Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0288560 | XP_024632301.1 | 82.888 | 187 | 1 | 1 | 1 | 187 | 1 | 156 | 5.25e-104 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0288560 | sp|P49592|NC2B_ARATH | 66.486 | 185 | 29 | 2 | 1 | 183 | 1 | 154 | 1.40e-80 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0288560 | TF | NF-YB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0288560 | Msa0288570 | 0.959995 | 4.645971e-118 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0288560 | MtrunA17_Chr2g0307551 | 82.888 | 187 | 1 | 1 | 1 | 187 | 1 | 156 | 4.83e-108 | 305 |
| Msa0288560 | MtrunA17_Chr4g0062271 | 70.652 | 184 | 23 | 1 | 1 | 184 | 1 | 153 | 3.05e-90 | 260 |
| Msa0288560 | MtrunA17_Chr1g0185911 | 40.449 | 89 | 51 | 1 | 8 | 94 | 26 | 114 | 4.80e-18 | 77.4 |
| Msa0288560 | MtrunA17_Chr4g0076381 | 39.241 | 79 | 48 | 0 | 11 | 89 | 58 | 136 | 6.58e-17 | 75.9 |
| Msa0288560 | MtrunA17_Chr1g0195851 | 37.179 | 78 | 49 | 0 | 12 | 89 | 37 | 114 | 7.66e-17 | 74.7 |
| Msa0288560 | MtrunA17_Chr7g0263601 | 37.500 | 80 | 50 | 0 | 12 | 91 | 27 | 106 | 3.44e-16 | 72.4 |
| Msa0288560 | MtrunA17_Chr1g0191981 | 35.443 | 79 | 51 | 0 | 13 | 91 | 6 | 84 | 5.23e-16 | 70.9 |
| Msa0288560 | MtrunA17_Chr1g0165041 | 33.333 | 81 | 54 | 0 | 11 | 91 | 6 | 86 | 8.52e-16 | 72.0 |
| Msa0288560 | MtrunA17_Chr3g0102351 | 37.179 | 78 | 49 | 0 | 12 | 89 | 28 | 105 | 1.16e-15 | 71.6 |
| Msa0288560 | MtrunA17_Chr5g0446491 | 34.118 | 85 | 56 | 0 | 7 | 91 | 19 | 103 | 2.58e-15 | 70.5 |
| Msa0288560 | MtrunA17_Chr4g0067091 | 37.179 | 78 | 49 | 0 | 12 | 89 | 23 | 100 | 8.69e-15 | 69.7 |
| Msa0288560 | MtrunA17_Chr8g0384451 | 31.818 | 88 | 60 | 0 | 12 | 99 | 41 | 128 | 1.99e-14 | 68.6 |
| Msa0288560 | MtrunA17_Chr2g0290491 | 33.333 | 78 | 52 | 0 | 12 | 89 | 18 | 95 | 5.34e-14 | 66.6 |
| Msa0288560 | MtrunA17_Chr8g0382931 | 32.143 | 84 | 57 | 0 | 5 | 88 | 22 | 105 | 7.08e-14 | 67.0 |
| Msa0288560 | MtrunA17_Chr2g0296321 | 37.179 | 78 | 49 | 0 | 12 | 89 | 67 | 144 | 2.06e-13 | 66.6 |
| Msa0288560 | MtrunA17_Chr4g0076321 | 35.135 | 74 | 48 | 0 | 16 | 89 | 24 | 97 | 6.83e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0288560 | AT5G23090.5 | 66.486 | 185 | 29 | 2 | 1 | 183 | 1 | 154 | 1.42e-81 | 239 |
| Msa0288560 | AT5G23090.2 | 66.486 | 185 | 29 | 2 | 1 | 183 | 1 | 154 | 1.42e-81 | 239 |
| Msa0288560 | AT5G23090.1 | 66.486 | 185 | 29 | 2 | 1 | 183 | 1 | 154 | 1.42e-81 | 239 |
| Msa0288560 | AT5G23090.4 | 65.946 | 185 | 29 | 2 | 1 | 183 | 1 | 153 | 1.24e-80 | 236 |
| Msa0288560 | AT5G08190.1 | 68.786 | 173 | 23 | 1 | 1 | 173 | 1 | 142 | 1.75e-72 | 216 |
| Msa0288560 | AT5G08190.2 | 68.208 | 173 | 23 | 1 | 1 | 173 | 1 | 141 | 1.84e-71 | 214 |
| Msa0288560 | AT5G23090.3 | 59.459 | 185 | 29 | 3 | 1 | 183 | 1 | 141 | 1.54e-67 | 203 |
| Msa0288560 | AT2G38880.11 | 34.653 | 101 | 62 | 2 | 12 | 108 | 22 | 122 | 6.86e-18 | 77.0 |
| Msa0288560 | AT2G38880.8 | 34.653 | 101 | 62 | 2 | 12 | 108 | 22 | 122 | 6.86e-18 | 77.0 |
| Msa0288560 | AT2G38880.4 | 36.471 | 85 | 52 | 1 | 12 | 94 | 22 | 106 | 1.79e-17 | 74.7 |
| Msa0288560 | AT2G38880.7 | 36.471 | 85 | 52 | 1 | 12 | 94 | 22 | 106 | 1.83e-17 | 75.5 |
| Msa0288560 | AT2G38880.2 | 36.471 | 85 | 52 | 1 | 12 | 94 | 22 | 106 | 1.91e-17 | 75.5 |
| Msa0288560 | AT2G38880.1 | 36.471 | 85 | 52 | 1 | 12 | 94 | 22 | 106 | 1.91e-17 | 75.5 |
| Msa0288560 | AT2G38880.5 | 36.471 | 85 | 52 | 1 | 12 | 94 | 22 | 106 | 1.91e-17 | 75.5 |
| Msa0288560 | AT2G38880.3 | 36.471 | 85 | 52 | 1 | 12 | 94 | 22 | 106 | 3.05e-17 | 74.7 |
| Msa0288560 | AT2G37060.2 | 38.750 | 80 | 49 | 0 | 12 | 91 | 31 | 110 | 1.75e-16 | 73.6 |
| Msa0288560 | AT2G37060.3 | 38.750 | 80 | 49 | 0 | 12 | 91 | 31 | 110 | 1.75e-16 | 73.6 |
| Msa0288560 | AT2G37060.1 | 38.750 | 80 | 49 | 0 | 12 | 91 | 31 | 110 | 1.75e-16 | 73.6 |
| Msa0288560 | AT2G38880.9 | 36.471 | 85 | 52 | 1 | 12 | 94 | 22 | 106 | 3.74e-16 | 72.4 |
| Msa0288560 | AT2G38880.10 | 36.471 | 85 | 52 | 1 | 12 | 94 | 22 | 106 | 3.74e-16 | 72.4 |
| Msa0288560 | AT2G38880.6 | 36.471 | 85 | 52 | 1 | 12 | 94 | 22 | 106 | 3.74e-16 | 72.4 |
| Msa0288560 | AT3G53340.5 | 39.744 | 78 | 47 | 0 | 12 | 89 | 30 | 107 | 5.60e-16 | 72.4 |
| Msa0288560 | AT3G53340.1 | 39.744 | 78 | 47 | 0 | 12 | 89 | 30 | 107 | 5.60e-16 | 72.4 |
| Msa0288560 | AT3G53340.4 | 39.744 | 78 | 47 | 0 | 12 | 89 | 30 | 107 | 8.21e-16 | 70.5 |
| Msa0288560 | AT5G47670.2 | 37.975 | 79 | 49 | 0 | 11 | 89 | 29 | 107 | 1.52e-15 | 72.0 |
| Msa0288560 | AT4G14540.1 | 31.818 | 88 | 60 | 0 | 12 | 99 | 22 | 109 | 1.79e-15 | 70.9 |
| Msa0288560 | AT5G47670.1 | 37.037 | 81 | 51 | 0 | 11 | 91 | 58 | 138 | 2.61e-15 | 71.6 |
| Msa0288560 | AT5G47670.3 | 37.037 | 81 | 51 | 0 | 11 | 91 | 58 | 138 | 2.61e-15 | 71.6 |
| Msa0288560 | AT3G53340.3 | 35.227 | 88 | 57 | 0 | 12 | 99 | 30 | 117 | 2.68e-15 | 70.1 |
| Msa0288560 | AT3G53340.2 | 35.227 | 88 | 57 | 0 | 12 | 99 | 30 | 117 | 2.68e-15 | 70.1 |
| Msa0288560 | AT5G47640.1 | 35.897 | 78 | 50 | 0 | 12 | 89 | 28 | 105 | 1.37e-14 | 68.9 |
| Msa0288560 | AT1G21970.1 | 34.568 | 81 | 53 | 0 | 11 | 91 | 59 | 139 | 3.01e-14 | 68.9 |
| Msa0288560 | AT1G09030.1 | 33.750 | 80 | 53 | 0 | 12 | 91 | 4 | 83 | 1.23e-13 | 65.5 |
| Msa0288560 | AT2G13570.1 | 35.065 | 77 | 50 | 0 | 12 | 88 | 37 | 113 | 1.86e-13 | 66.6 |
| Msa0288560 | AT2G47810.1 | 32.895 | 76 | 51 | 0 | 12 | 87 | 52 | 127 | 1.02e-12 | 63.5 |
Find 74 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCCAAGTTGCTTACAATA+TGG | 0.233940 | 2_3:+33849199 | None:intergenic |
| AAGTTAATGTAATTAATTAA+TGG | 0.241152 | 2_3:-33848383 | Msa0288560:three_prime_UTR |
| ATATATCAGGTTCTTGGATT+TGG | 0.252299 | 2_3:-33849672 | Msa0288560:intron |
| GAGCATGTATTGAAAGCTTT+AGG | 0.252682 | 2_3:-33850472 | Msa0288560:CDS |
| AAGTTTAGAGAACTAACTTT+AGG | 0.270141 | 2_3:-33848552 | Msa0288560:exon |
| TTATTTATATATCAGGTTCT+TGG | 0.293604 | 2_3:-33849678 | Msa0288560:intron |
| ACTAATTGAATTTGAAGATC+TGG | 0.306860 | 2_3:+33851821 | None:intergenic |
| TGAGAGGTCTCTGTATCTTT+AGG | 0.314082 | 2_3:+33849151 | None:intergenic |
| TAATTATAATAAACTATAAT+AGG | 0.328224 | 2_3:+33848238 | None:intergenic |
| CTGCAGCAAGACTCTATAAA+AGG | 0.346677 | 2_3:-33848704 | Msa0288560:intron |
| GAACACTCTTTCTCGTTGTT+TGG | 0.347353 | 2_3:-33851953 | Msa0288560:five_prime_UTR |
| AACATTCAATTAACAAATCC+TGG | 0.352577 | 2_3:+33851425 | None:intergenic |
| AGTTTAGAGAACTAACTTTA+GGG | 0.366270 | 2_3:-33848551 | Msa0288560:exon |
| AGCATGTATTGAAAGCTTTA+GGG | 0.375222 | 2_3:-33850471 | Msa0288560:CDS |
| TCTAAACTTTGGTCAGCATC+TGG | 0.377371 | 2_3:+33848566 | None:intergenic |
| TGCCAAGTTGCTTACAATAT+GGG | 0.382608 | 2_3:+33849200 | None:intergenic |
| TTGGTCAGCATCTGGTTGAT+TGG | 0.384189 | 2_3:+33848574 | None:intergenic |
| AGACTCACCGATTGAATTTG+AGG | 0.392146 | 2_3:+33851768 | None:intergenic |
| TATCACTAACAGAACACAAA+TGG | 0.404771 | 2_3:+33848415 | None:intergenic |
| AAAGTTAGTTCTCTAAACTT+TGG | 0.415113 | 2_3:+33848555 | None:intergenic |
| TAATACAAAGATGGAGCCTA+TGG | 0.442593 | 2_3:-33851651 | Msa0288560:exon |
| TTCTCATCCTCAAATTCAAT+CGG | 0.446802 | 2_3:-33851775 | Msa0288560:intron |
| ATCACTAACAGAACACAAAT+GGG | 0.449836 | 2_3:+33848416 | None:intergenic |
| CTAATTGAATTTGAAGATCT+GGG | 0.451944 | 2_3:+33851822 | None:intergenic |
| CTCTGCTAATGCTTGTTCCT+CGG | 0.457821 | 2_3:+33848652 | None:intergenic |
| CTCAGCTGCACCGCTCCACT+TGG | 0.465501 | 2_3:+33848679 | None:intergenic |
| CTTTAGGTTGCCTTGCCCAC+AGG | 0.478226 | 2_3:+33849167 | None:intergenic |
| AAGAGAAGATGAAGAGATGA+GGG | 0.481364 | 2_3:+33851892 | None:intergenic |
| AAAGCTTTCAATACATGCTC+AGG | 0.483166 | 2_3:+33850475 | None:intergenic |
| TCTCTTGCAACACGGACATC+AGG | 0.499892 | 2_3:+33851451 | None:intergenic |
| GAGGCACGTGCTAGAATGAA+TGG | 0.500006 | 2_3:-33848611 | Msa0288560:CDS |
| GACCTCTCAGTGTGAGGTCA+AGG | 0.512725 | 2_3:-33849137 | Msa0288560:intron |
| TAAATTATGTCCTGTGGGCA+AGG | 0.512980 | 2_3:-33849177 | Msa0288560:CDS |
| TACGTACTGGATGGATAAGA+AGG | 0.517573 | 2_3:+33851928 | None:intergenic |
| GAAGATGAAGAGATGAGGGT+TGG | 0.517884 | 2_3:+33851896 | None:intergenic |
| TTCCCATATTGTAAGCAACT+TGG | 0.519922 | 2_3:-33849202 | Msa0288560:CDS |
| AAACTCATTCACTACTGTGC+TGG | 0.521490 | 2_3:-33848456 | Msa0288560:three_prime_UTR |
| TATGTAACAGAGAGGAAAGA+AGG | 0.521621 | 2_3:-33850507 | Msa0288560:CDS |
| GAAGATGCTTCGCTACCTAA+AGG | 0.522042 | 2_3:-33851608 | Msa0288560:intron |
| AAAGAGAAGATGAAGAGATG+AGG | 0.525840 | 2_3:+33851891 | None:intergenic |
| TTGTTAATTGAATGTTGTGT+AGG | 0.530693 | 2_3:-33851418 | Msa0288560:intron |
| TCATAATAATAATACAAAGA+TGG | 0.534014 | 2_3:-33851660 | Msa0288560:exon |
| AAGCATTAGCAGAGCAGCAA+AGG | 0.547129 | 2_3:-33848643 | Msa0288560:CDS |
| GATTTAGCAACAATATCCAT+AGG | 0.550892 | 2_3:+33851635 | None:intergenic |
| CATTTGACTCTGATGAGACG+AGG | 0.555057 | 2_3:+33850533 | None:intergenic |
| AATGGGGAGCACATCTACAT+AGG | 0.563367 | 2_3:+33848433 | None:intergenic |
| TTGGCATAAATTATGTCCTG+TGG | 0.570623 | 2_3:-33849183 | Msa0288560:CDS |
| CATATAATTCTAAATAGACA+AGG | 0.573633 | 2_3:+33848347 | None:intergenic |
| ATCTGGTTGATTGGAAGTAA+CGG | 0.576071 | 2_3:+33848583 | None:intergenic |
| TGGATTTGGCGAGTACATTG+AGG | 0.592411 | 2_3:-33849658 | Msa0288560:CDS |
| GGATATTGTTGCTAAATCAA+AGG | 0.593602 | 2_3:-33851630 | Msa0288560:CDS |
| ACATTCAATTAACAAATCCT+GGG | 0.595298 | 2_3:+33851426 | None:intergenic |
| TGGCATAAATTATGTCCTGT+GGG | 0.610405 | 2_3:-33849182 | Msa0288560:CDS |
| AATCGAGCTAAATTACCCAC+AGG | 0.617452 | 2_3:+33848486 | None:intergenic |
| GCATGTATTGAAAGCTTTAG+GGG | 0.617694 | 2_3:-33850470 | Msa0288560:intron |
| AGCATATGAACAGCACAAGA+TGG | 0.618530 | 2_3:-33849625 | Msa0288560:CDS |
| CCTGGGTATCTCTTGCAACA+CGG | 0.619026 | 2_3:+33851443 | None:intergenic |
| CCGTGTTGCAAGAGATACCC+AGG | 0.621479 | 2_3:-33851443 | Msa0288560:CDS |
| CATCTCTGACTCTTACCTGT+GGG | 0.621607 | 2_3:-33848501 | Msa0288560:three_prime_UTR |
| GCATCTCTGACTCTTACCTG+TGG | 0.621691 | 2_3:-33848502 | Msa0288560:three_prime_UTR |
| CACCTTGACCTCACACTGAG+AGG | 0.628357 | 2_3:+33849135 | None:intergenic |
| CTTGCAACACGGACATCAGG+TGG | 0.632584 | 2_3:+33851454 | None:intergenic |
| TACAGAGACCTCTCAGTGTG+AGG | 0.636220 | 2_3:-33849143 | Msa0288560:CDS |
| GCAGCAAAGGATGTTTGCAG+AGG | 0.645184 | 2_3:-33848630 | Msa0288560:CDS |
| ACTCTATAAAAGGTGCCAAG+TGG | 0.646573 | 2_3:-33848694 | Msa0288560:CDS |
| ATAAAAGGTGCCAAGTGGAG+CGG | 0.655175 | 2_3:-33848689 | Msa0288560:CDS |
| ATATAATTCTAAATAGACAA+GGG | 0.661018 | 2_3:+33848348 | None:intergenic |
| GCACGTGCTAGAATGAATGG+AGG | 0.666011 | 2_3:-33848608 | Msa0288560:CDS |
| CACGTGCTAGAATGAATGGA+GGG | 0.684842 | 2_3:-33848607 | Msa0288560:CDS |
| AAATGAAGTATGTAACAGAG+AGG | 0.704349 | 2_3:-33850515 | Msa0288560:CDS |
| CGGTGCAGCTGAGATGACCG+AGG | 0.707136 | 2_3:-33848669 | Msa0288560:CDS |
| ACAGCACAAGATGGAGACAG+TGG | 0.723145 | 2_3:-33849616 | Msa0288560:intron |
| ATTGAATTTGAAGATCTGGG+AGG | 0.725458 | 2_3:+33851825 | None:intergenic |
| TCACTAACAGAACACAAATG+GGG | 0.727901 | 2_3:+33848417 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTTTTTTAAAATAA+AGG | - | chr2_3:33850130-33850149 | Msa0288560:intron | 0.0% |
| !!! | TTATTTTTTTTTAAAATAAA+GGG | - | chr2_3:33850131-33850150 | Msa0288560:intron | 0.0% |
| !! | AAAATAAAAATTATACCTTT+AGG | + | chr2_3:33848642-33848661 | None:intergenic | 10.0% |
| !! | CATATTATTAATTAATTAAC+TGG | - | chr2_3:33851423-33851442 | Msa0288560:CDS | 10.0% |
| !! | AAGTTAATGTAATTAATTAA+TGG | - | chr2_3:33851849-33851868 | Msa0288560:five_prime_UTR | 10.0% |
| !! | TCATAATAATAATACAAAGA+TGG | - | chr2_3:33848572-33848591 | Msa0288560:CDS | 15.0% |
| !! | AAATAATAGATAAATTATGC+AGG | + | chr2_3:33849148-33849167 | None:intergenic | 15.0% |
| !! | CAATCAAATTAAAATTGAAA+AGG | + | chr2_3:33849836-33849855 | None:intergenic | 15.0% |
| !! | AAAACAAATGATAGTTAATA+TGG | + | chr2_3:33850020-33850039 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTAAAATAAAGGG+AGG | - | chr2_3:33850134-33850153 | Msa0288560:intron | 15.0% |
| !!! | TTTTTTTTAAAATAAAGGGA+GGG | - | chr2_3:33850135-33850154 | Msa0288560:intron | 15.0% |
| !! | GTCATATTTATTTATATATC+AGG | - | chr2_3:33850547-33850566 | Msa0288560:intron | 15.0% |
| !!! | TTATTTTCAAATAATACTAG+TGG | - | chr2_3:33850938-33850957 | Msa0288560:intron | 15.0% |
| !! | ATTGAAATCTTTATGATTTA+TGG | - | chr2_3:33851227-33851246 | Msa0288560:intron | 15.0% |
| !! | ATATAATTCTAAATAGACAA+GGG | + | chr2_3:33851887-33851906 | None:intergenic | 15.0% |
| !! | AATTATGGCTTCATTAATTA+TGG | + | chr2_3:33849006-33849025 | None:intergenic | 20.0% |
| !! | ATCAAAATTTGGAGATAAAA+GGG | + | chr2_3:33849807-33849826 | None:intergenic | 20.0% |
| !! | ATATTGTAATCAATTGTCAA+TGG | + | chr2_3:33850317-33850336 | None:intergenic | 20.0% |
| !!! | GTTTAGAATTTTGCAATAAA+AGG | - | chr2_3:33850394-33850413 | Msa0288560:intron | 20.0% |
| !! | TTATTTATATATCAGGTTCT+TGG | - | chr2_3:33850554-33850573 | Msa0288560:intron | 20.0% |
| !!! | ATTGATAACTCAAACAATTT+GGG | + | chr2_3:33850864-33850883 | None:intergenic | 20.0% |
| !!! | TATTGATAACTCAAACAATT+TGG | + | chr2_3:33850865-33850884 | None:intergenic | 20.0% |
| !! | CATATAATTCTAAATAGACA+AGG | + | chr2_3:33851888-33851907 | None:intergenic | 20.0% |
| ! | CTAATTGAATTTGAAGATCT+GGG | + | chr2_3:33848413-33848432 | None:intergenic | 25.0% |
| ! | ACTAATTGAATTTGAAGATC+TGG | + | chr2_3:33848414-33848433 | None:intergenic | 25.0% |
| ! | AATTTGAGGATGAGAAAAAA+GGG | + | chr2_3:33848453-33848472 | None:intergenic | 25.0% |
| ! | ACATTCAATTAACAAATCCT+GGG | + | chr2_3:33848809-33848828 | None:intergenic | 25.0% |
| ! | AACATTCAATTAACAAATCC+TGG | + | chr2_3:33848810-33848829 | None:intergenic | 25.0% |
| ! | TTGTTAATTGAATGTTGTGT+AGG | - | chr2_3:33848814-33848833 | Msa0288560:intron | 25.0% |
| !! | AAAAATCTGAAACAAACCAA+GGG | + | chr2_3:33848959-33848978 | None:intergenic | 25.0% |
| !! | AAAAAATCTGAAACAAACCA+AGG | + | chr2_3:33848960-33848979 | None:intergenic | 25.0% |
| ! | TCAAACAAAATGGATGTATT+TGG | - | chr2_3:33849365-33849384 | Msa0288560:intron | 25.0% |
| !! | GATGTATTTGGTTCAAAATT+TGG | - | chr2_3:33849377-33849396 | Msa0288560:intron | 25.0% |
| !!! | TCAAAGAAAGTTGATGTATT+TGG | + | chr2_3:33849404-33849423 | None:intergenic | 25.0% |
| !! | CTTTTGCGTATATTTTGTAA+CGG | - | chr2_3:33849428-33849447 | Msa0288560:intron | 25.0% |
| ! | GAAGTATATCATATCATCTA+AGG | - | chr2_3:33849453-33849472 | Msa0288560:intron | 25.0% |
| ! | TCTATATCTCAACTATAATG+AGG | - | chr2_3:33849563-33849582 | Msa0288560:intron | 25.0% |
| !! | GATCTAAAACAACACATTTA+TGG | + | chr2_3:33849593-33849612 | None:intergenic | 25.0% |
| ! | CATGAATCATATATTGAAAC+TGG | + | chr2_3:33849615-33849634 | None:intergenic | 25.0% |
| ! | CAGTTTCAATATATGATTCA+TGG | - | chr2_3:33849613-33849632 | Msa0288560:intron | 25.0% |
| ! | CATCAAAATTTGGAGATAAA+AGG | + | chr2_3:33849808-33849827 | None:intergenic | 25.0% |
| !!! | TTTATCTCCAAATTTTGATG+TGG | - | chr2_3:33849808-33849827 | Msa0288560:intron | 25.0% |
| !!! | ATTTTTTTTTAAACCCACCA+CGG | - | chr2_3:33850286-33850305 | Msa0288560:intron | 25.0% |
| !!! | ATGTTTTATTTTGTTGTGTC+TGG | - | chr2_3:33850365-33850384 | Msa0288560:intron | 25.0% |
| !!! | TGTTTTATTTTGTTGTGTCT+GGG | - | chr2_3:33850366-33850385 | Msa0288560:intron | 25.0% |
| ! | TGTATTTCGAAAACTTAAAC+TGG | + | chr2_3:33850435-33850454 | None:intergenic | 25.0% |
| ! | AGATAACATGACATAATTTG+TGG | - | chr2_3:33850692-33850711 | Msa0288560:intron | 25.0% |
| ! | ATCCATTGTGGATATATTAT+AGG | - | chr2_3:33850775-33850794 | Msa0288560:intron | 25.0% |
| ! | TAGAGATGAATTCTGTTAAT+TGG | - | chr2_3:33850824-33850843 | Msa0288560:intron | 25.0% |
| ! | AGAGATGAATTCTGTTAATT+GGG | - | chr2_3:33850825-33850844 | Msa0288560:intron | 25.0% |
| !!! | GAAAATATTAAAAGTACCCT+TGG | - | chr2_3:33850889-33850908 | Msa0288560:intron | 25.0% |
| !! | CTTTCTGAATACTGTTTTAT+GGG | + | chr2_3:33851144-33851163 | None:intergenic | 25.0% |
| ! | TTTATGATTTATGGATCTCT+GGG | - | chr2_3:33851236-33851255 | Msa0288560:intron | 25.0% |
| !! | AAAGTTAGTTCTCTAAACTT+TGG | + | chr2_3:33851680-33851699 | None:intergenic | 25.0% |
| ! | AAGTTTAGAGAACTAACTTT+AGG | - | chr2_3:33851680-33851699 | Msa0288560:intron | 25.0% |
| ! | AGTTTAGAGAACTAACTTTA+GGG | - | chr2_3:33851681-33851700 | Msa0288560:intron | 25.0% |
| !!! | TCTTTATTTTCTTGAAGCAT+AGG | - | chr2_3:33851704-33851723 | Msa0288560:intron | 25.0% |
| GAATTTGAGGATGAGAAAAA+AGG | + | chr2_3:33848454-33848473 | None:intergenic | 30.0% | |
| TTCTCATCCTCAAATTCAAT+CGG | - | chr2_3:33848457-33848476 | Msa0288560:three_prime_UTR | 30.0% | |
| GATTTAGCAACAATATCCAT+AGG | + | chr2_3:33848600-33848619 | None:intergenic | 30.0% | |
| GGATATTGTTGCTAAATCAA+AGG | - | chr2_3:33848602-33848621 | Msa0288560:CDS | 30.0% | |
| TAGTGATTAATAATTGCCCT+TGG | - | chr2_3:33848940-33848959 | Msa0288560:intron | 30.0% | |
| !! | AAGCCATAATTGATTTTGTG+CGG | - | chr2_3:33849015-33849034 | Msa0288560:intron | 30.0% |
| TTATGAACACCACCAAAAAT+CGG | + | chr2_3:33849079-33849098 | None:intergenic | 30.0% | |
| !!! | TTTTGGTGGTGTTCATAATT+CGG | - | chr2_3:33849081-33849100 | Msa0288560:intron | 30.0% |
| ATTGATCTCAAAACATGTGA+CGG | + | chr2_3:33849224-33849243 | None:intergenic | 30.0% | |
| ! | CATATCATCTAAGGTGTAAA+TGG | - | chr2_3:33849462-33849481 | Msa0288560:intron | 30.0% |
| AAATGAAGTATGTAACAGAG+AGG | - | chr2_3:33849717-33849736 | Msa0288560:intron | 30.0% | |
| AGCATGTATTGAAAGCTTTA+GGG | - | chr2_3:33849761-33849780 | Msa0288560:intron | 30.0% | |
| AATTTGGAGATAAAAGGGTT+TGG | + | chr2_3:33849802-33849821 | None:intergenic | 30.0% | |
| AAAGGATCCACATCAAAATT+TGG | + | chr2_3:33849818-33849837 | None:intergenic | 30.0% | |
| ! | TGATTTGTATCTTTCTCATG+TGG | - | chr2_3:33849894-33849913 | Msa0288560:intron | 30.0% |
| CAAGAATAACACCATTGAAA+AGG | + | chr2_3:33849922-33849941 | None:intergenic | 30.0% | |
| ! | TTTTTCTCTGCATTGTAGTT+AGG | - | chr2_3:33849943-33849962 | Msa0288560:intron | 30.0% |
| TGCATTGTAGTTAGGTTTAA+TGG | - | chr2_3:33849951-33849970 | Msa0288560:intron | 30.0% | |
| ! | TAGATTAGCTAGTATCCTTT+AGG | - | chr2_3:33849991-33850010 | Msa0288560:intron | 30.0% |
| ! | AGATTAGCTAGTATCCTTTA+GGG | - | chr2_3:33849992-33850011 | Msa0288560:intron | 30.0% |
| ATCTTAATGATACGATGTAG+CGG | - | chr2_3:33850046-33850065 | Msa0288560:intron | 30.0% | |
| ! | TTTAAAATAAAGGGAGGGAA+AGG | - | chr2_3:33850140-33850159 | Msa0288560:intron | 30.0% |
| ACGAATGCTTATATAACACA+AGG | + | chr2_3:33850472-33850491 | None:intergenic | 30.0% | |
| ATATATCAGGTTCTTGGATT+TGG | - | chr2_3:33850560-33850579 | Msa0288560:intron | 30.0% | |
| TGCCTATAATATATCCACAA+TGG | + | chr2_3:33850780-33850799 | None:intergenic | 30.0% | |
| ATTCATCTCTAACAATGCAA+GGG | + | chr2_3:33850815-33850834 | None:intergenic | 30.0% | |
| AATTCATCTCTAACAATGCA+AGG | + | chr2_3:33850816-33850835 | None:intergenic | 30.0% | |
| !! | ATCAGATAAAAGCATTGAAC+TGG | + | chr2_3:33850919-33850938 | None:intergenic | 30.0% |
| !!! | AATGCTGTTTTAACCAGTTT+AGG | - | chr2_3:33851007-33851026 | Msa0288560:intron | 30.0% |
| ! | GCTTTCTGAATACTGTTTTA+TGG | + | chr2_3:33851145-33851164 | None:intergenic | 30.0% |
| TATTCAGAAAGCAAATAGAC+TGG | - | chr2_3:33851153-33851172 | Msa0288560:intron | 30.0% | |
| CTTTATGATTTATGGATCTC+TGG | - | chr2_3:33851235-33851254 | Msa0288560:intron | 30.0% | |
| ! | CAGTTCAATTCTGTTGTTTA+TGG | - | chr2_3:33851463-33851482 | Msa0288560:CDS | 30.0% |
| ! | TGTTGTTTATGGATTGACTT+TGG | - | chr2_3:33851474-33851493 | Msa0288560:CDS | 30.0% |
| ATCACTAACAGAACACAAAT+GGG | + | chr2_3:33851819-33851838 | None:intergenic | 30.0% | |
| TATCACTAACAGAACACAAA+TGG | + | chr2_3:33851820-33851839 | None:intergenic | 30.0% | |
| AAGAGAAGATGAAGAGATGA+GGG | + | chr2_3:33848343-33848362 | None:intergenic | 35.0% | |
| AAAGAGAAGATGAAGAGATG+AGG | + | chr2_3:33848344-33848363 | None:intergenic | 35.0% | |
| ATTGAATTTGAAGATCTGGG+AGG | + | chr2_3:33848410-33848429 | None:intergenic | 35.0% | |
| TAATACAAAGATGGAGCCTA+TGG | - | chr2_3:33848581-33848600 | Msa0288560:CDS | 35.0% | |
| AATTGAATGTTGTGTAGGTC+AGG | - | chr2_3:33848819-33848838 | Msa0288560:intron | 35.0% | |
| !! | TATGGTGTTATCACCTATGT+TGG | + | chr2_3:33849041-33849060 | None:intergenic | 35.0% |
| !!! | TTATCGCATTTGCCGATTTT+TGG | - | chr2_3:33849064-33849083 | Msa0288560:intron | 35.0% |
| TTGATCTCAAAACATGTGAC+GGG | + | chr2_3:33849223-33849242 | None:intergenic | 35.0% | |
| ! | TCTTGATTTGAAGCCGATAA+AGG | - | chr2_3:33849294-33849313 | Msa0288560:intron | 35.0% |
| GTCATTAGGTCAACCTTTAT+CGG | + | chr2_3:33849310-33849329 | None:intergenic | 35.0% | |
| ! | GAAAATGTAAGCAAAAGTGC+AGG | - | chr2_3:33849342-33849361 | Msa0288560:intron | 35.0% |
| AAAGTGCAGGTCAAACAAAA+TGG | - | chr2_3:33849355-33849374 | Msa0288560:intron | 35.0% | |
| ! | TTGCGTATATTTTGTAACGG+AGG | - | chr2_3:33849431-33849450 | Msa0288560:intron | 35.0% |
| TATGTAACAGAGAGGAAAGA+AGG | - | chr2_3:33849725-33849744 | Msa0288560:intron | 35.0% | |
| AAAGCTTTCAATACATGCTC+AGG | + | chr2_3:33849760-33849779 | None:intergenic | 35.0% | |
| GAGCATGTATTGAAAGCTTT+AGG | - | chr2_3:33849760-33849779 | Msa0288560:intron | 35.0% | |
| ! | GCATGTATTGAAAGCTTTAG+GGG | - | chr2_3:33849762-33849781 | Msa0288560:intron | 35.0% |
| TAGTTAATATGGCTCCCTAA+AGG | + | chr2_3:33850009-33850028 | None:intergenic | 35.0% | |
| AACACCTAAATGCAAAGAGT+GGG | + | chr2_3:33850112-33850131 | None:intergenic | 35.0% | |
| AAACACCTAAATGCAAAGAG+TGG | + | chr2_3:33850113-33850132 | None:intergenic | 35.0% | |
| ATGTTGTTAATGCACCTAGA+GGG | + | chr2_3:33850199-33850218 | None:intergenic | 35.0% | |
| TATGTTGTTAATGCACCTAG+AGG | + | chr2_3:33850200-33850219 | None:intergenic | 35.0% | |
| AACAACATACTAATCCCTCT+AGG | - | chr2_3:33850211-33850230 | Msa0288560:intron | 35.0% | |
| CAAGCAATTCAAAATGCACA+TGG | + | chr2_3:33850663-33850682 | None:intergenic | 35.0% | |
| TGAGAGGTCTTTGTATCTTA+AGG | + | chr2_3:33850734-33850753 | None:intergenic | 35.0% | |
| TACAAAGACCTCTCAATTTG+AGG | - | chr2_3:33850739-33850758 | Msa0288560:intron | 35.0% | |
| GTGGATATATTATAGGCACT+AGG | - | chr2_3:33850782-33850801 | Msa0288560:intron | 35.0% | |
| TAGGATCTATGTCTGTCTAA+GGG | - | chr2_3:33850973-33850992 | Msa0288560:intron | 35.0% | |
| TACAATATGGGAACCTAAAC+TGG | + | chr2_3:33851023-33851042 | None:intergenic | 35.0% | |
| TTCCCATATTGTAAGCAACT+TGG | - | chr2_3:33851030-33851049 | Msa0288560:intron | 35.0% | |
| TGCCAAGTTGCTTACAATAT+GGG | + | chr2_3:33851035-33851054 | None:intergenic | 35.0% | |
| ATGCCAAGTTGCTTACAATA+TGG | + | chr2_3:33851036-33851055 | None:intergenic | 35.0% | |
| TTGGCATAAATTATGTCCTG+TGG | - | chr2_3:33851049-33851068 | Msa0288560:intron | 35.0% | |
| TGGCATAAATTATGTCCTGT+GGG | - | chr2_3:33851050-33851069 | Msa0288560:intron | 35.0% | |
| GTGATCATATCCATTGTAGA+AGG | - | chr2_3:33851117-33851136 | Msa0288560:intron | 35.0% | |
| ! | TTTTATGGGTCCTTCTACAA+TGG | + | chr2_3:33851130-33851149 | None:intergenic | 35.0% |
| ! | TTTTATAGAGTCTTGCTGCA+GGG | + | chr2_3:33851529-33851548 | None:intergenic | 35.0% |
| ATCTGGTTGATTGGAAGTAA+CGG | + | chr2_3:33851652-33851671 | None:intergenic | 35.0% | |
| TCACTAACAGAACACAAATG+GGG | + | chr2_3:33851818-33851837 | None:intergenic | 35.0% | |
| GAACACTCTTTCTCGTTGTT+TGG | - | chr2_3:33848279-33848298 | Msa0288560:three_prime_UTR | 40.0% | |
| TACGTACTGGATGGATAAGA+AGG | + | chr2_3:33848307-33848326 | None:intergenic | 40.0% | |
| ! | TGATGCTTTTACGTACTGGA+TGG | + | chr2_3:33848316-33848335 | None:intergenic | 40.0% |
| !!! | TTGGTGATGCTTTTACGTAC+TGG | + | chr2_3:33848320-33848339 | None:intergenic | 40.0% |
| ! | AGACTCACCGATTGAATTTG+AGG | + | chr2_3:33848467-33848486 | None:intergenic | 40.0% |
| TGGCCGCACAAAATCAATTA+TGG | + | chr2_3:33849021-33849040 | None:intergenic | 40.0% | |
| CGGCAAATGCGATAAACTTA+TGG | + | chr2_3:33849059-33849078 | None:intergenic | 40.0% | |
| ! | GCTTACATTTTCGTAACCGA+GGG | + | chr2_3:33849334-33849353 | None:intergenic | 40.0% |
| ! | TGCTTACATTTTCGTAACCG+AGG | + | chr2_3:33849335-33849354 | None:intergenic | 40.0% |
| TATATTATTTGCCCTCCCCT+TGG | - | chr2_3:33849858-33849877 | Msa0288560:intron | 40.0% | |
| TCAATGCACAGAACTTCCAA+GGG | + | chr2_3:33849877-33849896 | None:intergenic | 40.0% | |
| ATCAATGCACAGAACTTCCA+AGG | + | chr2_3:33849878-33849897 | None:intergenic | 40.0% | |
| ! | CTCATGTGGATCCTTTTCAA+TGG | - | chr2_3:33849908-33849927 | Msa0288560:intron | 40.0% |
| GAATCCCACTCTTTGCATTT+AGG | - | chr2_3:33850105-33850124 | Msa0288560:intron | 40.0% | |
| TGTTGTTAATGCACCTAGAG+GGG | + | chr2_3:33850198-33850217 | None:intergenic | 40.0% | |
| TTGACTATGATGCACCTAGA+GGG | + | chr2_3:33850228-33850247 | None:intergenic | 40.0% | |
| ATTGACTATGATGCACCTAG+AGG | + | chr2_3:33850229-33850248 | None:intergenic | 40.0% | |
| !!! | TTTTTTTAAACCCACCACGG+AGG | - | chr2_3:33850289-33850308 | Msa0288560:intron | 40.0% |
| AGCATATGAACAGCACAAGA+TGG | - | chr2_3:33850607-33850626 | Msa0288560:intron | 40.0% | |
| ! | ATGACATAATTTGTGGCCTG+TGG | - | chr2_3:33850699-33850718 | Msa0288560:intron | 40.0% |
| ! | TGACATAATTTGTGGCCTGT+GGG | - | chr2_3:33850700-33850719 | Msa0288560:intron | 40.0% |
| CTAGTGGAAGCTGAATTTCT+AGG | - | chr2_3:33850954-33850973 | Msa0288560:intron | 40.0% | |
| CTAGGATCTATGTCTGTCTA+AGG | - | chr2_3:33850972-33850991 | Msa0288560:intron | 40.0% | |
| TAAATTATGTCCTGTGGGCA+AGG | - | chr2_3:33851055-33851074 | Msa0288560:intron | 40.0% | |
| TGAGAGGTCTCTGTATCTTT+AGG | + | chr2_3:33851084-33851103 | None:intergenic | 40.0% | |
| AGAAAGCAAATAGACTGGAC+AGG | - | chr2_3:33851158-33851177 | Msa0288560:intron | 40.0% | |
| CAATCAAAGAACCCACAGTA+AGG | + | chr2_3:33851202-33851221 | None:intergenic | 40.0% | |
| CTTACTGTGGGTTCTTTGAT+TGG | - | chr2_3:33851200-33851219 | Msa0288560:intron | 40.0% | |
| ! | CTTTTATAGAGTCTTGCTGC+AGG | + | chr2_3:33851530-33851549 | None:intergenic | 40.0% |
| CTGCAGCAAGACTCTATAAA+AGG | - | chr2_3:33851528-33851547 | Msa0288560:intron | 40.0% | |
| !! | ACTCTATAAAAGGTGCCAAG+TGG | - | chr2_3:33851538-33851557 | Msa0288560:intron | 40.0% |
| TCTAAACTTTGGTCAGCATC+TGG | + | chr2_3:33851669-33851688 | None:intergenic | 40.0% | |
| AATCGAGCTAAATTACCCAC+AGG | + | chr2_3:33851749-33851768 | None:intergenic | 40.0% | |
| AAACTCATTCACTACTGTGC+TGG | - | chr2_3:33851776-33851795 | Msa0288560:five_prime_UTR | 40.0% | |
| GAAGATGAAGAGATGAGGGT+TGG | + | chr2_3:33848339-33848358 | None:intergenic | 45.0% | |
| GAAGATGCTTCGCTACCTAA+AGG | - | chr2_3:33848624-33848643 | Msa0288560:CDS | 45.0% | |
| ! | TGATTTTGTGCGGCCAACAT+AGG | - | chr2_3:33849025-33849044 | Msa0288560:intron | 45.0% |
| !!! | TCGCATTTGCCGATTTTTGG+TGG | - | chr2_3:33849067-33849086 | Msa0288560:intron | 45.0% |
| CTTCTTGTTCCTGGAAGACA+CGG | - | chr2_3:33849268-33849287 | Msa0288560:intron | 45.0% | |
| CATTTGACTCTGATGAGACG+AGG | + | chr2_3:33849702-33849721 | None:intergenic | 45.0% | |
| CAATGCACAGAACTTCCAAG+GGG | + | chr2_3:33849876-33849895 | None:intergenic | 45.0% | |
| TTTAATGGCCATCTGTGCAG+TGG | - | chr2_3:33849966-33849985 | Msa0288560:intron | 45.0% | |
| ACAAACACTATTGCGAGAGC+AGG | - | chr2_3:33850077-33850096 | Msa0288560:intron | 45.0% | |
| CAAACACTATTGCGAGAGCA+GGG | - | chr2_3:33850078-33850097 | Msa0288560:intron | 45.0% | |
| AGTCAATCATGAACCCCTCT+AGG | - | chr2_3:33850182-33850201 | Msa0288560:intron | 45.0% | |
| AGTCAATCATGAACCCCTCT+AGG | - | chr2_3:33850182-33850201 | Msa0288560:intron | 45.0% | |
| CATTCTGAATGCACCTAGAG+GGG | + | chr2_3:33850258-33850277 | None:intergenic | 45.0% | |
| CCATTCTGAATGCACCTAGA+GGG | + | chr2_3:33850259-33850278 | None:intergenic | 45.0% | |
| TGGATTTGGCGAGTACATTG+AGG | - | chr2_3:33850574-33850593 | Msa0288560:intron | 45.0% | |
| ! | ACCTCTCAATTTGAGGTCCA+GGG | - | chr2_3:33850746-33850765 | Msa0288560:intron | 45.0% |
| ! | GCATTGAACTGGTTCACCAA+GGG | + | chr2_3:33850908-33850927 | None:intergenic | 45.0% |
| ! | AGCATTGAACTGGTTCACCA+AGG | + | chr2_3:33850909-33850928 | None:intergenic | 45.0% |
| GTAAGGTTAAGCCGCTCATT+AGG | + | chr2_3:33851185-33851204 | None:intergenic | 45.0% | |
| ! | TGGATCTCTGGGAGTTTGTA+TGG | - | chr2_3:33851247-33851266 | Msa0288560:intron | 45.0% |
| ! | ATATGAGCCCTGCTGCTTAT+GGG | + | chr2_3:33851408-33851427 | None:intergenic | 45.0% |
| ! | AATATGAGCCCTGCTGCTTA+TGG | + | chr2_3:33851409-33851428 | None:intergenic | 45.0% |
| !! | ATAAAAGGTGCCAAGTGGAG+CGG | - | chr2_3:33851543-33851562 | Msa0288560:intron | 45.0% |
| CTCTGCTAATGCTTGTTCCT+CGG | + | chr2_3:33851583-33851602 | None:intergenic | 45.0% | |
| AAGCATTAGCAGAGCAGCAA+AGG | - | chr2_3:33851589-33851608 | Msa0288560:intron | 45.0% | |
| CACGTGCTAGAATGAATGGA+GGG | - | chr2_3:33851625-33851644 | Msa0288560:CDS | 45.0% | |
| TTGGTCAGCATCTGGTTGAT+TGG | + | chr2_3:33851661-33851680 | None:intergenic | 45.0% | |
| CATCTCTGACTCTTACCTGT+GGG | - | chr2_3:33851731-33851750 | Msa0288560:intron | 45.0% | |
| ! | AATGGGGAGCACATCTACAT+AGG | + | chr2_3:33851802-33851821 | None:intergenic | 45.0% |
| !!! | TTTTATTTTTTTTAATTTGA+TGG | - | chr2_3:33848851-33848870 | Msa0288560:intron | 5.0% |
| !! | TAATTATAATAAACTATAAT+AGG | + | chr2_3:33851997-33852016 | None:intergenic | 5.0% |
| TCTCTTGCAACACGGACATC+AGG | + | chr2_3:33848784-33848803 | None:intergenic | 50.0% | |
| CCTGGGTATCTCTTGCAACA+CGG | + | chr2_3:33848792-33848811 | None:intergenic | 50.0% | |
| !! | TCTCAAAACATGTGACGGGC+AGG | + | chr2_3:33849219-33849238 | None:intergenic | 50.0% |
| TGCTAGTCGCTTCTTGTTCC+TGG | - | chr2_3:33849259-33849278 | Msa0288560:intron | 50.0% | |
| TCAAGACATCCGTGTCTTCC+AGG | + | chr2_3:33849280-33849299 | None:intergenic | 50.0% | |
| GGTTGACCTAATGACTCCCT+CGG | - | chr2_3:33849315-33849334 | Msa0288560:intron | 50.0% | |
| TCGTAACCGAGGGAGTCATT+AGG | + | chr2_3:33849324-33849343 | None:intergenic | 50.0% | |
| AATCTACGCCACTGCACAGA+TGG | + | chr2_3:33849977-33849996 | None:intergenic | 50.0% | |
| CCCTCTAGGTGCATTCAGAA+TGG | - | chr2_3:33850256-33850275 | Msa0288560:intron | 50.0% | |
| GCCATTCTGAATGCACCTAG+AGG | + | chr2_3:33850260-33850279 | None:intergenic | 50.0% | |
| AATTGTCAATGGTGCCTCCG+TGG | + | chr2_3:33850306-33850325 | None:intergenic | 50.0% | |
| ACAGCACAAGATGGAGACAG+TGG | - | chr2_3:33850616-33850635 | Msa0288560:intron | 50.0% | |
| ! | TAATTTGTGGCCTGTGGGCA+TGG | - | chr2_3:33850705-33850724 | Msa0288560:intron | 50.0% |
| ! | GACCTCTCAATTTGAGGTCC+AGG | - | chr2_3:33850745-33850764 | Msa0288560:intron | 50.0% |
| ! | CCTCTCAATTTGAGGTCCAG+GGG | - | chr2_3:33850747-33850766 | Msa0288560:intron | 50.0% |
| CCACAATGGATATGATCCCC+TGG | + | chr2_3:33850766-33850785 | None:intergenic | 50.0% | |
| CCAGGGGATCATATCCATTG+TGG | - | chr2_3:33850763-33850782 | Msa0288560:intron | 50.0% | |
| TACAGAGACCTCTCAGTGTG+AGG | - | chr2_3:33851089-33851108 | Msa0288560:intron | 50.0% | |
| ACTGGACAGGTCCTAATGAG+CGG | - | chr2_3:33851171-33851190 | Msa0288560:intron | 50.0% | |
| TGAGCGGCTTAACCTTACTG+TGG | - | chr2_3:33851187-33851206 | Msa0288560:intron | 50.0% | |
| GAGCGGCTTAACCTTACTGT+GGG | - | chr2_3:33851188-33851207 | Msa0288560:intron | 50.0% | |
| AGTGATGAGCATGCACACAC+AGG | - | chr2_3:33851344-33851363 | Msa0288560:intron | 50.0% | |
| GTGATGAGCATGCACACACA+GGG | - | chr2_3:33851345-33851364 | Msa0288560:intron | 50.0% | |
| GCAGCAAAGGATGTTTGCAG+AGG | - | chr2_3:33851602-33851621 | Msa0288560:intron | 50.0% | |
| GAGGCACGTGCTAGAATGAA+TGG | - | chr2_3:33851621-33851640 | Msa0288560:CDS | 50.0% | |
| GCACGTGCTAGAATGAATGG+AGG | - | chr2_3:33851624-33851643 | Msa0288560:CDS | 50.0% | |
| GCATCTCTGACTCTTACCTG+TGG | - | chr2_3:33851730-33851749 | Msa0288560:intron | 50.0% | |
| CTTGCAACACGGACATCAGG+TGG | + | chr2_3:33848781-33848800 | None:intergenic | 55.0% | |
| CCGTGTTGCAAGAGATACCC+AGG | - | chr2_3:33848789-33848808 | Msa0288560:intron | 55.0% | |
| CAGGAAACCACACGGCACAA+GGG | + | chr2_3:33849200-33849219 | None:intergenic | 55.0% | |
| GCACAGAACTTCCAAGGGGA+GGG | + | chr2_3:33849872-33849891 | None:intergenic | 55.0% | |
| TGCACAGAACTTCCAAGGGG+AGG | + | chr2_3:33849873-33849892 | None:intergenic | 55.0% | |
| CCCCTGGACCTCAAATTGAG+AGG | + | chr2_3:33850750-33850769 | None:intergenic | 55.0% | |
| !! | CTTTAGGTTGCCTTGCCCAC+AGG | + | chr2_3:33851068-33851087 | None:intergenic | 55.0% |
| GACCTCTCAGTGTGAGGTCA+AGG | - | chr2_3:33851095-33851114 | Msa0288560:intron | 55.0% | |
| CACCTTGACCTCACACTGAG+AGG | + | chr2_3:33851100-33851119 | None:intergenic | 55.0% | |
| GGATTGCGGCTCTCAAGCAT+TGG | + | chr2_3:33851387-33851406 | None:intergenic | 55.0% | |
| ! | CCCTGCTGCTTATGGGATTG+CGG | + | chr2_3:33851401-33851420 | None:intergenic | 55.0% |
| CCGCAATCCCATAAGCAGCA+GGG | - | chr2_3:33851398-33851417 | Msa0288560:intron | 55.0% | |
| ACGATGACCCTTGTGCCGTG+TGG | - | chr2_3:33849190-33849209 | Msa0288560:CDS | 60.0% | |
| GCAGGAAACCACACGGCACA+AGG | + | chr2_3:33849201-33849220 | None:intergenic | 60.0% | |
| !! | GTGACGGGCAGGAAACCACA+CGG | + | chr2_3:33849208-33849227 | None:intergenic | 60.0% |
| GTCAATGGTGCCTCCGTGGT+GGG | + | chr2_3:33850302-33850321 | None:intergenic | 60.0% | |
| TGTCAATGGTGCCTCCGTGG+TGG | + | chr2_3:33850303-33850322 | None:intergenic | 60.0% | |
| CTTAAGGCTGCCATGCCCAC+AGG | + | chr2_3:33850718-33850737 | None:intergenic | 60.0% | |
| GCCGCAATCCCATAAGCAGC+AGG | - | chr2_3:33851397-33851416 | Msa0288560:intron | 60.0% | |
| CTCAGCTGCACCGCTCCACT+TGG | + | chr2_3:33851556-33851575 | None:intergenic | 65.0% | |
| CGGTGCAGCTGAGATGACCG+AGG | - | chr2_3:33851563-33851582 | Msa0288560:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 33848224 | 33852030 | 33848224 | ID=Msa0288560;Name=Msa0288560 |
| chr2_3 | mRNA | 33848224 | 33852030 | 33848224 | ID=Msa0288560-mRNA-1;Parent=Msa0288560;Name=Msa0288560-mRNA-1;_AED=0.06;_eAED=0.06;_QI=279|0.66|0.85|0.85|0.83|0.85|7|335|187 |
| chr2_3 | exon | 33848224 | 33848720 | 33848224 | ID=Msa0288560-mRNA-1:exon:11107;Parent=Msa0288560-mRNA-1 |
| chr2_3 | exon | 33849138 | 33849230 | 33849138 | ID=Msa0288560-mRNA-1:exon:11106;Parent=Msa0288560-mRNA-1 |
| chr2_3 | exon | 33849617 | 33849685 | 33849617 | ID=Msa0288560-mRNA-1:exon:11105;Parent=Msa0288560-mRNA-1 |
| chr2_3 | exon | 33850471 | 33850565 | 33850471 | ID=Msa0288560-mRNA-1:exon:11104;Parent=Msa0288560-mRNA-1 |
| chr2_3 | exon | 33851419 | 33851508 | 33851419 | ID=Msa0288560-mRNA-1:exon:11103;Parent=Msa0288560-mRNA-1 |
| chr2_3 | exon | 33851609 | 33851687 | 33851609 | ID=Msa0288560-mRNA-1:exon:11102;Parent=Msa0288560-mRNA-1 |
| chr2_3 | exon | 33851776 | 33852030 | 33851776 | ID=Msa0288560-mRNA-1:exon:11101;Parent=Msa0288560-mRNA-1 |
| chr2_3 | five_prime_UTR | 33851776 | 33852030 | 33851776 | ID=Msa0288560-mRNA-1:five_prime_utr;Parent=Msa0288560-mRNA-1 |
| chr2_3 | five_prime_UTR | 33851664 | 33851687 | 33851664 | ID=Msa0288560-mRNA-1:five_prime_utr;Parent=Msa0288560-mRNA-1 |
| chr2_3 | CDS | 33851609 | 33851663 | 33851609 | ID=Msa0288560-mRNA-1:cds;Parent=Msa0288560-mRNA-1 |
| chr2_3 | CDS | 33851419 | 33851508 | 33851419 | ID=Msa0288560-mRNA-1:cds;Parent=Msa0288560-mRNA-1 |
| chr2_3 | CDS | 33850471 | 33850565 | 33850471 | ID=Msa0288560-mRNA-1:cds;Parent=Msa0288560-mRNA-1 |
| chr2_3 | CDS | 33849617 | 33849685 | 33849617 | ID=Msa0288560-mRNA-1:cds;Parent=Msa0288560-mRNA-1 |
| chr2_3 | CDS | 33849138 | 33849230 | 33849138 | ID=Msa0288560-mRNA-1:cds;Parent=Msa0288560-mRNA-1 |
| chr2_3 | CDS | 33848559 | 33848720 | 33848559 | ID=Msa0288560-mRNA-1:cds;Parent=Msa0288560-mRNA-1 |
| chr2_3 | three_prime_UTR | 33848224 | 33848558 | 33848224 | ID=Msa0288560-mRNA-1:three_prime_utr;Parent=Msa0288560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
