAATGTA+TGG | - | chr2_3:32716971-32716990 | Msa0288250:intron | 15.0% |
| !! | GAAAACTAAAATAAATGTAT+GGG | - | chr2_3:32716972-32716991 | Msa0288250:intron | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | - | chr2_3:32716849-32716868 | Msa0288250:intron | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | - | chr2_3:32716850-32716869 | Msa0288250:intron | 15.0% |
| !!! | TTCATGTTTTTTTTTTTACA+AGG | - | chr2_3:32717155-32717174 | Msa0288250:intron | 15.0% |
| !! | ATTTATATAATTAACAGCAA+AGG | - | chr2_3:32717575-32717594 | Msa0288250:intron | 15.0% |
| !! | GTATGTATATGTATAAATTA+AGG | - | chr2_3:32717997-32718016 | Msa0288250:intron | 15.0% |
| !! | AACAAAACATGAATTAAATA+TGG | + | chr2_3:32718286-32718305 | None:intergenic | 15.0% |
| !!! | AAATCGAAGAAATTTTTTAA+AGG | - | chr2_3:32718394-32718413 | Msa0288250:intron | 15.0% |
| !!! | AATCGAAGAAATTTTTTAAA+GGG | - | chr2_3:32718395-32718414 | Msa0288250:intron | 15.0% |
| !!! | AAGAAACTTTTTTTTGAAAG+AGG | - | chr2_3:32716443-32716462 | Msa0288250:CDS | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | - | chr2_3:32716654-32716673 | Msa0288250:CDS | 20.0% |
| !!! | CATTTTAAAAGTTTTCAAGT+TGG | - | chr2_3:32716713-32716732 | Msa0288250:CDS | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | - | chr2_3:32716654-32716673 | Msa0288250:CDS | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+CGG | - | chr2_3:32716654-32716673 | Msa0288250:CDS | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | + | chr2_3:32716654-32716673 | None:intergenic | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | + | chr2_3:32716654-32716673 | None:intergenic | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | + | chr2_3:32716654-32716673 | None:intergenic | 20.0% |
| !! | TTGAAACTTTCAAAACATAA+GGG | - | chr2_3:32717001-32717020 | Msa0288250:intron | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | + | chr2_3:32716654-32716673 | None:intergenic | 20.0% |
| !! | AAAAATTTGAACAATCAACA+CGG | + | chr2_3:32717192-32717211 | None:intergenic | 20.0% |
| !! | AAAAAACAACAAATATCAAG+AGG | + | chr2_3:32717801-32717820 | None:intergenic | 20.0% |
| !!! | TTTGTTGTTTTTTTATGTTG+AGG | - | chr2_3:32717808-32717827 | Msa0288250:intron | 20.0% |
| !!! | ACATTTTATATACTGATTTG+AGG | - | chr2_3:32717857-32717876 | Msa0288250:intron | 20.0% |
| !!! | ATGGATTTTTATATTTTTGG+CGG | + | chr2_3:32718267-32718286 | None:intergenic | 20.0% |
| !!! | CTAAAAACATATTTAAAGCA+TGG | - | chr2_3:32718450-32718469 | Msa0288250:intron | 20.0% |
| !! | GTAAAGTAACTGTAAATAAA+GGG | - | chr2_3:32718597-32718616 | Msa0288250:intron | 20.0% |
| !! | AAAGGGAACATATAAATATA+AGG | - | chr2_3:32718712-32718731 | Msa0288250:intron | 20.0% |
| !!! | ACCATTTTAGAACTATTTGT+TGG | - | chr2_3:32716575-32716594 | Msa0288250:CDS | 25.0% |
| !!! | CCATTTTAGAACTATTTGTT+GGG | - | chr2_3:32716576-32716595 | Msa0288250:CDS | 25.0% |
| !!! | AAACTTCGTTGTTTTAGATT+AGG | - | chr2_3:32716605-32716624 | Msa0288250:CDS | 25.0% |
| ! | TTGAAACTTTCAAAACGTAA+GGG | + | chr2_3:32716941-32716960 | None:intergenic | 25.0% |
| ! | TTGAAACTTTCAAAACGTAA+GGG | + | chr2_3:32716941-32716960 | None:intergenic | 25.0% |
| ! | TTGAAACTTTCAAAACGTAA+GGG | - | chr2_3:32716941-32716960 | Msa0288250:intron | 25.0% |
| !!! | ATGTTTTGAAAGTTTCAAGT+TGG | + | chr2_3:32716999-32717018 | None:intergenic | 25.0% |
| ! | CTTGAAACTTTCAAAACATA+AGG | - | chr2_3:32717000-32717019 | Msa0288250:intron | 25.0% |
| ! | GTTTGACATTCTTAATCTAA+AGG | + | chr2_3:32717076-32717095 | None:intergenic | 25.0% |
| ! | AAAAGGACTCAACATTATAT+GGG | - | chr2_3:32717646-32717665 | Msa0288250:CDS | 25.0% |
| ! | TATACATACATATGTGAAGA+AGG | + | chr2_3:32717986-32718005 | None:intergenic | 25.0% |
| !! | AGTCGAAGGAAAATTTTATA+GGG | + | chr2_3:32718070-32718089 | None:intergenic | 25.0% |
| !! | AAGTCGAAGGAAAATTTTAT+AGG | + | chr2_3:32718071-32718090 | None:intergenic | 25.0% |
| ! | TTATAGATACTAAAAGTCGA+AGG | + | chr2_3:32718084-32718103 | None:intergenic | 25.0% |
| !! | ATGAGTTGACTTAAAAATAG+GGG | + | chr2_3:32718129-32718148 | None:intergenic | 25.0% |
| !! | CATGAGTTGACTTAAAAATA+GGG | + | chr2_3:32718130-32718149 | None:intergenic | 25.0% |
| !! | ACATGAGTTGACTTAAAAAT+AGG | + | chr2_3:32718131-32718150 | None:intergenic | 25.0% |
| !! | TACATATGAGTTTGCTTAAA+AGG | - | chr2_3:32718332-32718351 | Msa0288250:intron | 25.0% |
| ! | GGTAAAGTAACTGTAAATAA+AGG | - | chr2_3:32718596-32718615 | Msa0288250:intron | 25.0% |
| ! | ATATACAGTGAAATTTGATG+TGG | - | chr2_3:32718622-32718641 | Msa0288250:intron | 25.0% |
| !! | ATTTTGGATTGTATGAAGTA+TGG | - | chr2_3:32718828-32718847 | Msa0288250:intron | 25.0% |
| !! | CCCAACAAATAGTTCTAAAA+TGG | + | chr2_3:32716579-32716598 | None:intergenic | 30.0% |
| CTTGAAACTTTCAAAACGTA+AGG | + | chr2_3:32716940-32716959 | None:intergenic | 30.0% | |
| !!! | ACGTTTTGAAAGTTTCAAGT+TGG | - | chr2_3:32716683-32716702 | Msa0288250:CDS | 30.0% |
| CTTGAAACTTTCAAAACGTA+AGG | + | chr2_3:32716940-32716959 | None:intergenic | 30.0% | |
| !!! | ACGTTTTGAAAGTTTCAAGT+TGG | - | chr2_3:32716683-32716702 | Msa0288250:CDS | 30.0% |
| CTTGAAACTTTCAAAACGTA+AGG | - | chr2_3:32716940-32716959 | Msa0288250:intron | 30.0% | |
| CACACAAAAAAATTGGATTG+CGG | + | chr2_3:32717432-32717451 | None:intergenic | 30.0% | |
| !!! | AATTTTTTTGTGTGGTGTCT+GGG | - | chr2_3:32717438-32717457 | Msa0288250:intron | 30.0% |
| TTCAGTCAAATTTGGATTTG+CGG | + | chr2_3:32717532-32717551 | None:intergenic | 30.0% | |
| GAGTACTATTCAGTCAAATT+TGG | + | chr2_3:32717540-32717559 | None:intergenic | 30.0% | |
| AATATATGTGTGCAGGATAA+TGG | - | chr2_3:32717599-32717618 | Msa0288250:intron | 30.0% | |
| ATTTGCGTGATAAAACCAAA+AGG | - | chr2_3:32717629-32717648 | Msa0288250:CDS | 30.0% | |
| ! | CATATAATGTTGAGTCCTTT+TGG | + | chr2_3:32717647-32717666 | None:intergenic | 30.0% |
| CAAAAGGACTCAACATTATA+TGG | - | chr2_3:32717645-32717664 | Msa0288250:CDS | 30.0% | |
| AAAGGACTCAACATTATATG+GGG | - | chr2_3:32717647-32717666 | Msa0288250:CDS | 30.0% | |
| TGATTAGATAGAGTTCTTCA+TGG | + | chr2_3:32717772-32717791 | None:intergenic | 30.0% | |
| TGTCTTTCACAAATATCAAG+AGG | + | chr2_3:32717840-32717859 | None:intergenic | 30.0% | |
| TTATGTGCACACATTATGTT+AGG | - | chr2_3:32717930-32717949 | Msa0288250:intron | 30.0% | |
| TTAAGGGTTAAATACGTGTT+TGG | - | chr2_3:32718014-32718033 | Msa0288250:intron | 30.0% | |
| ! | TATGAGTTTGCTTAAAAGGA+TGG | - | chr2_3:32718336-32718355 | Msa0288250:intron | 30.0% |
| ! | AAAAATTCCATCTTCGCTTT+TGG | + | chr2_3:32718363-32718382 | None:intergenic | 30.0% |
| AAGGGACTAAAATGAAAAGT+TGG | - | chr2_3:32718413-32718432 | Msa0288250:intron | 30.0% | |
| ! | GATGAAATGGAACTTCATTT+TGG | - | chr2_3:32718812-32718831 | Msa0288250:intron | 30.0% |
| TTAGGCTTAATTGCATGTGT+TGG | - | chr2_3:32716623-32716642 | Msa0288250:CDS | 35.0% | |
| AAAACCGCGAAATTGTTACT+CGG | - | chr2_3:32717282-32717301 | Msa0288250:intron | 35.0% | |
| !!! | CGCAATCCAATTTTTTTGTG+TGG | - | chr2_3:32717430-32717449 | Msa0288250:intron | 35.0% |
| CAGACACCACACAAAAAAAT+TGG | + | chr2_3:32717439-32717458 | None:intergenic | 35.0% | |
| !!! | CAATTTTTTTGTGTGGTGTC+TGG | - | chr2_3:32717437-32717456 | Msa0288250:intron | 35.0% |
| GACAATGCATAATGTATGCA+AGG | + | chr2_3:32717478-32717497 | None:intergenic | 35.0% | |
| ATGGCTAAAGTTGGGAAAAA+GGG | - | chr2_3:32718695-32718714 | Msa0288250:intron | 35.0% | |
| AAGGTAGTGAATCTAGATTG+TGG | - | chr2_3:32718731-32718750 | Msa0288250:intron | 35.0% | |
| !! | CTTATCCTCATCTTTTGGAA+TGG | + | chr2_3:32718771-32718790 | None:intergenic | 35.0% |
| ! | TCAAGCTTATCCTCATCTTT+TGG | + | chr2_3:32718776-32718795 | None:intergenic | 35.0% |
| TGAAGTGACAAGTGATGAAA+TGG | - | chr2_3:32718799-32718818 | Msa0288250:intron | 35.0% | |
| !! | ATGAAGTATGGACTGGAAAA+TGG | - | chr2_3:32718840-32718859 | Msa0288250:intron | 35.0% |
| TCAAGTCGGTCCAAAACATA+AGG | - | chr2_3:32716818-32716837 | Msa0288250:intron | 40.0% | |
| CAAGTCGGTCCAAAACATAA+GGG | - | chr2_3:32716819-32716838 | Msa0288250:intron | 40.0% | |
| !!! | CAAGTTGGTCCCTTATGTTT+TGG | + | chr2_3:32716757-32716776 | None:intergenic | 40.0% |
| GCTTTCTCGTGGTAAAAGTT+TGG | + | chr2_3:32717107-32717126 | None:intergenic | 40.0% | |
| !! | TTCATGTGTTAGCTTTCTCG+TGG | + | chr2_3:32717118-32717137 | None:intergenic | 40.0% |
| CACATACAAGTGAATGTGCT+GGG | + | chr2_3:32717338-32717357 | None:intergenic | 40.0% | |
| TGCATAATGTATGCAAGGTC+CGG | + | chr2_3:32717473-32717492 | None:intergenic | 40.0% | |
| TGAGCTTAGCTCAGTTAGTA+AGG | + | chr2_3:32717500-32717519 | None:intergenic | 40.0% | |
| CAAAGGCAATATATGTGTGC+AGG | - | chr2_3:32717592-32717611 | Msa0288250:intron | 40.0% | |
| !!! | TCTGTTATTTTCCAGTAGCG+AGG | + | chr2_3:32717680-32717699 | None:intergenic | 40.0% |
| GTGCACACATTATGTTAGGA+TGG | - | chr2_3:32717934-32717953 | Msa0288250:intron | 40.0% | |
| GAAGTTAAGCCAGAAGGTTT+CGG | - | chr2_3:32718644-32718663 | Msa0288250:intron | 40.0% | |
| !! | TACTGGTGATGGCTAAAGTT+GGG | - | chr2_3:32718687-32718706 | Msa0288250:intron | 40.0% |
| GATGGCTAAAGTTGGGAAAA+AGG | - | chr2_3:32718694-32718713 | Msa0288250:intron | 40.0% | |
| GTGAATCTAGATTGTGGTAC+TGG | - | chr2_3:32718737-32718756 | Msa0288250:intron | 40.0% | |
| GACAACCATTCCAAAAGATG+AGG | - | chr2_3:32718763-32718782 | Msa0288250:intron | 40.0% | |
| GGATTGTATGAAGTATGGAC+TGG | - | chr2_3:32718833-32718852 | Msa0288250:intron | 40.0% | |
| !! | GTATGGACTGGAAAATGGAA+AGG | - | chr2_3:32718845-32718864 | Msa0288250:intron | 40.0% |
| AGGAGGTTTGAGAATCTACA+AGG | - | chr2_3:32718865-32718884 | Msa0288250:intron | 40.0% | |
| ACGTCCGAGTAACAATTTCG+CGG | + | chr2_3:32717289-32717308 | None:intergenic | 45.0% | |
| TGTTACTCGGACGTCATGAA+TGG | - | chr2_3:32717295-32717314 | Msa0288250:intron | 45.0% | |
| GTTACTCGGACGTCATGAAT+GGG | - | chr2_3:32717296-32717315 | Msa0288250:intron | 45.0% | |
| TTACTCGGACGTCATGAATG+GGG | - | chr2_3:32717297-32717316 | Msa0288250:intron | 45.0% | |
| TACAAGTGAATGTGCTGGGT+GGG | + | chr2_3:32717334-32717353 | None:intergenic | 45.0% | |
| ATACAAGTGAATGTGCTGGG+TGG | + | chr2_3:32717335-32717354 | None:intergenic | 45.0% | |
| GCACATACAAGTGAATGTGC+TGG | + | chr2_3:32717339-32717358 | None:intergenic | 45.0% | |
| CATAATGTATGCAAGGTCCG+GGG | + | chr2_3:32717471-32717490 | None:intergenic | 45.0% | |
| GCATAATGTATGCAAGGTCC+GGG | + | chr2_3:32717472-32717491 | None:intergenic | 45.0% | |
| CAGAGCTGACACAAGTTTCA+TGG | - | chr2_3:32718561-32718580 | Msa0288250:intron | 45.0% | |
| GCTGACACAAGTTTCATGGT+TGG | - | chr2_3:32718565-32718584 | Msa0288250:intron | 45.0% | |
| GACACAAGTTTCATGGTTGG+AGG | - | chr2_3:32718568-32718587 | Msa0288250:intron | 45.0% | |
| !! | GTTTCATGGTTGGAGGTATC+TGG | - | chr2_3:32718575-32718594 | Msa0288250:intron | 45.0% |
| GATGTGGAAGTTAAGCCAGA+AGG | - | chr2_3:32718638-32718657 | Msa0288250:intron | 45.0% | |
| TTAAGCCAGAAGGTTTCGGT+TGG | - | chr2_3:32718648-32718667 | Msa0288250:intron | 45.0% | |
| TAAGCCAGAAGGTTTCGGTT+GGG | - | chr2_3:32718649-32718668 | Msa0288250:intron | 45.0% | |
| CATCACCAGTACATCTGTGT+TGG | + | chr2_3:32718678-32718697 | None:intergenic | 45.0% | |
| ! | CAACACAGATGTACTGGTGA+TGG | - | chr2_3:32718676-32718695 | Msa0288250:intron | 45.0% |
| !! | GTACTGGTGATGGCTAAAGT+TGG | - | chr2_3:32718686-32718705 | Msa0288250:intron | 45.0% |
| ! | TGGACTGGAAAATGGAAAGG+AGG | - | chr2_3:32718848-32718867 | Msa0288250:intron | 45.0% |
| ACAAGTGAATGTGCTGGGTG+GGG | + | chr2_3:32717333-32717352 | None:intergenic | 50.0% | |
| CTAACTGAGCTAAGCTCACG+AGG | - | chr2_3:32717502-32717521 | Msa0288250:intron | 50.0% | |
| GGATGGACCAAAAGCGAAGA+TGG | - | chr2_3:32718353-32718372 | Msa0288250:intron | 50.0% | |
| AAGCCAGAAGGTTTCGGTTG+GGG | - | chr2_3:32718650-32718669 | Msa0288250:intron | 50.0% | |
| GGGAACCAACACAGATGTAC+TGG | - | chr2_3:32718670-32718689 | Msa0288250:intron | 50.0% | |
| GGGGAAATGATCCTCGCTAC+TGG | - | chr2_3:32717666-32717685 | Msa0288250:intron | 55.0% | |
| GTTCCCCAACCGAAACCTTC+TGG | + | chr2_3:32718656-32718675 | None:intergenic | 55.0% | |
| ! | GGTGTCTGGGATTCGAACCC+CGG | - | chr2_3:32717451-32717470 | Msa0288250:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 32716402 | 32718907 | 32716402 | ID=Msa0288250;Name=Msa0288250 |
| chr2_3 | mRNA | 32716402 | 32718907 | 32716402 | ID=Msa0288250-mRNA-1;Parent=Msa0288250;Name=Msa0288250-mRNA-1;_AED=0.02;_eAED=0.03;_QI=0|0|0|0.66|0.5|0.33|3|0|144 |
| chr2_3 | exon | 32718901 | 32718907 | 32718901 | ID=Msa0288250-mRNA-1:exon:10877;Parent=Msa0288250-mRNA-1 |
| chr2_3 | exon | 32717610 | 32717682 | 32717610 | ID=Msa0288250-mRNA-1:exon:10876;Parent=Msa0288250-mRNA-1 |
| chr2_3 | exon | 32716402 | 32716756 | 32716402 | ID=Msa0288250-mRNA-1:exon:10875;Parent=Msa0288250-mRNA-1 |
| chr2_3 | CDS | 32718901 | 32718907 | 32718901 | ID=Msa0288250-mRNA-1:cds;Parent=Msa0288250-mRNA-1 |
| chr2_3 | CDS | 32717610 | 32717682 | 32717610 | ID=Msa0288250-mRNA-1:cds;Parent=Msa0288250-mRNA-1 |
| chr2_3 | CDS | 32716402 | 32716756 | 32716402 | ID=Msa0288250-mRNA-1:cds;Parent=Msa0288250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
