AlfalfaGEDB | Msa0333860

M. sativa cultivar zhongmu-4 / Msa0333860

KEGG: -
GO: -
PFAM: PF11891.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0333860	XP_003596481.1	99.049	526	5	0	1	526	1	526	0.0	1063

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0333860	sp\|Q8RWG3\|RER6_ARATH	26.168	321	207	9	173	474	418	727	3.00e-17	89.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0216840	Msa0333860	0.847479	1.127150e-59	-8.615850e-47
Msa0296040	Msa0333860	0.900589	6.300686e-78	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0333860	MtrunA17_Chr2g0318431	99.049	526	5	0	1	526	1	526	0.0	1063
Msa0333860	MtrunA17_Chr7g0240091	29.680	219	138	5	241	445	225	441	2.89e-18	87.4
Msa0333860	MtrunA17_Chr3g0114241	28.287	251	159	6	173	408	426	670	5.53e-17	84.3
Msa0333860	MtrunA17_Chr2g0320711	21.992	241	174	3	179	410	155	390	3.62e-13	71.6
Msa0333860	MtrunA17_Chr3g0090071	26.554	177	124	2	238	408	164	340	4.12e-12	68.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0333860	AT5G24690.1	66.729	538	147	10	3	526	2	521	0.0	617
Msa0333860	AT3G56140.2	25.392	319	212	7	173	474	199	508	1.22e-18	89.4
Msa0333860	AT3G56140.1	26.168	321	207	9	173	474	418	727	3.05e-18	89.0
Msa0333860	AT3G56140.3	26.168	321	207	9	173	474	418	727	3.05e-18	89.0
Msa0333860	AT2G40400.2	25.692	253	165	4	173	409	409	654	2.39e-17	85.9
Msa0333860	AT2G40400.1	25.692	253	165	4	173	409	409	654	2.39e-17	85.9
Msa0333860	AT2G40400.3	25.703	249	162	4	173	405	409	650	3.38e-16	82.0
Msa0333860	AT5G22790.1	28.019	207	136	5	241	434	209	415	9.56e-16	80.1
Msa0333860	AT2G37860.3	27.222	180	122	2	241	411	209	388	5.97e-15	77.4
Msa0333860	AT2G37860.4	27.222	180	122	2	241	411	209	388	5.97e-15	77.4

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Find 169 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACTTTGGCTAAGAAAA+AGG	0.291899	2_4:+51938274	Msa0333860:CDS
AAAGATCTTGATAGTCCTTG+CGG	0.654748	2_4:-51937328	None:intergenic
AAAGGTAAATACGGTGCGTT+TGG	0.441403	2_4:+51934302	Msa0333860:CDS
AACAACAACGGCATTGCATG+CGG	0.610056	2_4:-51938045	None:intergenic
AACAACCATCATCCTCAAAA+TGG	0.398226	2_4:+51939014	Msa0333860:CDS
AACATTAATCCGGTTATGAA+AGG	0.530557	2_4:+51934284	Msa0333860:CDS
AACTCCAAGCCAGGCACGTT+TGG	0.323970	2_4:-51938924	None:intergenic
AACTCTTGAAAGTTTACAAC+AGG	0.411065	2_4:+51938975	Msa0333860:CDS
AAGAACTGAATTGTTGAGAG+TGG	0.574354	2_4:-51933958	None:intergenic
AAGACGCATACTTCTTCAAG+AGG	0.549712	2_4:+51936916	Msa0333860:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAGAGAGAAAGTGAAAAA+CGG	-	chr2_4:51933997-51934016	None:intergenic	30.0%
AACATTAATCCGGTTATGAA+AGG	+	chr2_4:51934284-51934303	Msa0333860:CDS	30.0%
AAAGAAATATGACAAACCTC+AGG	-	chr2_4:51934389-51934408	None:intergenic	30.0%
GATCATTTCTTCAATTCAAC+AGG	-	chr2_4:51934478-51934497	None:intergenic	30.0%
TGTTTACGGTACAATCAATT+AGG	+	chr2_4:51934521-51934540	Msa0333860:intron	30.0%
TTATTAAACTTCAGTGGCTT+AGG	+	chr2_4:51934586-51934605	Msa0333860:intron	30.0%
GTCGTTATAATCGTGAAAAA+TGG	+	chr2_4:51934647-51934666	Msa0333860:intron	30.0%
TTGAATGCAATCACATGTAA+CGG	+	chr2_4:51934675-51934694	Msa0333860:intron	30.0%
TGTTTGTGTAAGTATGTGTT+TGG	-	chr2_4:51934826-51934845	None:intergenic	30.0%
TTATGCAAGATGTGTTGTAT+TGG	+	chr2_4:51935072-51935091	Msa0333860:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	51933895	51939453	51933895	ID=Msa0333860;Name=Msa0333860
chr2_4	mRNA	51933895	51939453	51933895	ID=Msa0333860-mRNA-1;Parent=Msa0333860;Name=Msa0333860-mRNA-1;_AED=0.08;_eAED=0.08;_QI=149\|1\|1\|1\|1\|1\|8\|270\|526
chr2_4	exon	51933895	51934391	51933895	ID=Msa0333860-mRNA-1:exon:15587;Parent=Msa0333860-mRNA-1
chr2_4	exon	51936773	51936937	51936773	ID=Msa0333860-mRNA-1:exon:15588;Parent=Msa0333860-mRNA-1
chr2_4	exon	51937075	51937167	51937075	ID=Msa0333860-mRNA-1:exon:15589;Parent=Msa0333860-mRNA-1
chr2_4	exon	51937244	51937359	51937244	ID=Msa0333860-mRNA-1:exon:15590;Parent=Msa0333860-mRNA-1
chr2_4	exon	51937811	51937909	51937811	ID=Msa0333860-mRNA-1:exon:15591;Parent=Msa0333860-mRNA-1
chr2_4	exon	51937998	51938303	51937998	ID=Msa0333860-mRNA-1:exon:15592;Parent=Msa0333860-mRNA-1
chr2_4	exon	51938448	51938612	51938448	ID=Msa0333860-mRNA-1:exon:15593;Parent=Msa0333860-mRNA-1
chr2_4	exon	51938895	51939453	51938895	ID=Msa0333860-mRNA-1:exon:15594;Parent=Msa0333860-mRNA-1
chr2_4	five_prime_UTR	51933895	51934043	51933895	ID=Msa0333860-mRNA-1:five_prime_utr;Parent=Msa0333860-mRNA-1
chr2_4	CDS	51934044	51934391	51934044	ID=Msa0333860-mRNA-1:cds;Parent=Msa0333860-mRNA-1
chr2_4	CDS	51936773	51936937	51936773	ID=Msa0333860-mRNA-1:cds;Parent=Msa0333860-mRNA-1
chr2_4	CDS	51937075	51937167	51937075	ID=Msa0333860-mRNA-1:cds;Parent=Msa0333860-mRNA-1
chr2_4	CDS	51937244	51937359	51937244	ID=Msa0333860-mRNA-1:cds;Parent=Msa0333860-mRNA-1
chr2_4	CDS	51937811	51937909	51937811	ID=Msa0333860-mRNA-1:cds;Parent=Msa0333860-mRNA-1
chr2_4	CDS	51937998	51938303	51937998	ID=Msa0333860-mRNA-1:cds;Parent=Msa0333860-mRNA-1
chr2_4	CDS	51938448	51938612	51938448	ID=Msa0333860-mRNA-1:cds;Parent=Msa0333860-mRNA-1
chr2_4	CDS	51938895	51939183	51938895	ID=Msa0333860-mRNA-1:cds;Parent=Msa0333860-mRNA-1
chr2_4	three_prime_UTR	51939184	51939453	51939184	ID=Msa0333860-mRNA-1:three_prime_utr;Parent=Msa0333860-mRNA-1

Gene Sequence

>Msa0333860

ATGTCGTCTCACGCGCTGTTTCAAGCAGCGCAAATCCTCCCAATGAACTCATCCATCCCTTCTAAAACCTTATCACCAAAACCCTTCCCTAAACTCCCTCTCCTCCGTAACCGTCACCGCCGTCTTGTTATCCGATCGTGGTCCGCTTCTCCCGCCGATGTCGACAGCGATATTTCCTCCGGTTCCTCGCTGCTTGAACGGTGTTTCGCTGCTCCGGCCGCGCCTCCTTCCGCTTCCGGTAACATTAATCCGGTTATGAAAGGTAAATACGGTGCGTTTGGTGCCGTTACGCTCGAGAAATCGAAGCTTGAAATATCGCAACAGCAAAGTAACAAGTCTGCGCCTGAGCTAGCCACTGGGGGGGGTGGTGGAGATATTGGAAAGATAATCAGTTATGGTGGTGGTGATGGAGGTGATGATAATGGTGATGACGACGACTACTTTGATGACTTTGATGATGGTGATGAGGGAGATGAAGGTGGCCTGTTTAGAAGACGCATACTTCTTCAAGAGCTATTTGACCGTAAATTTGTGGATGCTGTGTTGAATGAATGGCAAAGGACTATCATGGATTTGCCTGCTGGATTTCGGCAAGCTTATGAAATGGGCTTGGTTAGCTCAGCCCAAATGGTGAAATTCTTAGCAATGAATGCCAGGCCAACTGCCAGTAGGCTTATTTCCAGAAAACTACCGCAAGGACTATCAAGATCTTTCATTGGCAGGATGCTTGCAGACCCTGCTTTCATGTATAGGTTTCTATTAGAGCAAGTTGCTACGGTAGGCTGCTCTGTGTGGTGGGAGTTTACAAATCGGAAAGATAGGATTAAGCAAGAGTGGGATCTTGCACTTATCAATGTCCTCACTGCAGCCGCATGCAATGCCGTTGTTGTTTGGTCCCTTGCTCCTTGTCGATCATATGGAAACACATTTCAATTTGATTTACAAAATACACTGCAGAAGCTTCCAAACAACATATTTGAAATGAGCTATCCTCTTAGGGAATTTGACCTGCAAAAGAGAGTTCAATGCTTTTTGTTCAAGGCTGCTGAGTTGTGCATGGTTGGTTTAAGCGCGGGTGCAGTACAGGGTGCATTGTCAAACACTTTGGCTAAGAAAAAGGAAGGAAGATTATCTGTAACCGTTCCAACTGTGAGCAGTAATGCACTTGGCTATGGTGCTTTTCTTGGAATCTATGCTAACCTGAGATATCAACTGCTATGTGGATTTGATAGAGGAATGGTTCGTCAGTTTGATGTTATTGGAGTTGCATTGTTCTTCAGCACAGCATTCAGGGTGTTAAACGTTCAACTGGGAGAGACTTCCAAACGTGCCTGGCTTGGAGTTGAGGCAGATCCACTAGCTCAGTCAGATGAACTCTTGAAAGTTTACAACAGGACTTCTGAAAATGTAGAACAACCATCATCCTCAAAATGGTTTATATCAAAGAATGCAGTTGTTTCTGGGCTTGGTCTCTTGGGCATCAAACAAGGGAATGCAGATGTGTCTGGTGCAGAATCTTCAGCTCCCAAAGCTCGTCGAAAAAGGATTGTACGGAAAAAGGTTGCTGCTGGATCGGCCTAG

Protein sequence

>Msa0333860

MSSHALFQAAQILPMNSSIPSKTLSPKPFPKLPLLRNRHRRLVIRSWSASPADVDSDISSGSSLLERCFAAPAAPPSASGNINPVMKGKYGAFGAVTLEKSKLEISQQQSNKSAPELATGGGGGDIGKIISYGGGDGGDDNGDDDDYFDDFDDGDEGDEGGLFRRRILLQELFDRKFVDAVLNEWQRTIMDLPAGFRQAYEMGLVSSAQMVKFLAMNARPTASRLISRKLPQGLSRSFIGRMLADPAFMYRFLLEQVATVGCSVWWEFTNRKDRIKQEWDLALINVLTAAACNAVVVWSLAPCRSYGNTFQFDLQNTLQKLPNNIFEMSYPLREFDLQKRVQCFLFKAAELCMVGLSAGAVQGALSNTLAKKKEGRLSVTVPTVSSNALGYGAFLGIYANLRYQLLCGFDRGMVRQFDVIGVALFFSTAFRVLNVQLGETSKRAWLGVEADPLAQSDELLKVYNRTSENVEQPSSSKWFISKNAVVSGLGLLGIKQGNADVSGAESSAPKARRKRIVRKKVAAGSA*