Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296040 | XP_003596481.1 | 99.049 | 526 | 5 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1063 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296040 | sp|Q8RWG3|RER6_ARATH | 26.168 | 321 | 207 | 9 | 173 | 474 | 418 | 727 | 3.00e-17 | 89.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296040 | G7IR51 | 99.049 | 526 | 5 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1063 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0296040 | Msa0333860 | 0.900589 | 6.300686e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296040 | MtrunA17_Chr2g0318431 | 99.049 | 526 | 5 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1063 |
| Msa0296040 | MtrunA17_Chr7g0240091 | 29.680 | 219 | 138 | 5 | 241 | 445 | 225 | 441 | 2.89e-18 | 87.4 |
| Msa0296040 | MtrunA17_Chr3g0114241 | 28.287 | 251 | 159 | 6 | 173 | 408 | 426 | 670 | 5.53e-17 | 84.3 |
| Msa0296040 | MtrunA17_Chr2g0320711 | 21.992 | 241 | 174 | 3 | 179 | 410 | 155 | 390 | 3.62e-13 | 71.6 |
| Msa0296040 | MtrunA17_Chr3g0090071 | 26.554 | 177 | 124 | 2 | 238 | 408 | 164 | 340 | 4.12e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296040 | AT5G24690.1 | 66.729 | 538 | 147 | 10 | 3 | 526 | 2 | 521 | 0.0 | 617 |
| Msa0296040 | AT3G56140.2 | 25.392 | 319 | 212 | 7 | 173 | 474 | 199 | 508 | 1.22e-18 | 89.4 |
| Msa0296040 | AT3G56140.1 | 26.168 | 321 | 207 | 9 | 173 | 474 | 418 | 727 | 3.05e-18 | 89.0 |
| Msa0296040 | AT3G56140.3 | 26.168 | 321 | 207 | 9 | 173 | 474 | 418 | 727 | 3.05e-18 | 89.0 |
| Msa0296040 | AT2G40400.2 | 25.692 | 253 | 165 | 4 | 173 | 409 | 409 | 654 | 2.39e-17 | 85.9 |
| Msa0296040 | AT2G40400.1 | 25.692 | 253 | 165 | 4 | 173 | 409 | 409 | 654 | 2.39e-17 | 85.9 |
| Msa0296040 | AT2G40400.3 | 25.703 | 249 | 162 | 4 | 173 | 405 | 409 | 650 | 3.38e-16 | 82.0 |
| Msa0296040 | AT5G22790.1 | 28.019 | 207 | 136 | 5 | 241 | 434 | 209 | 415 | 9.56e-16 | 80.1 |
| Msa0296040 | AT2G37860.3 | 27.222 | 180 | 122 | 2 | 241 | 411 | 209 | 388 | 5.97e-15 | 77.4 |
| Msa0296040 | AT2G37860.4 | 27.222 | 180 | 122 | 2 | 241 | 411 | 209 | 388 | 5.97e-15 | 77.4 |
Find 171 sgRNAs with CRISPR-Local
Find 425 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATTGTCCTTGGTGGTTTC+TGG | 0.099632 | 2_3:-48880983 | Msa0296040:three_prime_UTR |
| TCAAAGAATGCAGTTGTTTC+TGG | 0.145362 | 2_3:-48881190 | Msa0296040:CDS |
| TTGAAATGAGCTATCCTCTT+AGG | 0.209103 | 2_3:-48882078 | Msa0296040:CDS |
| GTTCGTCAGTTTGATGTTAT+TGG | 0.210309 | 2_3:-48881671 | Msa0296040:CDS |
| TGTTTCTGGGCTTGGTCTCT+TGG | 0.267949 | 2_3:-48881176 | Msa0296040:CDS |
| CTCCCAAAGCTCGTCGAAAA+AGG | 0.281953 | 2_3:-48881108 | Msa0296040:CDS |
| TTGCTAAGAATTTCACCATT+TGG | 0.287583 | 2_3:+48882970 | None:intergenic |
| AAACACTTTGGCTAAGAAAA+AGG | 0.291899 | 2_3:-48881957 | Msa0296040:CDS |
| GGGAGTTTAGGGAAGGGTTT+TGG | 0.293170 | 2_3:+48886114 | None:intergenic |
| GCCGCGCCTCCTTCCGCTTC+CGG | 0.298518 | 2_3:-48885973 | Msa0296040:CDS |
| TACGGAGGAGAGGGAGTTTA+GGG | 0.300913 | 2_3:+48886103 | None:intergenic |
| TGCTAAGAATTTCACCATTT+GGG | 0.301877 | 2_3:+48882971 | None:intergenic |
| TTACGGAGGAGAGGGAGTTT+AGG | 0.308680 | 2_3:+48886102 | None:intergenic |
| CATGCAATGCCGTTGTTGTT+TGG | 0.314152 | 2_3:-48882183 | Msa0296040:CDS |
| CAGACCCTGCTTTCATGTAT+AGG | 0.316471 | 2_3:-48882412 | Msa0296040:CDS |
| CTCATTTCAAATATGTTGTT+TGG | 0.318442 | 2_3:+48882091 | None:intergenic |
| AACTCCAAGCCAGGCACGTT+TGG | 0.323970 | 2_3:+48881309 | None:intergenic |
| GCAAAATAGAGAAGTCTCTT+TGG | 0.324116 | 2_3:-48886347 | None:intergenic |
| TGGATTTGCCTGCTGGATTT+CGG | 0.338280 | 2_3:-48883101 | Msa0296040:CDS |
| ACACAGCATCCACAAATTTA+CGG | 0.348932 | 2_3:+48883148 | None:intergenic |
| TGTTCTTCAGCACAGCATTC+AGG | 0.350694 | 2_3:-48881640 | Msa0296040:intron |
| GAAGGGATGGATGAGTTCAT+TGG | 0.350804 | 2_3:+48886150 | None:intergenic |
| AATGCAGTTGTTTCTGGGCT+TGG | 0.351608 | 2_3:-48881184 | Msa0296040:CDS |
| GTTTCTGGGCTTGGTCTCTT+GGG | 0.363561 | 2_3:-48881175 | Msa0296040:CDS |
| CAGGGTGTTAAACGTTCAAC+TGG | 0.367842 | 2_3:-48881341 | Msa0296040:CDS |
| CAAAATAGAGAAGTCTCTTT+GGG | 0.370205 | 2_3:-48886346 | None:intergenic |
| AGAGAAGTCTCTTTGGGATT+GGG | 0.378430 | 2_3:-48886340 | Msa0296040:five_prime_UTR |
| TAGAGAAGTCTCTTTGGGAT+TGG | 0.390738 | 2_3:-48886341 | Msa0296040:five_prime_UTR |
| CCGTATTTACCTTTCATAAC+CGG | 0.395087 | 2_3:+48885940 | None:intergenic |
| CCGTTCAAGCAGCGAGGAAC+CGG | 0.396666 | 2_3:+48886011 | None:intergenic |
| AACAACCATCATCCTCAAAA+TGG | 0.398226 | 2_3:-48881219 | Msa0296040:CDS |
| CAAAGAATGCAGTTGTTTCT+GGG | 0.400070 | 2_3:-48881189 | Msa0296040:CDS |
| GAAGCGGAAGGAGGCGCGGC+CGG | 0.402187 | 2_3:+48885976 | None:intergenic |
| TTTAAGCGCGGGTGCAGTAC+AGG | 0.403623 | 2_3:-48881990 | Msa0296040:CDS |
| GCGTGAGACGACATCGTTTA+GGG | 0.407867 | 2_3:+48886198 | None:intergenic |
| AACTCTTGAAAGTTTACAAC+AGG | 0.411065 | 2_3:-48881258 | Msa0296040:CDS |
| CATAACCGGATTAATGTTAC+CGG | 0.413040 | 2_3:+48885954 | None:intergenic |
| GAAGTATGCGTCTTCTAAAC+AGG | 0.414202 | 2_3:+48883324 | None:intergenic |
| TGAAATGAGCTATCCTCTTA+GGG | 0.414318 | 2_3:-48882077 | Msa0296040:CDS |
| AAATTCAGTAATAATATTGT+AGG | 0.416783 | 2_3:+48880907 | None:intergenic |
| CTTGCTCCTTGTCGATCATA+TGG | 0.419050 | 2_3:-48882157 | Msa0296040:CDS |
| CGCGTGAGACGACATCGTTT+AGG | 0.420756 | 2_3:+48886197 | None:intergenic |
| TTCTGGCTGCTGCTCTAGGA+GGG | 0.421378 | 2_3:-48880966 | Msa0296040:three_prime_UTR |
| ACTATCATGGATTTGCCTGC+TGG | 0.422360 | 2_3:-48883108 | Msa0296040:CDS |
| ATTGTTGAGAGTGGAGAGGA+AGG | 0.425313 | 2_3:+48886284 | None:intergenic |
| TGGGTTGGTTGATCCCTCCA+TGG | 0.426222 | 2_3:-48886321 | Msa0296040:five_prime_UTR |
| CTGGATCGGCCTAGATTCTT+CGG | 0.429225 | 2_3:-48881063 | Msa0296040:exon |
| TGGTTTCTGGCTGCTGCTCT+AGG | 0.435012 | 2_3:-48880970 | Msa0296040:three_prime_UTR |
| GCTATTTGACCGTAAATTTG+TGG | 0.435761 | 2_3:-48883157 | Msa0296040:CDS |
| CGCTTCCGGTAACATTAATC+CGG | 0.439389 | 2_3:-48885959 | Msa0296040:CDS |
| AAGCCTACTGGCAGTTGGCC+TGG | 0.440504 | 2_3:+48882941 | None:intergenic |
| TGATACTGCTGTATTGTCCT+TGG | 0.440868 | 2_3:-48880993 | Msa0296040:three_prime_UTR |
| AAAGGTAAATACGGTGCGTT+TGG | 0.441403 | 2_3:-48885931 | Msa0296040:CDS |
| CCGGTTCCTCGCTGCTTGAA+CGG | 0.442423 | 2_3:-48886011 | Msa0296040:CDS |
| TACTTTGATGACTTTGATGA+TGG | 0.442659 | 2_3:-48883368 | Msa0296040:CDS |
| TGTTTACATCCGAAGAATCT+AGG | 0.443496 | 2_3:+48881054 | None:intergenic |
| ACTTCCAAACGTGCCTGGCT+TGG | 0.443805 | 2_3:-48881313 | Msa0296040:CDS |
| AGTAATAATATTGTAGGTGA+TGG | 0.444728 | 2_3:+48880913 | None:intergenic |
| TATCAAGATCTTTCATTGGC+AGG | 0.445171 | 2_3:-48882893 | Msa0296040:intron |
| TGCAGGTCAAATTCCCTAAG+AGG | 0.447055 | 2_3:+48882064 | None:intergenic |
| GGACTATCAAGATCTTTCAT+TGG | 0.448462 | 2_3:-48882897 | Msa0296040:CDS |
| CTTGGTTAGCTCAGCCCAAA+TGG | 0.451387 | 2_3:-48882985 | Msa0296040:CDS |
| CTTTATTGACAGCTAGCCAC+TGG | 0.453175 | 2_3:-48883470 | Msa0296040:intron |
| AAGGGATGGATGAGTTCATT+GGG | 0.454914 | 2_3:+48886151 | None:intergenic |
| TACTGCTGTATTGTCCTTGG+TGG | 0.459021 | 2_3:-48880990 | Msa0296040:three_prime_UTR |
| AGTTTACAAATCGGAAAGAT+AGG | 0.464129 | 2_3:-48882343 | Msa0296040:intron |
| GAGAGGAAGGAGAAGAAGAT+AGG | 0.464856 | 2_3:+48886297 | None:intergenic |
| ATCAGTTATGGTGGTGGTGA+TGG | 0.468563 | 2_3:-48883419 | Msa0296040:CDS |
| CAAGACGGCGGTGACGGTTA+CGG | 0.473141 | 2_3:+48886085 | None:intergenic |
| CGGATTAATGTTACCGGAAG+CGG | 0.473328 | 2_3:+48885960 | None:intergenic |
| CACATAGCAGTTGATATCTC+AGG | 0.479279 | 2_3:+48881711 | None:intergenic |
| GTAATAATATTGTAGGTGAT+GGG | 0.482515 | 2_3:+48880914 | None:intergenic |
| TGAACGGTGTTTCGCTGCTC+CGG | 0.487700 | 2_3:-48885995 | Msa0296040:CDS |
| ATCTGCCTCAACTCCAAGCC+AGG | 0.489398 | 2_3:+48881300 | None:intergenic |
| GAGAGACTTCCAAACGTGCC+TGG | 0.493581 | 2_3:-48881318 | Msa0296040:CDS |
| AGAAACCTATACATGAAAGC+AGG | 0.495167 | 2_3:+48882407 | None:intergenic |
| CGGTAGGCTGCTCTGTGTGG+TGG | 0.496241 | 2_3:-48882367 | Msa0296040:CDS |
| CCGGTTATGAAAGGTAAATA+CGG | 0.497596 | 2_3:-48885940 | Msa0296040:CDS |
| GGTGATGGAGGTGATGATAA+TGG | 0.499387 | 2_3:-48883404 | Msa0296040:CDS |
| GGGTTGGTTGATCCCTCCAT+GGG | 0.503995 | 2_3:-48886320 | Msa0296040:five_prime_UTR |
| CTGCTATGTGGATTTGATAG+AGG | 0.504429 | 2_3:-48881698 | Msa0296040:CDS |
| ATTTCGGCAAGCTTATGAAA+TGG | 0.506671 | 2_3:-48883085 | Msa0296040:intron |
| TATTGACAGCTAGCCACTGG+GGG | 0.508333 | 2_3:-48883467 | Msa0296040:intron |
| CGGGAGAAGCGGACCACGAT+CGG | 0.509858 | 2_3:+48886058 | None:intergenic |
| GCTGCTGAGTTGTGCATGGT+TGG | 0.511086 | 2_3:-48882013 | Msa0296040:CDS |
| GGTCTCTTGGGCATCAAACA+AGG | 0.512113 | 2_3:-48881163 | Msa0296040:CDS |
| GAGGAGAGGGAGTTTAGGGA+AGG | 0.512666 | 2_3:+48886107 | None:intergenic |
| ATATCGCTGTCGACATCGGC+GGG | 0.513440 | 2_3:+48886039 | None:intergenic |
| TTGACAGCTAGCCACTGGGG+GGG | 0.517863 | 2_3:-48883465 | Msa0296040:intron |
| TGGATGCTGTGTTGAATGAA+TGG | 0.518394 | 2_3:-48883137 | Msa0296040:CDS |
| ATTGGAAAGATAATCAGTTA+TGG | 0.523781 | 2_3:-48883431 | Msa0296040:CDS |
| TTTCTGGCTGCTGCTCTAGG+AGG | 0.530235 | 2_3:-48880967 | Msa0296040:three_prime_UTR |
| AAGTCTCTTTGGGATTGGGT+TGG | 0.530290 | 2_3:-48886336 | Msa0296040:five_prime_UTR |
| AACATTAATCCGGTTATGAA+AGG | 0.530557 | 2_3:-48885949 | Msa0296040:CDS |
| CAAGGGAATGCAGATGTGTC+TGG | 0.532654 | 2_3:-48881145 | Msa0296040:CDS |
| GACTTTGATGATGGTGATGA+GGG | 0.532919 | 2_3:-48883359 | Msa0296040:CDS |
| AGGAGAGGGAGTTTAGGGAA+GGG | 0.533110 | 2_3:+48886108 | None:intergenic |
| TCTGGCTGCTGCTCTAGGAG+GGG | 0.534093 | 2_3:-48880965 | Msa0296040:three_prime_UTR |
| GATGGTGATGAGGGAGATGA+AGG | 0.535109 | 2_3:-48883350 | Msa0296040:CDS |
| TTTATTGACAGCTAGCCACT+GGG | 0.539795 | 2_3:-48883469 | Msa0296040:intron |
| GTCGACAGCGATATTTCCTC+CGG | 0.540129 | 2_3:-48886030 | Msa0296040:CDS |
| ACGTGCCTGGCTTGGAGTTG+AGG | 0.540692 | 2_3:-48881305 | Msa0296040:CDS |
| GAAATAAGCCTACTGGCAGT+TGG | 0.543973 | 2_3:+48882936 | None:intergenic |
| GTCGACATCGGCGGGAGAAG+CGG | 0.545373 | 2_3:+48886047 | None:intergenic |
| AAGACGCATACTTCTTCAAG+AGG | 0.549712 | 2_3:-48883315 | Msa0296040:intron |
| CTTCGATTTCTCGAGCGTAA+CGG | 0.550925 | 2_3:+48885906 | None:intergenic |
| AGCAGTAATGCACTTGGCTA+TGG | 0.551775 | 2_3:-48881758 | Msa0296040:CDS |
| GGTAGGCTGCTCTGTGTGGT+GGG | 0.552612 | 2_3:-48882366 | Msa0296040:CDS |
| GGAAATATCGCTGTCGACAT+CGG | 0.555376 | 2_3:+48886035 | None:intergenic |
| AGTTCATCTGACTGAGCTAG+TGG | 0.556219 | 2_3:+48881277 | None:intergenic |
| TGCATGGTTGGTTTAAGCGC+GGG | 0.557360 | 2_3:-48882001 | Msa0296040:CDS |
| GGGTGCATTGTCAAACACTT+TGG | 0.559747 | 2_3:-48881969 | Msa0296040:CDS |
| GGATAACAAGACGGCGGTGA+CGG | 0.559797 | 2_3:+48886079 | None:intergenic |
| TTAAGCGCGGGTGCAGTACA+GGG | 0.561396 | 2_3:-48881989 | Msa0296040:CDS |
| AATTCTTAGCAATGAATGCC+AGG | 0.562493 | 2_3:-48882959 | Msa0296040:CDS |
| CTGAGATATCAACTGCTATG+TGG | 0.569147 | 2_3:-48881710 | Msa0296040:CDS |
| TCTATTAGAGCAAGTTGCTA+CGG | 0.569531 | 2_3:-48882387 | Msa0296040:CDS |
| CAAGGCTGCTGAGTTGTGCA+TGG | 0.572049 | 2_3:-48882017 | Msa0296040:CDS |
| TGAATGGCAAAGGACTATCA+TGG | 0.572451 | 2_3:-48883121 | Msa0296040:CDS |
| TAAGCTTGCCGAAATCCAGC+AGG | 0.573123 | 2_3:+48883093 | None:intergenic |
| ATTGACAGCTAGCCACTGGG+GGG | 0.573621 | 2_3:-48883466 | Msa0296040:intron |
| CATATGATCGACAAGGAGCA+AGG | 0.573804 | 2_3:+48882158 | None:intergenic |
| AAGAACTGAATTGTTGAGAG+TGG | 0.574354 | 2_3:+48886275 | None:intergenic |
| GGTGACGGTTACGGAGGAGA+GGG | 0.577402 | 2_3:+48886094 | None:intergenic |
| CTGAATTGTTGAGAGTGGAG+AGG | 0.579781 | 2_3:+48886280 | None:intergenic |
| ACCGGAAGCGGAAGGAGGCG+CGG | 0.580831 | 2_3:+48885972 | None:intergenic |
| TGTGGTGGGAGTTTACAAAT+CGG | 0.581274 | 2_3:-48882352 | Msa0296040:CDS |
| TGACTTTGATGATGGTGATG+AGG | 0.586108 | 2_3:-48883360 | Msa0296040:CDS |
| GGAAAGATAATCAGTTATGG+TGG | 0.588023 | 2_3:-48883428 | Msa0296040:CDS |
| GGATGGATGAGTTCATTGGG+AGG | 0.588310 | 2_3:+48886154 | None:intergenic |
| AGTTATGGTGGTGGTGATGG+AGG | 0.594111 | 2_3:-48883416 | Msa0296040:CDS |
| CGGTGACGGTTACGGAGGAG+AGG | 0.603340 | 2_3:+48886093 | None:intergenic |
| AGTGCATTACTGCTCACAGT+TGG | 0.605764 | 2_3:+48881767 | None:intergenic |
| GAAACCTATACATGAAAGCA+GGG | 0.605957 | 2_3:+48882408 | None:intergenic |
| GTCTCTTGGGCATCAAACAA+GGG | 0.607736 | 2_3:-48881162 | Msa0296040:CDS |
| TTAGAGCAAGTTGCTACGGT+AGG | 0.608583 | 2_3:-48882383 | Msa0296040:CDS |
| AAGTAACAAGTCTGCGCCTG+AGG | 0.609651 | 2_3:-48885863 | Msa0296040:intron |
| AACAACAACGGCATTGCATG+CGG | 0.610056 | 2_3:+48882186 | None:intergenic |
| TTATTGACAGCTAGCCACTG+GGG | 0.618084 | 2_3:-48883468 | Msa0296040:intron |
| GAGACGACATCGTTTAGGGA+TGG | 0.621378 | 2_3:+48886202 | None:intergenic |
| TTCAAGCAGCGAGGAACCGG+AGG | 0.621943 | 2_3:+48886014 | None:intergenic |
| AATATCGCTGTCGACATCGG+CGG | 0.624159 | 2_3:+48886038 | None:intergenic |
| GAAGAAGATAGGCCCATGGA+GGG | 0.624246 | 2_3:+48886308 | None:intergenic |
| CTACGGTAGGCTGCTCTGTG+TGG | 0.624582 | 2_3:-48882370 | Msa0296040:CDS |
| AGGAGAAGAAGATAGGCCCA+TGG | 0.626887 | 2_3:+48886304 | None:intergenic |
| TAATAATATTGTAGGTGATG+GGG | 0.630018 | 2_3:+48880915 | None:intergenic |
| ATGTTACCGGAAGCGGAAGG+AGG | 0.631148 | 2_3:+48885967 | None:intergenic |
| CTGTGTTGAATGAATGGCAA+AGG | 0.635333 | 2_3:-48883131 | Msa0296040:CDS |
| ATGTGGATTTGATAGAGGAA+TGG | 0.635556 | 2_3:-48881693 | Msa0296040:CDS |
| AAGATAATCAGTTATGGTGG+TGG | 0.635917 | 2_3:-48883425 | Msa0296040:CDS |
| ATTACTGCTCACAGTTGGAA+CGG | 0.641868 | 2_3:+48881772 | None:intergenic |
| GACGGCGGTGACGGTTACGG+AGG | 0.646221 | 2_3:+48886088 | None:intergenic |
| ATATGATCGACAAGGAGCAA+GGG | 0.646370 | 2_3:+48882159 | None:intergenic |
| ATTTCCAGAAAACTACCGCA+AGG | 0.647382 | 2_3:-48882918 | Msa0296040:CDS |
| GCCGTCTTGTTATCCGATCG+TGG | 0.647592 | 2_3:-48886071 | Msa0296040:CDS |
| GTGCATGGTTGGTTTAAGCG+CGG | 0.651626 | 2_3:-48882002 | Msa0296040:CDS |
| AATATTGTAGGTGATGGGGA+CGG | 0.651643 | 2_3:+48880919 | None:intergenic |
| ACTGTGAGCAGTAATGCACT+TGG | 0.654487 | 2_3:-48881764 | Msa0296040:CDS |
| AAAGATCTTGATAGTCCTTG+CGG | 0.654748 | 2_3:+48882903 | None:intergenic |
| ACCACGATCGGATAACAAGA+CGG | 0.656119 | 2_3:+48886070 | None:intergenic |
| AGCAAGGGACCAAACAACAA+CGG | 0.657203 | 2_3:+48882174 | None:intergenic |
| CATTGCATGCGGCTGCAGTG+AGG | 0.659429 | 2_3:+48882197 | None:intergenic |
| ATGCCAGGCCAACTGCCAGT+AGG | 0.660255 | 2_3:-48882944 | Msa0296040:CDS |
| TTAATGTTACCGGAAGCGGA+AGG | 0.680051 | 2_3:+48885964 | None:intergenic |
| GTGTTTCCATATGATCGACA+AGG | 0.689294 | 2_3:+48882151 | None:intergenic |
| AGAAGAAGATAGGCCCATGG+AGG | 0.689679 | 2_3:+48886307 | None:intergenic |
| AGGGTGTTAAACGTTCAACT+GGG | 0.694208 | 2_3:-48881340 | Msa0296040:CDS |
| GGTGATGAGGGAGATGAAGG+TGG | 0.707528 | 2_3:-48883347 | Msa0296040:CDS |
| GCAGCAGCCAGAAACCACCA+AGG | 0.727389 | 2_3:+48880976 | None:intergenic |
| GAAACACCGTTCAAGCAGCG+AGG | 0.728116 | 2_3:+48886005 | None:intergenic |
| ACGATCGGATAACAAGACGG+CGG | 0.806476 | 2_3:+48886073 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATATATTAAAATACAA+CGG | + | chr2_3:48882795-48882814 | None:intergenic | 10.0% |
| !!! | CTTTTTATGTTTTTTTTATT+TGG | - | chr2_3:48883614-48883633 | Msa0296040:intron | 10.0% |
| !!! | TAACTAAAATTATGATTTTA+GGG | - | chr2_3:48884128-48884147 | Msa0296040:intron | 10.0% |
| !! | AAGAAAAAAAAAACATAAAT+GGG | + | chr2_3:48886276-48886295 | None:intergenic | 10.0% |
| !! | AAAGAAAAAAAAAACATAAA+TGG | + | chr2_3:48886277-48886296 | None:intergenic | 10.0% |
| !! | AATTATATTGTTTGTGTTTA+CGG | - | chr2_3:48881410-48881429 | Msa0296040:intron | 15.0% |
| !! | AATTAATTATTAAACTTCAG+TGG | - | chr2_3:48881483-48881502 | Msa0296040:intron | 15.0% |
| !! | AATTGTATAATCATATTTGT+CGG | - | chr2_3:48881782-48881801 | Msa0296040:CDS | 15.0% |
| !!! | AAAATTAATCTGTTTGTTAT+GGG | - | chr2_3:48882091-48882110 | Msa0296040:CDS | 15.0% |
| !!! | TGTTTTTTTATGCAAATATT+AGG | - | chr2_3:48882287-48882306 | Msa0296040:intron | 15.0% |
| !!! | TTTTATACATCAAAATATTC+AGG | + | chr2_3:48882599-48882618 | None:intergenic | 15.0% |
| !! | AGAAAAAGGATATATTATAA+AGG | - | chr2_3:48882673-48882692 | Msa0296040:intron | 15.0% |
| !! | AAGCTAATATAAAAATAAAG+CGG | - | chr2_3:48883383-48883402 | Msa0296040:CDS | 15.0% |
| !!! | CTAACTAAAATTATGATTTT+AGG | - | chr2_3:48884127-48884146 | Msa0296040:intron | 15.0% |
| !!! | GTTAACTTTATTTTGATTTT+AGG | - | chr2_3:48884881-48884900 | Msa0296040:intron | 15.0% |
| !!! | TATTGATAACATTTTCTAAA+TGG | + | chr2_3:48885700-48885719 | None:intergenic | 15.0% |
| !! | AAATTCAGTAATAATATTGT+AGG | + | chr2_3:48886232-48886251 | None:intergenic | 15.0% |
| !!! | TATTATTACTGAATTTTTTC+AGG | - | chr2_3:48886236-48886255 | Msa0296040:five_prime_UTR | 15.0% |
| !!! | ATTATTACTGAATTTTTTCA+GGG | - | chr2_3:48886237-48886256 | Msa0296040:five_prime_UTR | 15.0% |
| !! | TTGACTTATCATTGTTAAAA+CGG | - | chr2_3:48881664-48881683 | Msa0296040:CDS | 20.0% |
| !!! | GAAAATTAATCTGTTTGTTA+TGG | - | chr2_3:48882090-48882109 | Msa0296040:CDS | 20.0% |
| !!! | AAATATTAGGTTGTTTGTTT+AGG | - | chr2_3:48882300-48882319 | Msa0296040:intron | 20.0% |
| !! | ATTGTAGGAAAATATTTGTT+AGG | - | chr2_3:48882535-48882554 | Msa0296040:intron | 20.0% |
| !!! | CAGTTTTCTTTTTTAGAAAA+AGG | - | chr2_3:48882659-48882678 | Msa0296040:intron | 20.0% |
| !! | AATATATTAAAATACAACGG+AGG | + | chr2_3:48882792-48882811 | None:intergenic | 20.0% |
| !!! | TATATTTTGTCAAAGAAACT+TGG | - | chr2_3:48882806-48882825 | Msa0296040:intron | 20.0% |
| !! | ATCACTACAATTTATAATCT+GGG | - | chr2_3:48882884-48882903 | Msa0296040:intron | 20.0% |
| !! | ATAAATTAAAGAACATCAAG+TGG | - | chr2_3:48883129-48883148 | Msa0296040:CDS | 20.0% |
| !! | TAAATTAAAGAACATCAAGT+GGG | - | chr2_3:48883130-48883149 | Msa0296040:CDS | 20.0% |
| !! | TTAATTAGTGAAATGATTTC+TGG | - | chr2_3:48883301-48883320 | Msa0296040:intron | 20.0% |
| !! | TAATTAGTGAAATGATTTCT+GGG | - | chr2_3:48883302-48883321 | Msa0296040:intron | 20.0% |
| !! | AAATGTATTATGAATCCAAA+TGG | - | chr2_3:48883504-48883523 | Msa0296040:intron | 20.0% |
| !! | CATTTATGTTATTAAATTGC+AGG | - | chr2_3:48883854-48883873 | Msa0296040:intron | 20.0% |
| !!! | AAAGGTATTTGAACAAAAAT+TGG | + | chr2_3:48884383-48884402 | None:intergenic | 20.0% |
| !!! | TGTATAAAATTATTTTGCAC+AGG | - | chr2_3:48884694-48884713 | Msa0296040:intron | 20.0% |
| !!! | TTGTCTATTTTGAAAAGATA+TGG | - | chr2_3:48884820-48884839 | Msa0296040:intron | 20.0% |
| !! | AAAAGATATGGAAGTTTATT+GGG | - | chr2_3:48884832-48884851 | Msa0296040:intron | 20.0% |
| !!! | ATCAATAGTTTTGTATGTAT+TGG | - | chr2_3:48885713-48885732 | Msa0296040:intron | 20.0% |
| !!! | TGTCAAATTTTTTTGATTAC+TGG | - | chr2_3:48886112-48886131 | Msa0296040:CDS | 20.0% |
| ! | TTTCTTTCTTCACTAGAATT+AGG | - | chr2_3:48881309-48881328 | Msa0296040:CDS | 25.0% |
| ! | TTCTTTCTTCACTAGAATTA+GGG | - | chr2_3:48881310-48881329 | Msa0296040:CDS | 25.0% |
| !! | CTTAATAACTTGTAGAGAAT+TGG | - | chr2_3:48881633-48881652 | Msa0296040:intron | 25.0% |
| ! | TAAAATGAATCTGTCTGTTA+TGG | - | chr2_3:48882152-48882171 | Msa0296040:CDS | 25.0% |
| ! | AAAATGAATCTGTCTGTTAT+GGG | - | chr2_3:48882153-48882172 | Msa0296040:CDS | 25.0% |
| ! | TTCAATTAAGGTAATTCCTA+AGG | + | chr2_3:48882460-48882479 | None:intergenic | 25.0% |
| ! | GTGATCAAATGATTCAATTA+AGG | + | chr2_3:48882472-48882491 | None:intergenic | 25.0% |
| ! | TCTAGCAAGAATTATATTGT+AGG | - | chr2_3:48882520-48882539 | Msa0296040:intron | 25.0% |
| ! | CATCACTACAATTTATAATC+TGG | - | chr2_3:48882883-48882902 | Msa0296040:intron | 25.0% |
| ! | TTTATCTGCATTGCAAAAAT+TGG | + | chr2_3:48883065-48883084 | None:intergenic | 25.0% |
| ! | AATGCAGATAAAATAAGTGA+AGG | - | chr2_3:48883073-48883092 | Msa0296040:intron | 25.0% |
| !! | ATGTTTATACTTTGTTTCTC+TGG | - | chr2_3:48883244-48883263 | Msa0296040:intron | 25.0% |
| !! | TGTTTATACTTTGTTTCTCT+GGG | - | chr2_3:48883245-48883264 | Msa0296040:intron | 25.0% |
| ! | TATTTGATTAAATCTGTACG+AGG | + | chr2_3:48883538-48883557 | None:intergenic | 25.0% |
| ! | ATTGGAAAGATAATCAGTTA+TGG | - | chr2_3:48883705-48883724 | Msa0296040:intron | 25.0% |
| ! | TTTACAGTTTATGCTTGTTT+AGG | - | chr2_3:48884082-48884101 | Msa0296040:intron | 25.0% |
| !!! | TCATAATTTTAGTTAGTACG+CGG | + | chr2_3:48884123-48884142 | None:intergenic | 25.0% |
| !!! | AAAATTATGATTTTAGGGCT+TGG | - | chr2_3:48884133-48884152 | Msa0296040:intron | 25.0% |
| ! | AGGTAATCTCAATTATGTTT+CGG | - | chr2_3:48884263-48884282 | Msa0296040:intron | 25.0% |
| !!! | TTTTATCCTGAAAGTATAAC+AGG | - | chr2_3:48884483-48884502 | Msa0296040:intron | 25.0% |
| !! | TTTATCCTGAAAGTATAACA+GGG | - | chr2_3:48884484-48884503 | Msa0296040:intron | 25.0% |
| ! | TCATCAAATCTTGAATATGA+TGG | - | chr2_3:48884616-48884635 | Msa0296040:intron | 25.0% |
| !! | AGATTGATGAATATTCCTTT+TGG | - | chr2_3:48884639-48884658 | Msa0296040:intron | 25.0% |
| ! | GAAAAGATATGGAAGTTTAT+TGG | - | chr2_3:48884831-48884850 | Msa0296040:intron | 25.0% |
| ! | AAAGATATGGAAGTTTATTG+GGG | - | chr2_3:48884833-48884852 | Msa0296040:intron | 25.0% |
| ! | CTCATTTCAAATATGTTGTT+TGG | + | chr2_3:48885048-48885067 | None:intergenic | 25.0% |
| ! | TGAAAGGAAACAATACTTAT+TGG | - | chr2_3:48885598-48885617 | Msa0296040:intron | 25.0% |
| !! | ATAACATTTTCTAAATGGAG+AGG | + | chr2_3:48885695-48885714 | None:intergenic | 25.0% |
| !!! | ACTATTGTTGAATTTTGATG+TGG | - | chr2_3:48885741-48885760 | Msa0296040:intron | 25.0% |
| !! | CTTTGATATAAACCATTTTG+AGG | + | chr2_3:48885932-48885951 | None:intergenic | 25.0% |
| ! | TAATAATATTGTAGGTGATG+GGG | + | chr2_3:48886224-48886243 | None:intergenic | 25.0% |
| ! | GTAATAATATTGTAGGTGAT+GGG | + | chr2_3:48886225-48886244 | None:intergenic | 25.0% |
| ! | AGTAATAATATTGTAGGTGA+TGG | + | chr2_3:48886226-48886245 | None:intergenic | 25.0% |
| GAAAGAGAGAAAGTGAAAAA+CGG | + | chr2_3:48880900-48880919 | None:intergenic | 30.0% | |
| !!! | TTGGTGATAAGGTTTTAGAA+GGG | + | chr2_3:48881006-48881025 | None:intergenic | 30.0% |
| !!! | TTTGGTGATAAGGTTTTAGA+AGG | + | chr2_3:48881007-48881026 | None:intergenic | 30.0% |
| AACATTAATCCGGTTATGAA+AGG | - | chr2_3:48881187-48881206 | Msa0296040:CDS | 30.0% | |
| AAAGAAATATGACAAACCTC+AGG | + | chr2_3:48881292-48881311 | None:intergenic | 30.0% | |
| GATCATTTCTTCAATTCAAC+AGG | + | chr2_3:48881381-48881400 | None:intergenic | 30.0% | |
| TGTTTACGGTACAATCAATT+AGG | - | chr2_3:48881424-48881443 | Msa0296040:intron | 30.0% | |
| TTATTAAACTTCAGTGGCTT+AGG | - | chr2_3:48881489-48881508 | Msa0296040:intron | 30.0% | |
| GTCGTTATAATCGTGAAAAA+TGG | - | chr2_3:48881550-48881569 | Msa0296040:intron | 30.0% | |
| TTGAATGCAATCACATGTAA+CGG | - | chr2_3:48881578-48881597 | Msa0296040:intron | 30.0% | |
| ! | TAACTTGTAGAGAATTGGTT+TGG | - | chr2_3:48881638-48881657 | Msa0296040:intron | 30.0% |
| TGTTTGTGTAAGTATGTGTT+TGG | + | chr2_3:48881729-48881748 | None:intergenic | 30.0% | |
| !!! | TATTTTTTCCAACTTTCCGT+CGG | - | chr2_3:48881874-48881893 | Msa0296040:intron | 30.0% |
| !!! | CACTTTTTCATTATTACCGA+CGG | + | chr2_3:48881893-48881912 | None:intergenic | 30.0% |
| TTATGCAAGATGTGTTGTAT+TGG | - | chr2_3:48881975-48881994 | Msa0296040:CDS | 30.0% | |
| !! | TGTGAAGTATCGATTTGTTT+AGG | - | chr2_3:48882333-48882352 | Msa0296040:intron | 30.0% |
| AAACGTATTAATGTGAAGAC+TGG | + | chr2_3:48882393-48882412 | None:intergenic | 30.0% | |
| ! | AATTCCTAAGGCATTATATG+TGG | + | chr2_3:48882448-48882467 | None:intergenic | 30.0% |
| ! | AATATTTGTTAGGCCTACAT+CGG | - | chr2_3:48882545-48882564 | Msa0296040:intron | 30.0% |
| TCGAAGATATGTTCAGAAAT+GGG | - | chr2_3:48882955-48882974 | Msa0296040:CDS | 30.0% | |
| !! | TATTTTGTTACTTCTGGTTG+CGG | - | chr2_3:48883000-48883019 | Msa0296040:intron | 30.0% |
| AGATAAAATAAGTGAAGGTG+AGG | - | chr2_3:48883078-48883097 | Msa0296040:intron | 30.0% | |
| !!! | GTATTTCAGTTTTTTACCTC+TGG | + | chr2_3:48883281-48883300 | None:intergenic | 30.0% |
| ! | ATTTTTCCTTCCCAATAAGT+GGG | + | chr2_3:48883348-48883367 | None:intergenic | 30.0% |
| ! | TATTTTTCCTTCCCAATAAG+TGG | + | chr2_3:48883349-48883368 | None:intergenic | 30.0% |
| AGAATTAACAAAGACTCCAA+TGG | + | chr2_3:48883596-48883615 | None:intergenic | 30.0% | |
| GCTGTCAATAAAGCATAAAA+AGG | + | chr2_3:48883659-48883678 | None:intergenic | 30.0% | |
| ! | TACTTTGATGACTTTGATGA+TGG | - | chr2_3:48883768-48883787 | Msa0296040:intron | 30.0% |
| !! | TGTTTAGGTTGTAAAGCATT+TGG | - | chr2_3:48884097-48884116 | Msa0296040:intron | 30.0% |
| TGCTAAGAATTTCACCATTT+GGG | + | chr2_3:48884168-48884187 | None:intergenic | 30.0% | |
| TTGCTAAGAATTTCACCATT+TGG | + | chr2_3:48884169-48884188 | None:intergenic | 30.0% | |
| AAATTCATGATTCAGAAGCA+AGG | + | chr2_3:48884359-48884378 | None:intergenic | 30.0% | |
| ! | TCTCTCATTAAGATTTTCCT+CGG | + | chr2_3:48884443-48884462 | None:intergenic | 30.0% |
| TAAAACATAGATGAGAACTC+TGG | + | chr2_3:48884468-48884487 | None:intergenic | 30.0% | |
| ! | GGCTATATATTTTGCTTTCA+TGG | - | chr2_3:48884505-48884524 | Msa0296040:intron | 30.0% |
| ATACAACAATACACTCCAAA+AGG | + | chr2_3:48884657-48884676 | None:intergenic | 30.0% | |
| AGTTTACAAATCGGAAAGAT+AGG | - | chr2_3:48884793-48884812 | Msa0296040:intron | 30.0% | |
| !!! | ATTTTAGGATTAAGCAAGAG+TGG | - | chr2_3:48884896-48884915 | Msa0296040:intron | 30.0% |
| !!! | TTTTAGGATTAAGCAAGAGT+GGG | - | chr2_3:48884897-48884916 | Msa0296040:intron | 30.0% |
| !! | AGTTCAATGCTTTTTGTTCA+AGG | - | chr2_3:48885101-48885120 | Msa0296040:intron | 30.0% |
| AAACACTTTGGCTAAGAAAA+AGG | - | chr2_3:48885179-48885198 | Msa0296040:intron | 30.0% | |
| AATGCTATTGAACATAAGCT+GGG | + | chr2_3:48885228-48885247 | None:intergenic | 30.0% | |
| TTTCCTCCTACTAAATAAGT+TGG | - | chr2_3:48885526-48885545 | Msa0296040:intron | 30.0% | |
| TTCCTCCTACTAAATAAGTT+GGG | - | chr2_3:48885527-48885546 | Msa0296040:intron | 30.0% | |
| AAATGCCCAACTTATTTAGT+AGG | + | chr2_3:48885535-48885554 | None:intergenic | 30.0% | |
| TTTCCTTTCAACAGGATAAA+GGG | + | chr2_3:48885588-48885607 | None:intergenic | 30.0% | |
| ! | AAGTATTGTTTCCTTTCAAC+AGG | + | chr2_3:48885596-48885615 | None:intergenic | 30.0% |
| ! | TTTTGATGTGGTATGTATTG+AGG | - | chr2_3:48885753-48885772 | Msa0296040:intron | 30.0% |
| TTTGATGTGGTATGTATTGA+GGG | - | chr2_3:48885754-48885773 | Msa0296040:intron | 30.0% | |
| AACTCTTGAAAGTTTACAAC+AGG | - | chr2_3:48885878-48885897 | Msa0296040:CDS | 30.0% | |
| !! | ATAAACCATTTTGAGGATGA+TGG | + | chr2_3:48885925-48885944 | None:intergenic | 30.0% |
| AAAAAGGATTGTACGGAAAA+AGG | - | chr2_3:48886044-48886063 | Msa0296040:CDS | 30.0% | |
| AAGAACTGAATTGTTGAGAG+TGG | + | chr2_3:48880864-48880883 | None:intergenic | 35.0% | |
| !!! | TGATAAGGTTTTAGAAGGGA+TGG | + | chr2_3:48881002-48881021 | None:intergenic | 35.0% |
| CATAACCGGATTAATGTTAC+CGG | + | chr2_3:48881185-48881204 | None:intergenic | 35.0% | |
| CCGTATTTACCTTTCATAAC+CGG | + | chr2_3:48881199-48881218 | None:intergenic | 35.0% | |
| CCGGTTATGAAAGGTAAATA+CGG | - | chr2_3:48881196-48881215 | Msa0296040:CDS | 35.0% | |
| TGTTATGGGAGATTACATGT+TGG | - | chr2_3:48882105-48882124 | Msa0296040:CDS | 35.0% | |
| GTTATGGGAGATTACATGTT+GGG | - | chr2_3:48882106-48882125 | Msa0296040:CDS | 35.0% | |
| ! | AGATTCATTTTACGTGTCCA+AGG | + | chr2_3:48882144-48882163 | None:intergenic | 35.0% |
| ATCGTGAAGACTTATGATGT+TGG | - | chr2_3:48882235-48882254 | Msa0296040:CDS | 35.0% | |
| AGAACCACATATAATGCCTT+AGG | - | chr2_3:48882441-48882460 | Msa0296040:intron | 35.0% | |
| GTCGAAGATATGTTCAGAAA+TGG | - | chr2_3:48882954-48882973 | Msa0296040:CDS | 35.0% | |
| !! | AGCTCCTATTTTGTTACTTC+TGG | - | chr2_3:48882994-48883013 | Msa0296040:intron | 35.0% |
| GCAACCAGAAGTAACAAAAT+AGG | + | chr2_3:48883001-48883020 | None:intergenic | 35.0% | |
| ATTAAAGAACATCAAGTGGG+AGG | - | chr2_3:48883133-48883152 | Msa0296040:CDS | 35.0% | |
| TTAAAGAACATCAAGTGGGA+GGG | - | chr2_3:48883134-48883153 | Msa0296040:CDS | 35.0% | |
| ! | TTTGAAGCATTCCCACTTAT+TGG | - | chr2_3:48883334-48883353 | Msa0296040:CDS | 35.0% |
| ! | TTGAAGCATTCCCACTTATT+GGG | - | chr2_3:48883335-48883354 | Msa0296040:CDS | 35.0% |
| GGAAAGATAATCAGTTATGG+TGG | - | chr2_3:48883708-48883727 | Msa0296040:intron | 35.0% | |
| AAGATAATCAGTTATGGTGG+TGG | - | chr2_3:48883711-48883730 | Msa0296040:intron | 35.0% | |
| !! | TTTTATTTGACGTCTCCTGA+AGG | - | chr2_3:48883924-48883943 | Msa0296040:intron | 35.0% |
| GCTATTTGACCGTAAATTTG+TGG | - | chr2_3:48883979-48883998 | Msa0296040:intron | 35.0% | |
| ACACAGCATCCACAAATTTA+CGG | + | chr2_3:48883991-48884010 | None:intergenic | 35.0% | |
| ATTTCGGCAAGCTTATGAAA+TGG | - | chr2_3:48884051-48884070 | Msa0296040:intron | 35.0% | |
| AATTCTTAGCAATGAATGCC+AGG | - | chr2_3:48884177-48884196 | Msa0296040:intron | 35.0% | |
| !! | TTTTCTGGAAATAAGCCTAC+TGG | + | chr2_3:48884210-48884229 | None:intergenic | 35.0% |
| ! | AAAGATCTTGATAGTCCTTG+CGG | + | chr2_3:48884236-48884255 | None:intergenic | 35.0% |
| GGACTATCAAGATCTTTCAT+TGG | - | chr2_3:48884239-48884258 | Msa0296040:intron | 35.0% | |
| TATCAAGATCTTTCATTGGC+AGG | - | chr2_3:48884243-48884262 | Msa0296040:intron | 35.0% | |
| CTGTAGCTTCTACTATAGAA+AGG | + | chr2_3:48884401-48884420 | None:intergenic | 35.0% | |
| ! | TCTCATTAAGATTTTCCTCG+GGG | + | chr2_3:48884441-48884460 | None:intergenic | 35.0% |
| ! | CTCTCATTAAGATTTTCCTC+GGG | + | chr2_3:48884442-48884461 | None:intergenic | 35.0% |
| TATAGCCCTGTTATACTTTC+AGG | + | chr2_3:48884492-48884511 | None:intergenic | 35.0% | |
| GACATCTATTCAATGTTCAC+AGG | + | chr2_3:48884561-48884580 | None:intergenic | 35.0% | |
| GAAACCTATACATGAAAGCA+GGG | + | chr2_3:48884731-48884750 | None:intergenic | 35.0% | |
| AGAAACCTATACATGAAAGC+AGG | + | chr2_3:48884732-48884751 | None:intergenic | 35.0% | |
| TCTATTAGAGCAAGTTGCTA+CGG | - | chr2_3:48884749-48884768 | Msa0296040:intron | 35.0% | |
| TTGAAATGAGCTATCCTCTT+AGG | - | chr2_3:48885058-48885077 | Msa0296040:intron | 35.0% | |
| TGAAATGAGCTATCCTCTTA+GGG | - | chr2_3:48885059-48885078 | Msa0296040:intron | 35.0% | |
| ACTTTGGCTAAGAAAAAGGA+AGG | - | chr2_3:48885183-48885202 | Msa0296040:intron | 35.0% | |
| GAATGCTATTGAACATAAGC+TGG | + | chr2_3:48885229-48885248 | None:intergenic | 35.0% | |
| !! | ATCTAGAGTGTTACTTGTGT+TGG | - | chr2_3:48885268-48885287 | Msa0296040:intron | 35.0% |
| ATCTGCATACAATTCATGCA+TGG | + | chr2_3:48885335-48885354 | None:intergenic | 35.0% | |
| ATGTGGATTTGATAGAGGAA+TGG | - | chr2_3:48885443-48885462 | Msa0296040:intron | 35.0% | |
| GTTCGTCAGTTTGATGTTAT+TGG | - | chr2_3:48885465-48885484 | Msa0296040:intron | 35.0% | |
| GTTTCCTTTCAACAGGATAA+AGG | + | chr2_3:48885589-48885608 | None:intergenic | 35.0% | |
| AACAACCATCATCCTCAAAA+TGG | - | chr2_3:48885917-48885936 | Msa0296040:CDS | 35.0% | |
| ! | TCAAAGAATGCAGTTGTTTC+TGG | - | chr2_3:48885946-48885965 | Msa0296040:CDS | 35.0% |
| !! | CAAAGAATGCAGTTGTTTCT+GGG | - | chr2_3:48885947-48885966 | Msa0296040:CDS | 35.0% |
| TGTTTACATCCGAAGAATCT+AGG | + | chr2_3:48886085-48886104 | None:intergenic | 35.0% | |
| AAGGGATGGATGAGTTCATT+GGG | + | chr2_3:48880988-48881007 | None:intergenic | 40.0% | |
| AAAGGTAAATACGGTGCGTT+TGG | - | chr2_3:48881205-48881224 | Msa0296040:CDS | 40.0% | |
| GCGACAATAGAGGAAAATTC+AGG | - | chr2_3:48881600-48881619 | Msa0296040:intron | 40.0% | |
| AGAGGAAAATTCAGGAGTGA+AGG | - | chr2_3:48881608-48881627 | Msa0296040:intron | 40.0% | |
| ! | TTTTCCTTTCTGTGAAGCAC+CGG | - | chr2_3:48881695-48881714 | Msa0296040:CDS | 40.0% |
| CATTATTACCGACGGAAAGT+TGG | + | chr2_3:48881885-48881904 | None:intergenic | 40.0% | |
| TTCGCTAATTGAGAAGCTGA+AGG | - | chr2_3:48882022-48882041 | Msa0296040:CDS | 40.0% | |
| !!! | TGAGAAGCTGAAGGTGTTTT+TGG | - | chr2_3:48882031-48882050 | Msa0296040:CDS | 40.0% |
| !!! | GTGTTTTTGGCGTCTGAAAT+TGG | - | chr2_3:48882044-48882063 | Msa0296040:CDS | 40.0% |
| TGTTATGGGAGATTACGTGT+TGG | - | chr2_3:48882167-48882186 | Msa0296040:CDS | 40.0% | |
| GTTATGGGAGATTACGTGTT+GGG | - | chr2_3:48882168-48882187 | Msa0296040:CDS | 40.0% | |
| TGAAGACTTATGATGTTGGC+CGG | - | chr2_3:48882239-48882258 | Msa0296040:intron | 40.0% | |
| ! | AATGTGAAGACTGGTTGATC+CGG | + | chr2_3:48882384-48882403 | None:intergenic | 40.0% |
| CTTGCTAGAAGAATAACCGA+TGG | + | chr2_3:48882509-48882528 | None:intergenic | 40.0% | |
| ATGTTGTGCAAAGTAGGTAG+CGG | + | chr2_3:48882866-48882885 | None:intergenic | 40.0% | |
| GTAGTGATGTTGTGCAAAGT+AGG | + | chr2_3:48882872-48882891 | None:intergenic | 40.0% | |
| TTTATAATCTGGGCCATGCA+TGG | - | chr2_3:48882894-48882913 | Msa0296040:CDS | 40.0% | |
| TTATTTCGGTGAAGGGGAAA+GGG | - | chr2_3:48883027-48883046 | Msa0296040:intron | 40.0% | |
| TAGCAGTGAAAAGCCTAACA+GGG | + | chr2_3:48883108-48883127 | None:intergenic | 40.0% | |
| ATAGCAGTGAAAAGCCTAAC+AGG | + | chr2_3:48883109-48883128 | None:intergenic | 40.0% | |
| TAAAGAACATCAAGTGGGAG+GGG | - | chr2_3:48883135-48883154 | Msa0296040:CDS | 40.0% | |
| CTTCCTCTTTCTCATTCTCT+AGG | + | chr2_3:48883179-48883198 | None:intergenic | 40.0% | |
| CTAGAGAATGAGAAAGAGGA+AGG | - | chr2_3:48883177-48883196 | Msa0296040:intron | 40.0% | |
| TTTAAAGGTCCTGTGGTTCA+GGG | + | chr2_3:48883209-48883228 | None:intergenic | 40.0% | |
| ! | AACCACAGGACCTTTAAAGA+GGG | - | chr2_3:48883211-48883230 | Msa0296040:intron | 40.0% |
| !!! | TTTTTTACCTCTGGTGCCAA+AGG | + | chr2_3:48883272-48883291 | None:intergenic | 40.0% |
| !! | TACGAGGTTGATACACCATT+TGG | + | chr2_3:48883522-48883541 | None:intergenic | 40.0% |
| TTTATTGACAGCTAGCCACT+GGG | - | chr2_3:48883667-48883686 | Msa0296040:intron | 40.0% | |
| !! | TGACTTTGATGATGGTGATG+AGG | - | chr2_3:48883776-48883795 | Msa0296040:intron | 40.0% |
| !! | GACTTTGATGATGGTGATGA+GGG | - | chr2_3:48883777-48883796 | Msa0296040:intron | 40.0% |
| GAAGTATGCGTCTTCTAAAC+AGG | + | chr2_3:48883815-48883834 | None:intergenic | 40.0% | |
| AAGACGCATACTTCTTCAAG+AGG | - | chr2_3:48883821-48883840 | Msa0296040:intron | 40.0% | |
| AGCAGCGTCTATTTCACATA+GGG | + | chr2_3:48883887-48883906 | None:intergenic | 40.0% | |
| TAGCAGCGTCTATTTCACAT+AGG | + | chr2_3:48883888-48883907 | None:intergenic | 40.0% | |
| ACAACACAAGGACAAAATGG+CGG | + | chr2_3:48883955-48883974 | None:intergenic | 40.0% | |
| TGGATGCTGTGTTGAATGAA+TGG | - | chr2_3:48883999-48884018 | Msa0296040:intron | 40.0% | |
| CTGTGTTGAATGAATGGCAA+AGG | - | chr2_3:48884005-48884024 | Msa0296040:intron | 40.0% | |
| TGAATGGCAAAGGACTATCA+TGG | - | chr2_3:48884015-48884034 | Msa0296040:intron | 40.0% | |
| ATTTCCAGAAAACTACCGCA+AGG | - | chr2_3:48884218-48884237 | Msa0296040:intron | 40.0% | |
| TGATTCAGAAGCAAGGACAT+GGG | + | chr2_3:48884352-48884371 | None:intergenic | 40.0% | |
| ATGATTCAGAAGCAAGGACA+TGG | + | chr2_3:48884353-48884372 | None:intergenic | 40.0% | |
| TAGTAGAAGCTACAGAAGAG+AGG | - | chr2_3:48884406-48884425 | Msa0296040:intron | 40.0% | |
| ! | CTCATTAAGATTTTCCTCGG+GGG | + | chr2_3:48884440-48884459 | None:intergenic | 40.0% |
| ! | CAAGTCTTATCAGACATGAG+AGG | + | chr2_3:48884583-48884602 | None:intergenic | 40.0% |
| ! | TGTGGTGGGAGTTTACAAAT+CGG | - | chr2_3:48884784-48884803 | Msa0296040:intron | 40.0% |
| ATATGATCGACAAGGAGCAA+GGG | + | chr2_3:48884980-48884999 | None:intergenic | 40.0% | |
| GTGTTTCCATATGATCGACA+AGG | + | chr2_3:48884988-48885007 | None:intergenic | 40.0% | |
| !! | AGCATTGAACTCTCTTTTGC+AGG | + | chr2_3:48885092-48885111 | None:intergenic | 40.0% |
| TGGCTAAGAAAAAGGAAGGA+AGG | - | chr2_3:48885187-48885206 | Msa0296040:intron | 40.0% | |
| ATTACTGCTCACAGTTGGAA+CGG | + | chr2_3:48885367-48885386 | None:intergenic | 40.0% | |
| ! | CACATAGCAGTTGATATCTC+AGG | + | chr2_3:48885428-48885447 | None:intergenic | 40.0% |
| CTGAGATATCAACTGCTATG+TGG | - | chr2_3:48885426-48885445 | Msa0296040:intron | 40.0% | |
| CTGCTATGTGGATTTGATAG+AGG | - | chr2_3:48885438-48885457 | Msa0296040:intron | 40.0% | |
| TGCCCAACTTATTTAGTAGG+AGG | + | chr2_3:48885532-48885551 | None:intergenic | 40.0% | |
| GTACCCTTTATCCTGTTGAA+AGG | - | chr2_3:48885582-48885601 | Msa0296040:intron | 40.0% | |
| !!! | ATCCTTTTTCGACGAGCTTT+GGG | + | chr2_3:48886033-48886052 | None:intergenic | 40.0% |
| !!! | AATCCTTTTTCGACGAGCTT+TGG | + | chr2_3:48886034-48886053 | None:intergenic | 40.0% |
| CTCGTCGAAAAAGGATTGTA+CGG | - | chr2_3:48886037-48886056 | Msa0296040:CDS | 40.0% | |
| TGATACTGCTGTATTGTCCT+TGG | - | chr2_3:48886143-48886162 | Msa0296040:CDS | 40.0% | |
| GATGGGGACGGAAAAAATTT+GGG | + | chr2_3:48886208-48886227 | None:intergenic | 40.0% | |
| TGATGGGGACGGAAAAAATT+TGG | + | chr2_3:48886209-48886228 | None:intergenic | 40.0% | |
| !! | AATATTGTAGGTGATGGGGA+CGG | + | chr2_3:48886220-48886239 | None:intergenic | 40.0% |
| !! | AAGTCTCTTTGGGATTGGGT+TGG | - | chr2_3:48880800-48880819 | Msa0296040:three_prime_UTR | 45.0% |
| GAGAGGAAGGAGAAGAAGAT+AGG | + | chr2_3:48880842-48880861 | None:intergenic | 45.0% | |
| ATTGTTGAGAGTGGAGAGGA+AGG | + | chr2_3:48880855-48880874 | None:intergenic | 45.0% | |
| CTGAATTGTTGAGAGTGGAG+AGG | + | chr2_3:48880859-48880878 | None:intergenic | 45.0% | |
| GAAGGGATGGATGAGTTCAT+TGG | + | chr2_3:48880989-48881008 | None:intergenic | 45.0% | |
| !! | AGGGAAGGGTTTTGGTGATA+AGG | + | chr2_3:48881017-48881036 | None:intergenic | 45.0% |
| ACCACGATCGGATAACAAGA+CGG | + | chr2_3:48881069-48881088 | None:intergenic | 45.0% | |
| GGAAATATCGCTGTCGACAT+CGG | + | chr2_3:48881104-48881123 | None:intergenic | 45.0% | |
| TTAATGTTACCGGAAGCGGA+AGG | + | chr2_3:48881175-48881194 | None:intergenic | 45.0% | |
| CGGATTAATGTTACCGGAAG+CGG | + | chr2_3:48881179-48881198 | None:intergenic | 45.0% | |
| CGCTTCCGGTAACATTAATC+CGG | - | chr2_3:48881177-48881196 | Msa0296040:CDS | 45.0% | |
| CTTCGATTTCTCGAGCGTAA+CGG | + | chr2_3:48881233-48881252 | None:intergenic | 45.0% | |
| ACGACTTGTCAGTGCTTCAT+AGG | + | chr2_3:48881535-48881554 | None:intergenic | 45.0% | |
| ACATGTAACGGCGACAATAG+AGG | - | chr2_3:48881590-48881609 | Msa0296040:intron | 45.0% | |
| !! | TATGTGTTTGGTGTCTGTGC+CGG | + | chr2_3:48881717-48881736 | None:intergenic | 45.0% |
| TTACACAAACACGTCGACAC+TGG | - | chr2_3:48881738-48881757 | Msa0296040:CDS | 45.0% | |
| !! | CATATTTGTCGGTGTCGTGT+TGG | - | chr2_3:48881793-48881812 | Msa0296040:intron | 45.0% |
| ! | CGTGTTGGTATCAGAAGTGA+AGG | - | chr2_3:48881808-48881827 | Msa0296040:intron | 45.0% |
| !! | CAGAAGTGAAGGTGCTACAA+AGG | - | chr2_3:48881819-48881838 | Msa0296040:intron | 45.0% |
| TGTGCAAATGTGTGCATGCT+TGG | - | chr2_3:48881945-48881964 | Msa0296040:intron | 45.0% | |
| TTGGGTTAAACGTGTTGCCT+TGG | - | chr2_3:48882124-48882143 | Msa0296040:CDS | 45.0% | |
| TTGGGTTAAACGTGTTGCCT+TGG | - | chr2_3:48882124-48882143 | Msa0296040:CDS | 45.0% | |
| GCCTTGGACACGTAAAATTG+CGG | - | chr2_3:48882202-48882221 | Msa0296040:CDS | 45.0% | |
| ! | ACCGCAATTTTACGTGTCCA+AGG | + | chr2_3:48882206-48882225 | None:intergenic | 45.0% |
| CCTGTTTCATGTCACGAAAC+CGG | + | chr2_3:48882261-48882280 | None:intergenic | 45.0% | |
| !! | CTTGTGTGAAGTATCGTGTC+CGG | - | chr2_3:48882362-48882381 | Msa0296040:CDS | 45.0% |
| ACACGCATCATCAATGCCAT+CGG | - | chr2_3:48882490-48882509 | Msa0296040:intron | 45.0% | |
| TGCAGGATTATCACCGATGT+AGG | + | chr2_3:48882561-48882580 | None:intergenic | 45.0% | |
| TGTTGTGCAAAGTAGGTAGC+GGG | + | chr2_3:48882865-48882884 | None:intergenic | 45.0% | |
| CTTTCCCCTTCACCGAAATA+AGG | + | chr2_3:48883028-48883047 | None:intergenic | 45.0% | |
| CTTATTTCGGTGAAGGGGAA+AGG | - | chr2_3:48883026-48883045 | Msa0296040:intron | 45.0% | |
| TATTTCGGTGAAGGGGAAAG+GGG | - | chr2_3:48883028-48883047 | Msa0296040:intron | 45.0% | |
| AAAGAACATCAAGTGGGAGG+GGG | - | chr2_3:48883136-48883155 | Msa0296040:CDS | 45.0% | |
| GGTCCTAGAGAATGAGAAAG+AGG | - | chr2_3:48883173-48883192 | Msa0296040:intron | 45.0% | |
| TTAAAGGTCCTGTGGTTCAG+GGG | + | chr2_3:48883208-48883227 | None:intergenic | 45.0% | |
| ! | CTTTAAAGGTCCTGTGGTTC+AGG | + | chr2_3:48883210-48883229 | None:intergenic | 45.0% |
| ! | GAACCACAGGACCTTTAAAG+AGG | - | chr2_3:48883210-48883229 | Msa0296040:intron | 45.0% |
| ! | ACCACAGGACCTTTAAAGAG+GGG | - | chr2_3:48883212-48883231 | Msa0296040:intron | 45.0% |
| ! | AGGACCTTTAAAGAGGGGAA+GGG | - | chr2_3:48883217-48883236 | Msa0296040:intron | 45.0% |
| !! | CTTTGTTTCTCTGGGACCTT+TGG | - | chr2_3:48883253-48883272 | Msa0296040:intron | 45.0% |
| AGCATTCCCACTTATTGGGA+AGG | - | chr2_3:48883339-48883358 | Msa0296040:CDS | 45.0% | |
| CAGGTGTGTTGCATACAGTA+TGG | + | chr2_3:48883561-48883580 | None:intergenic | 45.0% | |
| TACTGTATGCAACACACCTG+TGG | - | chr2_3:48883561-48883580 | Msa0296040:intron | 45.0% | |
| CTTTATTGACAGCTAGCCAC+TGG | - | chr2_3:48883666-48883685 | Msa0296040:intron | 45.0% | |
| TTATTGACAGCTAGCCACTG+GGG | - | chr2_3:48883668-48883687 | Msa0296040:intron | 45.0% | |
| !! | ATCAGTTATGGTGGTGGTGA+TGG | - | chr2_3:48883717-48883736 | Msa0296040:intron | 45.0% |
| !! | GGTGATGGAGGTGATGATAA+TGG | - | chr2_3:48883732-48883751 | Msa0296040:intron | 45.0% |
| AAAATGGCGGTCATTCCTTC+AGG | + | chr2_3:48883942-48883961 | None:intergenic | 45.0% | |
| !! | GCCATTTTGTCCTTGTGTTG+TGG | - | chr2_3:48883954-48883973 | Msa0296040:intron | 45.0% |
| GCCACAACACAAGGACAAAA+TGG | + | chr2_3:48883958-48883977 | None:intergenic | 45.0% | |
| CAAATAGCTGCCACAACACA+AGG | + | chr2_3:48883967-48883986 | None:intergenic | 45.0% | |
| ACTATCATGGATTTGCCTGC+TGG | - | chr2_3:48884028-48884047 | Msa0296040:intron | 45.0% | |
| TGGATTTGCCTGCTGGATTT+CGG | - | chr2_3:48884035-48884054 | Msa0296040:intron | 45.0% | |
| GAAATAAGCCTACTGGCAGT+TGG | + | chr2_3:48884203-48884222 | None:intergenic | 45.0% | |
| ! | TAGTCCTTGCGGTAGTTTTC+TGG | + | chr2_3:48884225-48884244 | None:intergenic | 45.0% |
| GATTCAGAAGCAAGGACATG+GGG | + | chr2_3:48884351-48884370 | None:intergenic | 45.0% | |
| CAGACCCTGCTTTCATGTAT+AGG | - | chr2_3:48884724-48884743 | Msa0296040:intron | 45.0% | |
| TTAGAGCAAGTTGCTACGGT+AGG | - | chr2_3:48884753-48884772 | Msa0296040:intron | 45.0% | |
| AACAACAACGGCATTGCATG+CGG | + | chr2_3:48884953-48884972 | None:intergenic | 45.0% | |
| ! | CATGCAATGCCGTTGTTGTT+TGG | - | chr2_3:48884953-48884972 | Msa0296040:intron | 45.0% |
| AGCAAGGGACCAAACAACAA+CGG | + | chr2_3:48884965-48884984 | None:intergenic | 45.0% | |
| CATATGATCGACAAGGAGCA+AGG | + | chr2_3:48884981-48885000 | None:intergenic | 45.0% | |
| CTTGCTCCTTGTCGATCATA+TGG | - | chr2_3:48884979-48884998 | Msa0296040:intron | 45.0% | |
| TGCAGGTCAAATTCCCTAAG+AGG | + | chr2_3:48885075-48885094 | None:intergenic | 45.0% | |
| GGGTGCATTGTCAAACACTT+TGG | - | chr2_3:48885167-48885186 | Msa0296040:intron | 45.0% | |
| ! | AAAAAGGAAGGAAGGTGTGC+AGG | - | chr2_3:48885195-48885214 | Msa0296040:intron | 45.0% |
| ! | AAAAGGAAGGAAGGTGTGCA+GGG | - | chr2_3:48885196-48885215 | Msa0296040:intron | 45.0% |
| AGTGCATTACTGCTCACAGT+TGG | + | chr2_3:48885372-48885391 | None:intergenic | 45.0% | |
| ACTGTGAGCAGTAATGCACT+TGG | - | chr2_3:48885372-48885391 | Msa0296040:intron | 45.0% | |
| AGCAGTAATGCACTTGGCTA+TGG | - | chr2_3:48885378-48885397 | Msa0296040:intron | 45.0% | |
| ! | CTTGGCTATGGTGCTTTTCT+TGG | - | chr2_3:48885390-48885409 | Msa0296040:intron | 45.0% |
| TGTTCTTCAGCACAGCATTC+AGG | - | chr2_3:48885496-48885515 | Msa0296040:intron | 45.0% | |
| AGTTCATCTGACTGAGCTAG+TGG | + | chr2_3:48885862-48885881 | None:intergenic | 45.0% | |
| !! | AATGCAGTTGTTTCTGGGCT+TGG | - | chr2_3:48885952-48885971 | Msa0296040:CDS | 45.0% |
| GTCTCTTGGGCATCAAACAA+GGG | - | chr2_3:48885974-48885993 | Msa0296040:CDS | 45.0% | |
| GAAAAAGGTTGCTGCTGGAT+CGG | - | chr2_3:48886059-48886078 | Msa0296040:CDS | 45.0% | |
| TACTGCTGTATTGTCCTTGG+TGG | - | chr2_3:48886146-48886165 | Msa0296040:CDS | 45.0% | |
| ! | GTATTGTCCTTGGTGGTTTC+TGG | - | chr2_3:48886153-48886172 | Msa0296040:CDS | 45.0% |
| GAAGAAGATAGGCCCATGGA+GGG | + | chr2_3:48880831-48880850 | None:intergenic | 50.0% | |
| AGAAGAAGATAGGCCCATGG+AGG | + | chr2_3:48880832-48880851 | None:intergenic | 50.0% | |
| AGGAGAAGAAGATAGGCCCA+TGG | + | chr2_3:48880835-48880854 | None:intergenic | 50.0% | |
| GAGACGACATCGTTTAGGGA+TGG | + | chr2_3:48880937-48880956 | None:intergenic | 50.0% | |
| GCGTGAGACGACATCGTTTA+GGG | + | chr2_3:48880941-48880960 | None:intergenic | 50.0% | |
| GGATGGATGAGTTCATTGGG+AGG | + | chr2_3:48880985-48881004 | None:intergenic | 50.0% | |
| ! | GGGAGTTTAGGGAAGGGTTT+TGG | + | chr2_3:48881025-48881044 | None:intergenic | 50.0% |
| AGGAGAGGGAGTTTAGGGAA+GGG | + | chr2_3:48881031-48881050 | None:intergenic | 50.0% | |
| TACGGAGGAGAGGGAGTTTA+GGG | + | chr2_3:48881036-48881055 | None:intergenic | 50.0% | |
| TTACGGAGGAGAGGGAGTTT+AGG | + | chr2_3:48881037-48881056 | None:intergenic | 50.0% | |
| ACGATCGGATAACAAGACGG+CGG | + | chr2_3:48881066-48881085 | None:intergenic | 50.0% | |
| AATATCGCTGTCGACATCGG+CGG | + | chr2_3:48881101-48881120 | None:intergenic | 50.0% | |
| GTCGACAGCGATATTTCCTC+CGG | - | chr2_3:48881106-48881125 | Msa0296040:CDS | 50.0% | |
| AAGTAACAAGTCTGCGCCTG+AGG | - | chr2_3:48881273-48881292 | Msa0296040:CDS | 50.0% | |
| CCGGTTTCGTGACATGAAAC+AGG | - | chr2_3:48882258-48882277 | Msa0296040:intron | 50.0% | |
| GGACACGTTATTGCTGATGC+AGG | + | chr2_3:48882578-48882597 | None:intergenic | 50.0% | |
| ! | TTGTGCAAAGTAGGTAGCGG+GGG | + | chr2_3:48882863-48882882 | None:intergenic | 50.0% |
| GTTGTGCAAAGTAGGTAGCG+GGG | + | chr2_3:48882864-48882883 | None:intergenic | 50.0% | |
| !! | CTGGTTGCGGTGCCTTATTT+CGG | - | chr2_3:48883013-48883032 | Msa0296040:intron | 50.0% |
| !! | CGGTGCCTTATTTCGGTGAA+GGG | - | chr2_3:48883020-48883039 | Msa0296040:intron | 50.0% |
| !! | GGTGCCTTATTTCGGTGAAG+GGG | - | chr2_3:48883021-48883040 | Msa0296040:intron | 50.0% |
| AAGGTGAGGAAGTCCCTGTT+AGG | - | chr2_3:48883092-48883111 | Msa0296040:CDS | 50.0% | |
| AGGAATATCCCCTGAACCAC+AGG | - | chr2_3:48883197-48883216 | Msa0296040:intron | 50.0% | |
| ! | TCCCCTCTTTAAAGGTCCTG+TGG | + | chr2_3:48883216-48883235 | None:intergenic | 50.0% |
| ! | CAGGACCTTTAAAGAGGGGA+AGG | - | chr2_3:48883216-48883235 | Msa0296040:intron | 50.0% |
| ! | GGACCTTTAAAGAGGGGAAG+GGG | - | chr2_3:48883218-48883237 | Msa0296040:intron | 50.0% |
| CCAATGGTATGAGTAGCCAC+AGG | + | chr2_3:48883580-48883599 | None:intergenic | 50.0% | |
| CCTGTGGCTACTCATACCAT+TGG | - | chr2_3:48883577-48883596 | Msa0296040:intron | 50.0% | |
| TATTGACAGCTAGCCACTGG+GGG | - | chr2_3:48883669-48883688 | Msa0296040:intron | 50.0% | |
| !! | AGTTATGGTGGTGGTGATGG+AGG | - | chr2_3:48883720-48883739 | Msa0296040:intron | 50.0% |
| ! | GATGGTGATGAGGGAGATGA+AGG | - | chr2_3:48883786-48883805 | Msa0296040:intron | 50.0% |
| TAAGCTTGCCGAAATCCAGC+AGG | + | chr2_3:48884046-48884065 | None:intergenic | 50.0% | |
| ! | CTTGGTTAGCTCAGCCCAAA+TGG | - | chr2_3:48884151-48884170 | Msa0296040:intron | 50.0% |
| ! | AGATTTTCCTCGGGGGACAA+TGG | + | chr2_3:48884433-48884452 | None:intergenic | 50.0% |
| !! | GTGCATGGTTGGTTTAAGCG+CGG | - | chr2_3:48885134-48885153 | Msa0296040:intron | 50.0% |
| !! | TGCATGGTTGGTTTAAGCGC+GGG | - | chr2_3:48885135-48885154 | Msa0296040:intron | 50.0% |
| !! | TGTTTCTGGGCTTGGTCTCT+TGG | - | chr2_3:48885960-48885979 | Msa0296040:CDS | 50.0% |
| ! | GTTTCTGGGCTTGGTCTCTT+GGG | - | chr2_3:48885961-48885980 | Msa0296040:CDS | 50.0% |
| GGTCTCTTGGGCATCAAACA+AGG | - | chr2_3:48885973-48885992 | Msa0296040:CDS | 50.0% | |
| CAAGGGAATGCAGATGTGTC+TGG | - | chr2_3:48885991-48886010 | Msa0296040:CDS | 50.0% | |
| CTCCCAAAGCTCGTCGAAAA+AGG | - | chr2_3:48886028-48886047 | Msa0296040:CDS | 50.0% | |
| GTACGGAAAAAGGTTGCTGC+TGG | - | chr2_3:48886054-48886073 | Msa0296040:CDS | 50.0% | |
| CTGGATCGGCCTAGATTCTT+CGG | - | chr2_3:48886073-48886092 | Msa0296040:CDS | 50.0% | |
| !! | TGGGTTGGTTGATCCCTCCA+TGG | - | chr2_3:48880815-48880834 | Msa0296040:three_prime_UTR | 55.0% |
| !! | GGGTTGGTTGATCCCTCCAT+GGG | - | chr2_3:48880816-48880835 | Msa0296040:three_prime_UTR | 55.0% |
| CGCGTGAGACGACATCGTTT+AGG | + | chr2_3:48880942-48880961 | None:intergenic | 55.0% | |
| GAGGAGAGGGAGTTTAGGGA+AGG | + | chr2_3:48881032-48881051 | None:intergenic | 55.0% | |
| GGATAACAAGACGGCGGTGA+CGG | + | chr2_3:48881060-48881079 | None:intergenic | 55.0% | |
| ! | GCCGTCTTGTTATCCGATCG+TGG | - | chr2_3:48881065-48881084 | Msa0296040:exon | 55.0% |
| ATATCGCTGTCGACATCGGC+GGG | + | chr2_3:48881100-48881119 | None:intergenic | 55.0% | |
| GAAACACCGTTCAAGCAGCG+AGG | + | chr2_3:48881134-48881153 | None:intergenic | 55.0% | |
| TGAACGGTGTTTCGCTGCTC+CGG | - | chr2_3:48881141-48881160 | Msa0296040:CDS | 55.0% | |
| ATGTTACCGGAAGCGGAAGG+AGG | + | chr2_3:48881172-48881191 | None:intergenic | 55.0% | |
| ! | TGTGCCGGTGCTTCACAGAA+AGG | + | chr2_3:48881702-48881721 | None:intergenic | 55.0% |
| GAACCGCAAACTGCCATGCA+TGG | + | chr2_3:48882910-48882929 | None:intergenic | 55.0% | |
| AGGAGCTCAGCTCACAGTTG+TGG | + | chr2_3:48882981-48883000 | None:intergenic | 55.0% | |
| !! | GCGGTGCCTTATTTCGGTGA+AGG | - | chr2_3:48883019-48883038 | Msa0296040:intron | 55.0% |
| CCTCCCCTTCCCCTCTTTAA+AGG | + | chr2_3:48883224-48883243 | None:intergenic | 55.0% | |
| ! | CCTTTAAAGAGGGGAAGGGG+AGG | - | chr2_3:48883221-48883240 | Msa0296040:intron | 55.0% |
| ATTGACAGCTAGCCACTGGG+GGG | - | chr2_3:48883670-48883689 | Msa0296040:intron | 55.0% | |
| GGTGATGAGGGAGATGAAGG+TGG | - | chr2_3:48883789-48883808 | Msa0296040:intron | 55.0% | |
| CAAGGCTGCTGAGTTGTGCA+TGG | - | chr2_3:48885119-48885138 | Msa0296040:intron | 55.0% | |
| GCTGCTGAGTTGTGCATGGT+TGG | - | chr2_3:48885123-48885142 | Msa0296040:intron | 55.0% | |
| TTTAAGCGCGGGTGCAGTAC+AGG | - | chr2_3:48885146-48885165 | Msa0296040:intron | 55.0% | |
| TTAAGCGCGGGTGCAGTACA+GGG | - | chr2_3:48885147-48885166 | Msa0296040:intron | 55.0% | |
| GAGAGACTTCCAAACGTGCC+TGG | - | chr2_3:48885818-48885837 | Msa0296040:intron | 55.0% | |
| ACTTCCAAACGTGCCTGGCT+TGG | - | chr2_3:48885823-48885842 | Msa0296040:intron | 55.0% | |
| AACTCCAAGCCAGGCACGTT+TGG | + | chr2_3:48885830-48885849 | None:intergenic | 55.0% | |
| ATCTGCCTCAACTCCAAGCC+AGG | + | chr2_3:48885839-48885858 | None:intergenic | 55.0% | |
| !! | TGGTTTCTGGCTGCTGCTCT+AGG | - | chr2_3:48886166-48886185 | Msa0296040:CDS | 55.0% |
| !! | TTTCTGGCTGCTGCTCTAGG+AGG | - | chr2_3:48886169-48886188 | Msa0296040:CDS | 55.0% |
| !! | TTCTGGCTGCTGCTCTAGGA+GGG | - | chr2_3:48886170-48886189 | Msa0296040:CDS | 55.0% |
| ! | GGTGACGGTTACGGAGGAGA+GGG | + | chr2_3:48881045-48881064 | None:intergenic | 60.0% |
| ! | CAAGACGGCGGTGACGGTTA+CGG | + | chr2_3:48881054-48881073 | None:intergenic | 60.0% |
| TTCAAGCAGCGAGGAACCGG+AGG | + | chr2_3:48881125-48881144 | None:intergenic | 60.0% | |
| CCGTTCAAGCAGCGAGGAAC+CGG | + | chr2_3:48881128-48881147 | None:intergenic | 60.0% | |
| CCGGTTCCTCGCTGCTTGAA+CGG | - | chr2_3:48881125-48881144 | Msa0296040:CDS | 60.0% | |
| GGGCCATGCATGGCAGTTTG+CGG | - | chr2_3:48882904-48882923 | Msa0296040:CDS | 60.0% | |
| TCGGTGAAGGGGAAAGGGGT+AGG | - | chr2_3:48883032-48883051 | Msa0296040:intron | 60.0% | |
| CGGTGAAGGGGAAAGGGGTA+GGG | - | chr2_3:48883033-48883052 | Msa0296040:intron | 60.0% | |
| GGTGAAGGGGAAAGGGGTAG+GGG | - | chr2_3:48883034-48883053 | Msa0296040:intron | 60.0% | |
| ACATCAAGTGGGAGGGGGAG+AGG | - | chr2_3:48883141-48883160 | Msa0296040:CDS | 60.0% | |
| TGGGAGGGGGAGAGGAAAGA+GGG | - | chr2_3:48883149-48883168 | Msa0296040:CDS | 60.0% | |
| ! | TCTGGGACCTTTGGCACCAG+AGG | - | chr2_3:48883262-48883281 | Msa0296040:intron | 60.0% |
| TTGACAGCTAGCCACTGGGG+GGG | - | chr2_3:48883671-48883690 | Msa0296040:intron | 60.0% | |
| ATGCCAGGCCAACTGCCAGT+AGG | - | chr2_3:48884192-48884211 | Msa0296040:intron | 60.0% | |
| AAGCCTACTGGCAGTTGGCC+TGG | + | chr2_3:48884198-48884217 | None:intergenic | 60.0% | |
| CTACGGTAGGCTGCTCTGTG+TGG | - | chr2_3:48884766-48884785 | Msa0296040:intron | 60.0% | |
| GGTAGGCTGCTCTGTGTGGT+GGG | - | chr2_3:48884770-48884789 | Msa0296040:intron | 60.0% | |
| CATTGCATGCGGCTGCAGTG+AGG | + | chr2_3:48884942-48884961 | None:intergenic | 60.0% | |
| !! | ACGTGCCTGGCTTGGAGTTG+AGG | - | chr2_3:48885831-48885850 | Msa0296040:intron | 60.0% |
| GCAGCAGCCAGAAACCACCA+AGG | + | chr2_3:48886163-48886182 | None:intergenic | 60.0% | |
| !! | TCTGGCTGCTGCTCTAGGAG+GGG | - | chr2_3:48886171-48886190 | Msa0296040:CDS | 60.0% |
| ! | CGGTGACGGTTACGGAGGAG+AGG | + | chr2_3:48881046-48881065 | None:intergenic | 65.0% |
| CGGGAGAAGCGGACCACGAT+CGG | + | chr2_3:48881081-48881100 | None:intergenic | 65.0% | |
| GTCGACATCGGCGGGAGAAG+CGG | + | chr2_3:48881092-48881111 | None:intergenic | 65.0% | |
| GCGGGGGCAGGACACTAAGA+AGG | + | chr2_3:48882847-48882866 | None:intergenic | 65.0% | |
| !! | GCAAAGTAGGTAGCGGGGGC+AGG | + | chr2_3:48882859-48882878 | None:intergenic | 65.0% |
| AGGGGAAAGGGGTAGGGGAG+AGG | - | chr2_3:48883039-48883058 | Msa0296040:intron | 65.0% | |
| GTGGGAGGGGGAGAGGAAAG+AGG | - | chr2_3:48883148-48883167 | Msa0296040:CDS | 65.0% | |
| GAGGGGGAGAGGAAAGAGGG+AGG | - | chr2_3:48883152-48883171 | Msa0296040:CDS | 65.0% | |
| TGACAGCTAGCCACTGGGGG+GGG | - | chr2_3:48883672-48883691 | Msa0296040:intron | 65.0% | |
| !! | GGGGGGGGTGGTGGAGATAT+TGG | - | chr2_3:48883687-48883706 | Msa0296040:intron | 65.0% |
| GAGAGGACCATTGTCCCCCG+AGG | - | chr2_3:48884423-48884442 | Msa0296040:intron | 65.0% | |
| CGGTAGGCTGCTCTGTGTGG+TGG | - | chr2_3:48884769-48884788 | Msa0296040:intron | 65.0% | |
| ! | GACGGCGGTGACGGTTACGG+AGG | + | chr2_3:48881051-48881070 | None:intergenic | 70.0% |
| ACCGGAAGCGGAAGGAGGCG+CGG | + | chr2_3:48881167-48881186 | None:intergenic | 70.0% | |
| ATCTCCACCACCCCCCCCAG+TGG | + | chr2_3:48883685-48883704 | None:intergenic | 70.0% | |
| ! | GAAGCGGAAGGAGGCGCGGC+CGG | + | chr2_3:48881163-48881182 | None:intergenic | 75.0% |
| GCCGCGCCTCCTTCCGCTTC+CGG | - | chr2_3:48881163-48881182 | Msa0296040:CDS | 75.0% | |
| CAGCTAGCCACTGGGGGGGG+TGG | - | chr2_3:48883675-48883694 | Msa0296040:intron | 75.0% | |
| CTAGCCACTGGGGGGGGTGG+TGG | - | chr2_3:48883678-48883697 | Msa0296040:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 48880798 | 48886360 | 48880798 | ID=Msa0296040;Name=Msa0296040 |
| chr2_3 | mRNA | 48880798 | 48886360 | 48880798 | ID=Msa0296040-mRNA-1;Parent=Msa0296040;Name=Msa0296040-mRNA-1;_AED=0.08;_eAED=0.08;_QI=149|1|1|1|1|1|8|274|526 |
| chr2_3 | exon | 48880798 | 48881360 | 48880798 | ID=Msa0296040-mRNA-1:exon:15382;Parent=Msa0296040-mRNA-1 |
| chr2_3 | exon | 48881641 | 48881805 | 48881641 | ID=Msa0296040-mRNA-1:exon:15381;Parent=Msa0296040-mRNA-1 |
| chr2_3 | exon | 48881950 | 48882255 | 48881950 | ID=Msa0296040-mRNA-1:exon:15380;Parent=Msa0296040-mRNA-1 |
| chr2_3 | exon | 48882344 | 48882442 | 48882344 | ID=Msa0296040-mRNA-1:exon:15379;Parent=Msa0296040-mRNA-1 |
| chr2_3 | exon | 48882894 | 48883009 | 48882894 | ID=Msa0296040-mRNA-1:exon:15378;Parent=Msa0296040-mRNA-1 |
| chr2_3 | exon | 48883086 | 48883178 | 48883086 | ID=Msa0296040-mRNA-1:exon:15377;Parent=Msa0296040-mRNA-1 |
| chr2_3 | exon | 48883316 | 48883480 | 48883316 | ID=Msa0296040-mRNA-1:exon:15376;Parent=Msa0296040-mRNA-1 |
| chr2_3 | exon | 48885864 | 48886360 | 48885864 | ID=Msa0296040-mRNA-1:exon:15375;Parent=Msa0296040-mRNA-1 |
| chr2_3 | five_prime_UTR | 48886212 | 48886360 | 48886212 | ID=Msa0296040-mRNA-1:five_prime_utr;Parent=Msa0296040-mRNA-1 |
| chr2_3 | CDS | 48885864 | 48886211 | 48885864 | ID=Msa0296040-mRNA-1:cds;Parent=Msa0296040-mRNA-1 |
| chr2_3 | CDS | 48883316 | 48883480 | 48883316 | ID=Msa0296040-mRNA-1:cds;Parent=Msa0296040-mRNA-1 |
| chr2_3 | CDS | 48883086 | 48883178 | 48883086 | ID=Msa0296040-mRNA-1:cds;Parent=Msa0296040-mRNA-1 |
| chr2_3 | CDS | 48882894 | 48883009 | 48882894 | ID=Msa0296040-mRNA-1:cds;Parent=Msa0296040-mRNA-1 |
| chr2_3 | CDS | 48882344 | 48882442 | 48882344 | ID=Msa0296040-mRNA-1:cds;Parent=Msa0296040-mRNA-1 |
| chr2_3 | CDS | 48881950 | 48882255 | 48881950 | ID=Msa0296040-mRNA-1:cds;Parent=Msa0296040-mRNA-1 |
| chr2_3 | CDS | 48881641 | 48881805 | 48881641 | ID=Msa0296040-mRNA-1:cds;Parent=Msa0296040-mRNA-1 |
| chr2_3 | CDS | 48881072 | 48881360 | 48881072 | ID=Msa0296040-mRNA-1:cds;Parent=Msa0296040-mRNA-1 |
| chr2_3 | three_prime_UTR | 48880798 | 48881071 | 48880798 | ID=Msa0296040-mRNA-1:three_prime_utr;Parent=Msa0296040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
