AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0292560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0292560 MtrunA17_Chr2g0314301 81.832 677 119 1 44 716 876 1552 0.0 1136
Msa0292560 MtrunA17_Chr2g0313331 76.071 677 155 3 44 716 561 1234 0.0 1041
Msa0292560 MtrunA17_Chr2g0313481 70.852 669 191 1 52 716 889 1557 0.0 943
Msa0292560 MtrunA17_Chr2g0313481 24.260 507 322 17 203 689 807 1271 2.11e-15 80.9
Msa0292560 MtrunA17_Chr2g0313541 71.196 677 189 3 44 716 875 1549 0.0 941
Msa0292560 MtrunA17_Chr2g0313541 24.638 483 236 17 293 679 804 1254 3.82e-12 70.1
Msa0292560 MtrunA17_Chr2g0313591 69.094 673 191 2 44 712 879 1538 0.0 929
Msa0292560 MtrunA17_Chr2g0313351 68.584 678 182 6 51 716 886 1544 0.0 887
Msa0292560 MtrunA17_Chr2g0313351 23.363 565 300 17 165 686 782 1256 4.99e-15 79.7
Msa0292560 MtrunA17_Chr2g0313311 68.209 670 179 5 51 716 882 1521 0.0 877
Msa0292560 MtrunA17_Chr2g0313311 24.540 326 203 13 103 396 799 1113 1.14e-12 72.0
Msa0292560 MtrunA17_Chr2g0313421 68.148 675 181 5 46 716 7 651 0.0 872
Msa0292560 MtrunA17_Chr2g0313491 56.342 678 242 6 44 715 879 1508 0.0 689
Msa0292560 MtrunA17_Chr2g0313461 69.367 395 105 2 44 438 878 1256 3.62e-175 535
Msa0292560 MtrunA17_Chr2g0313471 71.863 263 73 1 454 716 1 262 3.03e-127 378
Msa0292560 MtrunA17_Chr1g0167981 35.320 671 384 16 53 704 880 1519 8.19e-104 349
Msa0292560 MtrunA17_Chr1g0167981 30.780 731 432 14 42 707 1326 2047 8.72e-81 281
Msa0292560 MtrunA17_Chr1g0167981 35.398 565 333 14 168 710 2535 3089 6.33e-80 279
Msa0292560 MtrunA17_Chr1g0167981 33.333 588 360 13 139 707 1994 2568 6.38e-77 270
Msa0292560 MtrunA17_Chr1g0167981 24.138 290 161 8 201 441 795 1074 3.08e-12 70.5
Msa0292560 MtrunA17_Chr6g0474571 35.135 666 391 14 53 704 883 1521 2.30e-98 333
Msa0292560 MtrunA17_Chr6g0474571 31.732 687 380 13 39 707 1429 2044 3.32e-84 292
Msa0292560 MtrunA17_Chr6g0474571 30.907 728 422 13 45 707 1853 2564 4.55e-83 288
Msa0292560 MtrunA17_Chr6g0474571 31.200 750 433 17 34 710 2354 3093 1.64e-80 281
Msa0292560 MtrunA17_Chr1g0174511 35.522 670 383 17 53 704 880 1518 5.70e-97 329
Msa0292560 MtrunA17_Chr1g0174511 30.982 326 209 4 177 492 1507 1826 1.22e-40 160
Msa0292560 MtrunA17_Chr1g0174511 22.172 663 374 24 123 673 1111 1743 5.95e-17 85.9
Msa0292560 MtrunA17_Chr1g0172141 34.230 669 396 17 53 704 882 1523 7.35e-97 328
Msa0292560 MtrunA17_Chr1g0163891 34.925 670 387 16 53 704 896 1534 2.89e-96 327
Msa0292560 MtrunA17_Chr1g0163891 30.759 751 446 13 21 706 2360 3101 2.64e-85 295
Msa0292560 MtrunA17_Chr1g0163891 30.984 752 442 14 21 706 1838 2578 6.09e-84 291
Msa0292560 MtrunA17_Chr1g0163891 34.774 532 330 6 188 706 1529 2056 6.28e-83 288
Msa0292560 MtrunA17_Chr1g0163891 23.492 630 365 24 106 676 2233 2804 1.84e-13 74.7
Msa0292560 MtrunA17_Chr1g0163931 34.933 667 390 16 53 704 883 1520 7.02e-96 326
Msa0292560 MtrunA17_Chr1g0163931 34.601 552 332 13 177 711 1509 2048 1.26e-79 278
Msa0292560 MtrunA17_Chr1g0170881 35.082 667 389 16 53 704 882 1519 2.34e-94 322
Msa0292560 MtrunA17_Chr1g0170881 35.846 544 328 9 177 706 1508 2044 1.65e-83 290
Msa0292560 MtrunA17_Chr1g0170881 27.119 295 164 11 164 418 1729 2012 2.68e-12 70.9
Msa0292560 MtrunA17_Chr1g0163791 34.529 669 391 15 53 704 880 1518 3.56e-94 321
Msa0292560 MtrunA17_Chr1g0163791 31.641 256 164 4 177 429 1507 1754 6.92e-34 140
Msa0292560 MtrunA17_Chr1g0163791 21.750 800 448 27 21 673 975 1743 6.31e-17 85.9
Msa0292560 MtrunA17_Chr1g0163761 34.633 667 392 16 53 704 886 1523 1.81e-93 319
Msa0292560 MtrunA17_Chr1g0163761 34.775 555 344 8 168 706 2016 2568 6.38e-85 294
Msa0292560 MtrunA17_Chr1g0163761 35.294 544 328 8 177 706 1512 2045 3.15e-82 286
Msa0292560 MtrunA17_Chr8g0359891 33.763 699 397 17 45 704 726 1397 3.86e-93 318
Msa0292560 MtrunA17_Chr8g0359891 31.283 748 450 13 21 711 2197 2937 3.68e-87 300
Msa0292560 MtrunA17_Chr8g0359891 33.910 578 347 11 138 704 3 556 5.45e-86 297
Msa0292560 MtrunA17_Chr8g0359891 33.216 566 327 10 154 706 1888 2415 2.08e-76 269
Msa0292560 MtrunA17_Chr8g0359891 34.879 539 329 8 188 710 1392 1924 4.87e-76 268
Msa0292560 MtrunA17_Chr8g0359891 25.627 757 410 20 51 673 369 1106 2.76e-43 169
Msa0292560 MtrunA17_Chr8g0359891 22.885 520 343 15 191 673 283 781 5.08e-16 82.8
Msa0292560 MtrunA17_Chr8g0359891 23.442 674 379 24 45 676 2063 2641 7.61e-12 69.3
Msa0292560 MtrunA17_Chr1g0172051 34.679 669 389 16 53 704 883 1520 8.89e-93 317
Msa0292560 MtrunA17_Chr1g0172051 31.836 757 439 18 21 711 2341 3086 8.70e-87 299
Msa0292560 MtrunA17_Chr1g0172051 34.495 545 331 8 177 706 2026 2559 8.79e-83 288
Msa0292560 MtrunA17_Chr1g0172051 34.398 532 325 8 188 704 1515 2037 1.16e-80 281
Msa0292560 MtrunA17_Chr1g0172051 23.482 626 362 24 110 676 2218 2785 1.21e-13 75.1
Msa0292560 MtrunA17_Chr1g0163991 35.284 581 339 12 138 704 3 560 1.24e-92 314
Msa0292560 MtrunA17_Chr1g0163991 35.025 591 346 12 125 704 697 1260 3.14e-91 310
Msa0292560 MtrunA17_Chr1g0172161 34.423 581 344 11 138 704 3 560 2.14e-92 298
Msa0292560 MtrunA17_Chr1g0164011 33.883 667 398 15 53 704 884 1522 1.05e-90 311
Msa0292560 MtrunA17_Chr1g0164011 33.929 560 351 9 168 710 1938 2495 9.94e-84 290
Msa0292560 MtrunA17_Chr1g0164011 27.945 433 249 9 51 429 1335 1758 1.08e-37 152
Msa0292560 MtrunA17_Chr1g0164011 39.894 188 110 2 519 706 1783 1967 1.96e-26 116
Msa0292560 MtrunA17_Chr1g0164011 21.329 572 348 14 164 673 1216 1747 6.82e-20 95.5
Msa0292560 MtrunA17_Chr1g0164011 25.120 625 357 24 111 676 1621 2193 6.42e-19 92.4
Msa0292560 MtrunA17_Chr1g0172231 31.935 739 431 15 38 711 675 1406 7.34e-90 307
Msa0292560 MtrunA17_Chr1g0172231 31.918 683 382 14 39 706 263 877 7.02e-83 287
Msa0292560 MtrunA17_Chr1g0172231 35.376 359 214 7 358 704 3 355 4.45e-48 183
Msa0292560 MtrunA17_Chr1g0172231 23.596 534 328 19 193 678 84 585 5.43e-17 85.9
Msa0292560 MtrunA17_Chr2g0323691 33.582 670 396 16 53 704 883 1521 2.32e-89 307
Msa0292560 MtrunA17_Chr2g0323691 35.084 533 329 6 188 707 1516 2044 4.18e-83 288
Msa0292560 MtrunA17_Chr2g0323691 30.832 733 434 13 38 707 1841 2563 1.06e-82 287
Msa0292560 MtrunA17_Chr2g0323691 31.006 716 424 14 58 710 2382 3090 4.69e-81 283
Msa0292560 MtrunA17_Chr8g0348201 32.990 679 409 18 47 706 59 710 1.51e-85 295
Msa0292560 MtrunA17_Chr8g0348201 29.248 612 388 18 112 706 636 1219 1.64e-53 200
Msa0292560 MtrunA17_Chr8g0348201 29.185 233 140 4 217 424 1243 1475 4.42e-24 108
Msa0292560 MtrunA17_Chr8g0348201 30.425 447 241 18 318 712 1082 1510 4.91e-24 108
Msa0292560 MtrunA17_Chr3g0081941 43.122 378 197 6 43 418 872 1233 2.95e-80 279
Msa0292560 MtrunA17_Chr1g0163801 34.004 447 251 7 256 688 4 420 8.86e-63 216
Msa0292560 MtrunA17_Chr1g0172101 36.061 330 194 6 386 704 5 328 3.93e-49 176
Msa0292560 MtrunA17_Chr8g0348251 28.276 580 388 14 138 708 211 771 1.49e-44 171
Msa0292560 MtrunA17_Chr8g0348251 38.261 230 125 9 487 706 40 262 2.07e-25 112
Msa0292560 MtrunA17_Chr2g0313511 68.519 108 30 1 340 443 1 108 1.68e-42 151
Msa0292560 MtrunA17_Chr1g0172081 34.764 233 146 3 201 430 4 233 1.18e-37 141
Msa0292560 MtrunA17_Chr1g0172071 34.831 267 166 4 451 715 5 265 3.82e-37 140
Msa0292560 MtrunA17_Chr1g0171091 35.540 287 182 3 430 713 25 311 4.16e-37 141
Msa0292560 MtrunA17_Chr1g0164101 35.656 244 138 6 214 446 1 236 4.45e-36 136
Msa0292560 MtrunA17_Chr1g0164121 34.035 285 183 4 431 712 26 308 7.74e-36 137
Msa0292560 MtrunA17_Chr1g0164121 28.897 263 134 10 193 418 24 270 1.53e-12 69.3
Msa0292560 MtrunA17_Chr4g0011661 31.250 400 247 12 311 705 2 378 6.34e-34 136
Msa0292560 MtrunA17_Chr1g0167331 36.493 211 130 3 220 428 1 209 7.18e-34 133
Msa0292560 MtrunA17_Chr1g0167331 40.179 112 66 1 523 634 245 355 1.12e-14 76.3
Msa0292560 MtrunA17_Chr4g0011631 30.326 399 251 11 311 704 2 378 3.65e-31 126
Msa0292560 MtrunA17_Chr2g0313411 63.441 93 34 0 454 546 1 93 2.94e-30 114
Msa0292560 MtrunA17_Chr5g0414911 26.325 547 336 14 203 707 800 1321 8.73e-29 124
Msa0292560 MtrunA17_Chr5g0414911 27.079 469 232 17 317 707 1181 1617 9.94e-21 98.2
Msa0292560 MtrunA17_Chr5g0414911 22.790 803 405 27 56 704 1127 1868 3.92e-20 96.3
Msa0292560 MtrunA17_Chr8g0359871 31.481 216 131 4 258 459 2 214 9.84e-29 115
Msa0292560 MtrunA17_Chr1g0163641 33.206 262 149 7 53 312 160 397 1.07e-27 116
Msa0292560 MtrunA17_Chr1g0174521 41.718 163 92 2 545 707 1 160 1.09e-27 112
Msa0292560 MtrunA17_Chr1g0174521 35.965 114 70 2 168 278 130 243 8.15e-13 68.9
Msa0292560 MtrunA17_Chr1g0163681 37.975 158 96 2 188 344 14 170 1.10e-24 101
Msa0292560 MtrunA17_Chr2g0314141 35.079 191 119 4 241 429 5 192 1.16e-24 102
Msa0292560 MtrunA17_Chr1g0172261 30.588 255 154 6 53 306 38 270 3.51e-24 103
Msa0292560 MtrunA17_Chr1g0146241 23.446 563 302 22 230 706 1344 1863 2.49e-21 100
Msa0292560 MtrunA17_Chr1g0146241 22.466 730 426 24 57 683 899 1591 8.07e-21 98.2
Msa0292560 MtrunA17_Chr1g0170961 40.179 112 67 0 318 429 3 114 4.07e-21 90.5
Msa0292560 MtrunA17_Chr7g0255111 23.127 761 441 24 56 706 1232 1958 5.10e-21 99.0
Msa0292560 MtrunA17_Chr7g0255111 34.722 144 83 3 572 715 1285 1417 8.28e-15 79.0
Msa0292560 MtrunA17_Chr7g0255111 23.174 712 447 26 55 704 1040 1713 6.31e-14 76.3
Msa0292560 MtrunA17_Chr2g0314151 40.288 139 78 3 567 704 1 135 1.22e-19 86.7
Msa0292560 MtrunA17_Chr7g0255401 23.200 625 389 19 113 709 692 1253 4.79e-18 89.4
Msa0292560 MtrunA17_Chr7g0255401 23.570 577 348 18 110 623 867 1413 5.41e-16 82.8
Msa0292560 MtrunA17_Chr1g0171081 44.565 92 50 1 615 706 3 93 1.82e-16 75.9
Msa0292560 MtrunA17_Chr1g0163651 29.121 182 110 3 363 535 9 180 1.35e-14 73.2
Msa0292560 MtrunA17_Chr1g0163691 28.492 179 116 3 375 541 13 191 2.48e-14 72.4
Msa0292560 MtrunA17_Chr3g0108811 28.967 397 205 21 56 404 1186 1553 2.92e-14 77.0
Msa0292560 MtrunA17_Chr2g0314131 34.074 135 88 1 523 657 21 154 2.30e-13 68.6
Msa0292560 MtrunA17_Chr7g0255391 30.488 164 104 6 552 706 192 354 5.60e-12 68.2
Msa0292560 MtrunA17_Chr7g0220991 25.946 185 123 5 518 688 299 483 1.77e-11 67.4
Msa0292560 MtrunA17_Chr3g0107211 24.831 443 267 12 201 618 775 1176 2.25e-11 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 123 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCGAAACATTGAAATAT+TGG 0.244562 2_3:+42097562 Msa0292560:CDS
AAACTCAAAGATGTTAGTTC+TGG 0.272131 2_3:-42096176 None:intergenic
ATTACCAATGTCTCCAAGTT+TGG 0.280840 2_3:-42095660 None:intergenic
AGAGGGGAAGAACATGATTA+AGG 0.295646 2_3:-42096043 None:intergenic
TCTCGATAATTTAGAGAATT+CGG 0.315477 2_3:-42096308 None:intergenic
TTATGCAATGGTCAACTTAA+TGG 0.318252 2_3:+42097281 Msa0292560:CDS
TTCAGTTTGCAGAATGAGTT+TGG 0.350590 2_3:-42095729 None:intergenic
CTTGTAAACCTGCAATATCT+TGG 0.350765 2_3:+42095440 Msa0292560:CDS
ACATGTACTTCTATGAGCTT+TGG 0.363207 2_3:-42097959 None:intergenic
TATCAATCTGGAATATCTTA+AGG 0.374794 2_3:+42097391 Msa0292560:CDS
AGCTGTCTAATATCAATTCT+AGG 0.375842 2_3:+42095303 Msa0292560:CDS
TGAAACATGAAGCTTTCATT+AGG 0.376843 2_3:-42095984 None:intergenic
GTCACCTCATCAATATAGAT+TGG 0.387523 2_3:-42095539 None:intergenic
TGTGAATATCCAGGACTCTA+AGG 0.392381 2_3:+42098131 Msa0292560:intron
ATTTCAATGTTTCGAAGAAC+CGG 0.393434 2_3:-42097557 None:intergenic
TTGAGAAGACTAGTACTTGC+TGG 0.398122 2_3:+42097488 Msa0292560:CDS
GCAAATGAGAACTCTCAGTT+TGG 0.403706 2_3:+42095923 Msa0292560:CDS
TACTAATCCCAAGATATTGC+AGG 0.406024 2_3:-42095448 None:intergenic
GAATTTAGAGCAGTTGGAGG+TGG 0.409938 2_3:+42097640 Msa0292560:CDS
CATAGTTGTTTCAAAATGTC+CGG 0.413880 2_3:-42097462 None:intergenic
GATTAGTAATTGCGAAAAGT+TGG 0.416003 2_3:+42095463 Msa0292560:CDS
CTGATTCAAGAATTGATCTA+AGG 0.417241 2_3:-42094412 None:intergenic
CTACCGTGGATCACATATCT+TGG 0.417654 2_3:+42096226 Msa0292560:CDS
TACAGATATTAAAACACATA+TGG 0.419018 2_3:+42095952 Msa0292560:CDS
ATTCTTCTATATAAAGCTCT+TGG 0.422107 2_3:-42096091 None:intergenic
GTTTGAGAATTTAGAGCAGT+TGG 0.430779 2_3:+42097634 Msa0292560:CDS
AGATCCTTATCAACTTTGAA+TGG 0.432292 2_3:-42095091 None:intergenic
AGAACAAGAGAACGCAACTT+AGG 0.432827 2_3:-42095031 None:intergenic
CGTGCCATTCAAAGTTGATA+AGG 0.435951 2_3:+42095087 Msa0292560:CDS
GGTGGGTGATTGTGCTGGAT+TGG 0.436562 2_3:+42097658 Msa0292560:CDS
GTAGGTTATATTTCCAAACT+TGG 0.436973 2_3:+42095647 Msa0292560:intron
TTGTAAACCTGCAATATCTT+GGG 0.437509 2_3:+42095441 Msa0292560:CDS
TATTGTAGCACAGGATGAAA+TGG 0.441162 2_3:+42096127 Msa0292560:CDS
TAATCATGTTCTTCCCCTCT+CGG 0.443111 2_3:+42096046 Msa0292560:CDS
AGAGAAGAGGAGAAGACCTT+AGG 0.444660 2_3:-42094452 None:intergenic
GAGGGGAAGAACATGATTAA+GGG 0.449995 2_3:-42096042 None:intergenic
TTGGAGGTGGGTGATTGTGC+TGG 0.450833 2_3:+42097653 Msa0292560:CDS
ATATCCACATATCTTAAAAC+AGG 0.451087 2_3:-42096254 None:intergenic
TAGATTGGTTTCTGAGATGA+AGG 0.455409 2_3:-42095524 None:intergenic
AATTTAGAGCAGTTGGAGGT+GGG 0.458130 2_3:+42097641 Msa0292560:CDS
TTGTCGTCAAAATTTGAAGA+AGG 0.462802 2_3:+42098164 Msa0292560:three_prime_UTR
TGGAACACTTGAAGTCAGTA+TGG 0.463437 2_3:+42095691 Msa0292560:CDS
AGAGAAATCTGAGGTGCAAC+CGG 0.464094 2_3:+42097538 Msa0292560:CDS
AACTCAAAGATGTTAGTTCT+GGG 0.465306 2_3:-42096175 None:intergenic
TTCTCAAACAACATTGAAGA+TGG 0.468362 2_3:-42097620 None:intergenic
TGTGGCCCTAATTAATGAAA+AGG 0.469571 2_3:+42095156 Msa0292560:CDS
GGCAGCGTTCTTCTTTCCTA+AGG 0.471534 2_3:+42094436 Msa0292560:CDS
CAGAATCAGCTCCTTTGCAT+TGG 0.472108 2_3:-42097237 None:intergenic
AAGAAAATTCGTAGCTAAAA+CGG 0.472281 2_3:+42098030 Msa0292560:CDS
ATGATGGAAACTTTCTCTTA+CGG 0.491751 2_3:+42097923 Msa0292560:CDS
TACCTTTGCAATTGAGAGAA+GGG 0.496131 2_3:-42096342 None:intergenic
ATTTCCAAACTTGGAGACAT+TGG 0.498303 2_3:+42095656 Msa0292560:CDS
GCTTAATAAATTACAAAACC+TGG 0.499141 2_3:+42095806 Msa0292560:CDS
AGTTCTGGGAATATAAGTAT+TGG 0.501397 2_3:-42096161 None:intergenic
GAACAAGAGAACGCAACTTA+GGG 0.503898 2_3:-42095030 None:intergenic
CATAGAGATTATTGTAGCAC+AGG 0.504156 2_3:+42096118 Msa0292560:CDS
TGTAATAGATTGTCCCATGA+TGG 0.504391 2_3:+42097907 Msa0292560:CDS
AATTTATTAAGCACATAAGC+TGG 0.509830 2_3:-42095795 None:intergenic
ACACAAGGTCTTAATAAAGA+TGG 0.512475 2_3:+42095876 Msa0292560:CDS
GCTCATAGAAGTACATGTAA+AGG 0.513370 2_3:+42097964 Msa0292560:CDS
TGAGAATTTAGAGCAGTTGG+AGG 0.515175 2_3:+42097637 Msa0292560:CDS
AGAACAAGAAAGAAGAGAAG+AGG 0.516419 2_3:-42094487 None:intergenic
TAGCTACAGTCACTATCTCC+AGG 0.517075 2_3:-42095824 None:intergenic
ATTCTTGCATTCAAAACTTG+AGG 0.517969 2_3:+42095354 Msa0292560:CDS
TTCAAATACAACTTCAAGTG+TGG 0.521795 2_3:-42095853 None:intergenic
AGGAACAAGATGAATGGCAT+TGG 0.522189 2_3:+42097984 Msa0292560:CDS
GAATGGATATTTGCATCAGA+TGG 0.523482 2_3:+42095485 Msa0292560:CDS
GAGAGAAAAGTCAAGAGAAG+AGG 0.528657 2_3:-42094465 None:intergenic
CAATAACTTTCAATATGCAA+AGG 0.532099 2_3:-42096010 None:intergenic
GCTTGAGCTTGTCACAATGA+AGG 0.535909 2_3:-42096277 None:intergenic
TCTCTCTACATATAAACTCA+AGG 0.535984 2_3:-42097520 None:intergenic
ACAAATAAGTTCTGCAGCTG+TGG 0.539167 2_3:-42097887 None:intergenic
GTAATTGCGAAAAGTTGGAA+TGG 0.543399 2_3:+42095468 Msa0292560:CDS
TAGACAGCTTCAATAGTTCA+AGG 0.544203 2_3:-42095289 None:intergenic
TGGTGATAGACAGACAAGGC+TGG 0.553992 2_3:+42095896 Msa0292560:CDS
TAAGAGAAAGTTTCCATCAT+GGG 0.555923 2_3:-42097920 None:intergenic
CAGCTTCAATAGTTCAAGGT+GGG 0.557019 2_3:-42095285 None:intergenic
GTACCTTTGCAATTGAGAGA+AGG 0.565945 2_3:-42096343 None:intergenic
AAGCGTGGTGAAAATTATGA+AGG 0.566887 2_3:+42095118 Msa0292560:CDS
ATGTAAAGGAACAAGATGAA+TGG 0.567465 2_3:+42097978 Msa0292560:CDS
CTTATCAACTTTGAATGGCA+CGG 0.569036 2_3:-42095086 None:intergenic
GTAAGAGAAAGTTTCCATCA+TGG 0.573483 2_3:-42097921 None:intergenic
TCAAATACAACTTCAAGTGT+GGG 0.574888 2_3:-42095852 None:intergenic
TATCAATTCTAGGAAACTGT+GGG 0.578265 2_3:+42095313 Msa0292560:CDS
ACCTTTGCAATTGAGAGAAG+GGG 0.579113 2_3:-42096341 None:intergenic
GAATGCAAGAATGACTAGGA+AGG 0.589399 2_3:-42095343 None:intergenic
AAGTTGACCATTGCATAACA+TGG 0.593293 2_3:-42097276 None:intergenic
TTCTCAGAGATATGCTTGAG+TGG 0.593768 2_3:+42097428 Msa0292560:CDS
TATTAAAACACATATGGAGT+GGG 0.598120 2_3:+42095958 Msa0292560:CDS
CAGTAAAATCACTTTGCCTA+CGG 0.599112 2_3:+42097318 Msa0292560:CDS
ATATCAATTCTAGGAAACTG+TGG 0.600203 2_3:+42095312 Msa0292560:CDS
ACTCAAGCATATCTCTGAGA+AGG 0.600887 2_3:-42097426 None:intergenic
GCCCCTTCTCTCAATTGCAA+AGG 0.605491 2_3:+42096340 Msa0292560:CDS
TTGAGTGGAAGCATTTGCGC+CGG 0.606077 2_3:+42097443 Msa0292560:CDS
ATAGGTTGTCACCAATGCAA+AGG 0.607718 2_3:+42097226 Msa0292560:intron
CAAGAATTGATCTAAGGTGA+GGG 0.609801 2_3:-42094406 None:intergenic
GGAGCTGATTCTGAACTGCA+AGG 0.609950 2_3:+42097247 Msa0292560:CDS
AGCTTCAATAGTTCAAGGTG+GGG 0.610088 2_3:-42095284 None:intergenic
TCAAGAATTGATCTAAGGTG+AGG 0.610428 2_3:-42094407 None:intergenic
TAGATCAATTCTTGAATCAG+CGG 0.611377 2_3:+42094415 Msa0292560:CDS
AGCTCTTTAGCCACCGAGAG+GGG 0.617733 2_3:-42096059 None:intergenic
CAACTTCAAAGCTTCTACCG+TGG 0.619919 2_3:+42096212 Msa0292560:CDS
CAAGATGAATGGCATTGGAA+TGG 0.630124 2_3:+42097989 Msa0292560:CDS
GATGTCACCATGTTATGCAA+TGG 0.630688 2_3:+42097269 Msa0292560:CDS
GACATTGGTAATCTCCCACA+TGG 0.640242 2_3:+42095671 Msa0292560:CDS
GAAACCAATCTATATTGATG+AGG 0.643536 2_3:+42095535 Msa0292560:CDS
GAGCTTTATATAGAAGAATG+TGG 0.643823 2_3:+42096095 Msa0292560:CDS
AAGCTCTTTAGCCACCGAGA+GGG 0.645662 2_3:-42096060 None:intergenic
ATTAGGGCCACAGGTATGCA+CGG 0.653872 2_3:-42095145 None:intergenic
ACAGCTTCAATAGTTCAAGG+TGG 0.660182 2_3:-42095286 None:intergenic
TCATGTTCTTCCCCTCTCGG+TGG 0.660402 2_3:+42096049 Msa0292560:CDS
AATCCAAGATATGTGATCCA+CGG 0.663868 2_3:-42096229 None:intergenic
ATTTGTCATGAAAACACCGT+AGG 0.664420 2_3:-42097334 None:intergenic
ATATTAAAACACATATGGAG+TGG 0.667670 2_3:+42095957 Msa0292560:CDS
AGGTACACCGTGCATACCTG+TGG 0.672227 2_3:+42095138 Msa0292560:CDS
TGACTTCAAGTGTTCCATGT+GGG 0.677707 2_3:-42095685 None:intergenic
AGTTTGACAATTGACAAATG+TGG 0.681948 2_3:+42095377 Msa0292560:CDS
GAAGTTGTATTTGAAACACA+AGG 0.688599 2_3:+42095861 Msa0292560:CDS
TACAAGTTCTCTAGCCACTG+AGG 0.698525 2_3:-42095423 None:intergenic
GAAGCTCTTTAGCCACCGAG+AGG 0.702232 2_3:-42096061 None:intergenic
CTGACTTCAAGTGTTCCATG+TGG 0.723402 2_3:-42095686 None:intergenic
TATATGTAGAGAGAAATCTG+AGG 0.780386 2_3:+42097529 Msa0292560:CDS
AAGATGGTGATAGACAGACA+AGG 0.782245 2_3:+42095892 Msa0292560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAATAATTAAATAAAA+AGG + chr2_3:42094976-42094995 Msa0292560:intron 0.0%
!!! TTATAGATATATTTGTTATT+TGG - chr2_3:42094782-42094801 None:intergenic 10.0%
!!! TTATAGATATATTTGTTATT+TGG - chr2_3:42094782-42094801 None:intergenic 10.0%
!! TTAGAATATATTTATATGAT+TGG - chr2_3:42094951-42094970 None:intergenic 10.0%
!! AAAATAATTAAATAAAAAGG+AGG + chr2_3:42094979-42094998 Msa0292560:intron 10.0%
!! AAATAATTAAATAAAAAGGA+GGG + chr2_3:42094980-42094999 Msa0292560:intron 10.0%
!!! TGAATTTTTTTTTTGTTAAT+AGG + chr2_3:42095253-42095272 Msa0292560:intron 10.0%
!!! TAGATATTTTTTGTATATTA+TGG + chr2_3:42096856-42096875 Msa0292560:intron 10.0%
!!! TTTTTATATAGAAAAATACT+CGG - chr2_3:42096950-42096969 None:intergenic 10.0%
!! TAGAAATAAATAAGATTATG+AGG - chr2_3:42094674-42094693 None:intergenic 15.0%
!! TGTATTATTATTATTAAGTG+GGG - chr2_3:42094714-42094733 None:intergenic 15.0%
!! GTGTATTATTATTATTAAGT+GGG - chr2_3:42094715-42094734 None:intergenic 15.0%
!!! AGCATAATATAATTGTTATT+TGG - chr2_3:42094874-42094893 None:intergenic 15.0%
!!! TATTTTCTTATGTTATATGT+TGG - chr2_3:42094905-42094924 None:intergenic 15.0%
!! TAAAAAGACAAATAGAAAAA+TGG - chr2_3:42095203-42095222 None:intergenic 15.0%
!! AATAGTTAATAGTTAAAGAT+TGG - chr2_3:42095564-42095583 None:intergenic 15.0%
!!! ATTTTATTTACTTTTTCAAC+GGG - chr2_3:42096481-42096500 None:intergenic 15.0%
!!! CATTTTATTTACTTTTTCAA+CGG - chr2_3:42096482-42096501 None:intergenic 15.0%
!! TAAAAGAAATAAATGAGAAA+TGG - chr2_3:42096775-42096794 None:intergenic 15.0%
!!! ATCTGATTAATTATTTTCAT+AGG + chr2_3:42097208-42097227 Msa0292560:intron 15.0%
!! TACAAAAACTTAGAAAATTA+TGG + chr2_3:42097714-42097733 Msa0292560:CDS 15.0%
!!! ATTTTCTTATAGTACTATTA+AGG - chr2_3:42098018-42098037 None:intergenic 15.0%
!! GTATTATTATTATTAAGTGG+GGG - chr2_3:42094713-42094732 None:intergenic 20.0%
!! GGTGTATTATTATTATTAAG+TGG - chr2_3:42094716-42094735 None:intergenic 20.0%
!!! GTTAGAGATATATTTGTTAT+TGG - chr2_3:42094737-42094756 None:intergenic 20.0%
!!! ATTTGGTGTAGAAATATATT+TGG - chr2_3:42094765-42094784 None:intergenic 20.0%
!!! TTTCACCTTTTCATTAATTA+GGG - chr2_3:42095164-42095183 None:intergenic 20.0%
!!! TTTTCACCTTTTCATTAATT+AGG - chr2_3:42095165-42095184 None:intergenic 20.0%
!! AAATTCATGAAGATCTTATT+TGG - chr2_3:42095240-42095259 None:intergenic 20.0%
!! TACAGATATTAAAACACATA+TGG + chr2_3:42095952-42095971 Msa0292560:CDS 20.0%
!! TAAATAAAATGTGAGTGTTA+AGG + chr2_3:42096491-42096510 Msa0292560:intron 20.0%
!! AAATAAAATGTGAGTGTTAA+GGG + chr2_3:42096492-42096511 Msa0292560:intron 20.0%
!! TTTGTGATGAAAAATTATTG+CGG + chr2_3:42096556-42096575 Msa0292560:intron 20.0%
!!! ATTCCAGATTGATAAATTTT+TGG - chr2_3:42097385-42097404 None:intergenic 20.0%
!!! TGAGATAACTTTTATGAAAT+TGG + chr2_3:42097796-42097815 Msa0292560:CDS 20.0%
!! CAATCATAATTCGAATATTA+CGG + chr2_3:42098073-42098092 Msa0292560:intron 20.0%
! TTATGTTAGAAAGAGTTTAC+CGG - chr2_3:42094535-42094554 None:intergenic 25.0%
! TAGAAAGAAGAATAAGTTGT+TGG - chr2_3:42094605-42094624 None:intergenic 25.0%
! AATTTATTAAGCACATAAGC+TGG - chr2_3:42095798-42095817 None:intergenic 25.0%
! GCTTAATAAATTACAAAACC+TGG + chr2_3:42095806-42095825 Msa0292560:CDS 25.0%
! ATATTAAAACACATATGGAG+TGG + chr2_3:42095957-42095976 Msa0292560:CDS 25.0%
! TATTAAAACACATATGGAGT+GGG + chr2_3:42095958-42095977 Msa0292560:CDS 25.0%
! CAATAACTTTCAATATGCAA+AGG - chr2_3:42096013-42096032 None:intergenic 25.0%
! ATTCTTCTATATAAAGCTCT+TGG - chr2_3:42096094-42096113 None:intergenic 25.0%
! ATATCCACATATCTTAAAAC+AGG - chr2_3:42096257-42096276 None:intergenic 25.0%
! TCTCGATAATTTAGAGAATT+CGG - chr2_3:42096311-42096330 None:intergenic 25.0%
!!! ACAAAAAAGACCGTTTTTAT+AGG + chr2_3:42096434-42096453 Msa0292560:intron 25.0%
! TTAAGGGATGTATTCAATTA+CGG + chr2_3:42096508-42096527 Msa0292560:intron 25.0%
! AAAATGTTTCGATACTACAA+AGG + chr2_3:42096889-42096908 Msa0292560:intron 25.0%
!!! TTTATTTTGAGGATCATTAC+TGG - chr2_3:42096987-42097006 None:intergenic 25.0%
!! TATCAATCTGGAATATCTTA+AGG + chr2_3:42097391-42097410 Msa0292560:CDS 25.0%
! TCTTCGAAACATTGAAATAT+TGG + chr2_3:42097562-42097581 Msa0292560:CDS 25.0%
! AAGAAAATTCGTAGCTAAAA+CGG + chr2_3:42098030-42098049 Msa0292560:CDS 25.0%
! CGTAATATTCGAATTATGAT+TGG - chr2_3:42098075-42098094 None:intergenic 25.0%
! TCGAAATAACAATATGAGAA+TGG - chr2_3:42098102-42098121 None:intergenic 25.0%
CTGATTCAAGAATTGATCTA+AGG - chr2_3:42094415-42094434 None:intergenic 30.0%
TAGATCAATTCTTGAATCAG+CGG + chr2_3:42094415-42094434 Msa0292560:CDS 30.0%
TGTTGGACCAAAATAGATTT+AGG - chr2_3:42094588-42094607 None:intergenic 30.0%
AGGTGTAAGAGAAATAAGAA+GGG - chr2_3:42094636-42094655 None:intergenic 30.0%
AGATCCTTATCAACTTTGAA+TGG - chr2_3:42095094-42095113 None:intergenic 30.0%
AGCTGTCTAATATCAATTCT+AGG + chr2_3:42095303-42095322 Msa0292560:CDS 30.0%
! ATATCAATTCTAGGAAACTG+TGG + chr2_3:42095312-42095331 Msa0292560:CDS 30.0%
! TATCAATTCTAGGAAACTGT+GGG + chr2_3:42095313-42095332 Msa0292560:CDS 30.0%
! TTTTGAATGCAAGAATGACT+AGG - chr2_3:42095350-42095369 None:intergenic 30.0%
ATTCTTGCATTCAAAACTTG+AGG + chr2_3:42095354-42095373 Msa0292560:CDS 30.0%
AGTTTGACAATTGACAAATG+TGG + chr2_3:42095377-42095396 Msa0292560:CDS 30.0%
TTGTAAACCTGCAATATCTT+GGG + chr2_3:42095441-42095460 Msa0292560:CDS 30.0%
GATTAGTAATTGCGAAAAGT+TGG + chr2_3:42095463-42095482 Msa0292560:CDS 30.0%
GAAACCAATCTATATTGATG+AGG + chr2_3:42095535-42095554 Msa0292560:CDS 30.0%
CTGATTATATTCCTGATTGT+AGG + chr2_3:42095629-42095648 Msa0292560:intron 30.0%
TGGAAATATAACCTACAATC+AGG - chr2_3:42095643-42095662 None:intergenic 30.0%
GTAGGTTATATTTCCAAACT+TGG + chr2_3:42095647-42095666 Msa0292560:intron 30.0%
TCAAATACAACTTCAAGTGT+GGG - chr2_3:42095855-42095874 None:intergenic 30.0%
TTCAAATACAACTTCAAGTG+TGG - chr2_3:42095856-42095875 None:intergenic 30.0%
! GAAGTTGTATTTGAAACACA+AGG + chr2_3:42095861-42095880 Msa0292560:CDS 30.0%
ACACAAGGTCTTAATAAAGA+TGG + chr2_3:42095876-42095895 Msa0292560:CDS 30.0%
TGAAACATGAAGCTTTCATT+AGG - chr2_3:42095987-42096006 None:intergenic 30.0%
! GAGCTTTATATAGAAGAATG+TGG + chr2_3:42096095-42096114 Msa0292560:CDS 30.0%
!! AGTTCTGGGAATATAAGTAT+TGG - chr2_3:42096164-42096183 None:intergenic 30.0%
! AACTCAAAGATGTTAGTTCT+GGG - chr2_3:42096178-42096197 None:intergenic 30.0%
AAACTCAAAGATGTTAGTTC+TGG - chr2_3:42096179-42096198 None:intergenic 30.0%
!!! TTGTCCTGTTTTAAGATATG+TGG + chr2_3:42096250-42096269 Msa0292560:CDS 30.0%
GTATTCAATTACGGTTTGAA+TGG + chr2_3:42096517-42096536 Msa0292560:intron 30.0%
!! CGGTTTGAATGGATTTTAAA+TGG + chr2_3:42096528-42096547 Msa0292560:intron 30.0%
! GTTGCTAAAATGGATTTCAT+TGG + chr2_3:42096585-42096604 Msa0292560:intron 30.0%
GAATCCATAAAAATCTCATG+TGG - chr2_3:42096640-42096659 None:intergenic 30.0%
CGTTTGTTTGATATAATGAC+AGG + chr2_3:42096914-42096933 Msa0292560:intron 30.0%
CATCTCAATTACATTTCACA+AGG - chr2_3:42097037-42097056 None:intergenic 30.0%
ATGTAATTGAGATGATCACA+TGG + chr2_3:42097043-42097062 Msa0292560:intron 30.0%
! CTTTTGTGCACATATAAACA+TGG - chr2_3:42097124-42097143 None:intergenic 30.0%
TTATGCAATGGTCAACTTAA+TGG + chr2_3:42097281-42097300 Msa0292560:CDS 30.0%
! AAATCCGAAAATTTTCCATC+TGG + chr2_3:42097353-42097372 Msa0292560:CDS 30.0%
!! CCAGATTGATAAATTTTTGG+AGG - chr2_3:42097382-42097401 None:intergenic 30.0%
CCTCCAAAAATTTATCAATC+TGG + chr2_3:42097379-42097398 Msa0292560:CDS 30.0%
! CATAGTTGTTTCAAAATGTC+CGG - chr2_3:42097465-42097484 None:intergenic 30.0%
TCTCTCTACATATAAACTCA+AGG - chr2_3:42097523-42097542 None:intergenic 30.0%
TATATGTAGAGAGAAATCTG+AGG + chr2_3:42097529-42097548 Msa0292560:CDS 30.0%
ATTTCAATGTTTCGAAGAAC+CGG - chr2_3:42097560-42097579 None:intergenic 30.0%
TTCTCAAACAACATTGAAGA+TGG - chr2_3:42097623-42097642 None:intergenic 30.0%
TTGCAAAAACTTCTTAGCAT+TGG - chr2_3:42097845-42097864 None:intergenic 30.0%
! AATGCTAAGAAGTTTTTGCA+AGG + chr2_3:42097844-42097863 Msa0292560:CDS 30.0%
! ATGCTAAGAAGTTTTTGCAA+GGG + chr2_3:42097845-42097864 Msa0292560:CDS 30.0%
TAAGAGAAAGTTTCCATCAT+GGG - chr2_3:42097923-42097942 None:intergenic 30.0%
! ATGATGGAAACTTTCTCTTA+CGG + chr2_3:42097923-42097942 Msa0292560:CDS 30.0%
ATGTAAAGGAACAAGATGAA+TGG + chr2_3:42097978-42097997 Msa0292560:CDS 30.0%
! TTTCTTGTTTGTGAATATCC+AGG + chr2_3:42098122-42098141 Msa0292560:intron 30.0%
TTGTCGTCAAAATTTGAAGA+AGG + chr2_3:42098164-42098183 Msa0292560:three_prime_UTR 30.0%
! CAAGAATTGATCTAAGGTGA+GGG - chr2_3:42094409-42094428 None:intergenic 35.0%
! TCAAGAATTGATCTAAGGTG+AGG - chr2_3:42094410-42094429 None:intergenic 35.0%
AGAACAAGAAAGAAGAGAAG+AGG - chr2_3:42094490-42094509 None:intergenic 35.0%
! TTCTCCTCTTTTCCAAAAAG+CGG + chr2_3:42094506-42094525 Msa0292560:CDS 35.0%
! CGCTCTTCCTAAATCTATTT+TGG + chr2_3:42094578-42094597 Msa0292560:intron 35.0%
GTGTAAGAGAAATAAGAAGG+GGG - chr2_3:42094634-42094653 None:intergenic 35.0%
GGTGTAAGAGAAATAAGAAG+GGG - chr2_3:42094635-42094654 None:intergenic 35.0%
GAGGTGTAAGAGAAATAAGA+AGG - chr2_3:42094637-42094656 None:intergenic 35.0%
!! TGAGGAATAGAGTAGTTTTG+AGG - chr2_3:42094656-42094675 None:intergenic 35.0%
GAACAAAAACTAACGAGACT+AGG - chr2_3:42095067-42095086 None:intergenic 35.0%
CTTATCAACTTTGAATGGCA+CGG - chr2_3:42095089-42095108 None:intergenic 35.0%
AAGCGTGGTGAAAATTATGA+AGG + chr2_3:42095118-42095137 Msa0292560:CDS 35.0%
! TTTTCATTAATTAGGGCCAC+AGG - chr2_3:42095157-42095176 None:intergenic 35.0%
TGTGGCCCTAATTAATGAAA+AGG + chr2_3:42095156-42095175 Msa0292560:CDS 35.0%
! ATCTTATTTGGCGATCTATG+TGG - chr2_3:42095228-42095247 None:intergenic 35.0%
TAGACAGCTTCAATAGTTCA+AGG - chr2_3:42095292-42095311 None:intergenic 35.0%
CTTGTAAACCTGCAATATCT+TGG + chr2_3:42095440-42095459 Msa0292560:CDS 35.0%
TACTAATCCCAAGATATTGC+AGG - chr2_3:42095451-42095470 None:intergenic 35.0%
GTAATTGCGAAAAGTTGGAA+TGG + chr2_3:42095468-42095487 Msa0292560:CDS 35.0%
GAATGGATATTTGCATCAGA+TGG + chr2_3:42095485-42095504 Msa0292560:CDS 35.0%
!! TAGATTGGTTTCTGAGATGA+AGG - chr2_3:42095527-42095546 None:intergenic 35.0%
GTCACCTCATCAATATAGAT+TGG - chr2_3:42095542-42095561 None:intergenic 35.0%
ATTTCCAAACTTGGAGACAT+TGG + chr2_3:42095656-42095675 Msa0292560:CDS 35.0%
ATTACCAATGTCTCCAAGTT+TGG - chr2_3:42095663-42095682 None:intergenic 35.0%
TTCAGTTTGCAGAATGAGTT+TGG - chr2_3:42095732-42095751 None:intergenic 35.0%
CATAGAGATTATTGTAGCAC+AGG + chr2_3:42096118-42096137 Msa0292560:CDS 35.0%
TATTGTAGCACAGGATGAAA+TGG + chr2_3:42096127-42096146 Msa0292560:CDS 35.0%
AATCCAAGATATGTGATCCA+CGG - chr2_3:42096232-42096251 None:intergenic 35.0%
TACCTTTGCAATTGAGAGAA+GGG - chr2_3:42096345-42096364 None:intergenic 35.0%
GCGGTATTTAGTTGCTAAAA+TGG + chr2_3:42096575-42096594 Msa0292560:intron 35.0%
CCATAAAAATCTCATGTGGT+AGG - chr2_3:42096636-42096655 None:intergenic 35.0%
! CCTACCACATGAGATTTTTA+TGG + chr2_3:42096633-42096652 Msa0292560:intron 35.0%
TAAATGAGAAATGGCAGAGA+TGG - chr2_3:42096766-42096785 None:intergenic 35.0%
TATAAACATGGAACGAAACG+AGG - chr2_3:42097112-42097131 None:intergenic 35.0%
AAGTTGACCATTGCATAACA+TGG - chr2_3:42097279-42097298 None:intergenic 35.0%
CAGTAAAATCACTTTGCCTA+CGG + chr2_3:42097318-42097337 Msa0292560:CDS 35.0%
ATTTGTCATGAAAACACCGT+AGG - chr2_3:42097337-42097356 None:intergenic 35.0%
! GAAGCCAGATGGAAAATTTT+CGG - chr2_3:42097360-42097379 None:intergenic 35.0%
! GTTTGAGAATTTAGAGCAGT+TGG + chr2_3:42097634-42097653 Msa0292560:CDS 35.0%
TGTAATAGATTGTCCCATGA+TGG + chr2_3:42097907-42097926 Msa0292560:CDS 35.0%
GTAAGAGAAAGTTTCCATCA+TGG - chr2_3:42097924-42097943 None:intergenic 35.0%
ACATGTACTTCTATGAGCTT+TGG - chr2_3:42097962-42097981 None:intergenic 35.0%
! GCTCATAGAAGTACATGTAA+AGG + chr2_3:42097964-42097983 Msa0292560:CDS 35.0%
ATTAATCATCCTTAGAGTCC+TGG - chr2_3:42098143-42098162 None:intergenic 35.0%
GAGAGAAAAGTCAAGAGAAG+AGG - chr2_3:42094468-42094487 None:intergenic 40.0%
!!! GAAACCGCTTTTTGGAAAAG+AGG - chr2_3:42094513-42094532 None:intergenic 40.0%
! CTTTTCCAAAAAGCGGTTTC+CGG + chr2_3:42094513-42094532 Msa0292560:intron 40.0%
GAACAAGAGAACGCAACTTA+GGG - chr2_3:42095033-42095052 None:intergenic 40.0%
AGAACAAGAGAACGCAACTT+AGG - chr2_3:42095034-42095053 None:intergenic 40.0%
!! CGTGCCATTCAAAGTTGATA+AGG + chr2_3:42095087-42095106 Msa0292560:CDS 40.0%
GATAAGGATCTCAAAAAGCG+TGG + chr2_3:42095103-42095122 Msa0292560:CDS 40.0%
AGCTTCAATAGTTCAAGGTG+GGG - chr2_3:42095287-42095306 None:intergenic 40.0%
CAGCTTCAATAGTTCAAGGT+GGG - chr2_3:42095288-42095307 None:intergenic 40.0%
ACAGCTTCAATAGTTCAAGG+TGG - chr2_3:42095289-42095308 None:intergenic 40.0%
GAATGCAAGAATGACTAGGA+AGG - chr2_3:42095346-42095365 None:intergenic 40.0%
! TTACACATTTTCGTCCTCAG+TGG + chr2_3:42095409-42095428 Msa0292560:CDS 40.0%
TGACTTCAAGTGTTCCATGT+GGG - chr2_3:42095688-42095707 None:intergenic 40.0%
TGGAACACTTGAAGTCAGTA+TGG + chr2_3:42095691-42095710 Msa0292560:CDS 40.0%
AAGATGGTGATAGACAGACA+AGG + chr2_3:42095892-42095911 Msa0292560:CDS 40.0%
GCAAATGAGAACTCTCAGTT+TGG + chr2_3:42095923-42095942 Msa0292560:CDS 40.0%
GAGGGGAAGAACATGATTAA+GGG - chr2_3:42096045-42096064 None:intergenic 40.0%
AGAGGGGAAGAACATGATTA+AGG - chr2_3:42096046-42096065 None:intergenic 40.0%
TAATCATGTTCTTCCCCTCT+CGG + chr2_3:42096046-42096065 Msa0292560:CDS 40.0%
ACCTTTGCAATTGAGAGAAG+GGG - chr2_3:42096344-42096363 None:intergenic 40.0%
GTACCTTTGCAATTGAGAGA+AGG - chr2_3:42096346-42096365 None:intergenic 40.0%
AGAAAGTAGTCTCCCATTTG+TGG - chr2_3:42096390-42096409 None:intergenic 40.0%
CCGCAAGACACCTATAAAAA+CGG - chr2_3:42096447-42096466 None:intergenic 40.0%
!! CCGTTTTTATAGGTGTCTTG+CGG + chr2_3:42096444-42096463 Msa0292560:intron 40.0%
CATTTCACAAGGATGCTTTG+AGG - chr2_3:42097026-42097045 None:intergenic 40.0%
ATTGAGATGATCACATGGAC+TGG + chr2_3:42097048-42097067 Msa0292560:intron 40.0%
ATAGGTTGTCACCAATGCAA+AGG + chr2_3:42097226-42097245 Msa0292560:intron 40.0%
GATGTCACCATGTTATGCAA+TGG + chr2_3:42097269-42097288 Msa0292560:CDS 40.0%
!! AATTTTTGGAGGAAGCCAGA+TGG - chr2_3:42097371-42097390 None:intergenic 40.0%
! ACTCAAGCATATCTCTGAGA+AGG - chr2_3:42097429-42097448 None:intergenic 40.0%
TTCTCAGAGATATGCTTGAG+TGG + chr2_3:42097428-42097447 Msa0292560:CDS 40.0%
TTGAGAAGACTAGTACTTGC+TGG + chr2_3:42097488-42097507 Msa0292560:CDS 40.0%
! TGAGAATTTAGAGCAGTTGG+AGG + chr2_3:42097637-42097656 Msa0292560:CDS 40.0%
! AATTTAGAGCAGTTGGAGGT+GGG + chr2_3:42097641-42097660 Msa0292560:CDS 40.0%
! AGTTTTTGCAAGGGAAGACA+TGG + chr2_3:42097854-42097873 Msa0292560:CDS 40.0%
ACAAATAAGTTCTGCAGCTG+TGG - chr2_3:42097890-42097909 None:intergenic 40.0%
AGGAACAAGATGAATGGCAT+TGG + chr2_3:42097984-42098003 Msa0292560:CDS 40.0%
! CAAGATGAATGGCATTGGAA+TGG + chr2_3:42097989-42098008 Msa0292560:CDS 40.0%
TGTGAATATCCAGGACTCTA+AGG + chr2_3:42098131-42098150 Msa0292560:intron 40.0%
AGAGAAGAGGAGAAGACCTT+AGG - chr2_3:42094455-42094474 None:intergenic 45.0%
!! GTTTACCGGAAACCGCTTTT+TGG - chr2_3:42094521-42094540 None:intergenic 45.0%
TACAAGTTCTCTAGCCACTG+AGG - chr2_3:42095426-42095445 None:intergenic 45.0%
! GACATTGGTAATCTCCCACA+TGG + chr2_3:42095671-42095690 Msa0292560:CDS 45.0%
CTGACTTCAAGTGTTCCATG+TGG - chr2_3:42095689-42095708 None:intergenic 45.0%
TAGCTACAGTCACTATCTCC+AGG - chr2_3:42095827-42095846 None:intergenic 45.0%
CAACTTCAAAGCTTCTACCG+TGG + chr2_3:42096212-42096231 Msa0292560:CDS 45.0%
CTACCGTGGATCACATATCT+TGG + chr2_3:42096226-42096245 Msa0292560:CDS 45.0%
GCTTGAGCTTGTCACAATGA+AGG - chr2_3:42096280-42096299 None:intergenic 45.0%
TCTCAATGCTCTGCCACAAA+TGG + chr2_3:42096374-42096393 Msa0292560:intron 45.0%
CTCAATGCTCTGCCACAAAT+GGG + chr2_3:42096375-42096394 Msa0292560:intron 45.0%
TGAGAAATGGCAGAGATGGA+GGG - chr2_3:42096762-42096781 None:intergenic 45.0%
ATGAGAAATGGCAGAGATGG+AGG - chr2_3:42096763-42096782 None:intergenic 45.0%
!! TTCACAAGGATGCTTTGAGG+AGG - chr2_3:42097023-42097042 None:intergenic 45.0%
AACATGGAACGAAACGAGGA+CGG - chr2_3:42097108-42097127 None:intergenic 45.0%
CAGAATCAGCTCCTTTGCAT+TGG - chr2_3:42097240-42097259 None:intergenic 45.0%
! AGAGAAATCTGAGGTGCAAC+CGG + chr2_3:42097538-42097557 Msa0292560:CDS 45.0%
! GAATTTAGAGCAGTTGGAGG+TGG + chr2_3:42097640-42097659 Msa0292560:CDS 45.0%
!!! AATAATTAATTTTTATTTTG+AGG - chr2_3:42096998-42097017 None:intergenic 5.0%
GGCAGCGTTCTTCTTTCCTA+AGG + chr2_3:42094436-42094455 Msa0292560:CDS 50.0%
ATTAGGGCCACAGGTATGCA+CGG - chr2_3:42095148-42095167 None:intergenic 50.0%
TGGTGATAGACAGACAAGGC+TGG + chr2_3:42095896-42095915 Msa0292560:CDS 50.0%
AAGCTCTTTAGCCACCGAGA+GGG - chr2_3:42096063-42096082 None:intergenic 50.0%
GCCCCTTCTCTCAATTGCAA+AGG + chr2_3:42096340-42096359 Msa0292560:CDS 50.0%
AAATGGCAGAGATGGAGGGA+GGG - chr2_3:42096758-42096777 None:intergenic 50.0%
! GGAGCTGATTCTGAACTGCA+AGG + chr2_3:42097247-42097266 Msa0292560:CDS 50.0%
!! TTGAGTGGAAGCATTTGCGC+CGG + chr2_3:42097443-42097462 Msa0292560:CDS 50.0%
AGGTACACCGTGCATACCTG+TGG + chr2_3:42095138-42095157 Msa0292560:CDS 55.0%
TCATGTTCTTCCCCTCTCGG+TGG + chr2_3:42096049-42096068 Msa0292560:CDS 55.0%
AGCTCTTTAGCCACCGAGAG+GGG - chr2_3:42096062-42096081 None:intergenic 55.0%
GAAGCTCTTTAGCCACCGAG+AGG - chr2_3:42096064-42096083 None:intergenic 55.0%
AATGGCAGAGATGGAGGGAG+GGG - chr2_3:42096757-42096776 None:intergenic 55.0%
GAAATGGCAGAGATGGAGGG+AGG - chr2_3:42096759-42096778 None:intergenic 55.0%
TTGGAGGTGGGTGATTGTGC+TGG + chr2_3:42097653-42097672 Msa0292560:CDS 55.0%
GGTGGGTGATTGTGCTGGAT+TGG + chr2_3:42097658-42097677 Msa0292560:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 42094390 42098200 42094390 ID=Msa0292560;Name=Msa0292560
chr2_3 mRNA 42094390 42098200 42094390 ID=Msa0292560-mRNA-1;Parent=Msa0292560;Name=Msa0292560-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0.8|0.5|0.83|1|1|6|39|716
chr2_3 exon 42094390 42094527 42094390 ID=Msa0292560-mRNA-1:exon:13448;Parent=Msa0292560-mRNA-1
chr2_3 exon 42094998 42095177 42094998 ID=Msa0292560-mRNA-1:exon:13449;Parent=Msa0292560-mRNA-1
chr2_3 exon 42095275 42095556 42095275 ID=Msa0292560-mRNA-1:exon:13450;Parent=Msa0292560-mRNA-1
chr2_3 exon 42095651 42096361 42095651 ID=Msa0292560-mRNA-1:exon:13451;Parent=Msa0292560-mRNA-1
chr2_3 exon 42097230 42098051 42097230 ID=Msa0292560-mRNA-1:exon:13452;Parent=Msa0292560-mRNA-1
chr2_3 exon 42098144 42098200 42098144 ID=Msa0292560-mRNA-1:exon:13453;Parent=Msa0292560-mRNA-1
chr2_3 CDS 42094390 42094527 42094390 ID=Msa0292560-mRNA-1:cds;Parent=Msa0292560-mRNA-1
chr2_3 CDS 42094998 42095177 42094998 ID=Msa0292560-mRNA-1:cds;Parent=Msa0292560-mRNA-1
chr2_3 CDS 42095275 42095556 42095275 ID=Msa0292560-mRNA-1:cds;Parent=Msa0292560-mRNA-1
chr2_3 CDS 42095651 42096361 42095651 ID=Msa0292560-mRNA-1:cds;Parent=Msa0292560-mRNA-1
chr2_3 CDS 42097230 42098051 42097230 ID=Msa0292560-mRNA-1:cds;Parent=Msa0292560-mRNA-1
chr2_3 CDS 42098144 42098161 42098144 ID=Msa0292560-mRNA-1:cds;Parent=Msa0292560-mRNA-1
chr2_3 three_prime_UTR 42098162 42098200 42098162 ID=Msa0292560-mRNA-1:three_prime_utr;Parent=Msa0292560-mRNA-1
Gene Sequence

>Msa0292560

ATGCAAGATAGTCTCACCCTCACCTTAGATCAATTCTTGAATCAGCGGCAGCGTTCTTCTTTCCTAAGGTCTTCTCCTCTTCTCTTGACTTTTCTCTCCTCTTCTCTTCTTTCTTGTTCTCCTCTTTTCCAAAAAGCGGAGGGCGTTACAGAAATCGACAAGATCACGTTCCCTAAGTTGCGTTCTCTTGTTCTTGAGCATTTGCCTAGTCTCGTTAGTTTTTGTTCCGTGCCATTCAAAGTTGATAAGGATCTCAAAAAGCGTGGTGAAAATTATGAAGGTACACCGTGCATACCTGTGGCCCTAATTAATGAAAAGGTTGAGATGCCCCACCTTGAACTATTGAAGCTGTCTAATATCAATTCTAGGAAACTGTGGGATGACAACCTTCCTAGTCATTCTTGCATTCAAAACTTGAGGAGTTTGACAATTGACAAATGTGGTAGCATAGCTTACACATTTTCGTCCTCAGTGGCTAGAGAACTTGTAAACCTGCAATATCTTGGGATTAGTAATTGCGAAAAGTTGGAATGGATATTTGCATCAGATGGAAAGTTTGACAATCTTCCTTCATCTCAGAAACCAATCTATATTGATGAGGTTATATTTCCAAACTTGGAGACATTGGTAATCTCCCACATGGAACACTTGAAGTCAGTATGGCACAGTCAACTAGCTCCAAACTCATTCTGCAAACTGAAGCAGTTGAAAATTGAATTCTGCAATGAACTTTCAATTTTAGTTCCAGCTTATGTGCTTAATAAATTACAAAACCTGGAGATAGTGACTGTAGCTAATTGTCCCACACTTGAAGTTGTATTTGAAACACAAGGTCTTAATAAAGATGGTGATAGACAGACAAGGCTGGAAATGCAAATGAGAACTCTCAGTTTGGAACATTTACAGATATTAAAACACATATGGAGTGGGAATCCTAATGAAAGCTTCATGTTTCAAAACCTTTGCATATTGAAAGTTATTGAATGCAAAGCCCTTAATCATGTTCTTCCCCTCTCGGTGGCTAAAGAGCTTCAGCATCTCCAAGAGCTTTATATAGAAGAATGTGGCATAGAGATTATTGTAGCACAGGATGAAATGGCTGACACAGTTCCAATACTTATATTCCCAGAACTAACATCTTTGAGTTTTCAAGATTTGACACAACTTCAAAGCTTCTACCGTGGATCACATATCTTGGATTGTCCTGTTTTAAGATATGTGGATATCCTTCATTGTGACAAGCTCAAGCTATTCATGCCGAATTCTCTAAATTATCGAGACAATACACTGCCCCTTCTCTCAATTGCAAAGGTTGTCACCAATGCAAAGGAGCTGATTCTGAACTGCAAGGATGTCACCATGTTATGCAATGGTCAACTTAATGGTGAGCTGATCTACACAGTAAAATCACTTTGCCTACGGTGTTTTCATGACAAATCCGAAAATTTTCCATCTGGCTTCCTCCAAAAATTTATCAATCTGGAATATCTTAAGGTGTCATGCAGTTCCTTCTCAGAGATATGCTTGAGTGGAAGCATTTGCGCCGGACATTTTGAAACAACTATGAAATTGAGAAGACTAGTACTTGCTGGATTAAAAAACCTTGAGTTTATATGTAGAGAGAAATCTGAGGTGCAACCGGTTCTTCGAAACATTGAAATATTGGAAGTATATATATGCTCTAGACTAAAGAATATATTTCCATCTTCAATGTTGTTTGAGAATTTAGAGCAGTTGGAGGTGGGTGATTGTGCTGGATTGGAAAATATTATGAAATCGTCAACAGCTACAAGTTTACAAAAACTTAGAAAATTATGGATATATAATTGTGAAAAGATAGAAGAAATAGTTGCAAGTGATAACGAAAATGATGCTTTTGAGATAACTTTTATGAAATTGGAGCATCTGCAGTTGAGTAACTTACCAATGCTAAGAAGTTTTTGCAAGGGAAGACATGGCTTCAAATTTCCACAGCTGCAGAACTTATTTGTAATAGATTGTCCCATGATGGAAACTTTCTCTTACGGAGTGTTGAACGCACCAAAGCTCATAGAAGTACATGTAAAGGAACAAGATGAATGGCATTGGAATGGTGACCTTAATAGTACTATAAGAAAATTCGTAGCTAAAACGGACTCTAAGGATGATTAA
Protein sequence

>Msa0292560

MQDSLTLTLDQFLNQRQRSSFLRSSPLLLTFLSSSLLSCSPLFQKAEGVTEIDKITFPKLRSLVLEHLPSLVSFCSVPFKVDKDLKKRGENYEGTPCIPVALINEKVEMPHLELLKLSNINSRKLWDDNLPSHSCIQNLRSLTIDKCGSIAYTFSSSVARELVNLQYLGISNCEKLEWIFASDGKFDNLPSSQKPIYIDEVIFPNLETLVISHMEHLKSVWHSQLAPNSFCKLKQLKIEFCNELSILVPAYVLNKLQNLEIVTVANCPTLEVVFETQGLNKDGDRQTRLEMQMRTLSLEHLQILKHIWSGNPNESFMFQNLCILKVIECKALNHVLPLSVAKELQHLQELYIEECGIEIIVAQDEMADTVPILIFPELTSLSFQDLTQLQSFYRGSHILDCPVLRYVDILHCDKLKLFMPNSLNYRDNTLPLLSIAKVVTNAKELILNCKDVTMLCNGQLNGELIYTVKSLCLRCFHDKSENFPSGFLQKFINLEYLKVSCSSFSEICLSGSICAGHFETTMKLRRLVLAGLKNLEFICREKSEVQPVLRNIEILEVYICSRLKNIFPSSMLFENLEQLEVGDCAGLENIMKSSTATSLQKLRKLWIYNCEKIEEIVASDNENDAFEITFMKLEHLQLSNLPMLRSFCKGRHGFKFPQLQNLFVIDCPMMETFSYGVLNAPKLIEVHVKEQDEWHWNGDLNSTIRKFVAKTDSKDD*