AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0291720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0291720 MtrunA17_Chr2g0311661 83.871 310 31 2 1 310 1 291 0.0 539
Msa0291720 MtrunA17_Chr2g0311651 82.372 312 53 1 1 310 1 312 0.0 535
Msa0291720 MtrunA17_Chr5g0442771 54.422 294 122 7 18 306 14 300 4.47e-100 296
Msa0291720 MtrunA17_Chr5g0417001 51.417 247 103 7 16 260 6 237 2.08e-76 238
Msa0291720 MtrunA17_Chr8g0361731 48.996 249 110 7 19 260 11 249 1.14e-74 234
Msa0291720 MtrunA17_Chr6g0453131 58.011 181 57 5 12 186 6 173 5.94e-68 217
Msa0291720 MtrunA17_Chr2g0318101 46.286 175 83 4 24 194 17 184 7.67e-52 174
Msa0291720 MtrunA17_Chr3g0124761 52.941 170 66 6 24 193 9 164 8.62e-51 169
Msa0291720 MtrunA17_Chr2g0318081 51.744 172 67 4 24 195 18 173 2.41e-50 170
Msa0291720 MtrunA17_Chr4g0076731 50.888 169 66 4 18 186 50 201 2.60e-50 172
Msa0291720 MtrunA17_Chr8g0359921 53.143 175 62 6 24 195 16 173 4.91e-50 169
Msa0291720 MtrunA17_Chr7g0252971 47.929 169 75 5 24 187 10 170 1.88e-49 167
Msa0291720 MtrunA17_Chr8g0384721 52.761 163 64 6 24 186 9 158 1.99e-49 166
Msa0291720 MtrunA17_Chr4g0047841 46.237 186 85 4 24 197 17 199 2.03e-49 167
Msa0291720 MtrunA17_Chr2g0309891 34.843 287 161 7 24 309 8 269 6.59e-48 164
Msa0291720 MtrunA17_Chr5g0417791 50.000 164 68 4 24 186 5 155 9.20e-48 160
Msa0291720 MtrunA17_Chr5g0398971 47.093 172 71 5 21 189 7 161 1.05e-47 163
Msa0291720 MtrunA17_Chr4g0018391 46.199 171 72 4 21 189 7 159 1.71e-47 162
Msa0291720 MtrunA17_Chr7g0263931 39.614 207 108 4 24 230 13 202 1.94e-47 162
Msa0291720 MtrunA17_Chr3g0130731 48.837 172 73 7 15 186 1 157 4.56e-47 160
Msa0291720 MtrunA17_Chr4g0056541 45.304 181 79 5 21 199 7 169 8.11e-47 161
Msa0291720 MtrunA17_Chr2g0326361 47.500 160 74 4 24 183 16 165 1.15e-46 160
Msa0291720 MtrunA17_Chr8g0346001 45.402 174 86 4 15 186 9 175 1.15e-46 162
Msa0291720 MtrunA17_Chr4g0042561 49.080 163 71 4 24 186 11 161 1.71e-46 157
Msa0291720 MtrunA17_Chr3g0091921 45.198 177 83 3 16 192 10 172 4.42e-45 155
Msa0291720 MtrunA17_Chr7g0253011 46.821 173 81 4 20 192 16 177 4.77e-45 157
Msa0291720 MtrunA17_Chr6g0461661 43.814 194 94 4 10 200 3 184 1.44e-44 155
Msa0291720 MtrunA17_Chr4g0060931 45.087 173 80 4 20 192 16 173 1.80e-44 155
Msa0291720 MtrunA17_Chr6g0481091 40.609 197 96 4 24 214 8 189 7.65e-44 150
Msa0291720 MtrunA17_Chr7g0214071 45.198 177 77 5 16 192 10 166 1.84e-43 149
Msa0291720 MtrunA17_Chr5g0405211 37.864 206 109 3 15 218 1 189 2.03e-43 152
Msa0291720 MtrunA17_Chr6g0453451 45.556 180 81 6 15 192 12 176 2.12e-43 151
Msa0291720 MtrunA17_Chr8g0372121 45.029 171 74 4 21 189 6 158 2.60e-43 150
Msa0291720 MtrunA17_Chr3g0109821 45.402 174 80 3 24 196 8 167 2.83e-43 157
Msa0291720 MtrunA17_Chr2g0309331 35.688 269 139 9 17 281 6 244 3.50e-43 151
Msa0291720 MtrunA17_Chr6g0484441 41.714 175 83 4 18 192 2 157 2.77e-42 148
Msa0291720 MtrunA17_Chr5g0433781 46.386 166 73 4 24 188 8 158 5.16e-42 153
Msa0291720 MtrunA17_Chr8g0385991 44.068 177 87 5 13 189 6 170 1.81e-41 143
Msa0291720 MtrunA17_Chr2g0312321 37.872 235 118 7 24 258 13 219 2.03e-41 145
Msa0291720 MtrunA17_Chr7g0217721 41.361 191 102 4 25 210 22 207 2.69e-41 146
Msa0291720 MtrunA17_Chr1g0200561 41.667 180 85 4 9 186 7 168 3.92e-41 146
Msa0291720 MtrunA17_Chr3g0139331 43.182 176 84 3 17 192 6 165 4.34e-41 145
Msa0291720 MtrunA17_Chr2g0316971 44.118 170 82 4 18 187 20 176 2.88e-40 144
Msa0291720 MtrunA17_Chr4g0038751 40.741 189 88 4 19 201 12 182 6.89e-40 141
Msa0291720 MtrunA17_Chr1g0147421 42.353 170 81 4 24 192 29 182 4.35e-39 140
Msa0291720 MtrunA17_Chr5g0400461 41.714 175 83 4 17 187 2 161 4.44e-39 140
Msa0291720 MtrunA17_Chr1g0197361 43.860 171 78 4 24 192 10 164 6.07e-39 144
Msa0291720 MtrunA17_Chr4g0017921 42.197 173 69 5 21 186 8 156 6.11e-39 140
Msa0291720 MtrunA17_Chr3g0131911 38.318 214 106 5 13 226 6 193 9.13e-39 137
Msa0291720 MtrunA17_Chr4g0054791 41.765 170 86 4 24 192 8 165 1.49e-38 138
Msa0291720 MtrunA17_Chr1g0197351 44.242 165 82 3 24 187 44 199 1.14e-37 139
Msa0291720 MtrunA17_Chr1g0201021 48.855 131 62 2 23 152 20 146 2.18e-37 140
Msa0291720 MtrunA17_Chr3g0092671 43.860 171 78 4 24 192 7 161 2.78e-37 139
Msa0291720 MtrunA17_Chr1g0183741 33.636 220 123 4 24 243 12 208 8.37e-37 132
Msa0291720 MtrunA17_Chr7g0217711 47.101 138 68 2 25 162 22 154 1.56e-36 129
Msa0291720 MtrunA17_Chr5g0428991 41.808 177 84 6 12 186 16 175 1.56e-36 138
Msa0291720 MtrunA17_Chr3g0130101 41.818 165 80 4 23 186 8 157 3.07e-36 133
Msa0291720 MtrunA17_Chr3g0128151 40.110 182 90 5 8 187 9 173 5.12e-36 136
Msa0291720 MtrunA17_Chr3g0144271 47.482 139 69 3 24 161 25 160 8.64e-36 133
Msa0291720 MtrunA17_Chr8g0364791 40.476 168 78 4 23 186 7 156 1.26e-35 133
Msa0291720 MtrunA17_Chr8g0384201 39.286 168 80 4 23 186 7 156 8.07e-35 132
Msa0291720 MtrunA17_Chr7g0261411 40.994 161 77 3 24 184 12 154 2.35e-34 126
Msa0291720 MtrunA17_Chr3g0128111 40.244 164 82 3 25 187 45 193 2.80e-34 125
Msa0291720 MtrunA17_Chr8g0345671 46.617 133 65 5 20 150 10 138 4.71e-32 123
Msa0291720 MtrunA17_Chr4g0026141 41.520 171 83 7 19 184 2 160 3.65e-30 115
Msa0291720 MtrunA17_Chr8g0345691 39.286 168 80 6 19 184 10 157 9.10e-30 117
Msa0291720 MtrunA17_Chr2g0321631 37.952 166 87 5 24 184 6 160 1.47e-27 107
Msa0291720 MtrunA17_Chr7g0266701 34.270 178 102 6 19 191 2 169 2.27e-27 107
Msa0291720 MtrunA17_Chr8g0345711 37.870 169 97 7 19 184 10 173 2.43e-27 105
Msa0291720 MtrunA17_Chr3g0113001 31.579 228 130 5 75 288 17 232 4.18e-26 105
Msa0291720 MtrunA17_Chr4g0050701 32.317 164 95 4 24 187 13 160 4.63e-25 99.4
Msa0291720 MtrunA17_Chr2g0321741 40.367 109 61 1 42 150 12 116 7.53e-25 102
Msa0291720 MtrunA17_Chr8g0345731 34.194 155 95 5 19 169 22 173 2.93e-23 94.4
Msa0291720 MtrunA17_Chr8g0345721 36.306 157 66 4 25 150 38 191 5.42e-23 94.4
Msa0291720 MtrunA17_Chr8g0345741 40.000 120 67 4 33 150 2 118 1.88e-20 86.3
Msa0291720 MtrunA17_Chr3g0113031 39.200 125 64 4 87 210 4 117 7.20e-20 87.4
Msa0291720 MtrunA17_Chr8g0384351 29.101 189 95 8 24 212 12 161 3.27e-19 83.6
Msa0291720 MtrunA17_Chr7g0251651 36.429 140 73 6 17 150 12 141 6.96e-19 82.8
Msa0291720 MtrunA17_Chr7g0243371 50.000 80 38 1 76 155 17 94 9.72e-19 80.5
Msa0291720 MtrunA17_Chr8g0345701 37.838 148 70 8 25 155 10 152 2.20e-18 81.3
Msa0291720 MtrunA17_Chr7g0251671 32.168 143 87 6 14 154 3 137 1.50e-17 78.6
Msa0291720 MtrunA17_Chr7g0251661 34.058 138 83 5 14 150 3 133 1.72e-17 78.2
Msa0291720 MtrunA17_Chr3g0130321 29.940 167 97 6 24 185 9 160 4.97e-17 78.2
Msa0291720 MtrunA17_Chr1g0194791 65.957 47 15 1 24 69 48 94 1.35e-15 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0291720 AT2G43000.1 70.115 174 37 3 18 191 14 172 2.34e-84 255
Msa0291720 AT3G12910.1 49.007 302 133 10 10 304 9 296 3.11e-83 253
Msa0291720 AT5G39820.1 53.636 220 81 6 15 217 13 228 2.06e-72 227
Msa0291720 AT1G26870.1 61.143 175 58 5 16 186 7 175 1.51e-69 222
Msa0291720 AT3G04070.1 48.588 177 77 4 24 187 12 187 4.74e-53 177
Msa0291720 AT3G04070.2 50.909 165 75 4 24 187 12 171 5.58e-53 177
Msa0291720 AT1G61110.1 46.193 197 91 6 8 200 3 188 9.57e-53 176
Msa0291720 AT2G02450.1 52.439 164 61 4 23 186 52 198 1.58e-51 174
Msa0291720 AT2G02450.2 52.439 164 61 4 23 186 52 198 1.66e-51 175
Msa0291720 AT3G15510.1 48.235 170 77 4 26 191 21 183 2.10e-50 171
Msa0291720 AT5G08790.1 42.273 220 103 8 25 239 10 210 3.00e-50 168
Msa0291720 AT1G69490.1 50.920 163 68 4 24 186 11 161 5.03e-50 167
Msa0291720 AT1G01720.1 50.867 173 71 5 24 195 9 168 8.13e-50 167
Msa0291720 AT5G63790.1 46.277 188 85 7 25 210 53 226 1.23e-49 167
Msa0291720 AT5G63790.2 46.277 188 85 7 25 210 63 236 1.37e-49 167
Msa0291720 AT1G52890.1 48.404 188 76 5 24 209 16 184 4.79e-49 166
Msa0291720 AT3G15500.1 50.581 172 65 4 24 193 16 169 1.35e-48 165
Msa0291720 AT1G71930.2 34.694 294 160 6 24 308 11 281 4.76e-48 164
Msa0291720 AT1G71930.1 34.694 294 160 6 24 308 11 281 4.76e-48 164
Msa0291720 AT4G27410.2 49.412 170 70 4 24 193 16 169 1.27e-47 162
Msa0291720 AT5G61430.1 47.727 176 76 5 20 195 15 174 3.37e-47 162
Msa0291720 AT1G77450.1 49.123 171 72 7 24 193 12 168 6.67e-47 159
Msa0291720 AT2G46770.1 44.318 176 89 4 15 186 10 180 1.45e-46 161
Msa0291720 AT2G43000.2 71.963 107 16 2 85 191 2 94 2.09e-46 155
Msa0291720 AT5G07680.1 46.961 181 78 6 16 195 12 175 3.07e-46 159
Msa0291720 AT5G07680.2 47.126 174 75 5 20 192 2 159 3.65e-46 159
Msa0291720 AT1G12260.2 44.886 176 77 4 21 194 7 164 4.47e-46 159
Msa0291720 AT1G12260.1 44.886 176 77 4 21 194 7 164 6.25e-46 160
Msa0291720 AT5G62380.2 45.238 168 73 4 24 189 9 159 1.63e-45 157
Msa0291720 AT5G62380.1 45.238 168 73 4 24 189 9 159 1.63e-45 157
Msa0291720 AT1G52880.1 51.829 164 75 3 26 189 21 180 2.55e-45 156
Msa0291720 AT3G04060.1 47.090 189 79 8 20 202 19 192 5.34e-45 156
Msa0291720 AT4G36160.1 45.402 174 75 4 15 186 4 159 5.73e-45 157
Msa0291720 AT4G36160.3 45.402 174 75 4 15 186 4 159 5.73e-45 157
Msa0291720 AT4G36160.2 45.402 174 75 4 15 186 8 163 6.18e-45 157
Msa0291720 AT5G13180.1 49.068 161 64 3 24 184 16 158 7.74e-45 153
Msa0291720 AT2G17040.1 32.639 288 157 8 20 300 4 261 1.57e-44 153
Msa0291720 AT1G65910.1 44.444 189 86 5 24 210 8 179 1.90e-44 160
Msa0291720 AT5G18270.1 47.929 169 72 5 20 187 20 173 1.93e-44 154
Msa0291720 AT4G27410.3 45.699 186 70 5 24 193 16 186 2.02e-44 154
Msa0291720 AT5G39610.1 46.243 173 78 4 20 192 19 176 2.23e-44 153
Msa0291720 AT1G62700.1 45.029 171 74 4 21 189 7 159 4.42e-44 155
Msa0291720 AT1G62700.2 45.029 171 74 4 21 189 7 159 4.42e-44 155
Msa0291720 AT5G18270.2 47.337 169 73 5 20 187 20 173 6.59e-44 153
Msa0291720 AT2G18060.3 44.444 171 75 4 21 189 9 161 9.47e-44 154
Msa0291720 AT2G18060.1 44.444 171 75 4 21 189 9 161 9.47e-44 154
Msa0291720 AT2G33480.1 47.590 166 68 4 24 189 17 163 1.08e-43 150
Msa0291720 AT3G18400.1 44.571 175 79 5 18 192 2 158 1.10e-43 152
Msa0291720 AT3G61910.1 43.503 177 91 4 15 187 5 176 1.31e-43 152
Msa0291720 AT3G17730.1 45.455 165 74 3 24 187 8 157 1.38e-43 150
Msa0291720 AT2G33480.2 47.590 166 66 4 24 189 17 161 1.46e-43 150
Msa0291720 AT3G12977.1 38.723 235 108 9 24 256 20 220 2.41e-43 150
Msa0291720 AT1G54330.1 44.886 176 74 4 24 198 8 161 2.13e-42 148
Msa0291720 AT1G76420.1 45.122 164 73 4 24 186 24 171 2.39e-42 149
Msa0291720 AT2G24430.2 44.186 172 79 4 24 194 18 173 3.03e-42 148
Msa0291720 AT2G24430.1 44.186 172 79 4 24 194 18 173 3.03e-42 148
Msa0291720 AT3G29035.1 51.333 150 65 4 20 168 23 165 3.60e-42 148
Msa0291720 AT3G03200.1 44.706 170 79 4 24 192 8 163 4.40e-42 152
Msa0291720 AT5G17260.1 43.529 170 81 4 24 192 8 163 5.37e-42 151
Msa0291720 AT5G66300.1 42.614 176 80 5 24 194 14 173 6.63e-42 147
Msa0291720 AT3G10500.1 44.706 170 78 3 24 192 11 165 2.92e-41 150
Msa0291720 AT1G79580.3 42.442 172 79 5 17 186 13 166 6.22e-41 146
Msa0291720 AT1G79580.5 42.442 172 79 5 17 186 13 166 6.22e-41 146
Msa0291720 AT1G79580.4 42.442 172 79 5 17 186 13 166 6.22e-41 146
Msa0291720 AT1G79580.2 42.442 172 79 5 17 186 13 166 6.22e-41 146
Msa0291720 AT1G79580.1 42.442 172 79 5 17 186 13 166 6.22e-41 146
Msa0291720 AT1G32770.1 41.304 184 90 6 15 191 10 182 2.31e-40 144
Msa0291720 AT1G32510.1 41.143 175 89 3 24 194 8 172 2.52e-40 142
Msa0291720 AT5G46590.2 49.231 130 62 2 24 152 8 134 4.43e-40 142
Msa0291720 AT3G15170.1 43.182 176 87 4 18 192 16 179 4.43e-40 142
Msa0291720 AT5G04410.1 44.848 165 75 3 24 187 11 160 7.41e-40 147
Msa0291720 AT1G56010.2 38.627 233 121 8 24 253 21 234 7.78e-40 142
Msa0291720 AT5G46590.1 49.231 130 62 2 24 152 8 134 7.88e-40 141
Msa0291720 AT3G10480.1 43.636 165 78 4 24 187 29 179 8.21e-40 145
Msa0291720 AT4G10350.1 42.690 171 79 5 21 188 9 163 1.84e-39 142
Msa0291720 AT3G10480.2 43.636 165 77 4 24 187 29 178 2.11e-39 144
Msa0291720 AT4G17980.1 43.023 172 85 5 17 187 2 161 2.41e-39 139
Msa0291720 AT4G17980.2 43.636 165 81 4 24 187 8 161 3.28e-39 140
Msa0291720 AT2G27300.1 46.094 128 65 1 23 150 15 138 4.45e-38 138
Msa0291720 AT5G53950.1 42.442 172 87 3 17 188 12 171 7.17e-38 138
Msa0291720 AT1G33280.1 41.818 165 76 3 24 186 10 156 7.21e-38 136
Msa0291720 AT5G09330.5 40.000 165 83 3 24 187 8 157 7.86e-38 140
Msa0291720 AT5G09330.2 40.000 165 83 3 24 187 8 157 7.86e-38 140
Msa0291720 AT5G09330.4 40.000 165 83 3 24 187 8 157 7.86e-38 140
Msa0291720 AT5G09330.3 40.000 165 83 3 24 187 8 157 7.86e-38 140
Msa0291720 AT5G09330.1 40.000 165 83 3 24 187 8 157 7.86e-38 140
Msa0291720 AT3G10490.1 40.936 171 74 4 24 187 29 179 1.28e-37 134
Msa0291720 AT3G44290.2 42.188 128 70 1 23 150 15 138 5.05e-37 132
Msa0291720 AT1G34190.1 42.424 165 79 4 24 187 18 167 5.90e-37 139
Msa0291720 AT3G10490.2 40.936 171 74 4 24 187 29 179 7.53e-37 137
Msa0291720 AT4G35580.3 43.529 170 77 5 19 186 7 159 1.23e-36 137
Msa0291720 AT5G22290.1 42.969 128 69 1 23 150 22 145 1.26e-36 134
Msa0291720 AT4G35580.1 43.529 170 77 5 19 186 7 159 1.31e-36 137
Msa0291720 AT4G35580.2 43.529 170 77 5 19 186 7 159 1.35e-36 137
Msa0291720 AT3G44290.1 42.188 128 70 1 23 150 15 138 2.59e-36 133
Msa0291720 AT1G34180.3 49.231 130 61 2 24 152 18 143 3.48e-36 135
Msa0291720 AT5G64060.1 39.394 165 84 3 24 187 8 157 9.26e-36 132
Msa0291720 AT1G34180.1 49.231 130 61 2 24 152 18 143 1.06e-35 135
Msa0291720 AT1G33060.2 48.485 132 62 3 21 151 24 150 1.13e-35 136
Msa0291720 AT1G33060.1 48.485 132 62 3 21 151 24 150 1.28e-35 136
Msa0291720 AT3G10480.3 37.879 198 75 5 24 187 29 212 1.82e-34 131
Msa0291720 AT1G34180.4 45.070 142 61 2 24 152 18 155 2.47e-34 130
Msa0291720 AT1G34180.2 45.070 142 61 2 24 152 18 155 7.02e-34 130
Msa0291720 AT5G24590.2 41.667 168 80 5 23 187 13 165 1.06e-33 128
Msa0291720 AT3G49530.2 39.645 169 86 5 19 186 11 164 1.16e-33 127
Msa0291720 AT3G49530.1 39.645 169 86 5 19 186 11 164 4.62e-33 127
Msa0291720 AT5G04395.1 40.278 144 73 2 24 155 30 172 3.44e-31 115
Msa0291720 AT4G28530.1 40.884 181 69 6 24 186 12 172 4.36e-31 119
Msa0291720 AT5G64530.1 34.884 172 94 6 24 192 5 161 2.41e-29 111
Msa0291720 AT5G61430.2 47.934 121 49 3 75 195 5 111 2.81e-29 113
Msa0291720 AT3G12977.2 38.624 189 79 9 70 256 14 167 9.25e-29 110
Msa0291720 AT5G22380.1 30.870 230 131 7 19 235 3 217 2.58e-28 109
Msa0291720 AT5G64530.2 40.769 130 62 4 24 153 5 119 3.27e-27 104
Msa0291720 AT1G32870.2 46.923 130 62 3 24 152 12 135 7.50e-27 110
Msa0291720 AT1G32870.1 46.923 130 62 3 24 152 12 135 8.79e-27 110
Msa0291720 AT3G44350.2 36.207 174 88 7 25 191 8 165 1.05e-26 105
Msa0291720 AT1G32870.3 46.923 130 62 3 24 152 48 171 1.09e-26 110
Msa0291720 AT3G44350.1 42.537 134 64 5 25 151 8 135 3.94e-26 101
Msa0291720 AT4G01550.1 40.909 132 75 3 23 152 5 135 4.69e-24 102
Msa0291720 AT1G56010.1 35.676 185 99 6 70 253 2 167 6.02e-24 98.6
Msa0291720 AT4G01540.4 42.105 133 73 4 23 152 5 136 1.35e-23 100
Msa0291720 AT4G01540.2 42.105 133 73 4 23 152 5 136 1.78e-23 100
Msa0291720 AT4G01540.3 42.105 133 73 4 23 152 5 136 2.38e-23 99.8
Msa0291720 AT4G01540.1 42.105 133 73 4 23 152 5 136 2.45e-23 100
Msa0291720 AT4G01520.1 40.458 131 74 4 25 152 7 136 3.28e-23 97.4
Msa0291720 AT2G33480.3 44.348 115 49 3 75 189 7 106 8.56e-23 94.4
Msa0291720 AT4G10350.2 42.105 114 50 3 76 188 18 116 3.53e-20 89.0
Msa0291720 AT3G04420.2 38.760 129 72 4 25 150 6 130 4.15e-20 89.0
Msa0291720 AT1G02230.1 39.850 133 73 5 25 154 6 134 7.27e-20 89.0
Msa0291720 AT1G02250.1 40.310 129 70 5 25 150 6 130 8.24e-20 89.0
Msa0291720 AT3G04420.1 38.760 129 72 4 25 150 6 130 1.09e-19 88.6
Msa0291720 AT5G14000.2 31.250 160 100 4 9 166 3 154 1.27e-19 84.3
Msa0291720 AT5G14000.1 31.288 163 102 4 9 169 3 157 6.65e-19 83.6
Msa0291720 AT4G28530.2 42.991 107 42 3 24 113 12 116 3.18e-17 81.3
Msa0291720 AT5G50820.1 35.556 135 72 5 24 155 19 141 5.60e-17 78.2
Msa0291720 AT1G02220.1 37.209 129 71 5 25 150 6 127 8.56e-16 77.8
Msa0291720 AT2G18060.2 39.326 89 37 2 101 189 2 73 1.15e-14 73.2
Msa0291720 AT1G01010.1 36.567 134 74 6 25 150 6 136 6.42e-14 72.4
Msa0291720 AT3G56530.1 29.448 163 96 4 24 184 54 199 3.26e-13 69.7

Find 55 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTGCTATCATTTGATAAT+TGG 0.128829 2_3:+40376862 Msa0291720:CDS
TCTATGGCATGCAGGAAATT+TGG 0.174862 2_3:+40376514 Msa0291720:intron
TCTCCTCCATTTGAGTATAT+TGG 0.237105 2_3:-40375851 None:intergenic
CTCCATATTGTTGCCCATTC+TGG 0.244126 2_3:-40376637 None:intergenic
GAGTCACTGGCTCTGGATTC+TGG 0.244802 2_3:+40375807 Msa0291720:CDS
AGCATAGGAAATGTTTGTTT+TGG 0.292918 2_3:-40375990 None:intergenic
GATGATGATGTTCCACTTCC+TGG 0.327314 2_3:+40374840 Msa0291720:CDS
CCAGAGCCAGTGACTCTATT+TGG 0.333205 2_3:-40375800 None:intergenic
CAACAAACATATATAAATTT+CGG 0.353707 2_3:+40376672 Msa0291720:CDS
TTAGCTAATTGTTTCATCTC+TGG 0.354898 2_3:-40376585 None:intergenic
ATGCATCATCCAATCAGTTT+TGG 0.361511 2_3:-40375939 None:intergenic
CACCAGAATGGGCAACAATA+TGG 0.367590 2_3:+40376635 Msa0291720:CDS
TTGATGAGATCAATAGCAAT+AGG 0.399965 2_3:-40374930 None:intergenic
GTTGCTATCATTTGATAATT+GGG 0.410195 2_3:+40376863 Msa0291720:CDS
CGTTAATGTGATGATGTTCA+TGG 0.410482 2_3:-40376701 None:intergenic
GCCAAAGAGGAAGAAAATAT+AGG 0.410785 2_3:+40375765 Msa0291720:CDS
CCAAATAGAGTCACTGGCTC+TGG 0.412912 2_3:+40375800 Msa0291720:CDS
ATATCTACAAATATGATCCT+TGG 0.441210 2_3:+40374961 Msa0291720:CDS
CGTAACACGGGCACCAGAAT+GGG 0.442225 2_3:+40376624 Msa0291720:CDS
ATCAAATTCTTCGATTAAGC+AGG 0.451212 2_3:+40376830 Msa0291720:CDS
GTTTATTACCGTGGTAGTGC+TGG 0.452034 2_3:+40375908 Msa0291720:CDS
TCTGGATTCTGGAAAGCAAC+TGG 0.467422 2_3:+40375818 Msa0291720:CDS
TTTGATAATTGGGATGAGCT+TGG 0.467447 2_3:+40376873 Msa0291720:CDS
GATAAACCAATATACTCAAA+TGG 0.472311 2_3:+40375845 Msa0291720:CDS
TCGTAACACGGGCACCAGAA+TGG 0.473256 2_3:+40376623 Msa0291720:CDS
TATCTACAAATATGATCCTT+GGG 0.485955 2_3:+40374962 Msa0291720:CDS
GATAATGAATATGTTGTAGA+TGG 0.489983 2_3:+40374816 Msa0291720:CDS
GAAAAGGTACCAAAACTGAT+TGG 0.493324 2_3:+40375930 Msa0291720:CDS
AATTATATCAATTACAAACT+AGG 0.502539 2_3:-40376924 None:intergenic
TTGCTTGTATAATTATTGAC+TGG 0.508672 2_3:-40376732 None:intergenic
AAATGTAGCTGGAGCAGAGA+AGG 0.513323 2_3:+40375727 Msa0291720:CDS
CAAGCAATGATCAAAGGAAT+CGG 0.513538 2_3:+40376748 Msa0291720:CDS
TACCGTGGTAGTGCTGGAAA+AGG 0.513961 2_3:+40375914 Msa0291720:CDS
TATGCAGAAGCAAATGTAGC+TGG 0.529620 2_3:+40375716 Msa0291720:intron
TGGAAACGAAATCCAGGAAG+TGG 0.529636 2_3:-40374852 None:intergenic
GTAACAAGTTCTTCATCTGT+AGG 0.530457 2_3:-40374876 None:intergenic
CAAGTTCTTCATCTGTAGGA+TGG 0.540071 2_3:-40374872 None:intergenic
ATATACTCAAATGGAGGAGA+AGG 0.541852 2_3:+40375854 Msa0291720:CDS
ACGTCAAGCCGTTCGTAACA+CGG 0.550583 2_3:+40376611 Msa0291720:CDS
GTTAGACCAAATAGAGTCAC+TGG 0.561770 2_3:+40375794 Msa0291720:CDS
TCTGGTGCCCGTGTTACGAA+CGG 0.565365 2_3:-40376619 None:intergenic
GTAGGATGGAAACGAAATCC+AGG 0.566609 2_3:-40374858 None:intergenic
CGTCAAGCCGTTCGTAACAC+GGG 0.566912 2_3:+40376612 Msa0291720:CDS
ATCAACATCATTCTTAGCAT+AGG 0.578970 2_3:-40376005 None:intergenic
ATTATACAAGCAATGATCAA+AGG 0.581251 2_3:+40376742 Msa0291720:CDS
GGAGAAGGAAATGATTGTGT+TGG 0.583944 2_3:+40375869 Msa0291720:CDS
CATATACTTGGAAGATCCCA+AGG 0.592043 2_3:-40374978 None:intergenic
TTAATCGAAGAATTTGATGA+TGG 0.595206 2_3:-40376825 None:intergenic
AAAACACTTGTTTATTACCG+TGG 0.603507 2_3:+40375899 Msa0291720:CDS
ATGAGCTTGGATCAGTTGTG+AGG 0.626748 2_3:+40376886 Msa0291720:CDS
TCAAAAGAAATGTATCACAA+AGG 0.638749 2_3:+40376553 Msa0291720:CDS
AAACCAATATACTCAAATGG+AGG 0.641619 2_3:+40375848 Msa0291720:CDS
AGATCAGTTGAGCTCTAGAG+TGG 0.646085 2_3:+40376779 Msa0291720:CDS
TATGAACGATGATTTCAACA+CGG 0.741102 2_3:+40374794 Msa0291720:CDS
TGAACATCATCACATTAACG+AGG 0.762973 2_3:+40376704 Msa0291720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATAATTATGGATTAAA+GGG - chr2_3:40376203-40376222 None:intergenic 10.0%
!!! ATAAAATAATTATGGATTAA+AGG - chr2_3:40376204-40376223 None:intergenic 10.0%
!!! ATTATTTTATTATTTTCTCT+TGG + chr2_3:40376214-40376233 Msa0291720:intron 10.0%
!! TTTAAAAAATGTTAATAGAA+AGG + chr2_3:40376278-40376297 Msa0291720:intron 10.0%
!!! TAAAATAATTATGGATTAAA+GGG - chr2_3:40376203-40376222 None:intergenic 10.0%
!!! ATAAAATAATTATGGATTAA+AGG - chr2_3:40376204-40376223 None:intergenic 10.0%
!!! ATTATTTTATTATTTTCTCT+TGG + chr2_3:40376214-40376233 Msa0291720:intron 10.0%
!! TTTAAAAAATGTTAATAGAA+AGG + chr2_3:40376278-40376297 Msa0291720:intron 10.0%
!! CAATACTTAGATTTATAAAA+AGG - chr2_3:40375350-40375369 None:intergenic 15.0%
!!! TAGCTATGAAAATTTTAAAA+TGG + chr2_3:40375397-40375416 Msa0291720:intron 15.0%
!! ATAATGAAAAGGAAAAATAA+AGG - chr2_3:40375663-40375682 None:intergenic 15.0%
!! TATAGTTATCTATAATGAAA+AGG - chr2_3:40375674-40375693 None:intergenic 15.0%
!! ATATTCAAACAATAAAAGAT+TGG - chr2_3:40376068-40376087 None:intergenic 15.0%
!! CAACAAACATATATAAATTT+CGG + chr2_3:40376672-40376691 Msa0291720:CDS 15.0%
!! CAATACTTAGATTTATAAAA+AGG - chr2_3:40375350-40375369 None:intergenic 15.0%
!!! TAGCTATGAAAATTTTAAAA+TGG + chr2_3:40375397-40375416 Msa0291720:intron 15.0%
!! ATAATGAAAAGGAAAAATAA+AGG - chr2_3:40375663-40375682 None:intergenic 15.0%
!! TATAGTTATCTATAATGAAA+AGG - chr2_3:40375674-40375693 None:intergenic 15.0%
!! ATATTCAAACAATAAAAGAT+TGG - chr2_3:40376068-40376087 None:intergenic 15.0%
!! CAACAAACATATATAAATTT+CGG + chr2_3:40376672-40376691 Msa0291720:CDS 15.0%
!!! AATATTTTTCAGTGTAATTG+AGG - chr2_3:40375591-40375610 None:intergenic 20.0%
!! ATATATAGAGAGAATTAAGT+GGG - chr2_3:40375618-40375637 None:intergenic 20.0%
!! TATATATAGAGAGAATTAAG+TGG - chr2_3:40375619-40375638 None:intergenic 20.0%
!!! GTTTGAATATATGTTGATTT+TGG + chr2_3:40376078-40376097 Msa0291720:intron 20.0%
!! TGGATTAATTATTGTGATAA+TGG - chr2_3:40376316-40376335 None:intergenic 20.0%
!!! AGATACAAAATTTTACAAGT+TGG - chr2_3:40376336-40376355 None:intergenic 20.0%
!! TATTACTAATAGGATTACAA+GGG + chr2_3:40376403-40376422 Msa0291720:intron 20.0%
!!! AATATTTTTCAGTGTAATTG+AGG - chr2_3:40375591-40375610 None:intergenic 20.0%
!! ATATATAGAGAGAATTAAGT+GGG - chr2_3:40375618-40375637 None:intergenic 20.0%
!! TATATATAGAGAGAATTAAG+TGG - chr2_3:40375619-40375638 None:intergenic 20.0%
!!! GTTTGAATATATGTTGATTT+TGG + chr2_3:40376078-40376097 Msa0291720:intron 20.0%
!! TGGATTAATTATTGTGATAA+TGG - chr2_3:40376316-40376335 None:intergenic 20.0%
!!! AGATACAAAATTTTACAAGT+TGG - chr2_3:40376336-40376355 None:intergenic 20.0%
!! TATTACTAATAGGATTACAA+GGG + chr2_3:40376403-40376422 Msa0291720:intron 20.0%
! GATAATGAATATGTTGTAGA+TGG + chr2_3:40374816-40374835 Msa0291720:CDS 25.0%
! ATATCTACAAATATGATCCT+TGG + chr2_3:40374961-40374980 Msa0291720:CDS 25.0%
! TATCTACAAATATGATCCTT+GGG + chr2_3:40374962-40374981 Msa0291720:CDS 25.0%
! TCTAAATGACACAAACTATA+AGG + chr2_3:40375138-40375157 Msa0291720:intron 25.0%
! ACACAAACTATAAGGAAAAA+TGG + chr2_3:40375146-40375165 Msa0291720:intron 25.0%
! CTTGAATGTAGTTATAACTA+AGG - chr2_3:40375237-40375256 None:intergenic 25.0%
! CTTAGTTATAACTACATTCA+AGG + chr2_3:40375235-40375254 Msa0291720:intron 25.0%
!! TTTTGTCTTAATCATCTTTC+TGG + chr2_3:40375264-40375283 Msa0291720:intron 25.0%
! TGATCATGATTATCAAGAAT+TGG + chr2_3:40375321-40375340 Msa0291720:intron 25.0%
! GATAAACCAATATACTCAAA+TGG + chr2_3:40375845-40375864 Msa0291720:CDS 25.0%
!!! TAAGCAAGAGTATTACTAAT+AGG + chr2_3:40376393-40376412 Msa0291720:intron 25.0%
! GTATTACTAATAGGATTACA+AGG + chr2_3:40376402-40376421 Msa0291720:intron 25.0%
!! TGTTTCATGTTGATTGTAAT+GGG - chr2_3:40376438-40376457 None:intergenic 25.0%
!! ATGTTTCATGTTGATTGTAA+TGG - chr2_3:40376439-40376458 None:intergenic 25.0%
! TCAAAAGAAATGTATCACAA+AGG + chr2_3:40376553-40376572 Msa0291720:CDS 25.0%
! TTGCTTGTATAATTATTGAC+TGG - chr2_3:40376735-40376754 None:intergenic 25.0%
! ATTATACAAGCAATGATCAA+AGG + chr2_3:40376742-40376761 Msa0291720:CDS 25.0%
! TTAATCGAAGAATTTGATGA+TGG - chr2_3:40376828-40376847 None:intergenic 25.0%
!! AGTTGCTATCATTTGATAAT+TGG + chr2_3:40376862-40376881 Msa0291720:CDS 25.0%
!! GTTGCTATCATTTGATAATT+GGG + chr2_3:40376863-40376882 Msa0291720:CDS 25.0%
! GATAATGAATATGTTGTAGA+TGG + chr2_3:40374816-40374835 Msa0291720:CDS 25.0%
! ATATCTACAAATATGATCCT+TGG + chr2_3:40374961-40374980 Msa0291720:CDS 25.0%
! TATCTACAAATATGATCCTT+GGG + chr2_3:40374962-40374981 Msa0291720:CDS 25.0%
! TCTAAATGACACAAACTATA+AGG + chr2_3:40375138-40375157 Msa0291720:intron 25.0%
! ACACAAACTATAAGGAAAAA+TGG + chr2_3:40375146-40375165 Msa0291720:intron 25.0%
! CTTGAATGTAGTTATAACTA+AGG - chr2_3:40375237-40375256 None:intergenic 25.0%
! CTTAGTTATAACTACATTCA+AGG + chr2_3:40375235-40375254 Msa0291720:intron 25.0%
!! TTTTGTCTTAATCATCTTTC+TGG + chr2_3:40375264-40375283 Msa0291720:intron 25.0%
! TGATCATGATTATCAAGAAT+TGG + chr2_3:40375321-40375340 Msa0291720:intron 25.0%
! GATAAACCAATATACTCAAA+TGG + chr2_3:40375845-40375864 Msa0291720:CDS 25.0%
!!! TAAGCAAGAGTATTACTAAT+AGG + chr2_3:40376393-40376412 Msa0291720:intron 25.0%
! GTATTACTAATAGGATTACA+AGG + chr2_3:40376402-40376421 Msa0291720:intron 25.0%
!! TGTTTCATGTTGATTGTAAT+GGG - chr2_3:40376438-40376457 None:intergenic 25.0%
!! ATGTTTCATGTTGATTGTAA+TGG - chr2_3:40376439-40376458 None:intergenic 25.0%
! TCAAAAGAAATGTATCACAA+AGG + chr2_3:40376553-40376572 Msa0291720:CDS 25.0%
! TTGCTTGTATAATTATTGAC+TGG - chr2_3:40376735-40376754 None:intergenic 25.0%
! ATTATACAAGCAATGATCAA+AGG + chr2_3:40376742-40376761 Msa0291720:CDS 25.0%
! TTAATCGAAGAATTTGATGA+TGG - chr2_3:40376828-40376847 None:intergenic 25.0%
!! AGTTGCTATCATTTGATAAT+TGG + chr2_3:40376862-40376881 Msa0291720:CDS 25.0%
!! GTTGCTATCATTTGATAATT+GGG + chr2_3:40376863-40376882 Msa0291720:CDS 25.0%
TATGAACGATGATTTCAACA+CGG + chr2_3:40374794-40374813 Msa0291720:CDS 30.0%
TTGATGAGATCAATAGCAAT+AGG - chr2_3:40374933-40374952 None:intergenic 30.0%
GTTAGATGACAACATATACT+TGG - chr2_3:40374993-40375012 None:intergenic 30.0%
TAGAAGAAATCACTATCGAA+AGG + chr2_3:40375111-40375130 Msa0291720:intron 30.0%
AGAAGAAATCACTATCGAAA+GGG + chr2_3:40375112-40375131 Msa0291720:intron 30.0%
TAATCAAACTATGTGTGTCT+GGG - chr2_3:40375201-40375220 None:intergenic 30.0%
ATAATCAAACTATGTGTGTC+TGG - chr2_3:40375202-40375221 None:intergenic 30.0%
AATTATTCCTTTGTAGCTGA+TGG - chr2_3:40375473-40375492 None:intergenic 30.0%
!!! TGTTACTTTTTTTGCCAAAG+AGG + chr2_3:40375752-40375771 Msa0291720:CDS 30.0%
! TCCTATATTTTCTTCCTCTT+TGG - chr2_3:40375769-40375788 None:intergenic 30.0%
AAACCAATATACTCAAATGG+AGG + chr2_3:40375848-40375867 Msa0291720:CDS 30.0%
AAAACACTTGTTTATTACCG+TGG + chr2_3:40375899-40375918 Msa0291720:CDS 30.0%
! AGCATAGGAAATGTTTGTTT+TGG - chr2_3:40375993-40376012 None:intergenic 30.0%
ATCAACATCATTCTTAGCAT+AGG - chr2_3:40376008-40376027 None:intergenic 30.0%
AAACAATAAAAGATTGGTGC+TGG - chr2_3:40376062-40376081 None:intergenic 30.0%
! GTCCTAATGATTTTTGTCTA+TGG + chr2_3:40376498-40376517 Msa0291720:intron 30.0%
TGCCATAGACAAAAATCATT+AGG - chr2_3:40376503-40376522 None:intergenic 30.0%
TTAGCTAATTGTTTCATCTC+TGG - chr2_3:40376588-40376607 None:intergenic 30.0%
ATCAAATTCTTCGATTAAGC+AGG + chr2_3:40376830-40376849 Msa0291720:CDS 30.0%
TATGAACGATGATTTCAACA+CGG + chr2_3:40374794-40374813 Msa0291720:CDS 30.0%
TTGATGAGATCAATAGCAAT+AGG - chr2_3:40374933-40374952 None:intergenic 30.0%
GTTAGATGACAACATATACT+TGG - chr2_3:40374993-40375012 None:intergenic 30.0%
TAGAAGAAATCACTATCGAA+AGG + chr2_3:40375111-40375130 Msa0291720:intron 30.0%
AGAAGAAATCACTATCGAAA+GGG + chr2_3:40375112-40375131 Msa0291720:intron 30.0%
TAATCAAACTATGTGTGTCT+GGG - chr2_3:40375201-40375220 None:intergenic 30.0%
ATAATCAAACTATGTGTGTC+TGG - chr2_3:40375202-40375221 None:intergenic 30.0%
AATTATTCCTTTGTAGCTGA+TGG - chr2_3:40375473-40375492 None:intergenic 30.0%
!!! TGTTACTTTTTTTGCCAAAG+AGG + chr2_3:40375752-40375771 Msa0291720:CDS 30.0%
! TCCTATATTTTCTTCCTCTT+TGG - chr2_3:40375769-40375788 None:intergenic 30.0%
AAACCAATATACTCAAATGG+AGG + chr2_3:40375848-40375867 Msa0291720:CDS 30.0%
AAAACACTTGTTTATTACCG+TGG + chr2_3:40375899-40375918 Msa0291720:CDS 30.0%
! AGCATAGGAAATGTTTGTTT+TGG - chr2_3:40375993-40376012 None:intergenic 30.0%
ATCAACATCATTCTTAGCAT+AGG - chr2_3:40376008-40376027 None:intergenic 30.0%
AAACAATAAAAGATTGGTGC+TGG - chr2_3:40376062-40376081 None:intergenic 30.0%
! GTCCTAATGATTTTTGTCTA+TGG + chr2_3:40376498-40376517 Msa0291720:intron 30.0%
TGCCATAGACAAAAATCATT+AGG - chr2_3:40376503-40376522 None:intergenic 30.0%
TTAGCTAATTGTTTCATCTC+TGG - chr2_3:40376588-40376607 None:intergenic 30.0%
ATCAAATTCTTCGATTAAGC+AGG + chr2_3:40376830-40376849 Msa0291720:CDS 30.0%
GTAACAAGTTCTTCATCTGT+AGG - chr2_3:40374879-40374898 None:intergenic 35.0%
GAAGAAATCACTATCGAAAG+GGG + chr2_3:40375113-40375132 Msa0291720:intron 35.0%
! TAATCATCTTTCTGGAGAAG+TGG + chr2_3:40375272-40375291 Msa0291720:intron 35.0%
!!! GGTCATTTTTTTTTTACCGC+TGG + chr2_3:40375293-40375312 Msa0291720:intron 35.0%
GCCAAAGAGGAAGAAAATAT+AGG + chr2_3:40375765-40375784 Msa0291720:CDS 35.0%
TCTCCTCCATTTGAGTATAT+TGG - chr2_3:40375854-40375873 None:intergenic 35.0%
ATATACTCAAATGGAGGAGA+AGG + chr2_3:40375854-40375873 Msa0291720:CDS 35.0%
!! GAAAAGGTACCAAAACTGAT+TGG + chr2_3:40375930-40375949 Msa0291720:CDS 35.0%
! ATGCATCATCCAATCAGTTT+TGG - chr2_3:40375942-40375961 None:intergenic 35.0%
!! GTTTTGGCATCAATGTTTGA+TGG - chr2_3:40375977-40375996 None:intergenic 35.0%
!! TCATGTTGATTGTAATGGGT+TGG - chr2_3:40376434-40376453 None:intergenic 35.0%
! CGTTAATGTGATGATGTTCA+TGG - chr2_3:40376704-40376723 None:intergenic 35.0%
TGAACATCATCACATTAACG+AGG + chr2_3:40376704-40376723 Msa0291720:CDS 35.0%
CAAGCAATGATCAAAGGAAT+CGG + chr2_3:40376748-40376767 Msa0291720:CDS 35.0%
! TTTGATAATTGGGATGAGCT+TGG + chr2_3:40376873-40376892 Msa0291720:CDS 35.0%
GTAACAAGTTCTTCATCTGT+AGG - chr2_3:40374879-40374898 None:intergenic 35.0%
GAAGAAATCACTATCGAAAG+GGG + chr2_3:40375113-40375132 Msa0291720:intron 35.0%
! TAATCATCTTTCTGGAGAAG+TGG + chr2_3:40375272-40375291 Msa0291720:intron 35.0%
!!! GGTCATTTTTTTTTTACCGC+TGG + chr2_3:40375293-40375312 Msa0291720:intron 35.0%
GCCAAAGAGGAAGAAAATAT+AGG + chr2_3:40375765-40375784 Msa0291720:CDS 35.0%
TCTCCTCCATTTGAGTATAT+TGG - chr2_3:40375854-40375873 None:intergenic 35.0%
ATATACTCAAATGGAGGAGA+AGG + chr2_3:40375854-40375873 Msa0291720:CDS 35.0%
!! GAAAAGGTACCAAAACTGAT+TGG + chr2_3:40375930-40375949 Msa0291720:CDS 35.0%
! ATGCATCATCCAATCAGTTT+TGG - chr2_3:40375942-40375961 None:intergenic 35.0%
!! GTTTTGGCATCAATGTTTGA+TGG - chr2_3:40375977-40375996 None:intergenic 35.0%
!! TCATGTTGATTGTAATGGGT+TGG - chr2_3:40376434-40376453 None:intergenic 35.0%
! CGTTAATGTGATGATGTTCA+TGG - chr2_3:40376704-40376723 None:intergenic 35.0%
TGAACATCATCACATTAACG+AGG + chr2_3:40376704-40376723 Msa0291720:CDS 35.0%
CAAGCAATGATCAAAGGAAT+CGG + chr2_3:40376748-40376767 Msa0291720:CDS 35.0%
! TTTGATAATTGGGATGAGCT+TGG + chr2_3:40376873-40376892 Msa0291720:CDS 35.0%
CAAGTTCTTCATCTGTAGGA+TGG - chr2_3:40374875-40374894 None:intergenic 40.0%
CATATACTTGGAAGATCCCA+AGG - chr2_3:40374981-40375000 None:intergenic 40.0%
TATGCAGAAGCAAATGTAGC+TGG + chr2_3:40375716-40375735 Msa0291720:intron 40.0%
GTTAGACCAAATAGAGTCAC+TGG + chr2_3:40375794-40375813 Msa0291720:CDS 40.0%
GGAGAAGGAAATGATTGTGT+TGG + chr2_3:40375869-40375888 Msa0291720:CDS 40.0%
! GATTTTTGTCTATGGCATGC+AGG + chr2_3:40376506-40376525 Msa0291720:intron 40.0%
TCTATGGCATGCAGGAAATT+TGG + chr2_3:40376514-40376533 Msa0291720:intron 40.0%
CAAGTTCTTCATCTGTAGGA+TGG - chr2_3:40374875-40374894 None:intergenic 40.0%
CATATACTTGGAAGATCCCA+AGG - chr2_3:40374981-40375000 None:intergenic 40.0%
TATGCAGAAGCAAATGTAGC+TGG + chr2_3:40375716-40375735 Msa0291720:intron 40.0%
GTTAGACCAAATAGAGTCAC+TGG + chr2_3:40375794-40375813 Msa0291720:CDS 40.0%
GGAGAAGGAAATGATTGTGT+TGG + chr2_3:40375869-40375888 Msa0291720:CDS 40.0%
! GATTTTTGTCTATGGCATGC+AGG + chr2_3:40376506-40376525 Msa0291720:intron 40.0%
TCTATGGCATGCAGGAAATT+TGG + chr2_3:40376514-40376533 Msa0291720:intron 40.0%
! GATGATGATGTTCCACTTCC+TGG + chr2_3:40374840-40374859 Msa0291720:CDS 45.0%
TGGAAACGAAATCCAGGAAG+TGG - chr2_3:40374855-40374874 None:intergenic 45.0%
GTAGGATGGAAACGAAATCC+AGG - chr2_3:40374861-40374880 None:intergenic 45.0%
AATCATGATCACGTCTCCAG+CGG - chr2_3:40375312-40375331 None:intergenic 45.0%
TGATCAGCCATCAGCTACAA+AGG + chr2_3:40375463-40375482 Msa0291720:intron 45.0%
AAATGTAGCTGGAGCAGAGA+AGG + chr2_3:40375727-40375746 Msa0291720:CDS 45.0%
! TCTGGATTCTGGAAAGCAAC+TGG + chr2_3:40375818-40375837 Msa0291720:CDS 45.0%
! GTTTATTACCGTGGTAGTGC+TGG + chr2_3:40375908-40375927 Msa0291720:CDS 45.0%
! TACCTTTTCCAGCACTACCA+CGG - chr2_3:40375919-40375938 None:intergenic 45.0%
CACCAGAATGGGCAACAATA+TGG + chr2_3:40376635-40376654 Msa0291720:CDS 45.0%
CTCCATATTGTTGCCCATTC+TGG - chr2_3:40376640-40376659 None:intergenic 45.0%
!! AGATCAGTTGAGCTCTAGAG+TGG + chr2_3:40376779-40376798 Msa0291720:CDS 45.0%
ATGAGCTTGGATCAGTTGTG+AGG + chr2_3:40376886-40376905 Msa0291720:CDS 45.0%
! GATGATGATGTTCCACTTCC+TGG + chr2_3:40374840-40374859 Msa0291720:CDS 45.0%
TGGAAACGAAATCCAGGAAG+TGG - chr2_3:40374855-40374874 None:intergenic 45.0%
GTAGGATGGAAACGAAATCC+AGG - chr2_3:40374861-40374880 None:intergenic 45.0%
AATCATGATCACGTCTCCAG+CGG - chr2_3:40375312-40375331 None:intergenic 45.0%
TGATCAGCCATCAGCTACAA+AGG + chr2_3:40375463-40375482 Msa0291720:intron 45.0%
AAATGTAGCTGGAGCAGAGA+AGG + chr2_3:40375727-40375746 Msa0291720:CDS 45.0%
! TCTGGATTCTGGAAAGCAAC+TGG + chr2_3:40375818-40375837 Msa0291720:CDS 45.0%
! GTTTATTACCGTGGTAGTGC+TGG + chr2_3:40375908-40375927 Msa0291720:CDS 45.0%
! TACCTTTTCCAGCACTACCA+CGG - chr2_3:40375919-40375938 None:intergenic 45.0%
CACCAGAATGGGCAACAATA+TGG + chr2_3:40376635-40376654 Msa0291720:CDS 45.0%
CTCCATATTGTTGCCCATTC+TGG - chr2_3:40376640-40376659 None:intergenic 45.0%
!! AGATCAGTTGAGCTCTAGAG+TGG + chr2_3:40376779-40376798 Msa0291720:CDS 45.0%
ATGAGCTTGGATCAGTTGTG+AGG + chr2_3:40376886-40376905 Msa0291720:CDS 45.0%
!! AGAAAATAATAAAATAATTA+TGG - chr2_3:40376212-40376231 None:intergenic 5.0%
!! AGAAAATAATAAAATAATTA+TGG - chr2_3:40376212-40376231 None:intergenic 5.0%
CCAGAGCCAGTGACTCTATT+TGG - chr2_3:40375803-40375822 None:intergenic 50.0%
!! CCAAATAGAGTCACTGGCTC+TGG + chr2_3:40375800-40375819 Msa0291720:CDS 50.0%
! TACCGTGGTAGTGCTGGAAA+AGG + chr2_3:40375914-40375933 Msa0291720:CDS 50.0%
ACGTCAAGCCGTTCGTAACA+CGG + chr2_3:40376611-40376630 Msa0291720:CDS 50.0%
CCAGAGCCAGTGACTCTATT+TGG - chr2_3:40375803-40375822 None:intergenic 50.0%
!! CCAAATAGAGTCACTGGCTC+TGG + chr2_3:40375800-40375819 Msa0291720:CDS 50.0%
! TACCGTGGTAGTGCTGGAAA+AGG + chr2_3:40375914-40375933 Msa0291720:CDS 50.0%
ACGTCAAGCCGTTCGTAACA+CGG + chr2_3:40376611-40376630 Msa0291720:CDS 50.0%
!! GAGTCACTGGCTCTGGATTC+TGG + chr2_3:40375807-40375826 Msa0291720:CDS 55.0%
CGTCAAGCCGTTCGTAACAC+GGG + chr2_3:40376612-40376631 Msa0291720:CDS 55.0%
TCTGGTGCCCGTGTTACGAA+CGG - chr2_3:40376622-40376641 None:intergenic 55.0%
TCGTAACACGGGCACCAGAA+TGG + chr2_3:40376623-40376642 Msa0291720:CDS 55.0%
CGTAACACGGGCACCAGAAT+GGG + chr2_3:40376624-40376643 Msa0291720:CDS 55.0%
!! GAGTCACTGGCTCTGGATTC+TGG + chr2_3:40375807-40375826 Msa0291720:CDS 55.0%
CGTCAAGCCGTTCGTAACAC+GGG + chr2_3:40376612-40376631 Msa0291720:CDS 55.0%
TCTGGTGCCCGTGTTACGAA+CGG - chr2_3:40376622-40376641 None:intergenic 55.0%
TCGTAACACGGGCACCAGAA+TGG + chr2_3:40376623-40376642 Msa0291720:CDS 55.0%
CGTAACACGGGCACCAGAAT+GGG + chr2_3:40376624-40376643 Msa0291720:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 40374789 40376935 40374789 ID=Msa0291720;Name=Msa0291720
chr2_3 mRNA 40374789 40376935 40374789 ID=Msa0291720-mRNA-1;Parent=Msa0291720;Name=Msa0291720-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|310
chr2_3 exon 40374789 40374993 40374789 ID=Msa0291720-mRNA-1:exon:12938;Parent=Msa0291720-mRNA-1
chr2_3 exon 40375723 40376042 40375723 ID=Msa0291720-mRNA-1:exon:12939;Parent=Msa0291720-mRNA-1
chr2_3 exon 40376528 40376935 40376528 ID=Msa0291720-mRNA-1:exon:12940;Parent=Msa0291720-mRNA-1
chr2_3 CDS 40374789 40374993 40374789 ID=Msa0291720-mRNA-1:cds;Parent=Msa0291720-mRNA-1
chr2_3 CDS 40375723 40376042 40375723 ID=Msa0291720-mRNA-1:cds;Parent=Msa0291720-mRNA-1
chr2_3 CDS 40376528 40376935 40376528 ID=Msa0291720-mRNA-1:cds;Parent=Msa0291720-mRNA-1
Gene Sequence

>Msa0291720

ATGGGTATGAACGATGATTTCAACACGGATAATGAATATGTTGTAGATGGTGATGATGATGTTCCACTTCCTGGATTTCGTTTCCATCCTACAGATGAAGAACTTGTTACTTTTTATCTTAGAAGAAAACTTGACAAGAAACCTATTGCTATTGATCTCATCAAACAAATTGATATCTACAAATATGATCCTTGGGATCTTCCAAAAGCAAATGTAGCTGGAGCAGAGAAGGAATGTTACTTTTTTTGCCAAAGAGGAAGAAAATATAGGAACAGCGTTAGACCAAATAGAGTCACTGGCTCTGGATTCTGGAAAGCAACTGGAATAGATAAACCAATATACTCAAATGGAGGAGAAGGAAATGATTGTGTTGGACTCAAAAAAACACTTGTTTATTACCGTGGTAGTGCTGGAAAAGGTACCAAAACTGATTGGATGATGCATGAGTTTCGTCTTCCATCAAACATTGATGCCAAAACAAACATTTCCTATGCTAAGAATGATGTTGATTATGCTCATGAAGCTGAAATTTGGACATTGTGTAGAATTTTCAAAAGAAATGTATCACAAAGGAAACAAATACCAGAGATGAAACAATTAGCTAACAAACGTCAAGCCGTTCGTAACACGGGCACCAGAATGGGCAACAATATGGAGTTTAACACAAATCAACAAACATATATAAATTTCGGTGCAAGCCATGAACATCATCACATTAACGAGGACAAACCAGTCAATAATTATACAAGCAATGATCAAAGGAATCGGTTTCATGTAGATCAGTTGAGCTCTAGAGTGGCTCATCAACAAAATAATGTAACACCATCATCAAATTCTTCGATTAAGCAGGATGCTAATGAGTTGCTATCATTTGATAATTGGGATGAGCTTGGATCAGTTGTGAGGTTTGCTGTTGATTCACCTAGTTTGTAA
Protein sequence

>Msa0291720

MGMNDDFNTDNEYVVDGDDDVPLPGFRFHPTDEELVTFYLRRKLDKKPIAIDLIKQIDIYKYDPWDLPKANVAGAEKECYFFCQRGRKYRNSVRPNRVTGSGFWKATGIDKPIYSNGGEGNDCVGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNIDAKTNISYAKNDVDYAHEAEIWTLCRIFKRNVSQRKQIPEMKQLANKRQAVRNTGTRMGNNMEFNTNQQTYINFGASHEHHHINEDKPVNNYTSNDQRNRFHVDQLSSRVAHQQNNVTPSSNSSIKQDANELLSFDNWDELGSVVRFAVDSPSL*