Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294920 | XP_003596322.1 | 78.000 | 450 | 8 | 4 | 3 | 361 | 1 | 450 | 0.0 | 648 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294920 | sp|F4KGE8|GIL1_ARATH | 34.932 | 146 | 73 | 4 | 223 | 353 | 402 | 540 | 1.17e-15 | 81.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294920 | G7ITF5 | 78.000 | 450 | 8 | 4 | 3 | 361 | 1 | 450 | 0.0 | 648 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0294920 | Msa0519760 | 0.829783 | 4.242629e-55 | -8.615850e-47 |
| Msa0294920 | Msa0519810 | 0.811040 | 8.539046e-51 | -8.615850e-47 |
| Msa0294920 | Msa0519840 | 0.828736 | 7.617611e-55 | -8.615850e-47 |
| Msa0294920 | Msa0652770 | 0.811105 | 8.267033e-51 | -8.615850e-47 |
| Msa0294920 | Msa0706760 | 0.825843 | 3.757782e-54 | -8.615850e-47 |
| Msa0294920 | Msa0945190 | 0.805800 | 1.120686e-49 | -8.615850e-47 |
| Msa0294920 | Msa1085330 | 0.823486 | 1.350026e-53 | -8.615850e-47 |
| Msa0294920 | Msa1412000 | 0.809839 | 1.551946e-50 | -8.615850e-47 |
| Msa0294920 | Msa1427110 | 0.838615 | 2.589251e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294920 | MtrunA17_Chr2g0315531 | 77.852 | 447 | 8 | 4 | 6 | 361 | 1 | 447 | 0.0 | 642 |
| Msa0294920 | MtrunA17_Chr8g0359791 | 51.923 | 364 | 88 | 9 | 76 | 361 | 51 | 405 | 2.48e-109 | 326 |
| Msa0294920 | MtrunA17_Chr8g0379551 | 36.943 | 471 | 171 | 12 | 2 | 361 | 13 | 468 | 4.30e-77 | 245 |
| Msa0294920 | MtrunA17_Chr4g0011611 | 33.516 | 364 | 158 | 6 | 76 | 361 | 52 | 409 | 2.05e-58 | 194 |
| Msa0294920 | MtrunA17_Chr5g0432511 | 30.973 | 339 | 162 | 11 | 76 | 354 | 36 | 362 | 2.86e-35 | 132 |
| Msa0294920 | MtrunA17_Chr7g0230481 | 24.933 | 373 | 187 | 10 | 73 | 361 | 156 | 519 | 3.13e-18 | 85.9 |
| Msa0294920 | MtrunA17_Chr3g0103691 | 34.307 | 137 | 71 | 3 | 230 | 354 | 337 | 466 | 1.51e-16 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294920 | AT1G53380.2 | 41.501 | 453 | 165 | 10 | 3 | 361 | 1 | 447 | 3.10e-107 | 322 |
| Msa0294920 | AT1G53380.4 | 41.501 | 453 | 165 | 10 | 3 | 361 | 1 | 447 | 3.10e-107 | 322 |
| Msa0294920 | AT1G53380.1 | 41.501 | 453 | 165 | 10 | 3 | 361 | 1 | 447 | 3.10e-107 | 322 |
| Msa0294920 | AT1G53380.3 | 41.501 | 453 | 165 | 10 | 3 | 361 | 1 | 447 | 3.10e-107 | 322 |
| Msa0294920 | AT1G53380.5 | 41.501 | 453 | 165 | 10 | 3 | 361 | 1 | 447 | 3.10e-107 | 322 |
| Msa0294920 | AT3G14870.4 | 40.393 | 458 | 174 | 8 | 3 | 361 | 1 | 458 | 5.95e-104 | 314 |
| Msa0294920 | AT3G14870.5 | 40.393 | 458 | 174 | 8 | 3 | 361 | 1 | 458 | 5.95e-104 | 314 |
| Msa0294920 | AT3G14870.2 | 40.393 | 458 | 174 | 8 | 3 | 361 | 1 | 458 | 5.95e-104 | 314 |
| Msa0294920 | AT3G14870.1 | 40.305 | 459 | 175 | 8 | 2 | 361 | 4 | 462 | 6.14e-104 | 314 |
| Msa0294920 | AT3G14870.3 | 40.393 | 458 | 174 | 8 | 3 | 361 | 2 | 459 | 6.83e-104 | 314 |
| Msa0294920 | AT1G29300.1 | 39.548 | 354 | 139 | 6 | 76 | 361 | 102 | 448 | 1.93e-73 | 235 |
| Msa0294920 | AT2G45260.1 | 33.333 | 369 | 157 | 6 | 76 | 361 | 53 | 415 | 8.90e-57 | 191 |
| Msa0294920 | AT2G30380.1 | 30.909 | 330 | 173 | 7 | 76 | 361 | 89 | 407 | 5.44e-34 | 130 |
| Msa0294920 | AT3G60680.1 | 27.297 | 370 | 177 | 9 | 73 | 361 | 132 | 490 | 1.39e-29 | 119 |
| Msa0294920 | AT4G34080.1 | 34.286 | 175 | 94 | 3 | 76 | 229 | 29 | 203 | 1.65e-23 | 99.0 |
| Msa0294920 | AT4G33320.1 | 34.091 | 176 | 94 | 4 | 76 | 229 | 29 | 204 | 3.62e-21 | 92.8 |
| Msa0294920 | AT2G32130.1 | 46.835 | 79 | 42 | 0 | 76 | 154 | 50 | 128 | 1.20e-18 | 82.4 |
| Msa0294920 | AT5G58960.1 | 34.932 | 146 | 73 | 4 | 223 | 353 | 402 | 540 | 1.19e-16 | 81.6 |
| Msa0294920 | AT5G58960.2 | 34.932 | 146 | 73 | 4 | 223 | 353 | 327 | 465 | 1.38e-16 | 81.3 |
| Msa0294920 | AT5G58960.3 | 34.932 | 146 | 73 | 4 | 223 | 353 | 327 | 465 | 1.38e-16 | 81.3 |
| Msa0294920 | AT4G36100.1 | 48.000 | 75 | 36 | 1 | 76 | 147 | 29 | 103 | 5.44e-14 | 71.2 |
Find 39 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAATGTTGTTCACTTATC+AGG | 0.152485 | 2_3:+47049742 | Msa0294920:CDS |
| TTACTGTTGTTCCTGGCTTT+AGG | 0.255240 | 2_3:+47050436 | Msa0294920:CDS |
| TCCATGTTTGTTTCATCCTT+TGG | 0.256313 | 2_3:-47049250 | None:intergenic |
| ATGAAATGAGATCTGCAAAA+TGG | 0.347278 | 2_3:+47049842 | Msa0294920:CDS |
| AGCTGAATCGAAGGAGATAA+AGG | 0.360621 | 2_3:+47049558 | Msa0294920:CDS |
| TTCCTAGCTAATTTCTTGCT+TGG | 0.369258 | 2_3:-47049166 | None:intergenic |
| AATTGCGCAAACGACGATCT+TGG | 0.395372 | 2_3:-47050102 | None:intergenic |
| GACGAAGGACAGTAGCAAAA+TGG | 0.407867 | 2_3:-47049777 | None:intergenic |
| TCAGAAGCTTCAATTCCATC+AGG | 0.419938 | 2_3:-47049439 | None:intergenic |
| GTTGTTCCTGGCTTTAGGAT+TGG | 0.422713 | 2_3:+47050441 | Msa0294920:CDS |
| CGTCGTTTGCGCAATTCTGC+AGG | 0.425402 | 2_3:+47050109 | Msa0294920:CDS |
| TTGCTTGGTGTCACTGCTGA+AGG | 0.427239 | 2_3:-47049151 | None:intergenic |
| TCAGAAGAAGAACCAGTTGT+TGG | 0.431414 | 2_3:+47050411 | Msa0294920:CDS |
| GAAACTCTCCACCACTCAAA+AGG | 0.448344 | 2_3:-47050200 | None:intergenic |
| CGAGGTTACCGCGAAGAAGT+TGG | 0.455237 | 2_3:+47049597 | Msa0294920:CDS |
| TGCTCTTAGATGAAGAACTT+TGG | 0.458200 | 2_3:-47049194 | None:intergenic |
| CGCGAAGAAGTTGGAATCAC+AGG | 0.476006 | 2_3:+47049606 | Msa0294920:CDS |
| CTGTGATTCCAACTTCTTCG+CGG | 0.496048 | 2_3:-47049605 | None:intergenic |
| TCAATTCCATCAGGGTCAAA+AGG | 0.497708 | 2_3:-47049430 | None:intergenic |
| ATAATGTTGTTCACTTATCA+GGG | 0.499714 | 2_3:+47049743 | Msa0294920:CDS |
| GCTGCAAGTATCGCTTTCTC+TGG | 0.503251 | 2_3:-47049538 | None:intergenic |
| ACAACAGTAAAACCAACAAC+TGG | 0.508318 | 2_3:-47050423 | None:intergenic |
| TGCTACTGTCCTTCGTCACG+CGG | 0.517199 | 2_3:+47049783 | Msa0294920:CDS |
| TGAAATGAGATCTGCAAAAT+GGG | 0.517744 | 2_3:+47049843 | Msa0294920:CDS |
| GCTGAATCGAAGGAGATAAA+GGG | 0.526870 | 2_3:+47049559 | Msa0294920:CDS |
| TCGATCTAACCGCGTGACGA+AGG | 0.536856 | 2_3:-47049792 | None:intergenic |
| CTTCTTCGCGGTAACCTCGT+AGG | 0.541450 | 2_3:-47049593 | None:intergenic |
| GAGAAGAGATTGAATCAAAG+TGG | 0.546796 | 2_3:+47049703 | Msa0294920:CDS |
| TGGAAAAGACTACAATAACT+TGG | 0.552801 | 2_3:+47049269 | Msa0294920:CDS |
| TCCAAAGGATGAAACAAACA+TGG | 0.604906 | 2_3:+47049249 | Msa0294920:CDS |
| GATACTTGCAGCTGAATCGA+AGG | 0.610878 | 2_3:+47049549 | Msa0294920:CDS |
| CAGAAGCTTCAATTCCATCA+GGG | 0.612641 | 2_3:-47049438 | None:intergenic |
| TATATCTGATACAAATCCAA+AGG | 0.615715 | 2_3:+47049234 | Msa0294920:CDS |
| GATCGATTCGAAACTTTGTG+AGG | 0.630009 | 2_3:+47049809 | Msa0294920:CDS |
| AGTATCGCTTTCTCTGGTGA+AGG | 0.630806 | 2_3:-47049532 | None:intergenic |
| CACCAAGCAAGAAATTAGCT+AGG | 0.637970 | 2_3:+47049164 | Msa0294920:CDS |
| AGGACAGTAGCAAAATGGCT+AGG | 0.648797 | 2_3:-47049772 | None:intergenic |
| TGATGCTATTGAACACAATG+TGG | 0.709156 | 2_3:+47049882 | Msa0294920:CDS |
| GGGCGTCATTAAAACCTACG+AGG | 0.782632 | 2_3:+47049579 | Msa0294920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTATAATAAAAAATGT+GGG | - | chr2_3:47046893-47046912 | None:intergenic | 10.0% |
| !!! | ATTTTGTATAATAAAAAATG+TGG | - | chr2_3:47046894-47046913 | None:intergenic | 10.0% |
| !!! | AACTATTATTACTACATTTT+AGG | + | chr2_3:47046570-47046589 | Msa0294920:intron | 15.0% |
| !!! | AAATTTGCAATGTTTATTTT+AGG | + | chr2_3:47046622-47046641 | Msa0294920:intron | 15.0% |
| !!! | TTTTATCATGAATCATATTT+CGG | + | chr2_3:47047486-47047505 | Msa0294920:intron | 15.0% |
| !! | ATATATTTATCACAAATACA+AGG | - | chr2_3:47047606-47047625 | None:intergenic | 15.0% |
| !! | ATAAATTTACAATAATGTCT+AGG | + | chr2_3:47047976-47047995 | Msa0294920:intron | 15.0% |
| !! | ATATATAATTACTTGATTGA+TGG | + | chr2_3:47048261-47048280 | Msa0294920:intron | 15.0% |
| !! | TATATAATTACTTGATTGAT+GGG | + | chr2_3:47048262-47048281 | Msa0294920:intron | 15.0% |
| !!! | TTTTATTCTGGTATAAAATA+AGG | + | chr2_3:47048431-47048450 | Msa0294920:intron | 15.0% |
| !! | TTCATCTATCTAAAAAAAAA+AGG | - | chr2_3:47048877-47048896 | None:intergenic | 15.0% |
| !! | ATAGAAAAAATCAACAAAAT+TGG | + | chr2_3:47050019-47050038 | Msa0294920:intron | 15.0% |
| !!! | AGGTATGTTTAATTTCTTTT+TGG | + | chr2_3:47046427-47046446 | Msa0294920:intron | 20.0% |
| !!! | GGACATTTTTGTAATTTTAA+AGG | + | chr2_3:47046721-47046740 | Msa0294920:intron | 20.0% |
| !!! | AGTATAAAAAAGCACTAAAA+AGG | - | chr2_3:47046963-47046982 | None:intergenic | 20.0% |
| !! | TTAATGCATATTAGTTGTAA+CGG | - | chr2_3:47047002-47047021 | None:intergenic | 20.0% |
| !! | ACAACTAATATGCATTAATA+TGG | + | chr2_3:47047004-47047023 | Msa0294920:intron | 20.0% |
| !! | CAAACAATATATGTAAAGTA+TGG | - | chr2_3:47047043-47047062 | None:intergenic | 20.0% |
| !! | AATAATGACAACAATAGTTA+AGG | - | chr2_3:47047276-47047295 | None:intergenic | 20.0% |
| !! | TAAATGCTAAATAAGATGTT+TGG | + | chr2_3:47047381-47047400 | Msa0294920:intron | 20.0% |
| !!! | TATCTTTTGTCATGATTATA+AGG | + | chr2_3:47047689-47047708 | Msa0294920:intron | 20.0% |
| !!! | CATAATGAAAGTATATAGAA+TGG | + | chr2_3:47048349-47048368 | Msa0294920:intron | 20.0% |
| !!! | TTGTGCATTATTTTTTATTC+TGG | + | chr2_3:47048419-47048438 | Msa0294920:intron | 20.0% |
| !!! | TAATGACAATATCTTTTACT+AGG | - | chr2_3:47049041-47049060 | None:intergenic | 20.0% |
| !!! | TCATTCTATACTTTTTTAGA+TGG | + | chr2_3:47049117-47049136 | Msa0294920:intron | 20.0% |
| ! | GTAAAAATGCAAAAACCAAA+CGG | - | chr2_3:47046460-47046479 | None:intergenic | 25.0% |
| ! | TATATGTAAAGTATGGCTAT+TGG | - | chr2_3:47047036-47047055 | None:intergenic | 25.0% |
| ! | TAGTTAAGGTATAATGGTTT+AGG | - | chr2_3:47047262-47047281 | None:intergenic | 25.0% |
| ! | CAACAATAGTTAAGGTATAA+TGG | - | chr2_3:47047268-47047287 | None:intergenic | 25.0% |
| ! | TAGTATGACATTTATGCAAA+TGG | + | chr2_3:47047333-47047352 | Msa0294920:intron | 25.0% |
| !! | TATGCAAATGGCTATATTTT+TGG | + | chr2_3:47047345-47047364 | Msa0294920:intron | 25.0% |
| !!! | AATTTTAACCATGTAACTGA+CGG | - | chr2_3:47047455-47047474 | None:intergenic | 25.0% |
| ! | AGATTTAACAATTGATGAGA+AGG | - | chr2_3:47047513-47047532 | None:intergenic | 25.0% |
| !! | TTTTGTCATGATTATAAGGT+TGG | + | chr2_3:47047693-47047712 | Msa0294920:intron | 25.0% |
| ! | TCAGTATCTCACTTTAAATA+TGG | + | chr2_3:47047726-47047745 | Msa0294920:intron | 25.0% |
| ! | CAGTATCTCACTTTAAATAT+GGG | + | chr2_3:47047727-47047746 | Msa0294920:intron | 25.0% |
| !!! | AACATGGACTCATTTTTTAA+TGG | + | chr2_3:47048001-47048020 | Msa0294920:intron | 25.0% |
| ! | ATCATTAACCCTAGAAAATT+TGG | + | chr2_3:47048067-47048086 | Msa0294920:intron | 25.0% |
| ! | TCATTAACCCTAGAAAATTT+GGG | + | chr2_3:47048068-47048087 | Msa0294920:intron | 25.0% |
| !! | GTTAAAACCCAAATTTTCTA+GGG | - | chr2_3:47048078-47048097 | None:intergenic | 25.0% |
| !! | AGTTAAAACCCAAATTTTCT+AGG | - | chr2_3:47048079-47048098 | None:intergenic | 25.0% |
| !!! | GGTTTTAACTGTTTTTTAGT+TGG | + | chr2_3:47048089-47048108 | Msa0294920:intron | 25.0% |
| !!! | CATGTTTTTTTACAAAGGAA+TGG | - | chr2_3:47048121-47048140 | None:intergenic | 25.0% |
| ! | AAAGGAATAATCAATCATGT+TGG | + | chr2_3:47048148-47048167 | Msa0294920:intron | 25.0% |
| !! | ACTAATTTGTAATGTGAAAG+TGG | - | chr2_3:47048241-47048260 | None:intergenic | 25.0% |
| !! | TTTAGTTTCATTATGCTTCA+AGG | - | chr2_3:47048305-47048324 | None:intergenic | 25.0% |
| ! | AAATAATGCACAACTTTGAA+TGG | - | chr2_3:47048412-47048431 | None:intergenic | 25.0% |
| ! | ATACAATTCTTAACAAGCAA+AGG | - | chr2_3:47048533-47048552 | None:intergenic | 25.0% |
| ! | AGCAAAGGAATAAAAATTGA+AGG | - | chr2_3:47048610-47048629 | None:intergenic | 25.0% |
| !!! | ATAGTGCTCTTTAATTTTTG+TGG | - | chr2_3:47048805-47048824 | None:intergenic | 25.0% |
| ! | ATAGAATGAAAATCAGCAAA+TGG | - | chr2_3:47049106-47049125 | None:intergenic | 25.0% |
| ! | TATATCTGATACAAATCCAA+AGG | + | chr2_3:47049234-47049253 | Msa0294920:CDS | 25.0% |
| ! | ATAATGTTGTTCACTTATCA+GGG | + | chr2_3:47049743-47049762 | Msa0294920:CDS | 25.0% |
| ! | CATTTGGAAGATTGAAATTA+GGG | - | chr2_3:47049984-47050003 | None:intergenic | 25.0% |
| ! | TCATTTGGAAGATTGAAATT+AGG | - | chr2_3:47049985-47050004 | None:intergenic | 25.0% |
| ! | TAATTTCAATCTTCCAAATG+AGG | + | chr2_3:47049984-47050003 | Msa0294920:intron | 25.0% |
| !!! | TGTTGATTTTTTCTATCATC+AGG | - | chr2_3:47050015-47050034 | None:intergenic | 25.0% |
| !! | AAAAATGATGACTCCATTTT+TGG | - | chr2_3:47050159-47050178 | None:intergenic | 25.0% |
| !!! | AAAATGGAGTCATCATTTTT+TGG | + | chr2_3:47050159-47050178 | Msa0294920:CDS | 25.0% |
| !!! | GATGCAAAAAAATCACTTTT+TGG | - | chr2_3:47050225-47050244 | None:intergenic | 25.0% |
| !!! | AAATTTTTCAAGTGGGAAAA+GGG | + | chr2_3:47050313-47050332 | Msa0294920:CDS | 25.0% |
| AAATGATGAGGAGAAATTGA+AGG | - | chr2_3:47046401-47046420 | None:intergenic | 30.0% | |
| ATACCTTGAGAAAAATGATG+AGG | - | chr2_3:47046413-47046432 | None:intergenic | 30.0% | |
| AGTATGATTGTAATCTGTGA+AGG | + | chr2_3:47046679-47046698 | Msa0294920:intron | 30.0% | |
| ! | TTGTAATCTGTGAAGGATTT+TGG | + | chr2_3:47046686-47046705 | Msa0294920:intron | 30.0% |
| !! | GGATTTTGGTATTTGAAGTA+TGG | + | chr2_3:47046700-47046719 | Msa0294920:intron | 30.0% |
| TGTTGAAATGACATAAACCT+TGG | + | chr2_3:47046824-47046843 | Msa0294920:intron | 30.0% | |
| GTTGAAATGACATAAACCTT+GGG | + | chr2_3:47046825-47046844 | Msa0294920:intron | 30.0% | |
| AATCATATAACATCTTCCCA+AGG | - | chr2_3:47046844-47046863 | None:intergenic | 30.0% | |
| ACATGTGAGCATAACTAAAT+TGG | + | chr2_3:47047093-47047112 | Msa0294920:intron | 30.0% | |
| ! | TTTGGGTTAAAACAGTATCA+AGG | + | chr2_3:47047169-47047188 | Msa0294920:intron | 30.0% |
| TTGGGTTAAAACAGTATCAA+GGG | + | chr2_3:47047170-47047189 | Msa0294920:intron | 30.0% | |
| ! | TTTAAAGTGAGATACTGACA+GGG | - | chr2_3:47047724-47047743 | None:intergenic | 30.0% |
| ! | ATTTAAAGTGAGATACTGAC+AGG | - | chr2_3:47047725-47047744 | None:intergenic | 30.0% |
| CATTTGTCAGTTTATCATTG+AGG | + | chr2_3:47047886-47047905 | Msa0294920:intron | 30.0% | |
| CAATAATGTCTAGGAAAACA+TGG | + | chr2_3:47047985-47048004 | Msa0294920:intron | 30.0% | |
| TAGGGTTAATGATTACATGT+TGG | - | chr2_3:47048060-47048079 | None:intergenic | 30.0% | |
| !!! | CTCTGCATGTTTTTTTACAA+AGG | - | chr2_3:47048126-47048145 | None:intergenic | 30.0% |
| AAAAAAACATGCAGAGAGAA+AGG | + | chr2_3:47048130-47048149 | Msa0294920:intron | 30.0% | |
| AGGAATAAAAATTGAAGGAC+AGG | - | chr2_3:47048605-47048624 | None:intergenic | 30.0% | |
| TGGAAAAGACTACAATAACT+TGG | + | chr2_3:47049269-47049288 | Msa0294920:CDS | 30.0% | |
| GTTTCTTAAAGAGAAGTTAG+TGG | + | chr2_3:47049654-47049673 | Msa0294920:intron | 30.0% | |
| GATAATGTTGTTCACTTATC+AGG | + | chr2_3:47049742-47049761 | Msa0294920:CDS | 30.0% | |
| ATGAAATGAGATCTGCAAAA+TGG | + | chr2_3:47049842-47049861 | Msa0294920:CDS | 30.0% | |
| TGAAATGAGATCTGCAAAAT+GGG | + | chr2_3:47049843-47049862 | Msa0294920:CDS | 30.0% | |
| ! | TTTTGCATCTTTTGCTGAAA+TGG | + | chr2_3:47050236-47050255 | Msa0294920:CDS | 30.0% |
| !! | TTGTTTAGCCTTTTCTTTTG+AGG | + | chr2_3:47050281-47050300 | Msa0294920:intron | 30.0% |
| !!! | TCAAGCTGAAATTTTTCAAG+TGG | + | chr2_3:47050305-47050324 | Msa0294920:CDS | 30.0% |
| !!! | CAAGCTGAAATTTTTCAAGT+GGG | + | chr2_3:47050306-47050325 | Msa0294920:CDS | 30.0% |
| !!! | GAAATTTTTCAAGTGGGAAA+AGG | + | chr2_3:47050312-47050331 | Msa0294920:CDS | 30.0% |
| ! | TAGATTTTCTGATGTGTACA+TGG | + | chr2_3:47050338-47050357 | Msa0294920:CDS | 30.0% |
| ATTGAAGGTGAAGTTGAATG+TGG | - | chr2_3:47046386-47046405 | None:intergenic | 35.0% | |
| !! | TCTCCTCATCATTTTTCTCA+AGG | + | chr2_3:47046407-47046426 | Msa0294920:intron | 35.0% |
| !! | CATTTTAGGTAGTATCTGTC+TGG | + | chr2_3:47046584-47046603 | Msa0294920:intron | 35.0% |
| CATTATGTCAGAAGTTCACA+TGG | - | chr2_3:47046802-47046821 | None:intergenic | 35.0% | |
| CATGTGAACTTCTGACATAA+TGG | + | chr2_3:47046800-47046819 | Msa0294920:intron | 35.0% | |
| ! | GCACTAAAAAGGCATAACAA+GGG | - | chr2_3:47046952-47046971 | None:intergenic | 35.0% |
| ! | AGCACTAAAAAGGCATAACA+AGG | - | chr2_3:47046953-47046972 | None:intergenic | 35.0% |
| ACGTTGCATTATATATGCAG+AGG | + | chr2_3:47047121-47047140 | Msa0294920:intron | 35.0% | |
| !!! | TCGAGTACAACGTTGATTTT+TGG | + | chr2_3:47047151-47047170 | Msa0294920:intron | 35.0% |
| !!! | CGAGTACAACGTTGATTTTT+GGG | + | chr2_3:47047152-47047171 | Msa0294920:intron | 35.0% |
| ! | TTGTTGCTTCAACTTTCAAG+TGG | + | chr2_3:47047415-47047434 | Msa0294920:intron | 35.0% |
| ! | TTTTTACACCGTCAGTTACA+TGG | + | chr2_3:47047444-47047463 | Msa0294920:intron | 35.0% |
| GTTCCTCAAACAAACACAAA+GGG | - | chr2_3:47047666-47047685 | None:intergenic | 35.0% | |
| TGTTCCTCAAACAAACACAA+AGG | - | chr2_3:47047667-47047686 | None:intergenic | 35.0% | |
| AATCCTAAGGATTATGAGTC+AGG | + | chr2_3:47047822-47047841 | Msa0294920:intron | 35.0% | |
| TTTCCTGACTCATAATCCTT+AGG | - | chr2_3:47047828-47047847 | None:intergenic | 35.0% | |
| CACGTACTAGAAAGAAAACA+AGG | - | chr2_3:47048378-47048397 | None:intergenic | 35.0% | |
| !! | CTTGTTTTCTTTCTAGTACG+TGG | + | chr2_3:47048376-47048395 | Msa0294920:intron | 35.0% |
| ! | AAAAAGCATGCAAGAAGCAA+AGG | - | chr2_3:47048625-47048644 | None:intergenic | 35.0% |
| TTGCTTTAACACATAGATCG+AGG | - | chr2_3:47048934-47048953 | None:intergenic | 35.0% | |
| TTCCTAGCTAATTTCTTGCT+TGG | - | chr2_3:47049169-47049188 | None:intergenic | 35.0% | |
| TGCTCTTAGATGAAGAACTT+TGG | - | chr2_3:47049197-47049216 | None:intergenic | 35.0% | |
| TCCAAAGGATGAAACAAACA+TGG | + | chr2_3:47049249-47049268 | Msa0294920:CDS | 35.0% | |
| TCCATGTTTGTTTCATCCTT+TGG | - | chr2_3:47049253-47049272 | None:intergenic | 35.0% | |
| TTCAGCATATGCACCTTTAA+CGG | - | chr2_3:47049392-47049411 | None:intergenic | 35.0% | |
| GAGAAGAGATTGAATCAAAG+TGG | + | chr2_3:47049703-47049722 | Msa0294920:CDS | 35.0% | |
| TGATGCTATTGAACACAATG+TGG | + | chr2_3:47049882-47049901 | Msa0294920:CDS | 35.0% | |
| ! | GAGACTTGTTCATCCAAAAA+TGG | + | chr2_3:47050143-47050162 | Msa0294920:CDS | 35.0% |
| !! | TTTTTGGCAACATGATTCAC+AGG | + | chr2_3:47050175-47050194 | Msa0294920:CDS | 35.0% |
| ! | TTTTGCTGAAATGGCTAAGA+GGG | + | chr2_3:47050245-47050264 | Msa0294920:CDS | 35.0% |
| AGCTTGAACCTCAAAAGAAA+AGG | - | chr2_3:47050292-47050311 | None:intergenic | 35.0% | |
| ACAACAGTAAAACCAACAAC+TGG | - | chr2_3:47050426-47050445 | None:intergenic | 35.0% | |
| TGTTGTTCTAACACCAAACG+CGG | - | chr2_3:47046298-47046317 | None:intergenic | 40.0% | |
| !! | CTTTTTGGTCTGTTACCGTT+TGG | + | chr2_3:47046442-47046461 | Msa0294920:intron | 40.0% |
| ! | GTATCTGTCTGGAAAAGTGT+TGG | + | chr2_3:47046595-47046614 | Msa0294920:intron | 40.0% |
| !! | GTTGTAACGGATCTATCACA+AGG | - | chr2_3:47046989-47047008 | None:intergenic | 40.0% |
| ! | AGTATCAAGGGTTCTAGTCA+CGG | + | chr2_3:47047182-47047201 | Msa0294920:intron | 40.0% |
| CAAACAAACACAAAGGGCAA+GGG | - | chr2_3:47047660-47047679 | None:intergenic | 40.0% | |
| TCAAACAAACACAAAGGGCA+AGG | - | chr2_3:47047661-47047680 | None:intergenic | 40.0% | |
| TTGCCCTTTGTGTTTGTTTG+AGG | + | chr2_3:47047660-47047679 | Msa0294920:intron | 40.0% | |
| GTCTAGATCTTCAAAGATGC+TGG | + | chr2_3:47047782-47047801 | Msa0294920:intron | 40.0% | |
| ATGCTGGATATGCATATCTC+AGG | + | chr2_3:47047798-47047817 | Msa0294920:intron | 40.0% | |
| TGCTGGATATGCATATCTCA+GGG | + | chr2_3:47047799-47047818 | Msa0294920:intron | 40.0% | |
| CACCAAGCAAGAAATTAGCT+AGG | + | chr2_3:47049164-47049183 | Msa0294920:CDS | 40.0% | |
| GCTAGCATTTCAACCGTTAA+AGG | + | chr2_3:47049376-47049395 | Msa0294920:intron | 40.0% | |
| TCAATTCCATCAGGGTCAAA+AGG | - | chr2_3:47049433-47049452 | None:intergenic | 40.0% | |
| CAGAAGCTTCAATTCCATCA+GGG | - | chr2_3:47049441-47049460 | None:intergenic | 40.0% | |
| TCAGAAGCTTCAATTCCATC+AGG | - | chr2_3:47049442-47049461 | None:intergenic | 40.0% | |
| AGCTGAATCGAAGGAGATAA+AGG | + | chr2_3:47049558-47049577 | Msa0294920:CDS | 40.0% | |
| GCTGAATCGAAGGAGATAAA+GGG | + | chr2_3:47049559-47049578 | Msa0294920:CDS | 40.0% | |
| !! | GATCGATTCGAAACTTTGTG+AGG | + | chr2_3:47049809-47049828 | Msa0294920:CDS | 40.0% |
| ! | ATTCACAGGAACCTTTTGAG+TGG | + | chr2_3:47050189-47050208 | Msa0294920:CDS | 40.0% |
| ! | CTTTTGCTGAAATGGCTAAG+AGG | + | chr2_3:47050244-47050263 | Msa0294920:CDS | 40.0% |
| TCAGAAGAAGAACCAGTTGT+TGG | + | chr2_3:47050411-47050430 | Msa0294920:CDS | 40.0% | |
| !!! | GTTGGTTTTACTGTTGTTCC+TGG | + | chr2_3:47050429-47050448 | Msa0294920:CDS | 40.0% |
| ! | TTACTGTTGTTCCTGGCTTT+AGG | + | chr2_3:47050436-47050455 | Msa0294920:CDS | 40.0% |
| ! | GTTTTACCAATCCTAAAGCC+AGG | - | chr2_3:47050450-47050469 | None:intergenic | 40.0% |
| !! | GTAACGGATCTATCACAAGG+TGG | - | chr2_3:47046986-47047005 | None:intergenic | 45.0% |
| ! | GTATCAAGGGTTCTAGTCAC+GGG | + | chr2_3:47047183-47047202 | Msa0294920:intron | 45.0% |
| TTCTAGTCACGGGAAACACA+TGG | + | chr2_3:47047193-47047212 | Msa0294920:intron | 45.0% | |
| GCATATCTCAGGGAATCCTA+AGG | + | chr2_3:47047809-47047828 | Msa0294920:intron | 45.0% | |
| !! | TTATGCTTCAAGGAGCGTTG+AGG | - | chr2_3:47048295-47048314 | None:intergenic | 45.0% |
| TCGAGGACTTCAGTAGTGAA+GGG | - | chr2_3:47048917-47048936 | None:intergenic | 45.0% | |
| ATCGAGGACTTCAGTAGTGA+AGG | - | chr2_3:47048918-47048937 | None:intergenic | 45.0% | |
| AGTATCGCTTTCTCTGGTGA+AGG | - | chr2_3:47049535-47049554 | None:intergenic | 45.0% | |
| GATACTTGCAGCTGAATCGA+AGG | + | chr2_3:47049549-47049568 | Msa0294920:CDS | 45.0% | |
| CTGTGATTCCAACTTCTTCG+CGG | - | chr2_3:47049608-47049627 | None:intergenic | 45.0% | |
| AGGACAGTAGCAAAATGGCT+AGG | - | chr2_3:47049775-47049794 | None:intergenic | 45.0% | |
| GACGAAGGACAGTAGCAAAA+TGG | - | chr2_3:47049780-47049799 | None:intergenic | 45.0% | |
| !! | TCATCAGGAAGTGCCTCATT+TGG | - | chr2_3:47050000-47050019 | None:intergenic | 45.0% |
| AATTGCGCAAACGACGATCT+TGG | - | chr2_3:47050105-47050124 | None:intergenic | 45.0% | |
| GAAACTCTCCACCACTCAAA+AGG | - | chr2_3:47050203-47050222 | None:intergenic | 45.0% | |
| !! | GTTGTTCCTGGCTTTAGGAT+TGG | + | chr2_3:47050441-47050460 | Msa0294920:CDS | 45.0% |
| !! | TCAAGGAGCGTTGAGGCAAT+AGG | - | chr2_3:47048288-47048307 | None:intergenic | 50.0% |
| !! | TTGCTTGGTGTCACTGCTGA+AGG | - | chr2_3:47049154-47049173 | None:intergenic | 50.0% |
| ! | CAGACACCTTTTGACCCTGA+TGG | + | chr2_3:47049424-47049443 | Msa0294920:CDS | 50.0% |
| ! | GCTGCAAGTATCGCTTTCTC+TGG | - | chr2_3:47049541-47049560 | None:intergenic | 50.0% |
| GGGCGTCATTAAAACCTACG+AGG | + | chr2_3:47049579-47049598 | Msa0294920:CDS | 50.0% | |
| CGCGAAGAAGTTGGAATCAC+AGG | + | chr2_3:47049606-47049625 | Msa0294920:CDS | 50.0% | |
| !! | CACAGGAACCTTTTGAGTGG+TGG | + | chr2_3:47050192-47050211 | Msa0294920:CDS | 50.0% |
| CTTCTTCGCGGTAACCTCGT+AGG | - | chr2_3:47049596-47049615 | None:intergenic | 55.0% | |
| CGAGGTTACCGCGAAGAAGT+TGG | + | chr2_3:47049597-47049616 | Msa0294920:CDS | 55.0% | |
| TGCTACTGTCCTTCGTCACG+CGG | + | chr2_3:47049783-47049802 | Msa0294920:CDS | 55.0% | |
| TCGATCTAACCGCGTGACGA+AGG | - | chr2_3:47049795-47049814 | None:intergenic | 55.0% | |
| CGTCGTTTGCGCAATTCTGC+AGG | + | chr2_3:47050109-47050128 | Msa0294920:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 47046293 | 47050485 | 47046293 | ID=Msa0294920;Name=Msa0294920 |
| chr2_3 | mRNA | 47046293 | 47050485 | 47046293 | ID=Msa0294920-mRNA-1;Parent=Msa0294920;Name=Msa0294920-mRNA-1;_AED=0.28;_eAED=0.29;_QI=0|0|0|1|0|0|7|0|361 |
| chr2_3 | exon | 47046293 | 47046298 | 47046293 | ID=Msa0294920-mRNA-1:exon:14674;Parent=Msa0294920-mRNA-1 |
| chr2_3 | exon | 47049136 | 47049342 | 47049136 | ID=Msa0294920-mRNA-1:exon:14675;Parent=Msa0294920-mRNA-1 |
| chr2_3 | exon | 47049381 | 47049390 | 47049381 | ID=Msa0294920-mRNA-1:exon:14676;Parent=Msa0294920-mRNA-1 |
| chr2_3 | exon | 47049398 | 47049627 | 47049398 | ID=Msa0294920-mRNA-1:exon:14677;Parent=Msa0294920-mRNA-1 |
| chr2_3 | exon | 47049670 | 47049903 | 47049670 | ID=Msa0294920-mRNA-1:exon:14678;Parent=Msa0294920-mRNA-1 |
| chr2_3 | exon | 47050054 | 47050266 | 47050054 | ID=Msa0294920-mRNA-1:exon:14679;Parent=Msa0294920-mRNA-1 |
| chr2_3 | exon | 47050303 | 47050485 | 47050303 | ID=Msa0294920-mRNA-1:exon:14680;Parent=Msa0294920-mRNA-1 |
| chr2_3 | CDS | 47046293 | 47046298 | 47046293 | ID=Msa0294920-mRNA-1:cds;Parent=Msa0294920-mRNA-1 |
| chr2_3 | CDS | 47049136 | 47049342 | 47049136 | ID=Msa0294920-mRNA-1:cds;Parent=Msa0294920-mRNA-1 |
| chr2_3 | CDS | 47049381 | 47049390 | 47049381 | ID=Msa0294920-mRNA-1:cds;Parent=Msa0294920-mRNA-1 |
| chr2_3 | CDS | 47049398 | 47049627 | 47049398 | ID=Msa0294920-mRNA-1:cds;Parent=Msa0294920-mRNA-1 |
| chr2_3 | CDS | 47049670 | 47049903 | 47049670 | ID=Msa0294920-mRNA-1:cds;Parent=Msa0294920-mRNA-1 |
| chr2_3 | CDS | 47050054 | 47050266 | 47050054 | ID=Msa0294920-mRNA-1:cds;Parent=Msa0294920-mRNA-1 |
| chr2_3 | CDS | 47050303 | 47050485 | 47050303 | ID=Msa0294920-mRNA-1:cds;Parent=Msa0294920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
