AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0519810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0519810 MtrunA17_Chr3g0135191 98.720 703 3 3 1 702 1 698 0.0 1417
Msa0519810 MtrunA17_Chr3g0139081 64.665 716 210 11 1 702 1 687 0.0 907
Msa0519810 MtrunA17_Chr4g0000581 63.194 720 226 7 1 702 1 699 0.0 884
Msa0519810 MtrunA17_Chr6g0451381 66.261 658 186 8 53 701 35 665 0.0 848
Msa0519810 MtrunA17_Chr8g0339101 66.516 663 191 7 46 701 63 701 0.0 839
Msa0519810 MtrunA17_Chr1g0179441 42.125 527 273 5 176 698 19 517 1.06e-147 440
Msa0519810 MtrunA17_Chr1g0179421 41.176 527 278 5 176 698 19 517 1.32e-146 437
Msa0519810 MtrunA17_Chr1g0179381 41.635 526 276 3 176 698 19 516 6.76e-146 436
Msa0519810 MtrunA17_Chr7g0265711 41.556 527 276 5 176 698 28 526 5.00e-144 431
Msa0519810 MtrunA17_Chr1g0198111 45.513 468 226 4 232 698 85 524 5.05e-144 431
Msa0519810 MtrunA17_Chr4g0027221 41.746 527 280 7 185 701 33 542 3.91e-139 419
Msa0519810 MtrunA17_Chr7g0264621 40.377 530 285 6 176 701 25 527 4.08e-138 416
Msa0519810 MtrunA17_Chr1g0179391 48.910 321 163 1 288 607 2 322 2.00e-114 348
Msa0519810 MtrunA17_Chr4g0064791 52.083 144 57 4 212 344 58 200 8.88e-37 137
Msa0519810 MtrunA17_Chr1g0179401 38.938 113 65 2 176 285 19 130 7.41e-17 78.6
Msa0519810 MtrunA17_Chr4g0037831 38.318 107 52 2 52 158 11 103 2.95e-14 69.7
Msa0519810 MtrunA17_Chr4g0060331 37.500 104 51 2 52 155 11 100 5.15e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0519810 AT4G07960.1 77.139 713 138 8 1 702 1 699 0.0 1072
Msa0519810 AT4G07960.2 77.139 713 138 8 1 702 1 699 0.0 1072
Msa0519810 AT4G31590.1 65.546 714 212 8 1 702 1 692 0.0 927
Msa0519810 AT2G24630.1 63.534 713 226 7 1 702 1 690 0.0 905
Msa0519810 AT2G24630.2 63.534 713 226 7 1 702 1 690 0.0 905
Msa0519810 AT3G28180.1 64.011 703 200 11 18 702 6 673 0.0 862
Msa0519810 AT3G07330.1 64.253 663 198 7 51 702 48 682 0.0 845
Msa0519810 AT3G07330.2 64.253 663 198 7 51 702 48 682 0.0 845
Msa0519810 AT5G22740.1 41.431 531 279 5 176 701 29 532 5.12e-143 429
Msa0519810 AT5G03760.1 40.755 530 276 5 179 701 32 530 1.10e-139 420
Msa0519810 AT1G23480.1 40.678 531 282 5 176 701 51 553 4.54e-139 419
Msa0519810 AT1G23480.2 40.678 531 282 5 176 701 51 553 4.54e-139 419
Msa0519810 AT2G35650.1 41.199 517 269 5 176 688 51 536 4.04e-138 417
Msa0519810 AT5G16190.3 40.987 527 278 6 176 698 6 503 7.85e-137 412
Msa0519810 AT4G13410.1 44.444 459 245 5 176 630 43 495 1.65e-136 412
Msa0519810 AT1G23480.3 41.223 507 265 5 200 701 3 481 2.44e-135 407
Msa0519810 AT5G16190.2 45.638 447 238 4 176 618 6 451 8.44e-135 405
Msa0519810 AT5G16190.1 43.376 468 235 4 232 698 4 442 3.02e-134 403
Msa0519810 AT1G24070.1 38.621 580 319 8 125 698 3 551 4.55e-134 406
Msa0519810 AT2G35650.4 43.668 458 226 4 232 688 38 464 5.43e-134 404
Msa0519810 AT2G35650.2 43.668 458 226 4 232 688 38 464 5.43e-134 404
Msa0519810 AT3G56000.1 40.377 530 279 6 180 701 26 526 7.71e-131 397
Msa0519810 AT5G16190.4 38.571 560 278 7 176 698 6 536 1.19e-129 394
Msa0519810 AT4G16590.1 37.879 528 259 8 176 698 56 519 2.30e-117 362
Msa0519810 AT1G23480.4 41.205 415 216 2 288 701 21 408 2.19e-112 345
Msa0519810 AT4G13410.3 47.633 338 171 2 294 630 2 334 6.02e-110 338
Msa0519810 AT2G35650.3 41.337 404 206 3 286 688 5 378 1.97e-108 335
Msa0519810 AT4G13410.2 47.516 322 165 3 176 494 43 363 7.94e-99 310
Msa0519810 AT1G24070.2 42.373 413 219 6 125 532 3 401 2.34e-98 309

Find 173 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAATCAAAGATTGTGTAAT+TGG 0.117866 3_4:-72112061 None:intergenic
CAGCAGCTCTATGAGCTTTA+AGG 0.164902 3_4:-72111303 None:intergenic
AGTTCATCAATGTCCCAATT+TGG 0.224089 3_4:-72111175 None:intergenic
TATTGCAGCAGTGTGTAATT+TGG 0.228223 3_4:+72111988 Msa0519810:CDS
CTGTAAGCTTCGTAAGATTC+AGG 0.244033 3_4:-72112875 None:intergenic
GATAGATTGGTTCTTTGTTT+AGG 0.261285 3_4:+72111715 Msa0519810:CDS
CAAATTGCTCCTGCATTGTT+TGG 0.262621 3_4:+72111337 Msa0519810:CDS
AAATGGCACCTTTGTTCAAT+TGG 0.282770 3_4:+72111101 Msa0519810:exon
AATTACACAATCTTTGATTA+AGG 0.283313 3_4:+72112063 Msa0519810:CDS
CTTGTTGTTCCACTTCAAAA+TGG 0.290451 3_4:-72112568 None:intergenic
GGGCACCGACATTTGGTGTT+AGG 0.298422 3_4:+72111578 Msa0519810:CDS
GTCAAACGCCGCGTCGCTTC+TGG 0.301307 3_4:+72111373 Msa0519810:CDS
TTGGTTGGTCTAGACTTAAT+TGG 0.308940 3_4:+72113968 Msa0519810:CDS
CATTGAACCCAAAGAAATTA+AGG 0.311415 3_4:-72112604 None:intergenic
TCTGAAACATCACCACCTTT+TGG 0.311924 3_4:-72111775 None:intergenic
CTACAGGATAATGACGAATT+AGG 0.322967 3_4:+72112467 Msa0519810:intron
CTTAATTTCTTTGGGTTCAA+TGG 0.325307 3_4:+72112605 Msa0519810:CDS
ACTATGAAAGGAAAAGCTTT+TGG 0.326733 3_4:-72113569 None:intergenic
GCTGTTCGAGCTCATCTTCA+TGG 0.327528 3_4:+72112710 Msa0519810:CDS
GTGAACAAGTAGACTGAAAA+AGG 0.332473 3_4:+72113990 Msa0519810:exon
TTTCACATAGCTACAATTCA+TGG 0.336791 3_4:-72112179 None:intergenic
GAGGACCACTGTGGAGGATA+TGG 0.337343 3_4:+72112682 Msa0519810:CDS
GATGACCCTCGTTGATGCTT+TGG 0.351008 3_4:-72113743 None:intergenic
AATAGAGTGAACGAGTAAAA+TGG 0.354129 3_4:-72113440 None:intergenic
AATGGCACCTTTGTTCAATT+GGG 0.361924 3_4:+72111102 Msa0519810:exon
CCGACATGGTGTTCTCAAAT+AGG 0.365826 3_4:-72113601 None:intergenic
TTGTTTGCCTGATGTCATAA+AGG 0.368029 3_4:+72112946 Msa0519810:CDS
CATTCTGTTATTTGTCATCA+TGG 0.368762 3_4:+72114232 Msa0519810:three_prime_UTR
TCCAAAACTTACAACAAAAC+GGG 0.373273 3_4:-72110767 None:intergenic
TCTTTCATTTCTTCCAGATC+AGG 0.374102 3_4:-72113770 None:intergenic
TATTCAGAGTATAGATAGAT+TGG 0.375619 3_4:+72111702 Msa0519810:CDS
TTTGGGTTCAATGGTACTGC+TGG 0.378978 3_4:+72112614 Msa0519810:CDS
CAGCAGCATAGATGGCATTC+TGG 0.380899 3_4:+72112902 Msa0519810:CDS
GATGTTTCAGATCTTGAATC+TGG 0.386991 3_4:+72111787 Msa0519810:CDS
GATCTTGAATCTGGAGATAA+GGG 0.389985 3_4:+72111796 Msa0519810:CDS
TTAAGGAGGAGGTTCATAAA+TGG 0.393056 3_4:+72112080 Msa0519810:CDS
GTATTTGAAGGAACTTGCTT+TGG 0.396618 3_4:+72113853 Msa0519810:CDS
AAGAAATGAAAGAGGAAATC+AGG 0.399107 3_4:+72113780 Msa0519810:CDS
TCAATGGTACTGCTGGAGTT+TGG 0.399721 3_4:+72112621 Msa0519810:CDS
AGGGTCATCAGCACCTGATC+TGG 0.403205 3_4:+72113757 Msa0519810:CDS
ACCTTGGCCTTTATGACATC+AGG 0.403380 3_4:-72112953 None:intergenic
GGAGACAACAATTTATTTGA+GGG 0.407140 3_4:+72114130 Msa0519810:three_prime_UTR
ACAGAAAACAGCAGCATAGA+TGG 0.412430 3_4:+72112894 Msa0519810:CDS
GTCCAAAACTTACAACAAAA+CGG 0.417062 3_4:-72110768 None:intergenic
TTTCTCCAACGCTTTGTATG+AGG 0.422784 3_4:+72114458 Msa0519810:three_prime_UTR
TGCTCCACATCTTGAATTGT+GGG 0.424265 3_4:+72111558 Msa0519810:CDS
GAATTGTGGGCACCGACATT+TGG 0.427447 3_4:+72111571 Msa0519810:CDS
TGCTGGAGTTTGGAGAATAA+AGG 0.431597 3_4:+72112631 Msa0519810:CDS
GCACGTTTATGTCTTTGATT+CGG 0.433109 3_4:-72110693 None:intergenic
ACGCACTTCCTAGCTGGAAT+AGG 0.438031 3_4:-72113652 None:intergenic
TAATCAAAGATTGTGTAATT+GGG 0.439751 3_4:-72112060 None:intergenic
AGATAAGGGTTTCTTCCCTA+TGG 0.441243 3_4:+72111810 Msa0519810:CDS
TTCTATTCATAGAGCCTTGG+TGG 0.441893 3_4:-72114102 None:intergenic
AGATCTTGAATCTGGAGATA+AGG 0.445844 3_4:+72111795 Msa0519810:CDS
CTTTCTTGCAGATAAGCATA+TGG 0.446258 3_4:+72113366 Msa0519810:intron
ATGTTATGTTATGACCTGTT+TGG 0.454334 3_4:-72110795 None:intergenic
CAAGGTGTTTCTATGTTTGT+CGG 0.458917 3_4:+72111483 Msa0519810:CDS
AGTTTGGAGAATAAAGGCTT+TGG 0.460085 3_4:+72112637 Msa0519810:CDS
AAATTCAATGCTATGATCTC+AGG 0.461079 3_4:+72113629 Msa0519810:CDS
TGGAGACAACAATTTATTTG+AGG 0.463348 3_4:+72114129 Msa0519810:three_prime_UTR
CTTAAAGCTCATAGAGCTGC+TGG 0.464353 3_4:+72111304 Msa0519810:CDS
GGCTCTATGAATAGAATCAC+TGG 0.470527 3_4:+72114109 Msa0519810:three_prime_UTR
TCTTCAAGAGACAAAGGAAA+AGG 0.476352 3_4:+72111247 Msa0519810:CDS
GTTGAATTGAATTTAGTAGC+TGG 0.480977 3_4:-72114191 None:intergenic
GGCACCGACATTTGGTGTTA+GGG 0.481814 3_4:+72111579 Msa0519810:CDS
ATTCGTACGCACTTCCTAGC+TGG 0.482898 3_4:-72113658 None:intergenic
TGGGACATTGATGAACTTGA+AGG 0.483005 3_4:+72111181 Msa0519810:CDS
AACAACCCACGCAGGAATCT+CGG 0.484233 3_4:-72113501 None:intergenic
ACAATCTTTGATTAAGGAGG+AGG 0.486658 3_4:+72112069 Msa0519810:CDS
GTGCTCCACATCTTGAATTG+TGG 0.487800 3_4:+72111557 Msa0519810:CDS
AGCTAGGAAGTGCGTACGAA+TGG 0.488925 3_4:+72113660 Msa0519810:CDS
AGAAGCGACGCGGCGTTTGA+CGG 0.489772 3_4:-72111371 None:intergenic
AAAATTAAACCTGTTCCAAA+AGG 0.496075 3_4:+72111760 Msa0519810:CDS
TTCTACTTCTTGCTATTCCA+AGG 0.497931 3_4:+72113932 Msa0519810:CDS
CGGTGGTGTTGGTGGTGGTA+GGG 0.498109 3_4:+72111417 Msa0519810:CDS
ATCAGGGGTAGGCTGAAAAT+CGG 0.498763 3_4:-72112230 None:intergenic
TAAGAAGTCCGGTCGTTCAT+CGG 0.499552 3_4:+72113691 Msa0519810:CDS
TTTAGTAGTACCTTAAAATG+AGG 0.500382 3_4:-72112271 None:intergenic
TAGGACTTGTGCAAGCTAGA+TGG 0.503401 3_4:+72112486 Msa0519810:CDS
CCCCATGTGCAATGAGAAAG+AGG 0.505230 3_4:+72111846 Msa0519810:CDS
CACGCAGGAATCTCGGCCTC+CGG 0.505996 3_4:-72113494 None:intergenic
ATTAGAGATGGGTACAAAGC+TGG 0.509776 3_4:+72112142 Msa0519810:CDS
ATCGACGGTGGTGTTGGTGG+TGG 0.510363 3_4:+72111412 Msa0519810:CDS
AAAAGTAAATCTTCTTCTGA+AGG 0.511562 3_4:-72111205 None:intergenic
ACATAACAAAATGTATTTGA+AGG 0.516862 3_4:+72113841 Msa0519810:CDS
GCGGATATCGACGGTGGTGT+TGG 0.521978 3_4:+72111406 Msa0519810:CDS
TTGAGAAATGACATGACTGC+TGG 0.523060 3_4:-72113533 None:intergenic
ATCACCCTCCGATGAACGAC+CGG 0.523064 3_4:-72113699 None:intergenic
ACGGTGGTGTTGGTGGTGGT+AGG 0.524657 3_4:+72111416 Msa0519810:CDS
CAGCAGTGTGTAATTTGGAT+TGG 0.524727 3_4:+72111993 Msa0519810:CDS
GGGATCTGAACAAGAACCAT+AGG 0.528282 3_4:-72111826 None:intergenic
GCAACACCAACTTTCTAAGA+AGG 0.529828 3_4:-72113418 None:intergenic
CCTCTTTCTCATTGCACATG+GGG 0.530589 3_4:-72111846 None:intergenic
CGACACCGTGTGATTAGAGA+TGG 0.531408 3_4:+72112130 Msa0519810:CDS
TGAATTTAGTAGCTGGAGTG+AGG 0.532020 3_4:-72114184 None:intergenic
ACCTCTTTCTCATTGCACAT+GGG 0.534788 3_4:-72111847 None:intergenic
TGATTCTATTCATAGAGCCT+TGG 0.536139 3_4:-72114105 None:intergenic
TTCGAGCTCATCTTCATGGA+TGG 0.538595 3_4:+72112714 Msa0519810:CDS
CAAAGGCGAAACAATTGCAT+TGG 0.541740 3_4:-72112926 None:intergenic
AGAACCCTACAGTGAAAAGT+AGG 0.543807 3_4:+72111446 Msa0519810:CDS
AGGAGATACGGTACTATGAA+AGG 0.544564 3_4:-72113581 None:intergenic
AAGCTGGTGGTTGGTTGGAG+AGG 0.544703 3_4:+72112663 Msa0519810:CDS
TACACAATCTTTGATTAAGG+AGG 0.545280 3_4:+72112066 Msa0519810:CDS
AGGAGTCTACTTTCAGCTCA+AGG 0.545457 3_4:+72113902 Msa0519810:CDS
GCTAGGAAGTGCGTACGAAT+GGG 0.547002 3_4:+72113661 Msa0519810:CDS
TACCTCTTTCTCATTGCACA+TGG 0.547325 3_4:-72111848 None:intergenic
GATATCGACGGTGGTGTTGG+TGG 0.547514 3_4:+72111409 Msa0519810:CDS
ATGGCACCTTTGTTCAATTG+GGG 0.552161 3_4:+72111103 Msa0519810:CDS
GTTCATAAATGGCAAGAAGA+AGG 0.553785 3_4:+72112091 Msa0519810:CDS
ATAAAGGCTTTGGAAGAAGC+TGG 0.554855 3_4:+72112647 Msa0519810:CDS
TGGGTAGTCACTAAGAAGTC+CGG 0.559717 3_4:+72113680 Msa0519810:CDS
TGATCTGGAAGAAATGAAAG+AGG 0.560195 3_4:+72113772 Msa0519810:CDS
GGAAGAAGCTGGTGGTTGGT+TGG 0.560517 3_4:+72112658 Msa0519810:CDS
GTGTTCTCAAATAGGAGATA+CGG 0.560798 3_4:-72113593 None:intergenic
TTCTTAAGGAAATCAGGGGT+AGG 0.562002 3_4:-72112241 None:intergenic
CTTTGGAAGAAGCTGGTGGT+TGG 0.566030 3_4:+72112654 Msa0519810:CDS
GAAGTCCGGTCGTTCATCGG+AGG 0.568647 3_4:+72113694 Msa0519810:CDS
GCCTGATGTCATAAAGGCCA+AGG 0.569837 3_4:+72112952 Msa0519810:CDS
ATTAAACCTGTTCCAAAAGG+TGG 0.570493 3_4:+72111763 Msa0519810:CDS
TCCCATGACAATGTTCGTAC+CGG 0.571170 3_4:+72113475 Msa0519810:CDS
GGAGTCTACTTTCAGCTCAA+GGG 0.571457 3_4:+72113903 Msa0519810:CDS
AAAACGCTAAACAACTCACA+TGG 0.573149 3_4:+72111272 Msa0519810:CDS
CTCCGGTACGAACATTGTCA+TGG 0.573525 3_4:-72113477 None:intergenic
AATTCTTCTTCAAGAGACAA+AGG 0.578590 3_4:+72111241 Msa0519810:CDS
CATTGCCTCATACAAAGCGT+TGG 0.580174 3_4:-72114463 None:intergenic
ATAGAAACAGGATGAGGTCA+AGG 0.580885 3_4:-72114433 None:intergenic
GGAGGCCGAGATTCCTGCGT+GGG 0.590482 3_4:+72113496 Msa0519810:CDS
GAAACTAAACCAAACAATGC+AGG 0.595411 3_4:-72111346 None:intergenic
TTTGTGAGAAATTGCAAAGG+AGG 0.595685 3_4:-72111658 None:intergenic
AAGTCCGGTCGTTCATCGGA+GGG 0.596120 3_4:+72113695 Msa0519810:CDS
TAGGTTCTATACATTCATCA+AGG 0.599235 3_4:+72111465 Msa0519810:CDS
TACACGATGAATTATATACA+TGG 0.601040 3_4:+72114063 Msa0519810:three_prime_UTR
TCCGGTACGAACATTGTCAT+GGG 0.602923 3_4:-72113476 None:intergenic
TTCGCACCCCAATTGAACAA+AGG 0.603697 3_4:-72111109 None:intergenic
AGAGGAAATCAGGAGACAAG+AGG 0.607350 3_4:+72113790 Msa0519810:CDS
ACGGTGTCGGTACAAAATGT+TGG 0.614765 3_4:-72112116 None:intergenic
GGTGCCCACAATTCAAGATG+TGG 0.618003 3_4:-72111562 None:intergenic
CCAAAACTTACAACAAAACG+GGG 0.621248 3_4:-72110766 None:intergenic
CATGACAATGTTCGTACCGG+AGG 0.621883 3_4:+72113478 Msa0519810:CDS
ATCTCAGGCCTATTCCAGCT+AGG 0.627956 3_4:+72113644 Msa0519810:CDS
AGCGACGCGGCGTTTGACGG+CGG 0.631539 3_4:-72111368 None:intergenic
AAGATTCAGGTAACTCACAT+TGG 0.636142 3_4:-72112862 None:intergenic
GGATCTGAACAAGAACCATA+GGG 0.636957 3_4:-72111825 None:intergenic
TGAGAAATGACATGACTGCT+GGG 0.640975 3_4:-72113532 None:intergenic
GCAGTACCTCCACATCATTG+AGG 0.643002 3_4:-72112748 None:intergenic
TTATGACATCAGGCAAACAA+AGG 0.646531 3_4:-72112943 None:intergenic
AGAACCGACGCGGATATCGA+CGG 0.646947 3_4:+72111397 Msa0519810:CDS
AGGATGAGAATCTTCTAACA+AGG 0.648818 3_4:+72112522 Msa0519810:CDS
CGGTTCTACCAGAAGCGACG+CGG 0.649354 3_4:-72111381 None:intergenic
TGATGACGGTGAGAGACGCG+TGG 0.660150 3_4:-72110948 None:intergenic
CCTATTTGAGAACACCATGT+CGG 0.660812 3_4:+72113601 Msa0519810:CDS
GACACCGTGTGATTAGAGAT+GGG 0.666771 3_4:+72112131 Msa0519810:CDS
CGCTTCTGGTAGAACCGACG+CGG 0.667172 3_4:+72111387 Msa0519810:CDS
GCATTTGTGAGAAATTGCAA+AGG 0.670287 3_4:-72111661 None:intergenic
GTTGGAGAGGACCACTGTGG+AGG 0.676327 3_4:+72112676 Msa0519810:CDS
AAAGCAAGGGTGCACCACCA+AGG 0.677895 3_4:+72114088 Msa0519810:three_prime_UTR
CATCTCTAATCACACGGTGT+CGG 0.680410 3_4:-72112129 None:intergenic
TGTACCCATCTCTAATCACA+CGG 0.680975 3_4:-72112135 None:intergenic
ACATCCCTAACACCAAATGT+CGG 0.680982 3_4:-72111583 None:intergenic
AAACGCTAAACAACTCACAT+GGG 0.684108 3_4:+72111273 Msa0519810:CDS
TGACGGTGAGAGACGCGTGG+AGG 0.700350 3_4:-72110945 None:intergenic
ACCACCGTCGATATCCGCGT+CGG 0.706571 3_4:-72111401 None:intergenic
AAGGCTTTGGAAGAAGCTGG+TGG 0.707444 3_4:+72112650 Msa0519810:CDS
ATGAAAACGAGAAATGATGA+CGG 0.708462 3_4:-72110962 None:intergenic
ATATAACAAACAACCCACGC+AGG 0.712609 3_4:-72113509 None:intergenic
CGGAGGCCGAGATTCCTGCG+TGG 0.712962 3_4:+72113495 Msa0519810:CDS
AGAAACCAAAGCATCAACGA+GGG 0.719081 3_4:+72113738 Msa0519810:CDS
GGTGCGAAAGAAAGTCACAA+AGG 0.727517 3_4:+72111124 Msa0519810:CDS
AAGTCACAAAGGAACACCAG+TGG 0.729436 3_4:+72111135 Msa0519810:CDS
GAGAAACCAAAGCATCAACG+AGG 0.730620 3_4:+72113737 Msa0519810:CDS
TTGGTTGGAGAGGACCACTG+TGG 0.738638 3_4:+72112673 Msa0519810:CDS
ACCGACGCGGATATCGACGG+TGG 0.749510 3_4:+72111400 Msa0519810:CDS
AATGTCCATATCCTCCACAG+TGG 0.778249 3_4:-72112687 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTGTTATGTTTTTTA+AGG + chr3_4:72111952-72111971 Msa0519810:intron 15.0%
!!! AATTGATTGATGATTAATTT+AGG + chr3_4:72112292-72112311 Msa0519810:intron 15.0%
!! AATTAATATTTGATTGGATT+TGG + chr3_4:72112426-72112445 Msa0519810:intron 15.0%
!! ATGAATTAGAAAAAAAAAGA+GGG - chr3_4:72114307-72114326 None:intergenic 15.0%
!! AATGAATTAGAAAAAAAAAG+AGG - chr3_4:72114308-72114327 None:intergenic 15.0%
!!! TTCATTTTTGTAATTTTATG+TGG + chr3_4:72114322-72114341 Msa0519810:three_prime_UTR 15.0%
!!! AATTTTCTTACAAAAAAGAA+TGG - chr3_4:72114366-72114385 None:intergenic 15.0%
!!! TTTTTTTCTGGGTTTTTTTT+GGG - chr3_4:72111054-72111073 None:intergenic 20.0%
!!! ATTTTTTTCTGGGTTTTTTT+TGG - chr3_4:72111055-72111074 None:intergenic 20.0%
!!! AAATCACACAATTTTTTTCT+GGG - chr3_4:72111065-72111084 None:intergenic 20.0%
!!! TAAATCACACAATTTTTTTC+TGG - chr3_4:72111066-72111085 None:intergenic 20.0%
!!! TGAATCAAAAAATTGGATTT+TGG - chr3_4:72112019-72112038 None:intergenic 20.0%
!! TAATCAAAGATTGTGTAATT+GGG - chr3_4:72112063-72112082 None:intergenic 20.0%
!! TTAATCAAAGATTGTGTAAT+TGG - chr3_4:72112064-72112083 None:intergenic 20.0%
!! AATTACACAATCTTTGATTA+AGG + chr3_4:72112063-72112082 Msa0519810:CDS 20.0%
!! AGATAAACAAAACAAACATT+TGG - chr3_4:72112798-72112817 None:intergenic 20.0%
!!! AATGTTTGTTTTGTTTATCT+TGG + chr3_4:72112798-72112817 Msa0519810:intron 20.0%
!! AAACAAAATTTCCATGAAAA+GGG - chr3_4:72113001-72113020 None:intergenic 20.0%
!! ATCGAAATTACCAAAAAAAA+AGG + chr3_4:72113078-72113097 Msa0519810:intron 20.0%
!!! TTTATGTATGCCTTTTTTTT+TGG - chr3_4:72113091-72113110 None:intergenic 20.0%
!!! GTGTTTTGTTAGTAATTTTA+CGG - chr3_4:72113217-72113236 None:intergenic 20.0%
!! ACATAACAAAATGTATTTGA+AGG + chr3_4:72113841-72113860 Msa0519810:CDS 20.0%
!! ACAAAAATAGTAGTAATAAC+TGG + chr3_4:72114017-72114036 Msa0519810:three_prime_UTR 20.0%
!!! ATTGATAAAGAAGATTTTGA+GGG + chr3_4:72114255-72114274 Msa0519810:three_prime_UTR 20.0%
!!! CTTTTTTGTAAGAAAATTTG+CGG + chr3_4:72114368-72114387 Msa0519810:three_prime_UTR 20.0%
! AAAACCTAAATGGAAAAAGT+GGG - chr3_4:72110741-72110760 None:intergenic 25.0%
! AAAAACCTAAATGGAAAAAG+TGG - chr3_4:72110742-72110761 None:intergenic 25.0%
! TAAAAATGGAGAATCCAAAT+TGG + chr3_4:72111161-72111180 Msa0519810:CDS 25.0%
! AAAAATGGAGAATCCAAATT+GGG + chr3_4:72111162-72111181 Msa0519810:CDS 25.0%
! AAAAGTAAATCTTCTTCTGA+AGG - chr3_4:72111208-72111227 None:intergenic 25.0%
!!! TCTCTTGAAGAAGAATTTTT+TGG - chr3_4:72111238-72111257 None:intergenic 25.0%
!!! TTGTTGCTTATTTTAAAGGT+TGG + chr3_4:72111527-72111546 Msa0519810:CDS 25.0%
! TATTCAGAGTATAGATAGAT+TGG + chr3_4:72111702-72111721 Msa0519810:CDS 25.0%
!!! TTCTTTGTTTAGGATGTTTT+TGG + chr3_4:72111725-72111744 Msa0519810:CDS 25.0%
! AAAATTAAACCTGTTCCAAA+AGG + chr3_4:72111760-72111779 Msa0519810:CDS 25.0%
! CAGAACTTGAATCAAAAAAT+TGG - chr3_4:72112026-72112045 None:intergenic 25.0%
!!! CAATTTTTTGATTCAAGTTC+TGG + chr3_4:72112024-72112043 Msa0519810:CDS 25.0%
! TTTAGTAGTACCTTAAAATG+AGG - chr3_4:72112274-72112293 None:intergenic 25.0%
!! AGTGTTTTCCTTAATTTCTT+TGG + chr3_4:72112596-72112615 Msa0519810:CDS 25.0%
!! GTGTTTTCCTTAATTTCTTT+GGG + chr3_4:72112597-72112616 Msa0519810:CDS 25.0%
! CAAACAAAATTTCCATGAAA+AGG - chr3_4:72113002-72113021 None:intergenic 25.0%
!!! TTTTGTTTGAGACATCATTT+TGG + chr3_4:72113013-72113032 Msa0519810:intron 25.0%
! TGTTTCTTTAATCTAGACTA+CGG + chr3_4:72113247-72113266 Msa0519810:intron 25.0%
! TACACGATGAATTATATACA+TGG + chr3_4:72114063-72114082 Msa0519810:three_prime_UTR 25.0%
! TTATATACATGGAAAAAGCA+AGG + chr3_4:72114074-72114093 Msa0519810:three_prime_UTR 25.0%
! TATATACATGGAAAAAGCAA+GGG + chr3_4:72114075-72114094 Msa0519810:three_prime_UTR 25.0%
!! GATTGATAAAGAAGATTTTG+AGG + chr3_4:72114254-72114273 Msa0519810:three_prime_UTR 25.0%
!! GTTCAAAACTTTTTATTGTC+AGG + chr3_4:72114390-72114409 Msa0519810:three_prime_UTR 25.0%
!!! ACCACTTTTTTTGTGTTTGA+CGG + chr3_4:72110605-72110624 Msa0519810:five_prime_UTR 30.0%
GAAAAAGTGGGTAACATAAA+GGG - chr3_4:72110729-72110748 None:intergenic 30.0%
TCCAAAACTTACAACAAAAC+GGG - chr3_4:72110770-72110789 None:intergenic 30.0%
GTCCAAAACTTACAACAAAA+CGG - chr3_4:72110771-72110790 None:intergenic 30.0%
ATGTTATGTTATGACCTGTT+TGG - chr3_4:72110798-72110817 None:intergenic 30.0%
CGAAAAACAATTGTGACATT+CGG - chr3_4:72110905-72110924 None:intergenic 30.0%
ATGAAAACGAGAAATGATGA+CGG - chr3_4:72110965-72110984 None:intergenic 30.0%
TACAAGATCAGAGACAAAAA+TGG + chr3_4:72111084-72111103 Msa0519810:exon 30.0%
AATTCTTCTTCAAGAGACAA+AGG + chr3_4:72111241-72111260 Msa0519810:CDS 30.0%
TAGGTTCTATACATTCATCA+AGG + chr3_4:72111465-72111484 Msa0519810:CDS 30.0%
!!! GAGGTTGTTGCTTATTTTAA+AGG + chr3_4:72111523-72111542 Msa0519810:CDS 30.0%
!!! TTGATTGGTTTTATGCTAGA+TGG + chr3_4:72111608-72111627 Msa0519810:CDS 30.0%
!!! TGATTGGTTTTATGCTAGAT+GGG + chr3_4:72111609-72111628 Msa0519810:CDS 30.0%
! GATAGATTGGTTCTTTGTTT+AGG + chr3_4:72111715-72111734 Msa0519810:CDS 30.0%
TACACAATCTTTGATTAAGG+AGG + chr3_4:72112066-72112085 Msa0519810:CDS 30.0%
TTTCACATAGCTACAATTCA+TGG - chr3_4:72112182-72112201 None:intergenic 30.0%
! AGTTTTCTTAAGGAAATCAG+GGG - chr3_4:72112248-72112267 None:intergenic 30.0%
! CAGTTTTCTTAAGGAAATCA+GGG - chr3_4:72112249-72112268 None:intergenic 30.0%
! ACAGTTTTCTTAAGGAAATC+AGG - chr3_4:72112250-72112269 None:intergenic 30.0%
! AATGAGGAACAGTTTTCTTA+AGG - chr3_4:72112258-72112277 None:intergenic 30.0%
! GAAAACTGTTCCTCATTTTA+AGG + chr3_4:72112261-72112280 Msa0519810:CDS 30.0%
CATTGAACCCAAAGAAATTA+AGG - chr3_4:72112607-72112626 None:intergenic 30.0%
! CTTAATTTCTTTGGGTTCAA+TGG + chr3_4:72112605-72112624 Msa0519810:CDS 30.0%
! ATTCATTTTCCTCAATGATG+TGG + chr3_4:72112739-72112758 Msa0519810:CDS 30.0%
TATGTGTATCTCAATTCTCA+AGG + chr3_4:72112975-72112994 Msa0519810:intron 30.0%
TGTTACAGTTGTGCTTATTA+TGG + chr3_4:72113324-72113343 Msa0519810:intron 30.0%
! GTTGTGCTTATTATGGATTA+TGG + chr3_4:72113331-72113350 Msa0519810:intron 30.0%
! CTTTTTCCTTCTTAGAAAGT+TGG + chr3_4:72113412-72113431 Msa0519810:CDS 30.0%
AATAGAGTGAACGAGTAAAA+TGG - chr3_4:72113443-72113462 None:intergenic 30.0%
! ACTATGAAAGGAAAAGCTTT+TGG - chr3_4:72113572-72113591 None:intergenic 30.0%
! ATTGAATTTTGTAACCGACA+TGG - chr3_4:72113618-72113637 None:intergenic 30.0%
AAATTCAATGCTATGATCTC+AGG + chr3_4:72113629-72113648 Msa0519810:CDS 30.0%
AAGAAATGAAAGAGGAAATC+AGG + chr3_4:72113780-72113799 Msa0519810:CDS 30.0%
TGGAGACAACAATTTATTTG+AGG + chr3_4:72114129-72114148 Msa0519810:three_prime_UTR 30.0%
GGAGACAACAATTTATTTGA+GGG + chr3_4:72114130-72114149 Msa0519810:three_prime_UTR 30.0%
GTTGAATTGAATTTAGTAGC+TGG - chr3_4:72114194-72114213 None:intergenic 30.0%
! CATTCTGTTATTTGTCATCA+TGG + chr3_4:72114232-72114251 Msa0519810:three_prime_UTR 30.0%
! ATGTGGATTCTTTTTCTCAA+TGG + chr3_4:72114339-72114358 Msa0519810:three_prime_UTR 30.0%
! AACTTTTTATTGTCAGGAAC+AGG + chr3_4:72114396-72114415 Msa0519810:three_prime_UTR 30.0%
GAAAAAATAGAAACAGGATG+AGG - chr3_4:72114442-72114461 None:intergenic 30.0%
GTTGGAGAAAAAATAGAAAC+AGG - chr3_4:72114448-72114467 None:intergenic 30.0%
TCCGTCAAACACAAAAAAAG+TGG - chr3_4:72110609-72110628 None:intergenic 35.0%
GCACGTTTATGTCTTTGATT+CGG - chr3_4:72110696-72110715 None:intergenic 35.0%
GGAAAAAGTGGGTAACATAA+AGG - chr3_4:72110730-72110749 None:intergenic 35.0%
!!! GTTACCCACTTTTTCCATTT+AGG + chr3_4:72110734-72110753 Msa0519810:five_prime_UTR 35.0%
CCAAAACTTACAACAAAACG+GGG - chr3_4:72110769-72110788 None:intergenic 35.0%
AAATGGCACCTTTGTTCAAT+TGG + chr3_4:72111101-72111120 Msa0519810:exon 35.0%
AATGGCACCTTTGTTCAATT+GGG + chr3_4:72111102-72111121 Msa0519810:exon 35.0%
AACACCAGTGGTTGTAAAAA+TGG + chr3_4:72111147-72111166 Msa0519810:CDS 35.0%
!! TTCTCCATTTTTACAACCAC+TGG - chr3_4:72111154-72111173 None:intergenic 35.0%
AGTTCATCAATGTCCCAATT+TGG - chr3_4:72111178-72111197 None:intergenic 35.0%
TCTTCAAGAGACAAAGGAAA+AGG + chr3_4:72111247-72111266 Msa0519810:CDS 35.0%
AAAACGCTAAACAACTCACA+TGG + chr3_4:72111272-72111291 Msa0519810:CDS 35.0%
AAACGCTAAACAACTCACAT+GGG + chr3_4:72111273-72111292 Msa0519810:CDS 35.0%
GAAACTAAACCAAACAATGC+AGG - chr3_4:72111349-72111368 None:intergenic 35.0%
!! AGAACCTACTTTTCACTGTA+GGG - chr3_4:72111453-72111472 None:intergenic 35.0%
!! TAGAACCTACTTTTCACTGT+AGG - chr3_4:72111454-72111473 None:intergenic 35.0%
! CAAGGTGTTTCTATGTTTGT+CGG + chr3_4:72111483-72111502 Msa0519810:CDS 35.0%
!! GGTGTTTTTGTTGTGTTTTG+AGG + chr3_4:72111504-72111523 Msa0519810:CDS 35.0%
!! GTGTTAGGGATGTTTTTGAT+TGG + chr3_4:72111593-72111612 Msa0519810:CDS 35.0%
TTTGTGAGAAATTGCAAAGG+AGG - chr3_4:72111661-72111680 None:intergenic 35.0%
GCATTTGTGAGAAATTGCAA+AGG - chr3_4:72111664-72111683 None:intergenic 35.0%
ATTAAACCTGTTCCAAAAGG+TGG + chr3_4:72111763-72111782 Msa0519810:CDS 35.0%
GATGTTTCAGATCTTGAATC+TGG + chr3_4:72111787-72111806 Msa0519810:CDS 35.0%
AGATCTTGAATCTGGAGATA+AGG + chr3_4:72111795-72111814 Msa0519810:CDS 35.0%
GATCTTGAATCTGGAGATAA+GGG + chr3_4:72111796-72111815 Msa0519810:CDS 35.0%
TATTGCAGCAGTGTGTAATT+TGG + chr3_4:72111988-72112007 Msa0519810:CDS 35.0%
ACAATCTTTGATTAAGGAGG+AGG + chr3_4:72112069-72112088 Msa0519810:CDS 35.0%
TTAAGGAGGAGGTTCATAAA+TGG + chr3_4:72112080-72112099 Msa0519810:CDS 35.0%
GTTCATAAATGGCAAGAAGA+AGG + chr3_4:72112091-72112110 Msa0519810:CDS 35.0%
CGTGTAGCTTCAAGAAATTA+TGG + chr3_4:72112366-72112385 Msa0519810:intron 35.0%
GTAGCTTCAAGAAATTATGG+TGG + chr3_4:72112369-72112388 Msa0519810:intron 35.0%
! GGTGGATGTGTCATATATTT+TGG + chr3_4:72112387-72112406 Msa0519810:intron 35.0%
CTACAGGATAATGACGAATT+AGG + chr3_4:72112467-72112486 Msa0519810:intron 35.0%
! TAGATGGTCTTTTGTGAACA+AGG + chr3_4:72112502-72112521 Msa0519810:CDS 35.0%
AGGATGAGAATCTTCTAACA+AGG + chr3_4:72112522-72112541 Msa0519810:CDS 35.0%
!! TCTGTGTTTCCATTTTGAAG+TGG + chr3_4:72112559-72112578 Msa0519810:CDS 35.0%
!! CTTGTTGTTCCACTTCAAAA+TGG - chr3_4:72112571-72112590 None:intergenic 35.0%
AGTTTGGAGAATAAAGGCTT+TGG + chr3_4:72112637-72112656 Msa0519810:CDS 35.0%
CACTGGAAACATTAACAACT+TGG - chr3_4:72112842-72112861 None:intergenic 35.0%
AAGATTCAGGTAACTCACAT+TGG - chr3_4:72112865-72112884 None:intergenic 35.0%
TTATGACATCAGGCAAACAA+AGG - chr3_4:72112946-72112965 None:intergenic 35.0%
TTGTTTGCCTGATGTCATAA+AGG + chr3_4:72112946-72112965 Msa0519810:CDS 35.0%
GAATTGAGATACACATACCT+TGG - chr3_4:72112972-72112991 None:intergenic 35.0%
AAATGTGTGAGACGTTGTTA+CGG + chr3_4:72113041-72113060 Msa0519810:intron 35.0%
TGGTAATTTCGATGCATTCA+GGG - chr3_4:72113071-72113090 None:intergenic 35.0%
! TTGGTAATTTCGATGCATTC+AGG - chr3_4:72113072-72113091 None:intergenic 35.0%
!!! GTTAGTTTGTCACGTTGTTT+TGG + chr3_4:72113121-72113140 Msa0519810:intron 35.0%
CTTTCTTGCAGATAAGCATA+TGG + chr3_4:72113366-72113385 Msa0519810:intron 35.0%
GTGTTCTCAAATAGGAGATA+CGG - chr3_4:72113596-72113615 None:intergenic 35.0%
TCTTTCATTTCTTCCAGATC+AGG - chr3_4:72113773-72113792 None:intergenic 35.0%
TGATCTGGAAGAAATGAAAG+AGG + chr3_4:72113772-72113791 Msa0519810:CDS 35.0%
! GTATTTGAAGGAACTTGCTT+TGG + chr3_4:72113853-72113872 Msa0519810:CDS 35.0%
! TACTTTTAACAGCTTCAGCA+AGG + chr3_4:72113882-72113901 Msa0519810:CDS 35.0%
!! TTCTACTTCTTGCTATTCCA+AGG + chr3_4:72113932-72113951 Msa0519810:CDS 35.0%
CCAAAAAGAAAGATACTCCT+TGG - chr3_4:72113952-72113971 None:intergenic 35.0%
!!! CCAAGGAGTATCTTTCTTTT+TGG + chr3_4:72113949-72113968 Msa0519810:CDS 35.0%
!! GGAGTATCTTTCTTTTTGGT+TGG + chr3_4:72113953-72113972 Msa0519810:CDS 35.0%
!! TTGGTTGGTCTAGACTTAAT+TGG + chr3_4:72113968-72113987 Msa0519810:CDS 35.0%
GTGAACAAGTAGACTGAAAA+AGG + chr3_4:72113990-72114009 Msa0519810:exon 35.0%
TGATTCTATTCATAGAGCCT+TGG - chr3_4:72114108-72114127 None:intergenic 35.0%
CGGGGTTTCAAAAACCTAAA+TGG - chr3_4:72110751-72110770 None:intergenic 40.0%
!! CCCCGTTTTGTTGTAAGTTT+TGG + chr3_4:72110766-72110785 Msa0519810:five_prime_UTR 40.0%
!!! AGTTTTGGACACATCCAAAC+AGG + chr3_4:72110781-72110800 Msa0519810:five_prime_UTR 40.0%
ATGGCACCTTTGTTCAATTG+GGG + chr3_4:72111103-72111122 Msa0519810:CDS 40.0%
TGGGACATTGATGAACTTGA+AGG + chr3_4:72111181-72111200 Msa0519810:CDS 40.0%
CAAATTGCTCCTGCATTGTT+TGG + chr3_4:72111337-72111356 Msa0519810:CDS 40.0%
AGAACCCTACAGTGAAAAGT+AGG + chr3_4:72111446-72111465 Msa0519810:CDS 40.0%
TGCTCCACATCTTGAATTGT+GGG + chr3_4:72111558-72111577 Msa0519810:CDS 40.0%
ACATCCCTAACACCAAATGT+CGG - chr3_4:72111586-72111605 None:intergenic 40.0%
!! TCTGAAACATCACCACCTTT+TGG - chr3_4:72111778-72111797 None:intergenic 40.0%
AGATAAGGGTTTCTTCCCTA+TGG + chr3_4:72111810-72111829 Msa0519810:CDS 40.0%
GGATCTGAACAAGAACCATA+GGG - chr3_4:72111828-72111847 None:intergenic 40.0%
ACCTCTTTCTCATTGCACAT+GGG - chr3_4:72111850-72111869 None:intergenic 40.0%
TACCTCTTTCTCATTGCACA+TGG - chr3_4:72111851-72111870 None:intergenic 40.0%
CAGCAGTGTGTAATTTGGAT+TGG + chr3_4:72111993-72112012 Msa0519810:CDS 40.0%
TGTACCCATCTCTAATCACA+CGG - chr3_4:72112138-72112157 None:intergenic 40.0%
ATTAGAGATGGGTACAAAGC+TGG + chr3_4:72112142-72112161 Msa0519810:CDS 40.0%
TTCTTAAGGAAATCAGGGGT+AGG - chr3_4:72112244-72112263 None:intergenic 40.0%
TGATTGGATTTGGATCCACT+TGG + chr3_4:72112436-72112455 Msa0519810:intron 40.0%
TGCTGGAGTTTGGAGAATAA+AGG + chr3_4:72112631-72112650 Msa0519810:CDS 40.0%
!! ATAAAGGCTTTGGAAGAAGC+TGG + chr3_4:72112647-72112666 Msa0519810:CDS 40.0%
! CATTTTCCTCAATGATGTGG+AGG + chr3_4:72112742-72112761 Msa0519810:CDS 40.0%
CTGTAAGCTTCGTAAGATTC+AGG - chr3_4:72112878-72112897 None:intergenic 40.0%
ACAGAAAACAGCAGCATAGA+TGG + chr3_4:72112894-72112913 Msa0519810:CDS 40.0%
CAAAGGCGAAACAATTGCAT+TGG - chr3_4:72112929-72112948 None:intergenic 40.0%
! AATTCTCAAGGCCCTTTTCA+TGG + chr3_4:72112987-72113006 Msa0519810:intron 40.0%
ACAACGTGACAAACTAACGA+AGG - chr3_4:72113119-72113138 None:intergenic 40.0%
! GCAACACCAACTTTCTAAGA+AGG - chr3_4:72113421-72113440 None:intergenic 40.0%
ATATAACAAACAACCCACGC+AGG - chr3_4:72113512-72113531 None:intergenic 40.0%
TGAGAAATGACATGACTGCT+GGG - chr3_4:72113535-72113554 None:intergenic 40.0%
TTGAGAAATGACATGACTGC+TGG - chr3_4:72113536-72113555 None:intergenic 40.0%
!!! AAAGGAAAAGCTTTTGGAGC+TGG - chr3_4:72113566-72113585 None:intergenic 40.0%
AGGAGATACGGTACTATGAA+AGG - chr3_4:72113584-72113603 None:intergenic 40.0%
CCTATTTGAGAACACCATGT+CGG + chr3_4:72113601-72113620 Msa0519810:CDS 40.0%
! AGAAACCAAAGCATCAACGA+GGG + chr3_4:72113738-72113757 Msa0519810:CDS 40.0%
TTCTATTCATAGAGCCTTGG+TGG - chr3_4:72114105-72114124 None:intergenic 40.0%
GGCTCTATGAATAGAATCAC+TGG + chr3_4:72114109-72114128 Msa0519810:three_prime_UTR 40.0%
TGAATTTAGTAGCTGGAGTG+AGG - chr3_4:72114187-72114206 None:intergenic 40.0%
ATAGAAACAGGATGAGGTCA+AGG - chr3_4:72114436-72114455 None:intergenic 40.0%
TTTCTCCAACGCTTTGTATG+AGG + chr3_4:72114458-72114477 Msa0519810:three_prime_UTR 40.0%
!! TGACGGAGAAACTGCTTTTC+TGG + chr3_4:72110622-72110641 Msa0519810:five_prime_UTR 45.0%
!! GACGGAGAAACTGCTTTTCT+GGG + chr3_4:72110623-72110642 Msa0519810:five_prime_UTR 45.0%
!! ACGGAGAAACTGCTTTTCTG+GGG + chr3_4:72110624-72110643 Msa0519810:five_prime_UTR 45.0%
TTCGCACCCCAATTGAACAA+AGG - chr3_4:72111112-72111131 None:intergenic 45.0%
GGTGCGAAAGAAAGTCACAA+AGG + chr3_4:72111124-72111143 Msa0519810:CDS 45.0%
AAGTCACAAAGGAACACCAG+TGG + chr3_4:72111135-72111154 Msa0519810:CDS 45.0%
CAGCAGCTCTATGAGCTTTA+AGG - chr3_4:72111306-72111325 None:intergenic 45.0%
CTTAAAGCTCATAGAGCTGC+TGG + chr3_4:72111304-72111323 Msa0519810:CDS 45.0%
GTGCTCCACATCTTGAATTG+TGG + chr3_4:72111557-72111576 Msa0519810:CDS 45.0%
!!! ACATCACCACCTTTTGGAAC+AGG - chr3_4:72111772-72111791 None:intergenic 45.0%
GGGATCTGAACAAGAACCAT+AGG - chr3_4:72111829-72111848 None:intergenic 45.0%
CCTCTTTCTCATTGCACATG+GGG - chr3_4:72111849-72111868 None:intergenic 45.0%
!! ACGGTGTCGGTACAAAATGT+TGG - chr3_4:72112119-72112138 None:intergenic 45.0%
CATCTCTAATCACACGGTGT+CGG - chr3_4:72112132-72112151 None:intergenic 45.0%
GACACCGTGTGATTAGAGAT+GGG + chr3_4:72112131-72112150 Msa0519810:CDS 45.0%
ATCAGGGGTAGGCTGAAAAT+CGG - chr3_4:72112233-72112252 None:intergenic 45.0%
TAGGACTTGTGCAAGCTAGA+TGG + chr3_4:72112486-72112505 Msa0519810:CDS 45.0%
! TTTGGGTTCAATGGTACTGC+TGG + chr3_4:72112614-72112633 Msa0519810:CDS 45.0%
TCAATGGTACTGCTGGAGTT+TGG + chr3_4:72112621-72112640 Msa0519810:CDS 45.0%
AATGTCCATATCCTCCACAG+TGG - chr3_4:72112690-72112709 None:intergenic 45.0%
TTCGAGCTCATCTTCATGGA+TGG + chr3_4:72112714-72112733 Msa0519810:CDS 45.0%
! ACCTTGGCCTTTATGACATC+AGG - chr3_4:72112956-72112975 None:intergenic 45.0%
TCCCATGACAATGTTCGTAC+CGG + chr3_4:72113475-72113494 Msa0519810:CDS 45.0%
TCCGGTACGAACATTGTCAT+GGG - chr3_4:72113479-72113498 None:intergenic 45.0%
CCGACATGGTGTTCTCAAAT+AGG - chr3_4:72113604-72113623 None:intergenic 45.0%
TGGGTAGTCACTAAGAAGTC+CGG + chr3_4:72113680-72113699 Msa0519810:CDS 45.0%
TAAGAAGTCCGGTCGTTCAT+CGG + chr3_4:72113691-72113710 Msa0519810:CDS 45.0%
! GAGAAACCAAAGCATCAACG+AGG + chr3_4:72113737-72113756 Msa0519810:CDS 45.0%
AGAGGAAATCAGGAGACAAG+AGG + chr3_4:72113790-72113809 Msa0519810:CDS 45.0%
AGGAGTCTACTTTCAGCTCA+AGG + chr3_4:72113902-72113921 Msa0519810:CDS 45.0%
GGAGTCTACTTTCAGCTCAA+GGG + chr3_4:72113903-72113922 Msa0519810:CDS 45.0%
CATTGCCTCATACAAAGCGT+TGG - chr3_4:72114466-72114485 None:intergenic 45.0%
!! ATAATTAATTAATATTTGAT+TGG + chr3_4:72112420-72112439 Msa0519810:intron 5.0%
GGTGCCCACAATTCAAGATG+TGG - chr3_4:72111565-72111584 None:intergenic 50.0%
!! GAATTGTGGGCACCGACATT+TGG + chr3_4:72111571-72111590 Msa0519810:CDS 50.0%
!! GGCACCGACATTTGGTGTTA+GGG + chr3_4:72111579-72111598 Msa0519810:CDS 50.0%
CCCCATGTGCAATGAGAAAG+AGG + chr3_4:72111846-72111865 Msa0519810:CDS 50.0%
CGACACCGTGTGATTAGAGA+TGG + chr3_4:72112130-72112149 Msa0519810:CDS 50.0%
CCTGTAGCATCATCACCAAG+TGG - chr3_4:72112454-72112473 None:intergenic 50.0%
!! CCACTTGGTGATGATGCTAC+AGG + chr3_4:72112451-72112470 Msa0519810:intron 50.0%
!! AAGGCTTTGGAAGAAGCTGG+TGG + chr3_4:72112650-72112669 Msa0519810:CDS 50.0%
! CTTTGGAAGAAGCTGGTGGT+TGG + chr3_4:72112654-72112673 Msa0519810:CDS 50.0%
GCTGTTCGAGCTCATCTTCA+TGG + chr3_4:72112710-72112729 Msa0519810:CDS 50.0%
GCAGTACCTCCACATCATTG+AGG - chr3_4:72112751-72112770 None:intergenic 50.0%
CAGGTAACTCACATTGGCAC+TGG - chr3_4:72112859-72112878 None:intergenic 50.0%
CAGCAGCATAGATGGCATTC+TGG + chr3_4:72112902-72112921 Msa0519810:CDS 50.0%
GCCTGATGTCATAAAGGCCA+AGG + chr3_4:72112952-72112971 Msa0519810:CDS 50.0%
CTCCGGTACGAACATTGTCA+TGG - chr3_4:72113480-72113499 None:intergenic 50.0%
CATGACAATGTTCGTACCGG+AGG + chr3_4:72113478-72113497 Msa0519810:CDS 50.0%
AACAACCCACGCAGGAATCT+CGG - chr3_4:72113504-72113523 None:intergenic 50.0%
ATCTCAGGCCTATTCCAGCT+AGG + chr3_4:72113644-72113663 Msa0519810:CDS 50.0%
ACGCACTTCCTAGCTGGAAT+AGG - chr3_4:72113655-72113674 None:intergenic 50.0%
ATTCGTACGCACTTCCTAGC+TGG - chr3_4:72113661-72113680 None:intergenic 50.0%
! AGCTAGGAAGTGCGTACGAA+TGG + chr3_4:72113660-72113679 Msa0519810:CDS 50.0%
! GCTAGGAAGTGCGTACGAAT+GGG + chr3_4:72113661-72113680 Msa0519810:CDS 50.0%
GATGACCCTCGTTGATGCTT+TGG - chr3_4:72113746-72113765 None:intergenic 50.0%
AGAACCGACGCGGATATCGA+CGG + chr3_4:72111397-72111416 Msa0519810:CDS 55.0%
! GATATCGACGGTGGTGTTGG+TGG + chr3_4:72111409-72111428 Msa0519810:CDS 55.0%
!! GGGCACCGACATTTGGTGTT+AGG + chr3_4:72111578-72111597 Msa0519810:CDS 55.0%
GGAAGAAGCTGGTGGTTGGT+TGG + chr3_4:72112658-72112677 Msa0519810:CDS 55.0%
! AAGCTGGTGGTTGGTTGGAG+AGG + chr3_4:72112663-72112682 Msa0519810:CDS 55.0%
TTGGTTGGAGAGGACCACTG+TGG + chr3_4:72112673-72112692 Msa0519810:CDS 55.0%
GAGGACCACTGTGGAGGATA+TGG + chr3_4:72112682-72112701 Msa0519810:CDS 55.0%
AAGTCCGGTCGTTCATCGGA+GGG + chr3_4:72113695-72113714 Msa0519810:CDS 55.0%
ATCACCCTCCGATGAACGAC+CGG - chr3_4:72113702-72113721 None:intergenic 55.0%
AGGGTCATCAGCACCTGATC+TGG + chr3_4:72113757-72113776 Msa0519810:CDS 55.0%
! AAAGCAAGGGTGCACCACCA+AGG + chr3_4:72114088-72114107 Msa0519810:three_prime_UTR 55.0%
!! TGATGACGGTGAGAGACGCG+TGG - chr3_4:72110951-72110970 None:intergenic 60.0%
AGAAGCGACGCGGCGTTTGA+CGG - chr3_4:72111374-72111393 None:intergenic 60.0%
CGGTTCTACCAGAAGCGACG+CGG - chr3_4:72111384-72111403 None:intergenic 60.0%
CGCTTCTGGTAGAACCGACG+CGG + chr3_4:72111387-72111406 Msa0519810:CDS 60.0%
ACCACCGTCGATATCCGCGT+CGG - chr3_4:72111404-72111423 None:intergenic 60.0%
GCGGATATCGACGGTGGTGT+TGG + chr3_4:72111406-72111425 Msa0519810:CDS 60.0%
!! ATCGACGGTGGTGTTGGTGG+TGG + chr3_4:72111412-72111431 Msa0519810:CDS 60.0%
!! ACGGTGGTGTTGGTGGTGGT+AGG + chr3_4:72111416-72111435 Msa0519810:CDS 60.0%
!! CGGTGGTGTTGGTGGTGGTA+GGG + chr3_4:72111417-72111436 Msa0519810:CDS 60.0%
GTTGGAGAGGACCACTGTGG+AGG + chr3_4:72112676-72112695 Msa0519810:CDS 60.0%
GAAGTCCGGTCGTTCATCGG+AGG + chr3_4:72113694-72113713 Msa0519810:CDS 60.0%
TGACGGTGAGAGACGCGTGG+AGG - chr3_4:72110948-72110967 None:intergenic 65.0%
GTCAAACGCCGCGTCGCTTC+TGG + chr3_4:72111373-72111392 Msa0519810:CDS 65.0%
ACCGACGCGGATATCGACGG+TGG + chr3_4:72111400-72111419 Msa0519810:CDS 65.0%
CACGCAGGAATCTCGGCCTC+CGG - chr3_4:72113497-72113516 None:intergenic 65.0%
GGAGGCCGAGATTCCTGCGT+GGG + chr3_4:72113496-72113515 Msa0519810:CDS 65.0%
AGCGACGCGGCGTTTGACGG+CGG - chr3_4:72111371-72111390 None:intergenic 70.0%
CGGAGGCCGAGATTCCTGCG+TGG + chr3_4:72113495-72113514 Msa0519810:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 72110595 72114515 72110595 ID=Msa0519810;Name=Msa0519810
chr3_4 mRNA 72110595 72114515 72110595 ID=Msa0519810-mRNA-1;Parent=Msa0519810;Name=Msa0519810-mRNA-1;_AED=0.07;_eAED=0.07;_QI=508|1|1|1|1|1|5|509|702
chr3_4 exon 72110595 72111867 72110595 ID=Msa0519810-mRNA-1:exon:19841;Parent=Msa0519810-mRNA-1
chr3_4 exon 72111974 72112282 72111974 ID=Msa0519810-mRNA-1:exon:19842;Parent=Msa0519810-mRNA-1
chr3_4 exon 72112473 72112763 72112473 ID=Msa0519810-mRNA-1:exon:19843;Parent=Msa0519810-mRNA-1
chr3_4 exon 72112860 72112973 72112860 ID=Msa0519810-mRNA-1:exon:19844;Parent=Msa0519810-mRNA-1
chr3_4 exon 72113377 72114515 72113377 ID=Msa0519810-mRNA-1:exon:19845;Parent=Msa0519810-mRNA-1
chr3_4 five_prime_UTR 72110595 72111102 72110595 ID=Msa0519810-mRNA-1:five_prime_utr;Parent=Msa0519810-mRNA-1
chr3_4 CDS 72111103 72111867 72111103 ID=Msa0519810-mRNA-1:cds;Parent=Msa0519810-mRNA-1
chr3_4 CDS 72111974 72112282 72111974 ID=Msa0519810-mRNA-1:cds;Parent=Msa0519810-mRNA-1
chr3_4 CDS 72112473 72112763 72112473 ID=Msa0519810-mRNA-1:cds;Parent=Msa0519810-mRNA-1
chr3_4 CDS 72112860 72112973 72112860 ID=Msa0519810-mRNA-1:cds;Parent=Msa0519810-mRNA-1
chr3_4 CDS 72113377 72114006 72113377 ID=Msa0519810-mRNA-1:cds;Parent=Msa0519810-mRNA-1
chr3_4 three_prime_UTR 72114007 72114515 72114007 ID=Msa0519810-mRNA-1:three_prime_utr;Parent=Msa0519810-mRNA-1
Gene Sequence

>Msa0519810

ATGGCACCTTTGTTCAATTGGGGTGCGAAAGAAAGTCACAAAGGAACACCAGTGGTTGTAAAAATGGAGAATCCAAATTGGGACATTGATGAACTTGAAGGTCCTTCAGAAGAAGATTTACTTTTAACAACACCAAAAAATTCTTCTTCAAGAGACAAAGGAAAAGGCAAAAACGCTAAACAACTCACATGGGTTCTTCTCCTTAAAGCTCATAGAGCTGCTGGTTGTTTAGCTCAAATTGCTCCTGCATTGTTTGGTTTAGTTTCCGCCGTCAAACGCCGCGTCGCTTCTGGTAGAACCGACGCGGATATCGACGGTGGTGTTGGTGGTGGTAGGGAAAAAGAGAACCCTACAGTGAAAAGTAGGTTCTATACATTCATCAAGGTGTTTCTATGTTTGTCGGTGTTTTTGTTGTGTTTTGAGGTTGTTGCTTATTTTAAAGGTTGGCATTTTAGTGCTCCACATCTTGAATTGTGGGCACCGACATTTGGTGTTAGGGATGTTTTTGATTGGTTTTATGCTAGATGGGTTTTGATTCGTGTTGAGTATCTTGCTCCTCCTTTGCAATTTCTCACAAATGCTTGTATTGTTCTCTTTCTTATTCAGAGTATAGATAGATTGGTTCTTTGTTTAGGATGTTTTTGGATCAAGTTTAAGAAAATTAAACCTGTTCCAAAAGGTGGTGATGTTTCAGATCTTGAATCTGGAGATAAGGGTTTCTTCCCTATGGTTCTTGTTCAGATCCCCATGTGCAATGAGAAAGAGGTTTATCAGCAATCTATTGCAGCAGTGTGTAATTTGGATTGGCCAAAATCCAATTTTTTGATTCAAGTTCTGGATGATTCTGATGACCCAATTACACAATCTTTGATTAAGGAGGAGGTTCATAAATGGCAAGAAGAAGGTGCCAACATTTTGTACCGACACCGTGTGATTAGAGATGGGTACAAAGCTGGTAATCTCAAATCAGCCATGAATTGTAGCTATGTGAAAGATTATGAATTTGTTACAATTTTCGATGCCGATTTTCAGCCTACCCCTGATTTCCTTAAGAAAACTGTTCCTCATTTTAAGGATAATGACGAATTAGGACTTGTGCAAGCTAGATGGTCTTTTGTGAACAAGGATGAGAATCTTCTAACAAGGTTGCAGAATATTAATCTGTGTTTCCATTTTGAAGTGGAACAACAAGTGAATAGTGTTTTCCTTAATTTCTTTGGGTTCAATGGTACTGCTGGAGTTTGGAGAATAAAGGCTTTGGAAGAAGCTGGTGGTTGGTTGGAGAGGACCACTGTGGAGGATATGGACATTGCTGTTCGAGCTCATCTTCATGGATGGAAATTCATTTTCCTCAATGATGTGGAGTGCCAATGTGAGTTACCTGAATCTTACGAAGCTTACAGAAAACAGCAGCATAGATGGCATTCTGGTCCAATGCAATTGTTTCGCCTTTGTTTGCCTGATGTCATAAAGGCCAAGATAAGCATATGGAAGAAGTTCAACATGATATTTCTCTTTTTCCTTCTTAGAAAGTTGGTGTTGCCATTTTACTCGTTCACTCTATTCTGTATAATACTTCCCATGACAATGTTCGTACCGGAGGCCGAGATTCCTGCGTGGGTTGTTTGTTATATCCCAGCAGTCATGTCATTTCTCAACATTCTTCCAGCTCCAAAAGCTTTTCCTTTCATAGTACCGTATCTCCTATTTGAGAACACCATGTCGGTTACAAAATTCAATGCTATGATCTCAGGCCTATTCCAGCTAGGAAGTGCGTACGAATGGGTAGTCACTAAGAAGTCCGGTCGTTCATCGGAGGGTGATCTAGTTTCATTGATTGAGAAACCAAAGCATCAACGAGGGTCATCAGCACCTGATCTGGAAGAAATGAAAGAGGAAATCAGGAGACAAGAGGAAAATGTGTCTAAGAAGAAGAAGAAGAAACATAACAAAATGTATTTGAAGGAACTTGCTTTGGCTTTTTTACTTTTAACAGCTTCAGCAAGGAGTCTACTTTCAGCTCAAGGGATTCACTTCTACTTCTTGCTATTCCAAGGAGTATCTTTCTTTTTGGTTGGTCTAGACTTAATTGGTGAACAAGTAGACTGA

Protein sequence

>Msa0519810

MAPLFNWGAKESHKGTPVVVKMENPNWDIDELEGPSEEDLLLTTPKNSSSRDKGKGKNAKQLTWVLLLKAHRAAGCLAQIAPALFGLVSAVKRRVASGRTDADIDGGVGGGREKENPTVKSRFYTFIKVFLCLSVFLLCFEVVAYFKGWHFSAPHLELWAPTFGVRDVFDWFYARWVLIRVEYLAPPLQFLTNACIVLFLIQSIDRLVLCLGCFWIKFKKIKPVPKGGDVSDLESGDKGFFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSNFLIQVLDDSDDPITQSLIKEEVHKWQEEGANILYRHRVIRDGYKAGNLKSAMNCSYVKDYEFVTIFDADFQPTPDFLKKTVPHFKDNDELGLVQARWSFVNKDENLLTRLQNINLCFHFEVEQQVNSVFLNFFGFNGTAGVWRIKALEEAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDVIKAKISIWKKFNMIFLFFLLRKLVLPFYSFTLFCIILPMTMFVPEAEIPAWVVCYIPAVMSFLNILPAPKAFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVSLIEKPKHQRGSSAPDLEEMKEEIRRQEENVSKKKKKKHNKMYLKELALAFLLLTASARSLLSAQGIHFYFLLFQGVSFFLVGLDLIGEQVD*