AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1413060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1413060 MtrunA17_Chr2g0311651 83.013 312 53 0 1 312 1 312 0.0 547
Msa1413060 MtrunA17_Chr2g0311661 83.974 312 29 3 1 312 1 291 0.0 536
Msa1413060 MtrunA17_Chr5g0442771 53.741 294 126 8 18 308 14 300 6.35e-99 293
Msa1413060 MtrunA17_Chr5g0417001 51.417 247 103 7 16 260 6 237 3.43e-76 238
Msa1413060 MtrunA17_Chr8g0361731 48.996 249 110 7 19 260 11 249 1.92e-74 234
Msa1413060 MtrunA17_Chr6g0453131 58.011 181 57 5 12 186 6 173 9.86e-68 216
Msa1413060 MtrunA17_Chr2g0318101 46.286 175 83 4 24 194 17 184 1.19e-51 174
Msa1413060 MtrunA17_Chr3g0124761 52.941 170 66 6 24 193 9 164 1.63e-50 169
Msa1413060 MtrunA17_Chr2g0318081 51.744 172 67 4 24 195 18 173 4.13e-50 169
Msa1413060 MtrunA17_Chr4g0076731 50.888 169 66 4 18 186 50 201 4.47e-50 171
Msa1413060 MtrunA17_Chr8g0359921 53.143 175 62 6 24 195 16 173 7.32e-50 168
Msa1413060 MtrunA17_Chr4g0047841 46.237 186 85 4 24 197 17 199 2.83e-49 167
Msa1413060 MtrunA17_Chr7g0252971 47.929 169 75 5 24 187 10 170 2.86e-49 167
Msa1413060 MtrunA17_Chr8g0384721 52.761 163 64 6 24 186 9 158 3.64e-49 165
Msa1413060 MtrunA17_Chr5g0417791 50.000 164 68 4 24 186 5 155 1.48e-47 160
Msa1413060 MtrunA17_Chr5g0398971 47.093 172 71 5 21 189 7 161 1.73e-47 162
Msa1413060 MtrunA17_Chr7g0263931 39.614 207 108 4 24 230 13 202 2.63e-47 161
Msa1413060 MtrunA17_Chr4g0018391 46.199 171 72 4 21 189 7 159 2.66e-47 162
Msa1413060 MtrunA17_Chr3g0130731 48.837 172 73 7 15 186 1 157 7.71e-47 159
Msa1413060 MtrunA17_Chr4g0056541 45.304 181 79 5 21 199 7 169 1.34e-46 160
Msa1413060 MtrunA17_Chr2g0326361 47.500 160 74 4 24 183 16 165 1.77e-46 159
Msa1413060 MtrunA17_Chr8g0346001 45.402 174 86 4 15 186 9 175 2.04e-46 162
Msa1413060 MtrunA17_Chr2g0309891 35.052 291 157 9 24 311 8 269 2.41e-46 159
Msa1413060 MtrunA17_Chr4g0042561 49.080 163 71 4 24 186 11 161 2.44e-46 157
Msa1413060 MtrunA17_Chr3g0091921 45.198 177 83 3 16 192 10 172 6.71e-45 154
Msa1413060 MtrunA17_Chr7g0253011 46.821 173 81 4 20 192 16 177 9.01e-45 156
Msa1413060 MtrunA17_Chr6g0461661 43.814 194 94 4 10 200 3 184 2.00e-44 155
Msa1413060 MtrunA17_Chr4g0060931 45.087 173 80 4 20 192 16 173 3.30e-44 154
Msa1413060 MtrunA17_Chr6g0481091 40.609 197 96 4 24 214 8 189 9.58e-44 150
Msa1413060 MtrunA17_Chr7g0214071 45.198 177 77 5 16 192 10 166 2.54e-43 149
Msa1413060 MtrunA17_Chr5g0405211 37.864 206 109 3 15 218 1 189 3.20e-43 151
Msa1413060 MtrunA17_Chr6g0453451 45.556 180 81 6 15 192 12 176 3.24e-43 150
Msa1413060 MtrunA17_Chr3g0109821 45.402 174 80 3 24 196 8 167 3.58e-43 157
Msa1413060 MtrunA17_Chr8g0372121 45.029 171 74 4 21 189 6 158 4.52e-43 150
Msa1413060 MtrunA17_Chr2g0309331 41.081 185 90 5 17 199 6 173 6.34e-43 150
Msa1413060 MtrunA17_Chr6g0484441 41.714 175 83 4 18 192 2 157 4.60e-42 148
Msa1413060 MtrunA17_Chr5g0433781 46.386 166 73 4 24 188 8 158 5.79e-42 153
Msa1413060 MtrunA17_Chr3g0139331 35.185 270 143 6 17 279 6 250 1.80e-41 147
Msa1413060 MtrunA17_Chr8g0385991 44.068 177 87 5 13 189 6 170 2.08e-41 143
Msa1413060 MtrunA17_Chr2g0312321 37.872 235 118 7 24 258 13 219 2.89e-41 145
Msa1413060 MtrunA17_Chr7g0217721 41.361 191 102 4 25 210 22 207 3.57e-41 146
Msa1413060 MtrunA17_Chr1g0200561 41.667 180 85 4 9 186 7 168 8.37e-41 145
Msa1413060 MtrunA17_Chr2g0316971 44.118 170 82 4 18 187 20 176 4.77e-40 144
Msa1413060 MtrunA17_Chr4g0038751 40.741 189 88 4 19 201 12 182 8.25e-40 141
Msa1413060 MtrunA17_Chr1g0147421 42.353 170 81 4 24 192 29 182 5.78e-39 140
Msa1413060 MtrunA17_Chr5g0400461 41.714 175 83 4 17 187 2 161 6.28e-39 140
Msa1413060 MtrunA17_Chr1g0197361 43.860 171 78 4 24 192 10 164 8.48e-39 144
Msa1413060 MtrunA17_Chr3g0131911 38.318 214 106 5 13 226 6 193 9.11e-39 137
Msa1413060 MtrunA17_Chr4g0017921 42.197 173 69 5 21 186 8 156 1.19e-38 139
Msa1413060 MtrunA17_Chr4g0054791 41.765 170 86 4 24 192 8 165 2.25e-38 138
Msa1413060 MtrunA17_Chr1g0197351 44.242 165 82 3 24 187 44 199 1.82e-37 139
Msa1413060 MtrunA17_Chr1g0201021 48.855 131 62 2 23 152 20 146 3.61e-37 139
Msa1413060 MtrunA17_Chr3g0092671 43.860 171 78 4 24 192 7 161 3.80e-37 139
Msa1413060 MtrunA17_Chr1g0183741 33.636 220 123 4 24 243 12 208 1.12e-36 132
Msa1413060 MtrunA17_Chr7g0217711 47.101 138 68 2 25 162 22 154 1.86e-36 129
Msa1413060 MtrunA17_Chr5g0428991 41.808 177 84 6 12 186 16 175 2.89e-36 137
Msa1413060 MtrunA17_Chr3g0130101 41.818 165 80 4 23 186 8 157 5.10e-36 132
Msa1413060 MtrunA17_Chr3g0128151 40.110 182 90 5 8 187 9 173 9.87e-36 135
Msa1413060 MtrunA17_Chr3g0144271 47.482 139 69 3 24 161 25 160 1.29e-35 133
Msa1413060 MtrunA17_Chr8g0364791 40.476 168 78 4 23 186 7 156 1.96e-35 133
Msa1413060 MtrunA17_Chr8g0384201 39.286 168 80 4 23 186 7 156 1.25e-34 131
Msa1413060 MtrunA17_Chr7g0261411 40.994 161 77 3 24 184 12 154 3.91e-34 126
Msa1413060 MtrunA17_Chr3g0128111 40.244 164 82 3 25 187 45 193 4.97e-34 124
Msa1413060 MtrunA17_Chr8g0345671 46.617 133 65 5 20 150 10 138 6.38e-32 122
Msa1413060 MtrunA17_Chr4g0026141 41.520 171 83 7 19 184 2 160 4.19e-30 114
Msa1413060 MtrunA17_Chr8g0345691 39.286 168 80 6 19 184 10 157 1.44e-29 116
Msa1413060 MtrunA17_Chr2g0321631 37.952 166 87 5 24 184 6 160 1.87e-27 107
Msa1413060 MtrunA17_Chr7g0266701 34.270 178 102 6 19 191 2 169 2.02e-27 107
Msa1413060 MtrunA17_Chr8g0345711 37.870 169 97 7 19 184 10 173 2.78e-27 105
Msa1413060 MtrunA17_Chr3g0113001 31.739 230 129 6 75 290 17 232 2.80e-26 105
Msa1413060 MtrunA17_Chr4g0050701 32.317 164 95 4 24 187 13 160 6.57e-25 99.4
Msa1413060 MtrunA17_Chr2g0321741 40.367 109 61 1 42 150 12 116 1.18e-24 102
Msa1413060 MtrunA17_Chr8g0345731 34.194 155 95 5 19 169 22 173 3.54e-23 94.0
Msa1413060 MtrunA17_Chr8g0345721 36.306 157 66 4 25 150 38 191 8.74e-23 94.0
Msa1413060 MtrunA17_Chr8g0345741 40.000 120 67 4 33 150 2 118 2.35e-20 85.9
Msa1413060 MtrunA17_Chr3g0113031 39.200 125 64 4 87 210 4 117 8.98e-20 87.0
Msa1413060 MtrunA17_Chr8g0384351 29.101 189 95 8 24 212 12 161 3.96e-19 83.6
Msa1413060 MtrunA17_Chr7g0243371 50.000 80 38 1 76 155 17 94 9.78e-19 80.5
Msa1413060 MtrunA17_Chr7g0251651 36.429 140 73 6 17 150 12 141 1.00e-18 82.4
Msa1413060 MtrunA17_Chr8g0345701 37.838 148 70 8 25 155 10 152 3.04e-18 80.9
Msa1413060 MtrunA17_Chr7g0251671 32.168 143 87 6 14 154 3 137 1.71e-17 78.6
Msa1413060 MtrunA17_Chr7g0251661 34.058 138 83 5 14 150 3 133 2.10e-17 78.2
Msa1413060 MtrunA17_Chr3g0130321 29.940 167 97 6 24 185 9 160 5.42e-17 78.2
Msa1413060 MtrunA17_Chr1g0194791 65.957 47 15 1 24 69 48 94 1.61e-15 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1413060 AT2G43000.1 70.115 174 37 3 18 191 14 172 4.70e-84 254
Msa1413060 AT3G12910.1 48.693 306 130 11 10 306 9 296 3.40e-82 251
Msa1413060 AT5G39820.1 53.636 220 81 6 15 217 13 228 5.01e-72 226
Msa1413060 AT1G26870.1 61.143 175 58 5 16 186 7 175 3.10e-69 221
Msa1413060 AT3G04070.1 48.588 177 77 4 24 187 12 187 6.93e-53 177
Msa1413060 AT3G04070.2 50.909 165 75 4 24 187 12 171 8.07e-53 177
Msa1413060 AT1G61110.1 46.193 197 91 6 8 200 3 188 1.31e-52 176
Msa1413060 AT2G02450.1 52.439 164 61 4 23 186 52 198 2.54e-51 174
Msa1413060 AT2G02450.2 52.439 164 61 4 23 186 52 198 2.84e-51 174
Msa1413060 AT3G15510.1 48.235 170 77 4 26 191 21 183 3.00e-50 171
Msa1413060 AT5G08790.1 42.273 220 103 8 25 239 10 210 4.15e-50 168
Msa1413060 AT1G69490.1 50.920 163 68 4 24 186 11 161 8.64e-50 166
Msa1413060 AT1G01720.1 50.867 173 71 5 24 195 9 168 1.25e-49 167
Msa1413060 AT5G63790.1 46.277 188 85 7 25 210 53 226 1.76e-49 167
Msa1413060 AT5G63790.2 46.277 188 85 7 25 210 63 236 1.88e-49 167
Msa1413060 AT1G52890.1 48.404 188 76 5 24 209 16 184 7.69e-49 166
Msa1413060 AT3G15500.1 50.581 172 65 4 24 193 16 169 1.67e-48 165
Msa1413060 AT4G27410.2 49.412 170 70 4 24 193 16 169 1.80e-47 161
Msa1413060 AT5G07680.2 36.397 272 154 7 20 290 2 255 4.14e-47 161
Msa1413060 AT5G07680.1 36.232 276 157 7 16 290 12 269 4.69e-47 161
Msa1413060 AT5G61430.1 47.727 176 76 5 20 195 15 174 4.80e-47 161
Msa1413060 AT1G77450.1 49.123 171 72 7 24 193 12 168 1.34e-46 158
Msa1413060 AT1G71930.2 38.655 238 120 5 24 258 11 225 1.76e-46 159
Msa1413060 AT1G71930.1 38.655 238 120 5 24 258 11 225 1.76e-46 159
Msa1413060 AT2G46770.1 44.318 176 89 4 15 186 10 180 2.63e-46 160
Msa1413060 AT2G43000.2 71.963 107 16 2 85 191 2 94 3.12e-46 155
Msa1413060 AT1G12260.2 44.886 176 77 4 21 194 7 164 6.92e-46 159
Msa1413060 AT1G12260.1 44.886 176 77 4 21 194 7 164 1.01e-45 159
Msa1413060 AT5G62380.2 45.238 168 73 4 24 189 9 159 2.50e-45 157
Msa1413060 AT5G62380.1 45.238 168 73 4 24 189 9 159 2.50e-45 157
Msa1413060 AT1G52880.1 51.829 164 75 3 26 189 21 180 3.16e-45 156
Msa1413060 AT4G36160.1 45.402 174 75 4 15 186 4 159 8.31e-45 157
Msa1413060 AT4G36160.3 45.402 174 75 4 15 186 4 159 8.31e-45 157
Msa1413060 AT3G04060.1 47.090 189 79 8 20 202 19 192 8.62e-45 155
Msa1413060 AT4G36160.2 45.402 174 75 4 15 186 8 163 9.65e-45 157
Msa1413060 AT5G13180.1 49.068 161 64 3 24 184 16 158 1.03e-44 153
Msa1413060 AT5G18270.1 47.929 169 72 5 20 187 20 173 2.55e-44 154
Msa1413060 AT4G27410.3 45.699 186 70 5 24 193 16 186 3.10e-44 154
Msa1413060 AT1G65910.1 44.444 189 86 5 24 210 8 179 3.11e-44 160
Msa1413060 AT5G39610.1 46.243 173 78 4 20 192 19 176 3.65e-44 152
Msa1413060 AT2G17040.1 32.639 288 159 8 20 302 4 261 4.47e-44 152
Msa1413060 AT1G62700.1 45.029 171 74 4 21 189 7 159 7.66e-44 154
Msa1413060 AT1G62700.2 45.029 171 74 4 21 189 7 159 7.66e-44 154
Msa1413060 AT5G18270.2 47.337 169 73 5 20 187 20 173 9.17e-44 153
Msa1413060 AT3G18400.1 44.571 175 79 5 18 192 2 158 1.44e-43 152
Msa1413060 AT2G33480.1 47.590 166 68 4 24 189 17 163 1.48e-43 150
Msa1413060 AT2G18060.3 44.444 171 75 4 21 189 9 161 1.56e-43 153
Msa1413060 AT2G18060.1 44.444 171 75 4 21 189 9 161 1.56e-43 153
Msa1413060 AT3G17730.1 45.455 165 74 3 24 187 8 157 1.64e-43 149
Msa1413060 AT3G61910.1 43.503 177 91 4 15 187 5 176 1.88e-43 152
Msa1413060 AT2G33480.2 47.590 166 66 4 24 189 17 161 2.22e-43 150
Msa1413060 AT3G12977.1 38.723 235 108 9 24 256 20 220 4.87e-43 149
Msa1413060 AT1G54330.1 44.886 176 74 4 24 198 8 161 3.66e-42 148
Msa1413060 AT1G76420.1 45.122 164 73 4 24 186 24 171 4.02e-42 149
Msa1413060 AT2G24430.2 42.697 178 85 4 18 194 12 173 4.03e-42 148
Msa1413060 AT2G24430.1 42.697 178 85 4 18 194 12 173 4.03e-42 148
Msa1413060 AT3G29035.1 51.333 150 65 4 20 168 23 165 5.17e-42 148
Msa1413060 AT5G17260.1 43.529 170 81 4 24 192 8 163 8.85e-42 150
Msa1413060 AT3G03200.1 44.706 170 79 4 24 192 8 163 9.00e-42 151
Msa1413060 AT5G66300.1 42.614 176 80 5 24 194 14 173 1.01e-41 146
Msa1413060 AT3G10500.1 44.706 170 78 3 24 192 11 165 4.88e-41 150
Msa1413060 AT1G79580.3 42.442 172 79 5 17 186 13 166 1.03e-40 145
Msa1413060 AT1G79580.5 42.442 172 79 5 17 186 13 166 1.03e-40 145
Msa1413060 AT1G79580.4 42.442 172 79 5 17 186 13 166 1.03e-40 145
Msa1413060 AT1G79580.2 42.442 172 79 5 17 186 13 166 1.03e-40 145
Msa1413060 AT1G79580.1 42.442 172 79 5 17 186 13 166 1.03e-40 145
Msa1413060 AT1G32770.1 41.304 184 90 6 15 191 10 182 3.01e-40 144
Msa1413060 AT1G32510.1 41.143 175 89 3 24 194 8 172 3.97e-40 142
Msa1413060 AT3G15170.1 43.182 176 87 4 18 192 16 179 6.41e-40 142
Msa1413060 AT5G46590.2 49.231 130 62 2 24 152 8 134 7.05e-40 141
Msa1413060 AT5G04410.1 44.848 165 75 3 24 187 11 160 1.06e-39 146
Msa1413060 AT5G46590.1 49.231 130 62 2 24 152 8 134 1.16e-39 141
Msa1413060 AT3G10480.1 43.636 165 78 4 24 187 29 179 1.45e-39 144
Msa1413060 AT1G56010.2 37.931 232 124 7 24 253 21 234 1.53e-39 141
Msa1413060 AT4G17980.1 43.023 172 85 5 17 187 2 161 3.38e-39 139
Msa1413060 AT3G10480.2 43.636 165 77 4 24 187 29 178 3.58e-39 143
Msa1413060 AT4G10350.1 42.690 171 79 5 21 188 9 163 3.92e-39 141
Msa1413060 AT4G17980.2 43.636 165 81 4 24 187 8 161 5.45e-39 139
Msa1413060 AT2G27300.1 46.094 128 65 1 23 150 15 138 6.42e-38 137
Msa1413060 AT5G53950.1 42.442 172 87 3 17 188 12 171 1.12e-37 138
Msa1413060 AT1G33280.1 41.818 165 76 3 24 186 10 156 1.17e-37 136
Msa1413060 AT5G09330.5 40.000 165 83 3 24 187 8 157 1.17e-37 140
Msa1413060 AT5G09330.2 40.000 165 83 3 24 187 8 157 1.17e-37 140
Msa1413060 AT5G09330.4 40.000 165 83 3 24 187 8 157 1.17e-37 140
Msa1413060 AT5G09330.3 40.000 165 83 3 24 187 8 157 1.17e-37 140
Msa1413060 AT5G09330.1 40.000 165 83 3 24 187 8 157 1.17e-37 140
Msa1413060 AT3G10490.1 40.936 171 74 4 24 187 29 179 2.06e-37 134
Msa1413060 AT3G44290.2 42.188 128 70 1 23 150 15 138 6.10e-37 132
Msa1413060 AT1G34190.1 42.424 165 79 4 24 187 18 167 7.90e-37 139
Msa1413060 AT3G10490.2 40.936 171 74 4 24 187 29 179 1.14e-36 137
Msa1413060 AT5G22290.1 42.969 128 69 1 23 150 22 145 1.85e-36 134
Msa1413060 AT4G35580.1 43.529 170 77 5 19 186 7 159 2.09e-36 137
Msa1413060 AT4G35580.2 43.529 170 77 5 19 186 7 159 2.19e-36 137
Msa1413060 AT4G35580.3 43.529 170 77 5 19 186 7 159 2.21e-36 137
Msa1413060 AT3G44290.1 42.188 128 70 1 23 150 15 138 3.96e-36 133
Msa1413060 AT1G34180.3 49.231 130 61 2 24 152 18 143 4.26e-36 135
Msa1413060 AT1G34180.1 49.231 130 61 2 24 152 18 143 1.33e-35 135
Msa1413060 AT5G64060.1 39.394 165 84 3 24 187 8 157 1.33e-35 132
Msa1413060 AT1G33060.1 48.485 132 62 3 21 151 24 150 2.30e-35 135
Msa1413060 AT1G33060.2 48.485 132 62 3 21 151 24 150 2.33e-35 135
Msa1413060 AT3G10480.3 37.879 198 75 5 24 187 29 212 3.10e-34 131
Msa1413060 AT1G34180.4 45.070 142 61 2 24 152 18 155 3.18e-34 130
Msa1413060 AT1G34180.2 45.070 142 61 2 24 152 18 155 9.26e-34 130
Msa1413060 AT5G24590.2 41.916 167 79 5 23 186 13 164 1.69e-33 128
Msa1413060 AT3G49530.2 39.645 169 86 5 19 186 11 164 1.74e-33 127
Msa1413060 AT3G49530.1 39.645 169 86 5 19 186 11 164 6.43e-33 127
Msa1413060 AT5G04395.1 40.278 144 73 2 24 155 30 172 5.61e-31 115
Msa1413060 AT4G28530.1 40.884 181 69 6 24 186 12 172 6.28e-31 119
Msa1413060 AT5G64530.1 34.884 172 94 6 24 192 5 161 3.41e-29 110
Msa1413060 AT5G61430.2 47.934 121 49 3 75 195 5 111 4.73e-29 112
Msa1413060 AT3G12977.2 38.624 189 79 9 70 256 14 167 1.38e-28 110
Msa1413060 AT5G22380.1 30.870 230 131 7 19 235 3 217 2.55e-28 109
Msa1413060 AT5G64530.2 40.769 130 62 4 24 153 5 119 4.34e-27 104
Msa1413060 AT3G44350.2 32.558 258 139 13 25 273 8 239 8.24e-27 105
Msa1413060 AT1G32870.2 46.923 130 62 3 24 152 12 135 9.61e-27 110
Msa1413060 AT1G32870.1 46.923 130 62 3 24 152 12 135 1.11e-26 110
Msa1413060 AT1G32870.3 46.923 130 62 3 24 152 48 171 1.57e-26 109
Msa1413060 AT3G44350.1 42.537 134 64 5 25 151 8 135 4.59e-26 101
Msa1413060 AT4G01550.1 40.909 132 75 3 23 152 5 135 6.93e-24 101
Msa1413060 AT1G56010.1 35.676 185 99 6 70 253 2 167 9.51e-24 98.2
Msa1413060 AT4G01540.4 42.105 133 73 4 23 152 5 136 1.94e-23 99.8
Msa1413060 AT4G01540.2 42.105 133 73 4 23 152 5 136 2.91e-23 99.4
Msa1413060 AT4G01540.3 42.105 133 73 4 23 152 5 136 3.34e-23 99.4
Msa1413060 AT4G01540.1 42.105 133 73 4 23 152 5 136 4.04e-23 99.4
Msa1413060 AT4G01520.1 40.458 131 74 4 25 152 7 136 4.21e-23 97.4
Msa1413060 AT2G33480.3 44.348 115 49 3 75 189 7 106 1.00e-22 94.4
Msa1413060 AT4G10350.2 42.105 114 50 3 76 188 18 116 4.73e-20 88.6
Msa1413060 AT3G04420.2 38.760 129 72 4 25 150 6 130 5.02e-20 88.6
Msa1413060 AT1G02230.1 39.850 133 73 5 25 154 6 134 9.77e-20 89.0
Msa1413060 AT1G02250.1 40.310 129 70 5 25 150 6 130 1.20e-19 88.6
Msa1413060 AT3G04420.1 38.760 129 72 4 25 150 6 130 1.29e-19 88.2
Msa1413060 AT5G14000.2 31.250 160 100 4 9 166 3 154 1.39e-19 84.3
Msa1413060 AT5G14000.1 31.288 163 102 4 9 169 3 157 6.91e-19 83.6
Msa1413060 AT4G28530.2 42.991 107 42 3 24 113 12 116 4.21e-17 80.9
Msa1413060 AT5G50820.1 35.556 135 72 5 24 155 19 141 5.98e-17 78.2
Msa1413060 AT1G02220.1 37.209 129 71 5 25 150 6 127 1.17e-15 77.4
Msa1413060 AT2G18060.2 39.326 89 37 2 101 189 2 73 1.40e-14 73.2
Msa1413060 AT1G01010.1 36.567 134 74 6 25 150 6 136 6.76e-14 72.4
Msa1413060 AT3G56530.1 29.448 163 96 4 24 184 54 199 3.30e-13 69.7

Find 56 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATGGCATGCAGGAAATT+TGG 0.174862 tig0024002:+36937 Msa1413060:intron
TCTCCTCCATTTGAGTATAT+TGG 0.237105 tig0024002:-36274 None:intergenic
AGTTGTTATCATTTGATAAC+TGG 0.242113 tig0024002:+37291 Msa1413060:CDS
CTCCATATTGTTGCCCATTC+TGG 0.244126 tig0024002:-37060 None:intergenic
GAGTCACTGGCTCTGGATTC+TGG 0.244802 tig0024002:+36230 Msa1413060:CDS
TAACACCATCATCAAATCTT+TGG 0.273173 tig0024002:+37249 Msa1413060:CDS
AGCATAGGAAATGTTTGTTT+TGG 0.292918 tig0024002:-36413 None:intergenic
GATGATGATGTTCCACTTCC+TGG 0.327314 tig0024002:+35263 Msa1413060:CDS
CCAGAGCCAGTGACTCTATT+TGG 0.333205 tig0024002:-36223 None:intergenic
CAACAAACATATATAAATTT+CGG 0.353707 tig0024002:+37095 Msa1413060:CDS
TTAGCTAATTGTTTCATCTC+TGG 0.354898 tig0024002:-37008 None:intergenic
ATGCATCATCCAATCAGTTT+TGG 0.361511 tig0024002:-36362 None:intergenic
CACCAGAATGGGCAACAATA+TGG 0.367590 tig0024002:+37058 Msa1413060:CDS
TTGATGAGATCAATAGCAAT+AGG 0.399965 tig0024002:-35353 None:intergenic
CGTTAATGTGATGATGTTCA+TGG 0.410482 tig0024002:-37124 None:intergenic
GCCAAAGAGGAAGAAAATAT+AGG 0.410785 tig0024002:+36188 Msa1413060:CDS
CCAAATAGAGTCACTGGCTC+TGG 0.412912 tig0024002:+36223 Msa1413060:CDS
ATATCTACAAATATGATCCT+TGG 0.441210 tig0024002:+35384 Msa1413060:CDS
CGTAACACGGGCACCAGAAT+GGG 0.442225 tig0024002:+37047 Msa1413060:CDS
GTTTATTACCGTGGTAGTGC+TGG 0.452034 tig0024002:+36331 Msa1413060:CDS
TCTGGATTCTGGAAAGCAAC+TGG 0.467422 tig0024002:+36241 Msa1413060:CDS
GATAAACCAATATACTCAAA+TGG 0.472311 tig0024002:+36268 Msa1413060:CDS
TCGTAACACGGGCACCAGAA+TGG 0.473256 tig0024002:+37046 Msa1413060:CDS
ATCAAATCTTTGGATTAAGC+AGG 0.475836 tig0024002:+37259 Msa1413060:CDS
TTTGATAACTGGGATGAGCT+TGG 0.483520 tig0024002:+37302 Msa1413060:CDS
TATCTACAAATATGATCCTT+GGG 0.485955 tig0024002:+35385 Msa1413060:CDS
GATAATGAATATGTTGTAGA+TGG 0.489983 tig0024002:+35239 Msa1413060:CDS
GAAAAGGTACCAAAACTGAT+TGG 0.493324 tig0024002:+36353 Msa1413060:CDS
AATTATATCAATTACAAACT+AGG 0.502539 tig0024002:-37353 None:intergenic
TTGCTTGTATAATTATTGAC+TGG 0.508672 tig0024002:-37155 None:intergenic
AAATGTAGCTGGAGCAGAGA+AGG 0.513323 tig0024002:+36150 Msa1413060:CDS
CAAGCAATGATCAAAGGAAT+CGG 0.513538 tig0024002:+37171 Msa1413060:CDS
TACCGTGGTAGTGCTGGAAA+AGG 0.513961 tig0024002:+36337 Msa1413060:CDS
TATGCAGAAGCAAATGTAGC+TGG 0.529620 tig0024002:+36139 Msa1413060:intron
TGGAAACGAAATCCAGGAAG+TGG 0.529636 tig0024002:-35275 None:intergenic
GTAACAAGTTCTTCATCTGT+AGG 0.530457 tig0024002:-35299 None:intergenic
CAAGTTCTTCATCTGTAGGA+TGG 0.540071 tig0024002:-35295 None:intergenic
ATATACTCAAATGGAGGAGA+AGG 0.541852 tig0024002:+36277 Msa1413060:CDS
ACGTCAAGCCGTTCGTAACA+CGG 0.550583 tig0024002:+37034 Msa1413060:CDS
GTTAGACCAAATAGAGTCAC+TGG 0.561770 tig0024002:+36217 Msa1413060:CDS
TCTGGTGCCCGTGTTACGAA+CGG 0.565365 tig0024002:-37042 None:intergenic
GTAGGATGGAAACGAAATCC+AGG 0.566609 tig0024002:-35281 None:intergenic
CGTCAAGCCGTTCGTAACAC+GGG 0.566912 tig0024002:+37035 Msa1413060:CDS
ATCAACATCATTCTTAGCAT+AGG 0.578970 tig0024002:-36428 None:intergenic
ATTATACAAGCAATGATCAA+AGG 0.581251 tig0024002:+37165 Msa1413060:CDS
GGAGAAGGAAATGATTGTGT+TGG 0.583944 tig0024002:+36292 Msa1413060:CDS
GTTGTTATCATTTGATAACT+GGG 0.587359 tig0024002:+37292 Msa1413060:CDS
CATATACTTGGAAGATCCCA+AGG 0.592043 tig0024002:-35401 None:intergenic
TTAATCCAAAGATTTGATGA+TGG 0.593399 tig0024002:-37254 None:intergenic
AAAACACTTGTTTATTACCG+TGG 0.603507 tig0024002:+36322 Msa1413060:CDS
ATGAGCTTGGATCAGTTGTG+AGG 0.626748 tig0024002:+37315 Msa1413060:CDS
TCAAAAGAAATGTATCACAA+AGG 0.638749 tig0024002:+36976 Msa1413060:CDS
AAACCAATATACTCAAATGG+AGG 0.641619 tig0024002:+36271 Msa1413060:CDS
AGATCAGTTGAGCTCTAGAG+TGG 0.646085 tig0024002:+37202 Msa1413060:CDS
TATGAACGATGATTTCAACA+CGG 0.741102 tig0024002:+35217 Msa1413060:CDS
TGAACATCATCACATTAACG+AGG 0.762973 tig0024002:+37127 Msa1413060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATAATTATGGATTAAA+GGG - tig0024002:36626-36645 None:intergenic 10.0%
!!! ATAAAATAATTATGGATTAA+AGG - tig0024002:36627-36646 None:intergenic 10.0%
!!! ATTATTTTATTATTTTCTCT+TGG + tig0024002:36637-36656 Msa1413060:intron 10.0%
!! TTTAAAAAATGTTAATAGAA+AGG + tig0024002:36701-36720 Msa1413060:intron 10.0%
!!! TAAAATAATTATGGATTAAA+GGG - tig0024002:36626-36645 None:intergenic 10.0%
!!! ATAAAATAATTATGGATTAA+AGG - tig0024002:36627-36646 None:intergenic 10.0%
!!! ATTATTTTATTATTTTCTCT+TGG + tig0024002:36637-36656 Msa1413060:intron 10.0%
!! TTTAAAAAATGTTAATAGAA+AGG + tig0024002:36701-36720 Msa1413060:intron 10.0%
!! CAATACTTAGATTTATAAAA+AGG - tig0024002:35773-35792 None:intergenic 15.0%
!!! TAGCTATGAAAATTTTAAAA+TGG + tig0024002:35820-35839 Msa1413060:intron 15.0%
!! ATAATGAAAAGGAAAAATAA+AGG - tig0024002:36086-36105 None:intergenic 15.0%
!! TATAGTTATCTATAATGAAA+AGG - tig0024002:36097-36116 None:intergenic 15.0%
!! ATATTCAAACAATAAAAGAT+TGG - tig0024002:36491-36510 None:intergenic 15.0%
!! CAACAAACATATATAAATTT+CGG + tig0024002:37095-37114 Msa1413060:CDS 15.0%
!! CAATACTTAGATTTATAAAA+AGG - tig0024002:35773-35792 None:intergenic 15.0%
!!! TAGCTATGAAAATTTTAAAA+TGG + tig0024002:35820-35839 Msa1413060:intron 15.0%
!! ATAATGAAAAGGAAAAATAA+AGG - tig0024002:36086-36105 None:intergenic 15.0%
!! TATAGTTATCTATAATGAAA+AGG - tig0024002:36097-36116 None:intergenic 15.0%
!! ATATTCAAACAATAAAAGAT+TGG - tig0024002:36491-36510 None:intergenic 15.0%
!! CAACAAACATATATAAATTT+CGG + tig0024002:37095-37114 Msa1413060:CDS 15.0%
!!! AATATTTTTCAGTGTAATTG+AGG - tig0024002:36014-36033 None:intergenic 20.0%
!! ATATATAGAGAGAATTAAGT+GGG - tig0024002:36041-36060 None:intergenic 20.0%
!! TATATATAGAGAGAATTAAG+TGG - tig0024002:36042-36061 None:intergenic 20.0%
!!! GTTTGAATATATGTTGATTT+TGG + tig0024002:36501-36520 Msa1413060:intron 20.0%
!! TGGATTAATTATTGTGATAA+TGG - tig0024002:36739-36758 None:intergenic 20.0%
!!! AGATACAAAATTTTACAAGT+TGG - tig0024002:36759-36778 None:intergenic 20.0%
!! TATTACTAATAGGATTACAA+GGG + tig0024002:36826-36845 Msa1413060:intron 20.0%
!!! AATATTTTTCAGTGTAATTG+AGG - tig0024002:36014-36033 None:intergenic 20.0%
!! ATATATAGAGAGAATTAAGT+GGG - tig0024002:36041-36060 None:intergenic 20.0%
!! TATATATAGAGAGAATTAAG+TGG - tig0024002:36042-36061 None:intergenic 20.0%
!!! GTTTGAATATATGTTGATTT+TGG + tig0024002:36501-36520 Msa1413060:intron 20.0%
!! TGGATTAATTATTGTGATAA+TGG - tig0024002:36739-36758 None:intergenic 20.0%
!!! AGATACAAAATTTTACAAGT+TGG - tig0024002:36759-36778 None:intergenic 20.0%
!! TATTACTAATAGGATTACAA+GGG + tig0024002:36826-36845 Msa1413060:intron 20.0%
! GATAATGAATATGTTGTAGA+TGG + tig0024002:35239-35258 Msa1413060:CDS 25.0%
! ATATCTACAAATATGATCCT+TGG + tig0024002:35384-35403 Msa1413060:CDS 25.0%
! TATCTACAAATATGATCCTT+GGG + tig0024002:35385-35404 Msa1413060:CDS 25.0%
! TCTAAATGACACAAACTATA+AGG + tig0024002:35561-35580 Msa1413060:intron 25.0%
! ACACAAACTATAAGGAAAAA+TGG + tig0024002:35569-35588 Msa1413060:intron 25.0%
! CTTGAATGTAGTTATAACTA+AGG - tig0024002:35660-35679 None:intergenic 25.0%
! CTTAGTTATAACTACATTCA+AGG + tig0024002:35658-35677 Msa1413060:intron 25.0%
!! TTTTGTCTTAATCATCTTTC+TGG + tig0024002:35687-35706 Msa1413060:intron 25.0%
! TGATCATGATTATCAAGAAT+TGG + tig0024002:35744-35763 Msa1413060:intron 25.0%
! GATAAACCAATATACTCAAA+TGG + tig0024002:36268-36287 Msa1413060:CDS 25.0%
!!! TAAGCAAGAGTATTACTAAT+AGG + tig0024002:36816-36835 Msa1413060:intron 25.0%
! GTATTACTAATAGGATTACA+AGG + tig0024002:36825-36844 Msa1413060:intron 25.0%
!! TGTTTCATGTTGATTGTAAT+GGG - tig0024002:36861-36880 None:intergenic 25.0%
!! ATGTTTCATGTTGATTGTAA+TGG - tig0024002:36862-36881 None:intergenic 25.0%
! TCAAAAGAAATGTATCACAA+AGG + tig0024002:36976-36995 Msa1413060:CDS 25.0%
! TTGCTTGTATAATTATTGAC+TGG - tig0024002:37158-37177 None:intergenic 25.0%
! ATTATACAAGCAATGATCAA+AGG + tig0024002:37165-37184 Msa1413060:CDS 25.0%
! TTAATCCAAAGATTTGATGA+TGG - tig0024002:37257-37276 None:intergenic 25.0%
!! AGTTGTTATCATTTGATAAC+TGG + tig0024002:37291-37310 Msa1413060:CDS 25.0%
!! GTTGTTATCATTTGATAACT+GGG + tig0024002:37292-37311 Msa1413060:CDS 25.0%
! GATAATGAATATGTTGTAGA+TGG + tig0024002:35239-35258 Msa1413060:CDS 25.0%
! ATATCTACAAATATGATCCT+TGG + tig0024002:35384-35403 Msa1413060:CDS 25.0%
! TATCTACAAATATGATCCTT+GGG + tig0024002:35385-35404 Msa1413060:CDS 25.0%
! TCTAAATGACACAAACTATA+AGG + tig0024002:35561-35580 Msa1413060:intron 25.0%
! ACACAAACTATAAGGAAAAA+TGG + tig0024002:35569-35588 Msa1413060:intron 25.0%
! CTTGAATGTAGTTATAACTA+AGG - tig0024002:35660-35679 None:intergenic 25.0%
! CTTAGTTATAACTACATTCA+AGG + tig0024002:35658-35677 Msa1413060:intron 25.0%
!! TTTTGTCTTAATCATCTTTC+TGG + tig0024002:35687-35706 Msa1413060:intron 25.0%
! TGATCATGATTATCAAGAAT+TGG + tig0024002:35744-35763 Msa1413060:intron 25.0%
! GATAAACCAATATACTCAAA+TGG + tig0024002:36268-36287 Msa1413060:CDS 25.0%
!!! TAAGCAAGAGTATTACTAAT+AGG + tig0024002:36816-36835 Msa1413060:intron 25.0%
! GTATTACTAATAGGATTACA+AGG + tig0024002:36825-36844 Msa1413060:intron 25.0%
!! TGTTTCATGTTGATTGTAAT+GGG - tig0024002:36861-36880 None:intergenic 25.0%
!! ATGTTTCATGTTGATTGTAA+TGG - tig0024002:36862-36881 None:intergenic 25.0%
! TCAAAAGAAATGTATCACAA+AGG + tig0024002:36976-36995 Msa1413060:CDS 25.0%
! TTGCTTGTATAATTATTGAC+TGG - tig0024002:37158-37177 None:intergenic 25.0%
! ATTATACAAGCAATGATCAA+AGG + tig0024002:37165-37184 Msa1413060:CDS 25.0%
! TTAATCCAAAGATTTGATGA+TGG - tig0024002:37257-37276 None:intergenic 25.0%
!! AGTTGTTATCATTTGATAAC+TGG + tig0024002:37291-37310 Msa1413060:CDS 25.0%
!! GTTGTTATCATTTGATAACT+GGG + tig0024002:37292-37311 Msa1413060:CDS 25.0%
TATGAACGATGATTTCAACA+CGG + tig0024002:35217-35236 Msa1413060:CDS 30.0%
TTGATGAGATCAATAGCAAT+AGG - tig0024002:35356-35375 None:intergenic 30.0%
GTTAGATGACAACATATACT+TGG - tig0024002:35416-35435 None:intergenic 30.0%
TAGAAGAAATCACTATCGAA+AGG + tig0024002:35534-35553 Msa1413060:intron 30.0%
AGAAGAAATCACTATCGAAA+GGG + tig0024002:35535-35554 Msa1413060:intron 30.0%
TAATCAAACTATGTGTGTCT+GGG - tig0024002:35624-35643 None:intergenic 30.0%
ATAATCAAACTATGTGTGTC+TGG - tig0024002:35625-35644 None:intergenic 30.0%
AATTATTCCTTTGTAGCTGA+TGG - tig0024002:35896-35915 None:intergenic 30.0%
!!! TGTTACTTTTTTTGCCAAAG+AGG + tig0024002:36175-36194 Msa1413060:CDS 30.0%
! TCCTATATTTTCTTCCTCTT+TGG - tig0024002:36192-36211 None:intergenic 30.0%
AAACCAATATACTCAAATGG+AGG + tig0024002:36271-36290 Msa1413060:CDS 30.0%
AAAACACTTGTTTATTACCG+TGG + tig0024002:36322-36341 Msa1413060:CDS 30.0%
! AGCATAGGAAATGTTTGTTT+TGG - tig0024002:36416-36435 None:intergenic 30.0%
ATCAACATCATTCTTAGCAT+AGG - tig0024002:36431-36450 None:intergenic 30.0%
AAACAATAAAAGATTGGTGC+TGG - tig0024002:36485-36504 None:intergenic 30.0%
! GTCCTAATGATTTTTGTCTA+TGG + tig0024002:36921-36940 Msa1413060:intron 30.0%
TGCCATAGACAAAAATCATT+AGG - tig0024002:36926-36945 None:intergenic 30.0%
TTAGCTAATTGTTTCATCTC+TGG - tig0024002:37011-37030 None:intergenic 30.0%
TAACACCATCATCAAATCTT+TGG + tig0024002:37249-37268 Msa1413060:CDS 30.0%
ATCAAATCTTTGGATTAAGC+AGG + tig0024002:37259-37278 Msa1413060:CDS 30.0%
TATGAACGATGATTTCAACA+CGG + tig0024002:35217-35236 Msa1413060:CDS 30.0%
TTGATGAGATCAATAGCAAT+AGG - tig0024002:35356-35375 None:intergenic 30.0%
GTTAGATGACAACATATACT+TGG - tig0024002:35416-35435 None:intergenic 30.0%
TAGAAGAAATCACTATCGAA+AGG + tig0024002:35534-35553 Msa1413060:intron 30.0%
AGAAGAAATCACTATCGAAA+GGG + tig0024002:35535-35554 Msa1413060:intron 30.0%
TAATCAAACTATGTGTGTCT+GGG - tig0024002:35624-35643 None:intergenic 30.0%
ATAATCAAACTATGTGTGTC+TGG - tig0024002:35625-35644 None:intergenic 30.0%
AATTATTCCTTTGTAGCTGA+TGG - tig0024002:35896-35915 None:intergenic 30.0%
!!! TGTTACTTTTTTTGCCAAAG+AGG + tig0024002:36175-36194 Msa1413060:CDS 30.0%
! TCCTATATTTTCTTCCTCTT+TGG - tig0024002:36192-36211 None:intergenic 30.0%
AAACCAATATACTCAAATGG+AGG + tig0024002:36271-36290 Msa1413060:CDS 30.0%
AAAACACTTGTTTATTACCG+TGG + tig0024002:36322-36341 Msa1413060:CDS 30.0%
! AGCATAGGAAATGTTTGTTT+TGG - tig0024002:36416-36435 None:intergenic 30.0%
ATCAACATCATTCTTAGCAT+AGG - tig0024002:36431-36450 None:intergenic 30.0%
AAACAATAAAAGATTGGTGC+TGG - tig0024002:36485-36504 None:intergenic 30.0%
! GTCCTAATGATTTTTGTCTA+TGG + tig0024002:36921-36940 Msa1413060:intron 30.0%
TGCCATAGACAAAAATCATT+AGG - tig0024002:36926-36945 None:intergenic 30.0%
TTAGCTAATTGTTTCATCTC+TGG - tig0024002:37011-37030 None:intergenic 30.0%
TAACACCATCATCAAATCTT+TGG + tig0024002:37249-37268 Msa1413060:CDS 30.0%
ATCAAATCTTTGGATTAAGC+AGG + tig0024002:37259-37278 Msa1413060:CDS 30.0%
GTAACAAGTTCTTCATCTGT+AGG - tig0024002:35302-35321 None:intergenic 35.0%
GAAGAAATCACTATCGAAAG+GGG + tig0024002:35536-35555 Msa1413060:intron 35.0%
! TAATCATCTTTCTGGAGAAG+TGG + tig0024002:35695-35714 Msa1413060:intron 35.0%
!!! GGTCATTTTTTTTTTACCGC+TGG + tig0024002:35716-35735 Msa1413060:intron 35.0%
GCCAAAGAGGAAGAAAATAT+AGG + tig0024002:36188-36207 Msa1413060:CDS 35.0%
TCTCCTCCATTTGAGTATAT+TGG - tig0024002:36277-36296 None:intergenic 35.0%
ATATACTCAAATGGAGGAGA+AGG + tig0024002:36277-36296 Msa1413060:CDS 35.0%
!! GAAAAGGTACCAAAACTGAT+TGG + tig0024002:36353-36372 Msa1413060:CDS 35.0%
! ATGCATCATCCAATCAGTTT+TGG - tig0024002:36365-36384 None:intergenic 35.0%
!! GTTTTGGCATCAATGTTTGA+TGG - tig0024002:36400-36419 None:intergenic 35.0%
!! TCATGTTGATTGTAATGGGT+TGG - tig0024002:36857-36876 None:intergenic 35.0%
! CGTTAATGTGATGATGTTCA+TGG - tig0024002:37127-37146 None:intergenic 35.0%
TGAACATCATCACATTAACG+AGG + tig0024002:37127-37146 Msa1413060:CDS 35.0%
CAAGCAATGATCAAAGGAAT+CGG + tig0024002:37171-37190 Msa1413060:CDS 35.0%
GTAACAAGTTCTTCATCTGT+AGG - tig0024002:35302-35321 None:intergenic 35.0%
GAAGAAATCACTATCGAAAG+GGG + tig0024002:35536-35555 Msa1413060:intron 35.0%
! TAATCATCTTTCTGGAGAAG+TGG + tig0024002:35695-35714 Msa1413060:intron 35.0%
!!! GGTCATTTTTTTTTTACCGC+TGG + tig0024002:35716-35735 Msa1413060:intron 35.0%
GCCAAAGAGGAAGAAAATAT+AGG + tig0024002:36188-36207 Msa1413060:CDS 35.0%
TCTCCTCCATTTGAGTATAT+TGG - tig0024002:36277-36296 None:intergenic 35.0%
ATATACTCAAATGGAGGAGA+AGG + tig0024002:36277-36296 Msa1413060:CDS 35.0%
!! GAAAAGGTACCAAAACTGAT+TGG + tig0024002:36353-36372 Msa1413060:CDS 35.0%
! ATGCATCATCCAATCAGTTT+TGG - tig0024002:36365-36384 None:intergenic 35.0%
!! GTTTTGGCATCAATGTTTGA+TGG - tig0024002:36400-36419 None:intergenic 35.0%
!! TCATGTTGATTGTAATGGGT+TGG - tig0024002:36857-36876 None:intergenic 35.0%
! CGTTAATGTGATGATGTTCA+TGG - tig0024002:37127-37146 None:intergenic 35.0%
TGAACATCATCACATTAACG+AGG + tig0024002:37127-37146 Msa1413060:CDS 35.0%
CAAGCAATGATCAAAGGAAT+CGG + tig0024002:37171-37190 Msa1413060:CDS 35.0%
CAAGTTCTTCATCTGTAGGA+TGG - tig0024002:35298-35317 None:intergenic 40.0%
CATATACTTGGAAGATCCCA+AGG - tig0024002:35404-35423 None:intergenic 40.0%
TATGCAGAAGCAAATGTAGC+TGG + tig0024002:36139-36158 Msa1413060:intron 40.0%
GTTAGACCAAATAGAGTCAC+TGG + tig0024002:36217-36236 Msa1413060:CDS 40.0%
GGAGAAGGAAATGATTGTGT+TGG + tig0024002:36292-36311 Msa1413060:CDS 40.0%
! GATTTTTGTCTATGGCATGC+AGG + tig0024002:36929-36948 Msa1413060:intron 40.0%
TCTATGGCATGCAGGAAATT+TGG + tig0024002:36937-36956 Msa1413060:intron 40.0%
! TTTGATAACTGGGATGAGCT+TGG + tig0024002:37302-37321 Msa1413060:CDS 40.0%
CAAGTTCTTCATCTGTAGGA+TGG - tig0024002:35298-35317 None:intergenic 40.0%
CATATACTTGGAAGATCCCA+AGG - tig0024002:35404-35423 None:intergenic 40.0%
TATGCAGAAGCAAATGTAGC+TGG + tig0024002:36139-36158 Msa1413060:intron 40.0%
GTTAGACCAAATAGAGTCAC+TGG + tig0024002:36217-36236 Msa1413060:CDS 40.0%
GGAGAAGGAAATGATTGTGT+TGG + tig0024002:36292-36311 Msa1413060:CDS 40.0%
! GATTTTTGTCTATGGCATGC+AGG + tig0024002:36929-36948 Msa1413060:intron 40.0%
TCTATGGCATGCAGGAAATT+TGG + tig0024002:36937-36956 Msa1413060:intron 40.0%
! TTTGATAACTGGGATGAGCT+TGG + tig0024002:37302-37321 Msa1413060:CDS 40.0%
! GATGATGATGTTCCACTTCC+TGG + tig0024002:35263-35282 Msa1413060:CDS 45.0%
TGGAAACGAAATCCAGGAAG+TGG - tig0024002:35278-35297 None:intergenic 45.0%
GTAGGATGGAAACGAAATCC+AGG - tig0024002:35284-35303 None:intergenic 45.0%
AATCATGATCACGTCTCCAG+CGG - tig0024002:35735-35754 None:intergenic 45.0%
TGATCAGCCATCAGCTACAA+AGG + tig0024002:35886-35905 Msa1413060:intron 45.0%
AAATGTAGCTGGAGCAGAGA+AGG + tig0024002:36150-36169 Msa1413060:CDS 45.0%
! TCTGGATTCTGGAAAGCAAC+TGG + tig0024002:36241-36260 Msa1413060:CDS 45.0%
! GTTTATTACCGTGGTAGTGC+TGG + tig0024002:36331-36350 Msa1413060:CDS 45.0%
! TACCTTTTCCAGCACTACCA+CGG - tig0024002:36342-36361 None:intergenic 45.0%
CACCAGAATGGGCAACAATA+TGG + tig0024002:37058-37077 Msa1413060:CDS 45.0%
CTCCATATTGTTGCCCATTC+TGG - tig0024002:37063-37082 None:intergenic 45.0%
!! AGATCAGTTGAGCTCTAGAG+TGG + tig0024002:37202-37221 Msa1413060:CDS 45.0%
ATGAGCTTGGATCAGTTGTG+AGG + tig0024002:37315-37334 Msa1413060:CDS 45.0%
! GATGATGATGTTCCACTTCC+TGG + tig0024002:35263-35282 Msa1413060:CDS 45.0%
TGGAAACGAAATCCAGGAAG+TGG - tig0024002:35278-35297 None:intergenic 45.0%
GTAGGATGGAAACGAAATCC+AGG - tig0024002:35284-35303 None:intergenic 45.0%
AATCATGATCACGTCTCCAG+CGG - tig0024002:35735-35754 None:intergenic 45.0%
TGATCAGCCATCAGCTACAA+AGG + tig0024002:35886-35905 Msa1413060:intron 45.0%
AAATGTAGCTGGAGCAGAGA+AGG + tig0024002:36150-36169 Msa1413060:CDS 45.0%
! TCTGGATTCTGGAAAGCAAC+TGG + tig0024002:36241-36260 Msa1413060:CDS 45.0%
! GTTTATTACCGTGGTAGTGC+TGG + tig0024002:36331-36350 Msa1413060:CDS 45.0%
! TACCTTTTCCAGCACTACCA+CGG - tig0024002:36342-36361 None:intergenic 45.0%
CACCAGAATGGGCAACAATA+TGG + tig0024002:37058-37077 Msa1413060:CDS 45.0%
CTCCATATTGTTGCCCATTC+TGG - tig0024002:37063-37082 None:intergenic 45.0%
!! AGATCAGTTGAGCTCTAGAG+TGG + tig0024002:37202-37221 Msa1413060:CDS 45.0%
ATGAGCTTGGATCAGTTGTG+AGG + tig0024002:37315-37334 Msa1413060:CDS 45.0%
!! AGAAAATAATAAAATAATTA+TGG - tig0024002:36635-36654 None:intergenic 5.0%
!! AGAAAATAATAAAATAATTA+TGG - tig0024002:36635-36654 None:intergenic 5.0%
CCAGAGCCAGTGACTCTATT+TGG - tig0024002:36226-36245 None:intergenic 50.0%
!! CCAAATAGAGTCACTGGCTC+TGG + tig0024002:36223-36242 Msa1413060:CDS 50.0%
! TACCGTGGTAGTGCTGGAAA+AGG + tig0024002:36337-36356 Msa1413060:CDS 50.0%
ACGTCAAGCCGTTCGTAACA+CGG + tig0024002:37034-37053 Msa1413060:CDS 50.0%
CCAGAGCCAGTGACTCTATT+TGG - tig0024002:36226-36245 None:intergenic 50.0%
!! CCAAATAGAGTCACTGGCTC+TGG + tig0024002:36223-36242 Msa1413060:CDS 50.0%
! TACCGTGGTAGTGCTGGAAA+AGG + tig0024002:36337-36356 Msa1413060:CDS 50.0%
ACGTCAAGCCGTTCGTAACA+CGG + tig0024002:37034-37053 Msa1413060:CDS 50.0%
!! GAGTCACTGGCTCTGGATTC+TGG + tig0024002:36230-36249 Msa1413060:CDS 55.0%
CGTCAAGCCGTTCGTAACAC+GGG + tig0024002:37035-37054 Msa1413060:CDS 55.0%
TCTGGTGCCCGTGTTACGAA+CGG - tig0024002:37045-37064 None:intergenic 55.0%
TCGTAACACGGGCACCAGAA+TGG + tig0024002:37046-37065 Msa1413060:CDS 55.0%
CGTAACACGGGCACCAGAAT+GGG + tig0024002:37047-37066 Msa1413060:CDS 55.0%
!! GAGTCACTGGCTCTGGATTC+TGG + tig0024002:36230-36249 Msa1413060:CDS 55.0%
CGTCAAGCCGTTCGTAACAC+GGG + tig0024002:37035-37054 Msa1413060:CDS 55.0%
TCTGGTGCCCGTGTTACGAA+CGG - tig0024002:37045-37064 None:intergenic 55.0%
TCGTAACACGGGCACCAGAA+TGG + tig0024002:37046-37065 Msa1413060:CDS 55.0%
CGTAACACGGGCACCAGAAT+GGG + tig0024002:37047-37066 Msa1413060:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0024002 gene 35212 37364 35212 ID=Msa1413060;Name=Msa1413060
tig0024002 mRNA 35212 37364 35212 ID=Msa1413060-mRNA-1;Parent=Msa1413060;Name=Msa1413060-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|312
tig0024002 exon 35212 35416 35212 ID=Msa1413060-mRNA-1:exon:20962;Parent=Msa1413060-mRNA-1
tig0024002 exon 36146 36465 36146 ID=Msa1413060-mRNA-1:exon:20963;Parent=Msa1413060-mRNA-1
tig0024002 exon 36951 37364 36951 ID=Msa1413060-mRNA-1:exon:20964;Parent=Msa1413060-mRNA-1
tig0024002 CDS 35212 35416 35212 ID=Msa1413060-mRNA-1:cds;Parent=Msa1413060-mRNA-1
tig0024002 CDS 36146 36465 36146 ID=Msa1413060-mRNA-1:cds;Parent=Msa1413060-mRNA-1
tig0024002 CDS 36951 37364 36951 ID=Msa1413060-mRNA-1:cds;Parent=Msa1413060-mRNA-1
Gene Sequence

>Msa1413060

ATGGGTATGAACGATGATTTCAACACGGATAATGAATATGTTGTAGATGGTGATGATGATGTTCCACTTCCTGGATTTCGTTTCCATCCTACAGATGAAGAACTTGTTACTTTTTATCTTAGAAGAAAACTTGACAAGAAACCTATTGCTATTGATCTCATCAAACAAATTGATATCTACAAATATGATCCTTGGGATCTTCCAAAAGCAAATGTAGCTGGAGCAGAGAAGGAATGTTACTTTTTTTGCCAAAGAGGAAGAAAATATAGGAACAGCGTTAGACCAAATAGAGTCACTGGCTCTGGATTCTGGAAAGCAACTGGAATAGATAAACCAATATACTCAAATGGAGGAGAAGGAAATGATTGTGTTGGACTCAAAAAAACACTTGTTTATTACCGTGGTAGTGCTGGAAAAGGTACCAAAACTGATTGGATGATGCATGAGTTTCGTCTTCCATCAAACATTGATGCCAAAACAAACATTTCCTATGCTAAGAATGATGTTGATTATGCTCATGAAGCTGAAATTTGGACATTGTGTAGAATTTTCAAAAGAAATGTATCACAAAGGAAACAAATACCAGAGATGAAACAATTAGCTAACAAACGTCAAGCCGTTCGTAACACGGGCACCAGAATGGGCAACAATATGGAGTTTAACACAAATCAACAAACATATATAAATTTCGGTGCAAGCCATGAACATCATCACATTAACGAGGACAAACCAGTCAATAATTATACAAGCAATGATCAAAGGAATCGGTTTCATGTAGATCAGTTGAGCTCTAGAGTGGCTCATCAACATCAACAAAATAATGTAACACCATCATCAAATCTTTGGATTAAGCAGGATGCTAATGAGTTGTTATCATTTGATAACTGGGATGAGCTTGGATCAGTTGTGAGGTTTGCTGTTGATTCACCTAGTTTGTAA
Protein sequence

>Msa1413060

MGMNDDFNTDNEYVVDGDDDVPLPGFRFHPTDEELVTFYLRRKLDKKPIAIDLIKQIDIYKYDPWDLPKANVAGAEKECYFFCQRGRKYRNSVRPNRVTGSGFWKATGIDKPIYSNGGEGNDCVGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNIDAKTNISYAKNDVDYAHEAEIWTLCRIFKRNVSQRKQIPEMKQLANKRQAVRNTGTRMGNNMEFNTNQQTYINFGASHEHHHINEDKPVNNYTSNDQRNRFHVDQLSSRVAHQHQQNNVTPSSNLWIKQDANELLSFDNWDELGSVVRFAVDSPSL*