AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0296120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296120 MtrunA17_Chr2g0318561 99.394 495 3 0 223 717 2 496 0.0 1021
Msa0296120 MtrunA17_Chr8g0360821 68.903 611 129 6 164 715 63 671 0.0 867
Msa0296120 MtrunA17_Chr7g0218341 50.778 514 236 6 201 710 206 706 1.11e-175 519
Msa0296120 MtrunA17_Chr2g0326871 37.876 499 288 10 208 700 177 659 1.13e-104 335
Msa0296120 MtrunA17_Chr4g0028861 39.785 465 263 9 208 667 224 676 3.09e-104 333
Msa0296120 MtrunA17_Chr3g0139071 39.121 478 269 11 211 679 181 645 8.28e-99 320
Msa0296120 MtrunA17_Chr3g0126541 32.698 630 350 14 60 668 58 634 1.09e-97 317
Msa0296120 MtrunA17_Chr3g0125651 37.764 474 269 9 211 671 139 599 3.15e-97 315
Msa0296120 MtrunA17_Chr2g0305771 37.980 495 282 11 211 696 151 629 1.24e-96 313
Msa0296120 MtrunA17_Chr1g0158861 31.967 610 320 14 154 698 74 653 4.18e-95 310
Msa0296120 MtrunA17_Chr1g0181121 37.393 468 274 8 208 669 144 598 5.15e-95 309
Msa0296120 MtrunA17_Chr4g0073941 37.580 471 264 12 211 668 203 656 9.17e-94 307
Msa0296120 MtrunA17_Chr4g0001481 35.546 467 282 9 211 668 205 661 2.15e-88 293
Msa0296120 MtrunA17_Chr7g0228181 36.688 477 284 11 211 678 147 614 2.38e-88 291
Msa0296120 MtrunA17_Chr7g0275581 35.593 472 272 8 211 668 187 640 4.19e-88 291
Msa0296120 MtrunA17_Chr8g0347121 32.800 500 287 10 211 671 164 653 1.91e-80 271
Msa0296120 MtrunA17_Chr6g0481021 34.864 479 289 8 211 676 227 695 4.13e-78 264
Msa0296120 MtrunA17_Chr6g0480851 33.659 511 307 10 178 673 255 748 6.34e-77 262
Msa0296120 MtrunA17_Chr6g0480781 29.630 513 325 11 178 673 240 733 9.02e-75 257
Msa0296120 MtrunA17_Chr6g0480671 35.318 487 275 12 211 678 297 762 1.58e-69 242
Msa0296120 MtrunA17_Chr6g0480741 29.020 510 324 13 178 670 186 674 1.77e-58 210
Msa0296120 MtrunA17_Chr6g0480681 29.955 444 273 12 244 672 280 700 1.82e-49 185
Msa0296120 MtrunA17_Chr2g0318551 63.277 177 8 4 14 135 1 175 3.91e-45 160
Msa0296120 MtrunA17_Chr2g0318551 49.351 154 12 4 139 227 27 179 2.09e-30 119
Msa0296120 MtrunA17_Chr5g0395421 32.961 358 207 8 305 649 18 355 7.05e-40 151
Msa0296120 MtrunA17_Chr6g0480771 33.333 249 146 6 433 669 12 252 5.68e-32 125
Msa0296120 MtrunA17_Chr6g0480841 36.181 199 110 5 487 673 2 195 6.77e-26 106
Msa0296120 MtrunA17_Chr2g0326861 30.357 168 105 3 208 374 40 196 5.24e-21 92.4
Msa0296120 MtrunA17_Chr5g0395411 29.771 131 88 2 178 306 230 358 4.14e-15 77.8
Msa0296120 MtrunA17_Chr6g0480821 20.455 176 126 3 224 397 25 188 5.22e-12 66.2
Msa0296120 MtrunA17_Chr2g0326851 38.462 91 52 2 610 700 3 89 4.18e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296120 AT5G54250.2 75.810 525 123 3 192 715 171 692 0.0 824
Msa0296120 AT5G54250.1 75.810 525 123 3 192 715 171 692 0.0 824
Msa0296120 AT5G54250.4 75.810 525 123 3 192 715 171 692 0.0 824
Msa0296120 AT5G54250.3 74.857 525 123 4 192 715 171 687 0.0 807
Msa0296120 AT5G15410.2 41.512 648 329 10 75 710 112 721 5.19e-157 472
Msa0296120 AT5G15410.1 41.512 648 329 10 75 710 113 722 7.62e-157 471
Msa0296120 AT2G28260.2 34.926 607 335 14 75 671 28 584 5.57e-108 342
Msa0296120 AT2G28260.1 34.926 607 335 14 75 671 68 624 8.22e-108 343
Msa0296120 AT5G57940.1 39.662 474 259 11 211 671 192 651 1.26e-99 322
Msa0296120 AT5G57940.2 39.662 474 259 11 211 671 192 651 1.26e-99 322
Msa0296120 AT5G57940.3 39.662 474 259 11 211 671 185 644 1.39e-99 322
Msa0296120 AT2G24610.1 38.365 477 274 11 211 679 178 642 3.62e-98 319
Msa0296120 AT2G24610.2 38.365 477 274 11 211 679 193 657 1.40e-97 318
Msa0296120 AT5G53130.1 38.116 467 262 10 211 668 188 636 1.08e-95 312
Msa0296120 AT2G23980.6 38.125 480 271 10 211 677 180 646 1.66e-95 311
Msa0296120 AT2G23980.9 38.125 480 271 10 211 677 207 673 3.00e-95 311
Msa0296120 AT2G23980.10 38.125 480 271 10 211 677 207 673 3.00e-95 311
Msa0296120 AT2G23980.1 38.125 480 271 10 211 677 207 673 3.00e-95 311
Msa0296120 AT2G23980.4 38.125 480 271 10 211 677 207 673 3.00e-95 311
Msa0296120 AT2G23980.5 38.125 480 271 10 211 677 207 673 3.00e-95 311
Msa0296120 AT1G01340.2 36.235 494 284 9 211 698 172 640 3.02e-95 310
Msa0296120 AT1G01340.1 36.235 494 284 9 211 698 167 635 3.67e-95 310
Msa0296120 AT4G30360.1 37.238 478 279 9 211 680 179 643 5.58e-95 310
Msa0296120 AT1G15990.1 37.657 478 264 11 211 671 195 655 8.32e-95 310
Msa0296120 AT1G19780.1 37.447 470 276 10 211 671 201 661 5.06e-94 308
Msa0296120 AT4G01010.1 35.758 495 286 10 211 698 172 641 6.98e-94 306
Msa0296120 AT4G01010.2 35.758 495 286 10 211 698 172 641 6.98e-94 306
Msa0296120 AT4G30560.5 37.866 478 274 11 211 677 181 646 9.02e-94 306
Msa0296120 AT4G30560.2 37.866 478 274 11 211 677 181 646 9.02e-94 306
Msa0296120 AT4G30560.3 37.866 478 274 11 211 677 181 646 9.02e-94 306
Msa0296120 AT4G30560.1 37.866 478 274 11 211 677 207 672 1.34e-93 307
Msa0296120 AT4G30560.4 37.866 478 274 11 211 677 207 672 1.34e-93 307
Msa0296120 AT5G14870.1 37.238 478 281 11 211 679 143 610 5.10e-93 305
Msa0296120 AT1G19780.2 38.391 435 253 8 245 671 23 450 4.04e-92 297
Msa0296120 AT3G48010.1 36.632 475 275 9 211 671 148 610 1.14e-90 298
Msa0296120 AT2G23980.3 36.382 503 271 11 211 677 207 696 4.88e-90 298
Msa0296120 AT2G23980.2 36.382 503 271 11 211 677 207 696 4.88e-90 298
Msa0296120 AT2G23980.8 36.382 503 271 11 211 677 207 696 4.88e-90 298
Msa0296120 AT2G23980.7 36.382 503 271 11 211 677 207 696 4.88e-90 298
Msa0296120 AT2G46430.1 35.223 494 285 12 211 697 176 641 4.26e-85 283
Msa0296120 AT2G46430.2 35.223 494 285 12 211 697 176 641 4.26e-85 283
Msa0296120 AT3G17690.1 33.663 505 306 13 178 671 229 715 7.64e-79 267
Msa0296120 AT3G17700.1 36.481 466 269 10 211 665 296 745 2.20e-77 264
Msa0296120 AT2G46450.2 32.845 478 276 15 211 671 110 559 6.23e-69 238
Msa0296120 AT2G46450.3 32.845 478 276 15 211 671 97 546 9.66e-69 237
Msa0296120 AT2G46450.4 32.845 478 276 15 211 671 133 582 1.18e-68 238
Msa0296120 AT2G46450.1 32.845 478 276 15 211 671 133 582 1.18e-68 238
Msa0296120 AT3G17690.2 33.254 421 261 10 178 595 229 632 4.65e-66 230
Msa0296120 AT3G17700.2 37.113 388 227 8 211 597 296 667 1.07e-65 230
Msa0296120 AT2G46440.1 32.008 503 290 15 211 697 133 599 3.05e-59 211
Msa0296120 AT2G46440.2 32.569 436 255 10 275 697 12 421 6.93e-56 197
Msa0296120 AT3G17690.3 30.333 300 194 7 178 474 229 516 4.92e-37 146
Msa0296120 AT5G37500.4 24.651 215 155 5 392 603 261 471 4.17e-14 76.6
Msa0296120 AT5G37500.2 24.766 214 154 5 393 603 262 471 5.53e-14 76.3
Msa0296120 AT5G37500.1 24.766 214 154 5 393 603 262 471 5.79e-14 76.3
Msa0296120 AT5G37500.3 24.766 214 154 5 393 603 208 417 6.65e-14 75.9
Msa0296120 AT3G02850.3 21.860 215 161 5 393 604 279 489 6.40e-12 69.3
Msa0296120 AT3G02850.1 21.963 214 160 5 393 603 279 488 8.19e-12 69.3
Msa0296120 AT3G02850.2 21.963 214 160 5 393 603 279 488 9.10e-12 68.9

Find 142 sgRNAs with CRISPR-Local

Find 457 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTACAACAGTCGAAGTATT+TGG 0.199388 2_3:+48986288 Msa0296120:CDS
GGTGATGTTGTCAGCACTTT+TGG 0.210717 2_3:+48985151 Msa0296120:intron
AGATACTCCTTCCTATCTTT+TGG 0.215218 2_3:+48984233 Msa0296120:CDS
AAACATAAACGCTCCTCTTT+TGG 0.223814 2_3:+48980365 Msa0296120:CDS
AAACATAAACGCTCCTCTTT+TGG 0.223814 2_3:+48981613 Msa0296120:CDS
CTTCTAGTCACTATGCTAAT+TGG 0.241612 2_3:+48985241 Msa0296120:CDS
TTTGTCAAGGTCCACTTCTT+TGG 0.250073 2_3:+48986630 Msa0296120:CDS
TATCAAGTACCATCTTTGTT+TGG 0.281982 2_3:+48985807 Msa0296120:CDS
AGTGCTGATAACTATGAATT+TGG 0.287072 2_3:+48984160 Msa0296120:CDS
TGAGTTCTTTGTCCTTTATT+CGG 0.292219 2_3:+48986596 Msa0296120:CDS
GATAAAGATGTTAAAGAAAA+AGG 0.300042 2_3:-48980441 None:intergenic
GATAAAGATGTTAAAGAAAA+AGG 0.300042 2_3:-48981689 None:intergenic
GTTGGAAGACGTTCTATAAA+TGG 0.307863 2_3:-48986243 None:intergenic
GGCTGCTGTGGCAATTCAAT+TGG 0.324383 2_3:+48986543 Msa0296120:CDS
ATCAAGTACCATCTTTGTTT+GGG 0.333486 2_3:+48985808 Msa0296120:CDS
TAACTCCATCTCTTAGGAAT+TGG 0.337128 2_3:-48986152 None:intergenic
ACTCACCTGGTTGGAGAACT+TGG 0.342981 2_3:+48986521 Msa0296120:CDS
AGGGTCATGTTGGTATTTGT+TGG 0.347194 2_3:+48983958 Msa0296120:CDS
TTATAGTTTCCATAGTATAT+TGG 0.355926 2_3:-48984064 None:intergenic
GTACCATCTTTGTTTGGGTT+TGG 0.357835 2_3:+48985813 Msa0296120:CDS
TCATCTCCACTGAAGTTTCC+TGG 0.360097 2_3:-48986195 None:intergenic
GAGTCAAAATCATCTTGATT+TGG 0.362918 2_3:-48986700 None:intergenic
AAATCATCTTGATTTGGCTT+TGG 0.367402 2_3:-48986694 None:intergenic
TGCAAAGAACCAATATACTA+TGG 0.378037 2_3:+48984055 Msa0296120:CDS
TAGACAGAACAAGGTTGGTT+TGG 0.386399 2_3:+48984101 Msa0296120:CDS
ATGAATTTGGAGTTTATGAA+TGG 0.394019 2_3:+48984173 Msa0296120:CDS
GGGTCATGTTGGTATTTGTT+GGG 0.397628 2_3:+48983959 Msa0296120:CDS
ACAAATAGCATTCTACGAAC+TGG 0.398087 2_3:-48986105 None:intergenic
AATTGGCTTGGAGAAGGTAT+AGG 0.400107 2_3:+48986560 Msa0296120:CDS
CAATTAGCATAGTGACTAGA+AGG 0.401970 2_3:-48985240 None:intergenic
TACTTGATCCAAGAGGAAAA+TGG 0.403260 2_3:+48980141 Msa0296120:CDS
TACTTGATCCAAGAGGAAAA+TGG 0.403260 2_3:+48981389 Msa0296120:CDS
TTAGGAATTGGCTACTTTGA+AGG 0.405487 2_3:-48986140 None:intergenic
TCTTCATAACATCGTGTTTG+TGG 0.412923 2_3:+48986721 Msa0296120:exon
GGCTTTGTTGGCTTTGAAGA+AGG 0.425788 2_3:-48980420 None:intergenic
GGCTTTGTTGGCTTTGAAGA+AGG 0.425788 2_3:-48981668 None:intergenic
AAACTTGAGTGATGTTGATC+GGG 0.429397 2_3:-48979924 None:intergenic
AGGCCTACGAGGCCGAATAA+AGG 0.432529 2_3:-48986608 None:intergenic
TCCAACATCATCATCGACTT+TGG 0.439571 2_3:+48986260 Msa0296120:CDS
TTGTTTGGGTTTGGTGAGAC+AGG 0.441635 2_3:+48985822 Msa0296120:CDS
CCATCCTTTCTGTTGTACTC+TGG 0.448749 2_3:-48985180 None:intergenic
ACTTGATCCAAGAGGAAAAT+GGG 0.451152 2_3:+48980142 Msa0296120:CDS
ACTTGATCCAAGAGGAAAAT+GGG 0.451152 2_3:+48981390 Msa0296120:CDS
GTTAAAAGTTGTTGTATGCT+AGG 0.457056 2_3:+48986171 Msa0296120:CDS
GTCATTAGGCCCCAAAAGAT+AGG 0.457093 2_3:-48984244 None:intergenic
GTAGAATGCTATTTGTGGTA+AGG 0.461877 2_3:+48986112 Msa0296120:CDS
TTTGGGGCCTAATGACTCTC+AGG 0.466761 2_3:+48984251 Msa0296120:CDS
GAAATTAGACAGAACAAGGT+TGG 0.478036 2_3:+48984096 Msa0296120:CDS
CTGTGGCAATTCAATTGGCT+TGG 0.478572 2_3:+48986548 Msa0296120:CDS
GAGGAAAATGGGCTGAAGAA+TGG 0.486947 2_3:+48980153 Msa0296120:CDS
GAGGAAAATGGGCTGAAGAA+TGG 0.486947 2_3:+48981401 Msa0296120:CDS
TTTCTCCCTTTGTGAATACA+AGG 0.489039 2_3:-48985978 None:intergenic
TATCCTCCTCCCTCTCCCTC+AGG 0.489371 2_3:+48980460 Msa0296120:CDS
TATCCTCCTCCCTCTCCCTC+AGG 0.489371 2_3:+48981708 Msa0296120:CDS
CCTTCCTAAAATTTATCACT+CGG 0.489565 2_3:+48983664 Msa0296120:CDS
GTGCGTCGAAACCTCACAAA+TGG 0.493386 2_3:+48983695 Msa0296120:CDS
TCCTTTCTGTTGTACTCTGG+AGG 0.494095 2_3:-48985177 None:intergenic
TAGAATGCTATTTGTGGTAA+GGG 0.494337 2_3:+48986113 Msa0296120:CDS
AGTTCGTAGAATGCTATTTG+TGG 0.494344 2_3:+48986107 Msa0296120:CDS
AAAACTTGAGTGATGTTGAT+CGG 0.495921 2_3:-48979925 None:intergenic
AAGGTCCACTTCTTTGGAAG+AGG 0.502180 2_3:+48986636 Msa0296120:CDS
ATATCCCTTCTCAAACCCTC+CGG 0.502776 2_3:-48985787 None:intergenic
GATCCTTGCTCTAACAAAGA+TGG 0.503367 2_3:-48983593 None:intergenic
TCTATCCTCTTCCAAAGAAG+TGG 0.518250 2_3:-48986641 None:intergenic
GGTATTTGTTGGGACTTCAA+AGG 0.518699 2_3:+48983969 Msa0296120:CDS
TATATGGTGAAACAGGCAGC+AGG 0.520127 2_3:+48983938 Msa0296120:intron
TTACCTGAGGGAGAGGGAGG+AGG 0.520907 2_3:-48980463 None:intergenic
TTACCTGAGGGAGAGGGAGG+AGG 0.520907 2_3:-48981711 None:intergenic
ATGATGAATGAATCCAAAAG+AGG 0.522381 2_3:-48980378 None:intergenic
ATGATGAATGAATCCAAAAG+AGG 0.522381 2_3:-48981626 None:intergenic
TTGGAGAACTTGGGCTGCTG+TGG 0.530447 2_3:+48986531 Msa0296120:CDS
CAATTCAATTGGCTTGGAGA+AGG 0.530721 2_3:+48986554 Msa0296120:CDS
AAGTCCCTTGTATTCACAAA+GGG 0.534584 2_3:+48985973 Msa0296120:CDS
TAACTACGAGAGACAGTGTT+GGG 0.535763 2_3:+48985720 Msa0296120:CDS
TGTCCTTTATTCGGCCTCGT+AGG 0.536746 2_3:+48986605 Msa0296120:CDS
CAAATAGCATTCTACGAACT+GGG 0.537490 2_3:-48986104 None:intergenic
ATTCCATCTTTGTTAGAGCA+AGG 0.537624 2_3:+48983590 Msa0296120:CDS
AGTAGCCAATTCCTAAGAGA+TGG 0.538975 2_3:+48986147 Msa0296120:CDS
TAAATAATTACCTGAGGGAG+AGG 0.541037 2_3:-48980470 None:intergenic
TAAATAATTACCTGAGGGAG+AGG 0.541037 2_3:-48981718 None:intergenic
GAAAATACCTGAGAGTCATT+AGG 0.541685 2_3:-48984258 None:intergenic
GTATTTGTTGGGACTTCAAA+GGG 0.546964 2_3:+48983970 Msa0296120:CDS
CAGTGTTGGGCTGCCATGCG+CGG 0.554243 2_3:+48985733 Msa0296120:CDS
CTTGGAGAAGGTATAGGCAT+AGG 0.554858 2_3:+48986566 Msa0296120:CDS
TTAGATATTACTCACCTGGT+TGG 0.563077 2_3:+48986512 Msa0296120:CDS
CCAGAGTACAACAGAAAGGA+TGG 0.563680 2_3:+48985180 Msa0296120:CDS
GTGGAGATGAACTTCTATCA+TGG 0.565820 2_3:+48986208 Msa0296120:CDS
ATCTTGATTTGGCTTTGGTG+AGG 0.566095 2_3:-48986689 None:intergenic
TCACCAAACCCAAACAAAGA+TGG 0.566389 2_3:-48985816 None:intergenic
CTCACCTGGTTGGAGAACTT+GGG 0.567396 2_3:+48986522 Msa0296120:CDS
TGCATACAGTTAACAAGAGA+AGG 0.570005 2_3:+48986078 Msa0296120:intron
AACACTATTATATTAACTAG+TGG 0.571292 2_3:+48985214 Msa0296120:CDS
ACCAAAGTCGATGATGATGT+TGG 0.573525 2_3:-48986261 None:intergenic
GACGGTTGCCACAAGGACTT+CGG 0.574652 2_3:+48985686 Msa0296120:CDS
ACATTCATCAACGCCGCGCA+TGG 0.577989 2_3:-48985746 None:intergenic
TGTGAGACAACACCTGGTTG+TGG 0.579757 2_3:+48984016 Msa0296120:CDS
TATGCTAATTGGAAACATCA+AGG 0.582197 2_3:+48985252 Msa0296120:CDS
ATCTCCCGGAGGGTTTGAGA+AGG 0.585770 2_3:+48985782 Msa0296120:CDS
TATCCCTTCTCAAACCCTCC+GGG 0.586412 2_3:-48985786 None:intergenic
AGTGTTAGATATTACTCACC+TGG 0.588815 2_3:+48986508 Msa0296120:CDS
AACAGGCAGCAGGGTCATGT+TGG 0.591008 2_3:+48983948 Msa0296120:intron
TAATTACCTGAGGGAGAGGG+AGG 0.593631 2_3:-48980466 None:intergenic
TAATTACCTGAGGGAGAGGG+AGG 0.593631 2_3:-48981714 None:intergenic
AGTTGTTGTATGCTAGGACC+AGG 0.595053 2_3:+48986177 Msa0296120:CDS
ATCGTCGATGTCATCGTCAG+TGG 0.598201 2_3:-48979979 None:intergenic
GGCCTCGTAGGCCTTTGTCA+AGG 0.602074 2_3:+48986617 Msa0296120:CDS
TGAAGAAATTAGACAGAACA+AGG 0.603321 2_3:+48984092 Msa0296120:CDS
AAATAATTACCTGAGGGAGA+GGG 0.607454 2_3:-48980469 None:intergenic
AAATAATTACCTGAGGGAGA+GGG 0.607454 2_3:-48981717 None:intergenic
GTGAGACAACACCTGGTTGT+GGG 0.608869 2_3:+48984017 Msa0296120:CDS
AACAAAAGACGGTTGCCACA+AGG 0.610620 2_3:+48985679 Msa0296120:CDS
TTAGGCCCCAAAAGATAGGA+AGG 0.610853 2_3:-48984240 None:intergenic
AACTTGAGTGATGTTGATCG+GGG 0.611958 2_3:-48979923 None:intergenic
GATAGCGAATCCCCACCAAA+CGG 0.616213 2_3:-48983732 None:intergenic
TCTCCCGGAGGGTTTGAGAA+GGG 0.616232 2_3:+48985783 Msa0296120:CDS
TTCTCCCTTTGTGAATACAA+GGG 0.616802 2_3:-48985977 None:intergenic
AGAGCAAGGATCAATTGCGC+GGG 0.622769 2_3:+48983604 Msa0296120:CDS
CAAGTCCCTTGTATTCACAA+AGG 0.623284 2_3:+48985972 Msa0296120:CDS
GCAGCCCAAGTTCTCCAACC+AGG 0.629666 2_3:-48986526 None:intergenic
CTAGGACCAGGAAACTTCAG+TGG 0.632219 2_3:+48986189 Msa0296120:CDS
ACCTCCAGAGTACAACAGAA+AGG 0.635309 2_3:+48985176 Msa0296120:CDS
AGAATGCTATTTGTGGTAAG+GGG 0.637257 2_3:+48986114 Msa0296120:CDS
TAGAGCAAGGATCAATTGCG+CGG 0.643328 2_3:+48983603 Msa0296120:CDS
GAGCAATGTGAGACAACACC+TGG 0.645036 2_3:+48984010 Msa0296120:CDS
AAAGAAGTGGACCTTGACAA+AGG 0.645468 2_3:-48986628 None:intergenic
ACACGCTGCCGAAGTCCTTG+TGG 0.649012 2_3:-48985694 None:intergenic
AGTGTTCTTAGCCCACAACC+AGG 0.653747 2_3:-48984028 None:intergenic
GAAATTGAAGATGACAAACA+TGG 0.653767 2_3:+48985645 Msa0296120:CDS
AGTATTTGGACTTGAAGCAG+AGG 0.666739 2_3:+48986302 Msa0296120:CDS
GTAACTACGAGAGACAGTGT+TGG 0.672988 2_3:+48985719 Msa0296120:CDS
TGAAGATGACAAACATGGAG+TGG 0.674136 2_3:+48985650 Msa0296120:CDS
GGTCACAGAACACAGAAGCA+AGG 0.678907 2_3:+48984122 Msa0296120:CDS
ATATGGTGAAACAGGCAGCA+GGG 0.685470 2_3:+48983939 Msa0296120:intron
AGATGACAAACATGGAGTGG+TGG 0.685912 2_3:+48985653 Msa0296120:CDS
GACCTTGACAAAGGCCTACG+AGG 0.688299 2_3:-48986619 None:intergenic
CGATAGCGACGAGTACGATG+AGG 0.693290 2_3:+48980025 Msa0296120:CDS
CGACGATATCGTCAACAACG+AGG 0.696721 2_3:+48979995 Msa0296120:CDS
TTAGCATAGTGACTAGAAGG+AGG 0.697558 2_3:-48985237 None:intergenic
AGGGTATTACTTGATCCAAG+AGG 0.706932 2_3:+48980134 Msa0296120:CDS
AGGGTATTACTTGATCCAAG+AGG 0.706932 2_3:+48981382 Msa0296120:CDS
AGTGGTGGATGAACAAAAGA+CGG 0.713345 2_3:+48985668 Msa0296120:CDS
ACTTGAGTGATGTTGATCGG+GGG 0.715749 2_3:-48979922 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTTAGTTAATATACTAA+CGG - chr2_3:48980713-48980732 None:intergenic 10.0%
!! TATATATATATATAAGAGTT+TGG + chr2_3:48980791-48980810 Msa0296120:intron 10.0%
!! AAAAAAAATTCAAAAATTCA+TGG + chr2_3:48981119-48981138 Msa0296120:intron 10.0%
!! AAAAAAATTCAAAAATTCAT+GGG + chr2_3:48981120-48981139 Msa0296120:intron 10.0%
!! AAATGTATTAAGATTAAATT+TGG + chr2_3:48982835-48982854 Msa0296120:intron 10.0%
!! ATAAAACAAATAAAATATGT+TGG - chr2_3:48982964-48982983 None:intergenic 10.0%
!!! TGAAATTTTTAAAATGTATT+TGG + chr2_3:48983518-48983537 Msa0296120:intron 10.0%
!!! AACTTTTTATACTATATATA+TGG + chr2_3:48983922-48983941 Msa0296120:intron 10.0%
!!! AAAAAAAAAACTCTTTTTAT+TGG + chr2_3:48984509-48984528 Msa0296120:intron 10.0%
!!! AAATAAGTATTTTAATTGAA+GGG - chr2_3:48984682-48984701 None:intergenic 10.0%
!! TTCAATTAAAATACTTATTT+GGG + chr2_3:48984682-48984701 Msa0296120:intron 10.0%
!!! TTTTCTTAAAAAAAATTGAA+GGG - chr2_3:48985408-48985427 None:intergenic 10.0%
!!! TTTTTCTTAAAAAAAATTGA+AGG - chr2_3:48985409-48985428 None:intergenic 10.0%
!! GGTAAAAAATAAAATAAATT+GGG - chr2_3:48985856-48985875 None:intergenic 10.0%
!! TGGTAAAAAATAAAATAAAT+TGG - chr2_3:48985857-48985876 None:intergenic 10.0%
!! AATTTAGTTAATATACTAAC+GGG - chr2_3:48980712-48980731 None:intergenic 15.0%
!! TATGATGAATTTATCTATTA+TGG + chr2_3:48980952-48980971 Msa0296120:intron 15.0%
!! TATTATAAACCAACAAAAAA+AGG - chr2_3:48981010-48981029 None:intergenic 15.0%
!!! TTTTTTGTTGGTTTATAATA+TGG + chr2_3:48981010-48981029 Msa0296120:intron 15.0%
!!! TCAATAGAATATTTTATGTA+TGG + chr2_3:48981044-48981063 Msa0296120:intron 15.0%
!! CTATTTATAAGAAGAATATT+TGG - chr2_3:48982038-48982057 None:intergenic 15.0%
!! CAAATATTCTTCTTATAAAT+AGG + chr2_3:48982036-48982055 Msa0296120:intron 15.0%
!!! TAAGCAAAAATCAATTTTTT+AGG - chr2_3:48982189-48982208 None:intergenic 15.0%
!!! TGTGAATTTTGTTATTATAT+TGG + chr2_3:48982376-48982395 Msa0296120:intron 15.0%
!!! TTAAAATTAGTCATCTTTTT+AGG + chr2_3:48982583-48982602 Msa0296120:intron 15.0%
!! AATTTAAAAATATCACTTCT+AGG + chr2_3:48982793-48982812 Msa0296120:intron 15.0%
!! AAAAAATTAAGGGATATTTA+TGG - chr2_3:48982923-48982942 None:intergenic 15.0%
!!! AAGTAGTTTTTTCTTTTTTA+AGG - chr2_3:48983024-48983043 None:intergenic 15.0%
!! TAAATAGACTTATTTGAATT+TGG - chr2_3:48984439-48984458 None:intergenic 15.0%
!!! CAAATAAGTATTTTAATTGA+AGG - chr2_3:48984683-48984702 None:intergenic 15.0%
!! CTTCAATTAAAATACTTATT+TGG + chr2_3:48984681-48984700 Msa0296120:intron 15.0%
!! GTAGAATTAAAAATTATGTT+GGG + chr2_3:48984827-48984846 Msa0296120:intron 15.0%
!!! TTTTTAAGAAAAATGAATCT+TGG + chr2_3:48985416-48985435 Msa0296120:intron 15.0%
!!! CATTTTGATTTTTTTTATGT+TGG + chr2_3:48985572-48985591 Msa0296120:intron 15.0%
!!! TATTTTATTTTTTACCAAAG+AGG + chr2_3:48985860-48985879 Msa0296120:intron 15.0%
!!! ATTTTATTTTTTACCAAAGA+GGG + chr2_3:48985861-48985880 Msa0296120:intron 15.0%
!! TGCATTATTATTATTATTCT+AGG + chr2_3:48986016-48986035 Msa0296120:intron 15.0%
!! GATAAAGATGTTAAAGAAAA+AGG - chr2_3:48980444-48980463 None:intergenic 20.0%
!! AGTTTGTCATTATTCATTAT+TGG + chr2_3:48980522-48980541 Msa0296120:intron 20.0%
!! TGTAAGAATCATATCTATTA+TGG + chr2_3:48980929-48980948 Msa0296120:intron 20.0%
!!! TCTTTAAAGTTGAATTTTGT+AGG + chr2_3:48981068-48981087 Msa0296120:intron 20.0%
!! GATAAAGATGTTAAAGAAAA+AGG - chr2_3:48980444-48980463 None:intergenic 20.0%
!! TATTACATTGTAAATACCAT+TGG + chr2_3:48981784-48981803 Msa0296120:intron 20.0%
!! TATCTTATAAAAAGAACCAA+TGG - chr2_3:48981803-48981822 None:intergenic 20.0%
!! TATGTAAATAATACTCCATT+CGG + chr2_3:48981929-48981948 Msa0296120:intron 20.0%
!! CATTGAGTAAATAATGTATT+TGG - chr2_3:48982253-48982272 None:intergenic 20.0%
!! CCATTATTAAATACTTTATC+CGG - chr2_3:48982310-48982329 None:intergenic 20.0%
!! TAAGAGAAGTAAAATATTGT+GGG - chr2_3:48982346-48982365 None:intergenic 20.0%
!! ATAAGAGAAGTAAAATATTG+TGG - chr2_3:48982347-48982366 None:intergenic 20.0%
!!! AAAGATGACTAATTTTAAGT+GGG - chr2_3:48982581-48982600 None:intergenic 20.0%
!!! AAAAGATGACTAATTTTAAG+TGG - chr2_3:48982582-48982601 None:intergenic 20.0%
!! GAAAAGATTCAAAAACTAAA+AGG + chr2_3:48982681-48982700 Msa0296120:intron 20.0%
!! TTATAGTTTCCATAGTATAT+TGG - chr2_3:48984067-48984086 None:intergenic 20.0%
!!! AACTTCATGATTTTAAATTG+TGG + chr2_3:48984294-48984313 Msa0296120:intron 20.0%
!! TTGGAATATAACAAATTTAG+AGG - chr2_3:48984420-48984439 None:intergenic 20.0%
!!! CACAACATATTTTTTTTGAA+TGG - chr2_3:48984477-48984496 None:intergenic 20.0%
!!! TTAAAATACTTATTTGGGTT+CGG + chr2_3:48984687-48984706 Msa0296120:intron 20.0%
!!! CAACATCTTTTAAATTTACA+AGG - chr2_3:48984714-48984733 None:intergenic 20.0%
!! GGTAGAATTAAAAATTATGT+TGG + chr2_3:48984826-48984845 Msa0296120:intron 20.0%
!! AACACTATTATATTAACTAG+TGG + chr2_3:48985214-48985233 Msa0296120:CDS 20.0%
!! ATTAATCTTGCTAAACAAAA+TGG - chr2_3:48985348-48985367 None:intergenic 20.0%
!!! TTAAACTACTTATTTTTGTC+CGG - chr2_3:48985542-48985561 None:intergenic 20.0%
!!! TTTATGTTGGTGAATATAAT+AGG + chr2_3:48985585-48985604 Msa0296120:intron 20.0%
!!! GAAAAAGATGAACTTTTTTG+TGG - chr2_3:48980107-48980126 None:intergenic 25.0%
!!! TTCATCTTTTTCATTGAGTA+GGG + chr2_3:48980115-48980134 Msa0296120:CDS 25.0%
! ATCCATAAATAATTACCTGA+GGG - chr2_3:48980478-48980497 None:intergenic 25.0%
! ATATATAAGAGTTTGGACTT+TGG + chr2_3:48980798-48980817 Msa0296120:intron 25.0%
!! TTGGAGATTTTTATGCTTTT+TGG + chr2_3:48980845-48980864 Msa0296120:intron 25.0%
!!! TATGCTTTTTGGATGTTTTT+TGG + chr2_3:48980856-48980875 Msa0296120:intron 25.0%
!!! TTTGGATGTTTTTTGGATTT+TGG + chr2_3:48980863-48980882 Msa0296120:intron 25.0%
!!! TGTAAGAATCCTTTTTTTGT+TGG + chr2_3:48980998-48981017 Msa0296120:intron 25.0%
!!! GAAAAAGATGAACTTTTTTG+TGG - chr2_3:48980107-48980126 None:intergenic 25.0%
!!! TTCATCTTTTTCATTGAGTA+GGG + chr2_3:48980115-48980134 Msa0296120:CDS 25.0%
! ATCCATAAATAATTACCTGA+GGG - chr2_3:48980478-48980497 None:intergenic 25.0%
! TGAGTTAACAAAAAATTACG+TGG + chr2_3:48981827-48981846 Msa0296120:intron 25.0%
! TTGTCTCGTATAAAAAGAAT+TGG + chr2_3:48981890-48981909 Msa0296120:intron 25.0%
! CCAAACTTTCTCTTATAAAT+AGG - chr2_3:48981956-48981975 None:intergenic 25.0%
! CCTATTTATAAGAGAAAGTT+TGG + chr2_3:48981953-48981972 Msa0296120:intron 25.0%
! TTCTTATAAATAGGACAAGA+GGG + chr2_3:48982045-48982064 Msa0296120:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + chr2_3:48982288-48982307 Msa0296120:intron 25.0%
!! CCGGATAAAGTATTTAATAA+TGG + chr2_3:48982307-48982326 Msa0296120:intron 25.0%
!! AAAACTAAAAGGACTTGTTT+GGG - chr2_3:48982692-48982711 None:intergenic 25.0%
!! AAAAACTAAAAGGACTTGTT+TGG - chr2_3:48982691-48982710 None:intergenic 25.0%
! GAAACGATTCAAAAACTAAA+AGG - chr2_3:48982479-48982498 None:intergenic 25.0%
!! TTTCAAACAAGTCTTTTTAG+CGG - chr2_3:48982665-48982684 None:intergenic 25.0%
!! AAAAACTAAAAGGACTTGTT+TGG + chr2_3:48982691-48982710 Msa0296120:intron 25.0%
!! AAAACTAAAAGGACTTGTTT+GGG + chr2_3:48982692-48982711 Msa0296120:intron 25.0%
!!! TTAGGACTTTTGAAACTTAA+AGG + chr2_3:48982739-48982758 Msa0296120:intron 25.0%
!! ATTTTGTCTATGTAGATGTT+TGG + chr2_3:48983860-48983879 Msa0296120:intron 25.0%
! TACTATATATATGGTGAAAC+AGG + chr2_3:48983931-48983950 Msa0296120:intron 25.0%
!! ATGAATTTGGAGTTTATGAA+TGG + chr2_3:48984173-48984192 Msa0296120:CDS 25.0%
! TTTACCGTAATATAAAGGTT+TGG - chr2_3:48984352-48984371 None:intergenic 25.0%
!! CACATTTTACCGTAATATAA+AGG - chr2_3:48984357-48984376 None:intergenic 25.0%
! CTTTATATTACGGTAAAATG+TGG + chr2_3:48984355-48984374 Msa0296120:intron 25.0%
! CAACAAATCTTCAATTTAAG+AGG + chr2_3:48984805-48984824 Msa0296120:intron 25.0%
! CAACAAATCTTCAATTTAAG+AGG + chr2_3:48984805-48984824 Msa0296120:intron 25.0%
! ATTCATTTGAGAGAAAAAGT+TGG - chr2_3:48984980-48984999 None:intergenic 25.0%
!!! TCATTCTCACAAAAGTTTTT+TGG + chr2_3:48985130-48985149 Msa0296120:intron 25.0%
! AAGGTACGTAATAATTAACA+AGG + chr2_3:48985271-48985290 Msa0296120:intron 25.0%
! TAATTAACAAGGACTTACTT+AGG + chr2_3:48985282-48985301 Msa0296120:intron 25.0%
!! ATGAATCTTGGTAATTCATT+TGG + chr2_3:48985428-48985447 Msa0296120:intron 25.0%
!! AATGCTTCAAAATCTTGTTT+AGG + chr2_3:48985894-48985913 Msa0296120:intron 25.0%
!! TTTTCAACATATGGATGAAT+TGG + chr2_3:48985924-48985943 Msa0296120:CDS 25.0%
!! AATATGTGACGCAAAATTTT+AGG + chr2_3:48986331-48986350 Msa0296120:CDS 25.0%
! CAAATGTGTACCTAAAATTA+GGG - chr2_3:48986468-48986487 None:intergenic 25.0%
AAAACTTGAGTGATGTTGAT+CGG - chr2_3:48979928-48979947 None:intergenic 30.0%
!! GTTCATCTTTTTCATTGAGT+AGG + chr2_3:48980114-48980133 Msa0296120:CDS 30.0%
! ATGGAATAGAGTTTTTCTTC+TGG + chr2_3:48980172-48980191 Msa0296120:CDS 30.0%
!!! TGTATGTGTCTGTTTTTAGA+TGG + chr2_3:48980257-48980276 Msa0296120:intron 30.0%
!! TGTTACATCTCTGGAATATT+TGG + chr2_3:48980324-48980343 Msa0296120:intron 30.0%
ATGATGAATGAATCCAAAAG+AGG - chr2_3:48980381-48980400 None:intergenic 30.0%
! TCTTTTGGATTCATTCATCA+TGG + chr2_3:48980380-48980399 Msa0296120:CDS 30.0%
! GTTAAAGAAAAAGGCTTTGT+TGG - chr2_3:48980435-48980454 None:intergenic 30.0%
GATCCATAAATAATTACCTG+AGG - chr2_3:48980479-48980498 None:intergenic 30.0%
TTTAACTACCCGTTTCTTTA+TGG + chr2_3:48980641-48980660 Msa0296120:intron 30.0%
! AGTTAATATACTAACGGGTA+CGG - chr2_3:48980707-48980726 None:intergenic 30.0%
GATACTGATACTGATACTTA+GGG - chr2_3:48981297-48981316 None:intergenic 30.0%
TGATACTGATACTGATACTT+AGG - chr2_3:48981298-48981317 None:intergenic 30.0%
!! GTTCATCTTTTTCATTGAGT+AGG + chr2_3:48980114-48980133 Msa0296120:CDS 30.0%
! ATGGAATAGAGTTTTTCTTC+TGG + chr2_3:48980172-48980191 Msa0296120:CDS 30.0%
!!! TGTATGTGTCTGTTTTTAGA+TGG + chr2_3:48980257-48980276 Msa0296120:intron 30.0%
!! TGTTACATCTCTGGAATATT+TGG + chr2_3:48980324-48980343 Msa0296120:intron 30.0%
ATGATGAATGAATCCAAAAG+AGG - chr2_3:48980381-48980400 None:intergenic 30.0%
! TCTTTTGGATTCATTCATCA+TGG + chr2_3:48980380-48980399 Msa0296120:CDS 30.0%
! GTTAAAGAAAAAGGCTTTGT+TGG - chr2_3:48980435-48980454 None:intergenic 30.0%
GATCCATAAATAATTACCTG+AGG - chr2_3:48980479-48980498 None:intergenic 30.0%
TCTCGTATAAAAAGAATTGG+AGG + chr2_3:48981893-48981912 Msa0296120:intron 30.0%
CTTCTTATAAATAGGACAAG+AGG + chr2_3:48982044-48982063 Msa0296120:intron 30.0%
TATTGGTCAAATGCATCTAA+AGG + chr2_3:48982393-48982412 Msa0296120:intron 30.0%
!!! TTGGGACTTTTGAAACTTAA+AGG - chr2_3:48982710-48982729 None:intergenic 30.0%
!! ACTAATTTTAAGTGGGTGTT+AGG - chr2_3:48982574-48982593 None:intergenic 30.0%
!! ATTAGTCATCTTTTTAGGCA+TGG + chr2_3:48982588-48982607 Msa0296120:intron 30.0%
!!! TTGGGACTTTTGAAACTTAA+AGG + chr2_3:48982710-48982729 Msa0296120:intron 30.0%
! GAAACTTAAAGGACTTGTTT+AGG + chr2_3:48982721-48982740 Msa0296120:intron 30.0%
! TGAAACTTAAAGGACTTGTT+TGG + chr2_3:48982720-48982739 Msa0296120:intron 30.0%
! GAAACTTAAAGGACTTGTTT+GGG + chr2_3:48982721-48982740 Msa0296120:intron 30.0%
AAGGGATATTTATGGTGAAT+GGG - chr2_3:48982915-48982934 None:intergenic 30.0%
TAAGGGATATTTATGGTGAA+TGG - chr2_3:48982916-48982935 None:intergenic 30.0%
TTTAAGGATCATGACAAAGT+AGG - chr2_3:48983008-48983027 None:intergenic 30.0%
! TTGTTTTCATACATGCAGAT+TGG + chr2_3:48983100-48983119 Msa0296120:intron 30.0%
! ATGCATGACTTTATCTGTTT+TGG + chr2_3:48983193-48983212 Msa0296120:intron 30.0%
! GATATAAGATGTGTACGTTT+TGG + chr2_3:48983215-48983234 Msa0296120:intron 30.0%
! AGCTTATGATTACACACTTT+TGG + chr2_3:48983274-48983293 Msa0296120:intron 30.0%
AACAAAGCTGAGTATTTGTA+TGG - chr2_3:48983336-48983355 None:intergenic 30.0%
! TGTTTTGCAGATTGTGTTAT+GGG + chr2_3:48983562-48983581 Msa0296120:intron 30.0%
!!! TTTTAGGAAGGTATTGAAAC+AGG - chr2_3:48983655-48983674 None:intergenic 30.0%
CCTTCCTAAAATTTATCACT+CGG + chr2_3:48983664-48983683 Msa0296120:CDS 30.0%
CAAAAATGAAACCATTTGTG+AGG - chr2_3:48983709-48983728 None:intergenic 30.0%
! CTCACAAATGGTTTCATTTT+TGG + chr2_3:48983707-48983726 Msa0296120:CDS 30.0%
GTAATCGTTAGTACTTACAT+GGG - chr2_3:48983783-48983802 None:intergenic 30.0%
AGTAATCGTTAGTACTTACA+TGG - chr2_3:48983784-48983803 None:intergenic 30.0%
TCTACATAGACAAAATTGCA+GGG - chr2_3:48983856-48983875 None:intergenic 30.0%
ATCTACATAGACAAAATTGC+AGG - chr2_3:48983857-48983876 None:intergenic 30.0%
TATGTAGATGTTTGGATTGA+CGG + chr2_3:48983868-48983887 Msa0296120:intron 30.0%
CGGTTAAATTGTCAAAATCA+TGG + chr2_3:48983888-48983907 Msa0296120:intron 30.0%
TGCAAAGAACCAATATACTA+TGG + chr2_3:48984055-48984074 Msa0296120:CDS 30.0%
TGAAGAAATTAGACAGAACA+AGG + chr2_3:48984092-48984111 Msa0296120:CDS 30.0%
!! AGTGCTGATAACTATGAATT+TGG + chr2_3:48984160-48984179 Msa0296120:CDS 30.0%
!!! GAAGGAGTATCTTTTCAATT+CGG - chr2_3:48984225-48984244 None:intergenic 30.0%
! TGATGATGACTAATGACTAT+GGG + chr2_3:48984320-48984339 Msa0296120:intron 30.0%
TTATTGAGCGTGATTATGTT+GGG + chr2_3:48984755-48984774 Msa0296120:intron 30.0%
ATGAATCCATTATACCCAAT+TGG + chr2_3:48984994-48985013 Msa0296120:intron 30.0%
TGAATTCCAATTGGGTATAA+TGG - chr2_3:48985003-48985022 None:intergenic 30.0%
TGTCATCATGAATTCCAATT+GGG - chr2_3:48985011-48985030 None:intergenic 30.0%
ATGTCATCATGAATTCCAAT+TGG - chr2_3:48985012-48985031 None:intergenic 30.0%
AATAATGTGAATCACGTACA+TGG - chr2_3:48985059-48985078 None:intergenic 30.0%
GATTCACATTATTTGTACGT+TGG + chr2_3:48985066-48985085 Msa0296120:intron 30.0%
TATGCTAATTGGAAACATCA+AGG + chr2_3:48985252-48985271 Msa0296120:CDS 30.0%
GAAATTGAAGATGACAAACA+TGG + chr2_3:48985645-48985664 Msa0296120:CDS 30.0%
!! TCAGTTGATAAAAAATCTCC+CGG + chr2_3:48985768-48985787 Msa0296120:CDS 30.0%
TATCAAGTACCATCTTTGTT+TGG + chr2_3:48985807-48985826 Msa0296120:CDS 30.0%
! ATCAAGTACCATCTTTGTTT+GGG + chr2_3:48985808-48985827 Msa0296120:CDS 30.0%
ATTAACATTCAAACCCTCTT+TGG - chr2_3:48985877-48985896 None:intergenic 30.0%
TCATCCATATGTTGAAAAAG+TGG - chr2_3:48985922-48985941 None:intergenic 30.0%
! TAGAATGCTATTTGTGGTAA+GGG + chr2_3:48986113-48986132 Msa0296120:CDS 30.0%
!! AACTTTTAACTCCATCTCTT+AGG - chr2_3:48986161-48986180 None:intergenic 30.0%
GTTAAAAGTTGTTGTATGCT+AGG + chr2_3:48986171-48986190 Msa0296120:CDS 30.0%
GCAAATGTGTACCTAAAATT+AGG - chr2_3:48986469-48986488 None:intergenic 30.0%
TGAGTTCTTTGTCCTTTATT+CGG + chr2_3:48986596-48986615 Msa0296120:CDS 30.0%
!! AAATCATCTTGATTTGGCTT+TGG - chr2_3:48986697-48986716 None:intergenic 30.0%
GAGTCAAAATCATCTTGATT+TGG - chr2_3:48986703-48986722 None:intergenic 30.0%
AAACTTGAGTGATGTTGATC+GGG - chr2_3:48979927-48979946 None:intergenic 35.0%
!!! TGAACTTTTTTGTGGCTGTT+TGG - chr2_3:48980099-48980118 None:intergenic 35.0%
TACTTGATCCAAGAGGAAAA+TGG + chr2_3:48980141-48980160 Msa0296120:CDS 35.0%
ACTTGATCCAAGAGGAAAAT+GGG + chr2_3:48980142-48980161 Msa0296120:CDS 35.0%
AGAGTGCATAGAAGAAAAGT+GGG - chr2_3:48980223-48980242 None:intergenic 35.0%
!!! TGTGTCTGTTTTTAGATGGT+TGG + chr2_3:48980261-48980280 Msa0296120:intron 35.0%
ATTCCAGAGATGTAACATGT+CGG - chr2_3:48980321-48980340 None:intergenic 35.0%
! AAACATAAACGCTCCTCTTT+TGG + chr2_3:48980365-48980384 Msa0296120:CDS 35.0%
AAATAATTACCTGAGGGAGA+GGG - chr2_3:48980472-48980491 None:intergenic 35.0%
TAAATAATTACCTGAGGGAG+AGG - chr2_3:48980473-48980492 None:intergenic 35.0%
CTCCCTCAGGTAATTATTTA+TGG + chr2_3:48980473-48980492 Msa0296120:intron 35.0%
!!! GAGTTTGGACTTTGGTTTTT+AGG + chr2_3:48980806-48980825 Msa0296120:intron 35.0%
!!! AGGCTTCTCTAGCTTTTATT+TGG + chr2_3:48980826-48980845 Msa0296120:intron 35.0%
TGATACTTAGGGATGTCAAT+GGG - chr2_3:48981286-48981305 None:intergenic 35.0%
!!! TGAACTTTTTTGTGGCTGTT+TGG - chr2_3:48980099-48980118 None:intergenic 35.0%
TACTTGATCCAAGAGGAAAA+TGG + chr2_3:48980141-48980160 Msa0296120:CDS 35.0%
ACTTGATCCAAGAGGAAAAT+GGG + chr2_3:48980142-48980161 Msa0296120:CDS 35.0%
AGAGTGCATAGAAGAAAAGT+GGG - chr2_3:48980223-48980242 None:intergenic 35.0%
!!! TGTGTCTGTTTTTAGATGGT+TGG + chr2_3:48980261-48980280 Msa0296120:intron 35.0%
ATTCCAGAGATGTAACATGT+CGG - chr2_3:48980321-48980340 None:intergenic 35.0%
! AAACATAAACGCTCCTCTTT+TGG + chr2_3:48980365-48980384 Msa0296120:CDS 35.0%
AAATAATTACCTGAGGGAGA+GGG - chr2_3:48980472-48980491 None:intergenic 35.0%
TAAATAATTACCTGAGGGAG+AGG - chr2_3:48980473-48980492 None:intergenic 35.0%
CTCCCTCAGGTAATTATTTA+TGG + chr2_3:48980473-48980492 Msa0296120:intron 35.0%
CTCTTATAAATAGGACCGAA+TGG - chr2_3:48981947-48981966 None:intergenic 35.0%
!! GTTTTTCGTTTTTCCCAAAG+TGG + chr2_3:48982423-48982442 Msa0296120:intron 35.0%
GAAACTTAAAGGACCACTTT+GGG - chr2_3:48982439-48982458 None:intergenic 35.0%
TGAAACTTAAAGGACCACTT+TGG - chr2_3:48982440-48982459 None:intergenic 35.0%
CCAACTATGCTATCTACAAT+AGG - chr2_3:48982510-48982529 None:intergenic 35.0%
CCTATTGTAGATAGCATAGT+TGG + chr2_3:48982507-48982526 Msa0296120:intron 35.0%
!! ATCTTTTTAGGCATGGCAAA+TGG + chr2_3:48982595-48982614 Msa0296120:intron 35.0%
CATGTTGCATAATACTGAGT+TGG + chr2_3:48983047-48983066 Msa0296120:intron 35.0%
! AATACTGAGTTGGCAAATGA+AGG + chr2_3:48983057-48983076 Msa0296120:intron 35.0%
TGAAGCTATAAGTGTAATGC+AGG - chr2_3:48983136-48983155 None:intergenic 35.0%
!! CACACTTTTGGAAAACTTGT+TGG + chr2_3:48983286-48983305 Msa0296120:intron 35.0%
! CTGTTTTGCAGATTGTGTTA+TGG + chr2_3:48983561-48983580 Msa0296120:intron 35.0%
ATTCCATCTTTGTTAGAGCA+AGG + chr2_3:48983590-48983609 Msa0296120:CDS 35.0%
!! CCGAGTGATAAATTTTAGGA+AGG - chr2_3:48983667-48983686 None:intergenic 35.0%
! CAGACCGAGTGATAAATTTT+AGG - chr2_3:48983671-48983690 None:intergenic 35.0%
!!! GTTTCATTTTTGGAACCGTT+TGG + chr2_3:48983717-48983736 Msa0296120:CDS 35.0%
GCAGGGTTTAACAACATTTA+TGG - chr2_3:48983839-48983858 None:intergenic 35.0%
! GTATTTGTTGGGACTTCAAA+GGG + chr2_3:48983970-48983989 Msa0296120:CDS 35.0%
GAAATTAGACAGAACAAGGT+TGG + chr2_3:48984096-48984115 Msa0296120:CDS 35.0%
! AGATACTCCTTCCTATCTTT+TGG + chr2_3:48984233-48984252 Msa0296120:CDS 35.0%
! GATACTCCTTCCTATCTTTT+GGG + chr2_3:48984234-48984253 Msa0296120:CDS 35.0%
! ATACTCCTTCCTATCTTTTG+GGG + chr2_3:48984235-48984254 Msa0296120:CDS 35.0%
GAAAATACCTGAGAGTCATT+AGG - chr2_3:48984261-48984280 None:intergenic 35.0%
! GTGATGATGACTAATGACTA+TGG + chr2_3:48984319-48984338 Msa0296120:intron 35.0%
CGCTCCAAACCTTTATATTA+CGG + chr2_3:48984345-48984364 Msa0296120:intron 35.0%
CGGTAAAATGTGGATAATCA+CGG + chr2_3:48984365-48984384 Msa0296120:intron 35.0%
GTGGATAATCACGGTATTTA+AGG + chr2_3:48984374-48984393 Msa0296120:intron 35.0%
AGGTTGAAATATCATTGCAG+AGG + chr2_3:48984394-48984413 Msa0296120:intron 35.0%
CTTATTGAGCGTGATTATGT+TGG + chr2_3:48984754-48984773 Msa0296120:intron 35.0%
! TTGTACGTTGGTTGAAGTTA+AGG + chr2_3:48985078-48985097 Msa0296120:intron 35.0%
CAATTAGCATAGTGACTAGA+AGG - chr2_3:48985243-48985262 None:intergenic 35.0%
CTTCTAGTCACTATGCTAAT+TGG + chr2_3:48985241-48985260 Msa0296120:CDS 35.0%
TTATGCTAGAGATCAAATGC+AGG + chr2_3:48985498-48985517 Msa0296120:intron 35.0%
TTGATAAAAAATCTCCCGGA+GGG + chr2_3:48985772-48985791 Msa0296120:CDS 35.0%
!!! GGTACCACTTTTTCAACATA+TGG + chr2_3:48985915-48985934 Msa0296120:intron 35.0%
AAGTCCCTTGTATTCACAAA+GGG + chr2_3:48985973-48985992 Msa0296120:CDS 35.0%
TTCTCCCTTTGTGAATACAA+GGG - chr2_3:48985980-48985999 None:intergenic 35.0%
TTTCTCCCTTTGTGAATACA+AGG - chr2_3:48985981-48986000 None:intergenic 35.0%
TGCATACAGTTAACAAGAGA+AGG + chr2_3:48986078-48986097 Msa0296120:intron 35.0%
CAAATAGCATTCTACGAACT+GGG - chr2_3:48986107-48986126 None:intergenic 35.0%
ACAAATAGCATTCTACGAAC+TGG - chr2_3:48986108-48986127 None:intergenic 35.0%
! AGTTCGTAGAATGCTATTTG+TGG + chr2_3:48986107-48986126 Msa0296120:CDS 35.0%
! GTAGAATGCTATTTGTGGTA+AGG + chr2_3:48986112-48986131 Msa0296120:CDS 35.0%
! AGAATGCTATTTGTGGTAAG+GGG + chr2_3:48986114-48986133 Msa0296120:CDS 35.0%
! TTAGGAATTGGCTACTTTGA+AGG - chr2_3:48986143-48986162 None:intergenic 35.0%
TAACTCCATCTCTTAGGAAT+TGG - chr2_3:48986155-48986174 None:intergenic 35.0%
GTTGGAAGACGTTCTATAAA+TGG - chr2_3:48986246-48986265 None:intergenic 35.0%
! CTTACAACAGTCGAAGTATT+TGG + chr2_3:48986288-48986307 Msa0296120:CDS 35.0%
! AACAAGTGTGCCCTAATTTT+AGG + chr2_3:48986455-48986474 Msa0296120:intron 35.0%
AGTGTTAGATATTACTCACC+TGG + chr2_3:48986508-48986527 Msa0296120:CDS 35.0%
TTAGATATTACTCACCTGGT+TGG + chr2_3:48986512-48986531 Msa0296120:CDS 35.0%
TCTTCATAACATCGTGTTTG+TGG + chr2_3:48986721-48986740 Msa0296120:exon 35.0%
AACTTGAGTGATGTTGATCG+GGG - chr2_3:48979926-48979945 None:intergenic 40.0%
! AGGGTATTACTTGATCCAAG+AGG + chr2_3:48980134-48980153 Msa0296120:CDS 40.0%
! TTTTCTTCTGGTGTGTGCAA+TGG + chr2_3:48980184-48980203 Msa0296120:intron 40.0%
TTTCTTCTGGTGTGTGCAAT+GGG + chr2_3:48980185-48980204 Msa0296120:intron 40.0%
! GTGTGCAATGGGTTTATTTG+TGG + chr2_3:48980196-48980215 Msa0296120:intron 40.0%
! GAGAGTGCATAGAAGAAAAG+TGG - chr2_3:48980224-48980243 None:intergenic 40.0%
!!! ATACCCGTTTATTTTACCCG+CGG - chr2_3:48980622-48980641 None:intergenic 40.0%
TACCCGTTTCTTTATGGACA+CGG + chr2_3:48980647-48980666 Msa0296120:intron 40.0%
CACGGGTATTTAAATACCCA+CGG - chr2_3:48981159-48981178 None:intergenic 40.0%
ATCTCTATACGGGTAATCCA+CGG - chr2_3:48981177-48981196 None:intergenic 40.0%
CGGGTAGCATATTTATCCAA+CGG + chr2_3:48981222-48981241 Msa0296120:intron 40.0%
GGGTAGCATATTTATCCAAC+GGG + chr2_3:48981223-48981242 Msa0296120:intron 40.0%
GGTAGCATATTTATCCAACG+GGG + chr2_3:48981224-48981243 Msa0296120:intron 40.0%
CTGATACTTAGGGATGTCAA+TGG - chr2_3:48981287-48981306 None:intergenic 40.0%
! AGGGTATTACTTGATCCAAG+AGG + chr2_3:48980134-48980153 Msa0296120:CDS 40.0%
! TTTTCTTCTGGTGTGTGCAA+TGG + chr2_3:48980184-48980203 Msa0296120:intron 40.0%
TTTCTTCTGGTGTGTGCAAT+GGG + chr2_3:48980185-48980204 Msa0296120:intron 40.0%
! GTGTGCAATGGGTTTATTTG+TGG + chr2_3:48980196-48980215 Msa0296120:intron 40.0%
! GAGAGTGCATAGAAGAAAAG+TGG - chr2_3:48980224-48980243 None:intergenic 40.0%
TGCTTCCTTGAACTCATCTT+TGG + chr2_3:48982534-48982553 Msa0296120:intron 40.0%
TGGTACCAAAGATGAGTTCA+AGG - chr2_3:48982542-48982561 None:intergenic 40.0%
CTCATCTTTGGTACCAAATC+TGG + chr2_3:48982546-48982565 Msa0296120:intron 40.0%
!! TTTTTAGGCATGGCAAATGG+TGG + chr2_3:48982598-48982617 Msa0296120:intron 40.0%
!! CAAGTCTTTTTAGCGGATGA+TGG - chr2_3:48982658-48982677 None:intergenic 40.0%
! AATGTCTGATTGCTGGTTAG+AGG - chr2_3:48983312-48983331 None:intergenic 40.0%
GATCCTTGCTCTAACAAAGA+TGG - chr2_3:48983596-48983615 None:intergenic 40.0%
!!! TCATTTTTGGAACCGTTTGG+TGG + chr2_3:48983720-48983739 Msa0296120:CDS 40.0%
!!! CATTTTTGGAACCGTTTGGT+GGG + chr2_3:48983721-48983740 Msa0296120:CDS 40.0%
!!! ATTTTTGGAACCGTTTGGTG+GGG + chr2_3:48983722-48983741 Msa0296120:CDS 40.0%
AGGGTCATGTTGGTATTTGT+TGG + chr2_3:48983958-48983977 Msa0296120:CDS 40.0%
GGGTCATGTTGGTATTTGTT+GGG + chr2_3:48983959-48983978 Msa0296120:CDS 40.0%
! GGTATTTGTTGGGACTTCAA+AGG + chr2_3:48983969-48983988 Msa0296120:CDS 40.0%
! TAGACAGAACAAGGTTGGTT+TGG + chr2_3:48984101-48984120 Msa0296120:CDS 40.0%
CGCTCAATAAGCTCACAATA+GGG - chr2_3:48984745-48984764 None:intergenic 40.0%
ACGCTCAATAAGCTCACAAT+AGG - chr2_3:48984746-48984765 None:intergenic 40.0%
! GTGATGTTGTCAGCACTTTT+GGG + chr2_3:48985152-48985171 Msa0296120:intron 40.0%
TTAGCATAGTGACTAGAAGG+AGG - chr2_3:48985240-48985259 None:intergenic 40.0%
!! GTATTTCCGATCGATTTGAC+CGG + chr2_3:48985520-48985539 Msa0296120:intron 40.0%
! TTTTGTCCGGTCAAATCGAT+CGG - chr2_3:48985529-48985548 None:intergenic 40.0%
TGAAGATGACAAACATGGAG+TGG + chr2_3:48985650-48985669 Msa0296120:CDS 40.0%
!! AGTGGTGGATGAACAAAAGA+CGG + chr2_3:48985668-48985687 Msa0296120:CDS 40.0%
TAACTACGAGAGACAGTGTT+GGG + chr2_3:48985720-48985739 Msa0296120:CDS 40.0%
! GTTGATAAAAAATCTCCCGG+AGG + chr2_3:48985771-48985790 Msa0296120:CDS 40.0%
! GTACCATCTTTGTTTGGGTT+TGG + chr2_3:48985813-48985832 Msa0296120:CDS 40.0%
TCACCAAACCCAAACAAAGA+TGG - chr2_3:48985819-48985838 None:intergenic 40.0%
CAAGTCCCTTGTATTCACAA+AGG + chr2_3:48985972-48985991 Msa0296120:CDS 40.0%
AGTAGCCAATTCCTAAGAGA+TGG + chr2_3:48986147-48986166 Msa0296120:CDS 40.0%
GTGGAGATGAACTTCTATCA+TGG + chr2_3:48986208-48986227 Msa0296120:CDS 40.0%
!! TCCAACATCATCATCGACTT+TGG + chr2_3:48986260-48986279 Msa0296120:CDS 40.0%
! ACCAAAGTCGATGATGATGT+TGG - chr2_3:48986264-48986283 None:intergenic 40.0%
AGTATTTGGACTTGAAGCAG+AGG + chr2_3:48986302-48986321 Msa0296120:CDS 40.0%
!! CAATTCAATTGGCTTGGAGA+AGG + chr2_3:48986554-48986573 Msa0296120:CDS 40.0%
!! AATTGGCTTGGAGAAGGTAT+AGG + chr2_3:48986560-48986579 Msa0296120:CDS 40.0%
AAAGAAGTGGACCTTGACAA+AGG - chr2_3:48986631-48986650 None:intergenic 40.0%
TTTGTCAAGGTCCACTTCTT+TGG + chr2_3:48986630-48986649 Msa0296120:CDS 40.0%
TCTATCCTCTTCCAAAGAAG+TGG - chr2_3:48986644-48986663 None:intergenic 40.0%
!! ATCTTGATTTGGCTTTGGTG+AGG - chr2_3:48986692-48986711 None:intergenic 40.0%
ACTTGAGTGATGTTGATCGG+GGG - chr2_3:48979925-48979944 None:intergenic 45.0%
! TCTTCAGCCCATTTTCCTCT+TGG - chr2_3:48980152-48980171 None:intergenic 45.0%
!! GAGGAAAATGGGCTGAAGAA+TGG + chr2_3:48980153-48980172 Msa0296120:CDS 45.0%
GTAACATGTCGGTCATGCAA+CGG - chr2_3:48980310-48980329 None:intergenic 45.0%
TGACCGACATGTTACATCTC+TGG + chr2_3:48980315-48980334 Msa0296120:intron 45.0%
!! GGCTTTGTTGGCTTTGAAGA+AGG - chr2_3:48980423-48980442 None:intergenic 45.0%
GATAAAATCCGTCATGGGCA+CGG + chr2_3:48980575-48980594 Msa0296120:intron 45.0%
ATAAAATCCGTCATGGGCAC+GGG + chr2_3:48980576-48980595 Msa0296120:intron 45.0%
GTACCCGCGGGTAAAATAAA+CGG + chr2_3:48980615-48980634 Msa0296120:intron 45.0%
TACCCGCGGGTAAAATAAAC+GGG + chr2_3:48980616-48980635 Msa0296120:intron 45.0%
!!! TACCCGTTTATTTTACCCGC+GGG - chr2_3:48980621-48980640 None:intergenic 45.0%
ACCCGTTTCTTTATGGACAC+GGG + chr2_3:48980648-48980667 Msa0296120:intron 45.0%
TGCCCGTGTCCATAAAGAAA+CGG - chr2_3:48980653-48980672 None:intergenic 45.0%
TTTCTTTATGGACACGGGCA+CGG + chr2_3:48980653-48980672 Msa0296120:intron 45.0%
CAAAAATTCATGGGTACCCG+CGG + chr2_3:48981129-48981148 Msa0296120:intron 45.0%
TAAATACCCACGGATATCCG+CGG - chr2_3:48981149-48981168 None:intergenic 45.0%
CGTGGGTATTTAAATACCCG+TGG + chr2_3:48981157-48981176 Msa0296120:intron 45.0%
TCTCTATACGGGTAATCCAC+GGG - chr2_3:48981176-48981195 None:intergenic 45.0%
AGCATATTTATCCAACGGGG+CGG + chr2_3:48981227-48981246 Msa0296120:intron 45.0%
! TCTTCAGCCCATTTTCCTCT+TGG - chr2_3:48980152-48980171 None:intergenic 45.0%
!! GAGGAAAATGGGCTGAAGAA+TGG + chr2_3:48980153-48980172 Msa0296120:CDS 45.0%
GTAACATGTCGGTCATGCAA+CGG - chr2_3:48980310-48980329 None:intergenic 45.0%
TGACCGACATGTTACATCTC+TGG + chr2_3:48980315-48980334 Msa0296120:intron 45.0%
!! GGCTTTGTTGGCTTTGAAGA+AGG - chr2_3:48980423-48980442 None:intergenic 45.0%
! AGCGGATGATGGTGATGATT+CGG - chr2_3:48982647-48982666 None:intergenic 45.0%
GTATGGCAATGTCTGATTGC+TGG - chr2_3:48983319-48983338 None:intergenic 45.0%
TAGAGCAAGGATCAATTGCG+CGG + chr2_3:48983603-48983622 Msa0296120:CDS 45.0%
TATATGGTGAAACAGGCAGC+AGG + chr2_3:48983938-48983957 Msa0296120:intron 45.0%
ATATGGTGAAACAGGCAGCA+GGG + chr2_3:48983939-48983958 Msa0296120:intron 45.0%
TTAGGCCCCAAAAGATAGGA+AGG - chr2_3:48984243-48984262 None:intergenic 45.0%
GTCATTAGGCCCCAAAAGAT+AGG - chr2_3:48984247-48984266 None:intergenic 45.0%
! GGTGATGTTGTCAGCACTTT+TGG + chr2_3:48985151-48985170 Msa0296120:intron 45.0%
ACCTCCAGAGTACAACAGAA+AGG + chr2_3:48985176-48985195 Msa0296120:CDS 45.0%
TCCTTTCTGTTGTACTCTGG+AGG - chr2_3:48985180-48985199 None:intergenic 45.0%
CCATCCTTTCTGTTGTACTC+TGG - chr2_3:48985183-48985202 None:intergenic 45.0%
CCAGAGTACAACAGAAAGGA+TGG + chr2_3:48985180-48985199 Msa0296120:CDS 45.0%
AGATGACAAACATGGAGTGG+TGG + chr2_3:48985653-48985672 Msa0296120:CDS 45.0%
AACAAAAGACGGTTGCCACA+AGG + chr2_3:48985679-48985698 Msa0296120:CDS 45.0%
GTAACTACGAGAGACAGTGT+TGG + chr2_3:48985719-48985738 Msa0296120:CDS 45.0%
ATATCCCTTCTCAAACCCTC+CGG - chr2_3:48985790-48985809 None:intergenic 45.0%
!! TTGTTTGGGTTTGGTGAGAC+AGG + chr2_3:48985822-48985841 Msa0296120:CDS 45.0%
AGTTGTTGTATGCTAGGACC+AGG + chr2_3:48986177-48986196 Msa0296120:CDS 45.0%
TCATCTCCACTGAAGTTTCC+TGG - chr2_3:48986198-48986217 None:intergenic 45.0%
CTGTGGCAATTCAATTGGCT+TGG + chr2_3:48986548-48986567 Msa0296120:CDS 45.0%
! CTTGGAGAAGGTATAGGCAT+AGG + chr2_3:48986566-48986585 Msa0296120:CDS 45.0%
! AAGGTCCACTTCTTTGGAAG+AGG + chr2_3:48986636-48986655 Msa0296120:CDS 45.0%
!! ATATATATATATATACATAT+GGG - chr2_3:48980744-48980763 None:intergenic 5.0%
!! TATATATATATATATACATA+TGG - chr2_3:48980745-48980764 None:intergenic 5.0%
!! AAGTAAAATAAAAAAATTAA+GGG - chr2_3:48982933-48982952 None:intergenic 5.0%
!! AAAGTAAAATAAAAAAATTA+AGG - chr2_3:48982934-48982953 None:intergenic 5.0%
ATCGTCGATGTCATCGTCAG+TGG - chr2_3:48979982-48980001 None:intergenic 50.0%
CGACGATATCGTCAACAACG+AGG + chr2_3:48979995-48980014 Msa0296120:CDS 50.0%
! CATGCAACGGATAACGGTGA+CGG - chr2_3:48980297-48980316 None:intergenic 50.0%
GTCGGTCATGCAACGGATAA+CGG - chr2_3:48980303-48980322 None:intergenic 50.0%
TAATTACCTGAGGGAGAGGG+AGG - chr2_3:48980469-48980488 None:intergenic 50.0%
!!! CCATGACGGATTTTATCCGC+GGG - chr2_3:48980572-48980591 None:intergenic 50.0%
!!! CCCATGACGGATTTTATCCG+CGG - chr2_3:48980573-48980592 None:intergenic 50.0%
CCGCGGATAAAATCCGTCAT+GGG + chr2_3:48980570-48980589 Msa0296120:intron 50.0%
TAAAATCCGTCATGGGCACG+GGG + chr2_3:48980577-48980596 Msa0296120:intron 50.0%
GCCCGTGTCCATAAAGAAAC+GGG - chr2_3:48980652-48980671 None:intergenic 50.0%
AAATACCCACGGATATCCGC+GGG - chr2_3:48981148-48981167 None:intergenic 50.0%
CCGTACGGGTATCTCTATAC+GGG - chr2_3:48981187-48981206 None:intergenic 50.0%
CCCGTATAGAGATACCCGTA+CGG + chr2_3:48981184-48981203 Msa0296120:intron 50.0%
CCCGTACGGGTATCTCTATA+CGG - chr2_3:48981188-48981207 None:intergenic 50.0%
CCGTATAGAGATACCCGTAC+GGG + chr2_3:48981185-48981204 Msa0296120:intron 50.0%
TAGAGATACCCGTACGGGTA+TGG + chr2_3:48981190-48981209 Msa0296120:intron 50.0%
AGAGATACCCGTACGGGTAT+GGG + chr2_3:48981191-48981210 Msa0296120:intron 50.0%
GCATATTTATCCAACGGGGC+GGG + chr2_3:48981228-48981247 Msa0296120:intron 50.0%
CATATTTATCCAACGGGGCG+GGG + chr2_3:48981229-48981248 Msa0296120:intron 50.0%
TATCATACTACCCGTACCCG+CGG + chr2_3:48981257-48981276 Msa0296120:intron 50.0%
! CATGCAACGGATAACGGTGA+CGG - chr2_3:48980297-48980316 None:intergenic 50.0%
GTCGGTCATGCAACGGATAA+CGG - chr2_3:48980303-48980322 None:intergenic 50.0%
TAATTACCTGAGGGAGAGGG+AGG - chr2_3:48980469-48980488 None:intergenic 50.0%
TGGGTGTTAGGAGCCAGATT+TGG - chr2_3:48982562-48982581 None:intergenic 50.0%
AGAGCAAGGATCAATTGCGC+GGG + chr2_3:48983604-48983623 Msa0296120:CDS 50.0%
GTGCGTCGAAACCTCACAAA+TGG + chr2_3:48983695-48983714 Msa0296120:CDS 50.0%
GATAGCGAATCCCCACCAAA+CGG - chr2_3:48983735-48983754 None:intergenic 50.0%
GAGCAATGTGAGACAACACC+TGG + chr2_3:48984010-48984029 Msa0296120:CDS 50.0%
TGTGAGACAACACCTGGTTG+TGG + chr2_3:48984016-48984035 Msa0296120:CDS 50.0%
GTGAGACAACACCTGGTTGT+GGG + chr2_3:48984017-48984036 Msa0296120:CDS 50.0%
AGTGTTCTTAGCCCACAACC+AGG - chr2_3:48984031-48984050 None:intergenic 50.0%
GGTCACAGAACACAGAAGCA+AGG + chr2_3:48984122-48984141 Msa0296120:CDS 50.0%
! TTTGGGGCCTAATGACTCTC+AGG + chr2_3:48984251-48984270 Msa0296120:CDS 50.0%
TATCCCTTCTCAAACCCTCC+GGG - chr2_3:48985789-48985808 None:intergenic 50.0%
!! TGGGTTTGGTGAGACAGGTA+AGG + chr2_3:48985827-48985846 Msa0296120:intron 50.0%
CTAGGACCAGGAAACTTCAG+TGG + chr2_3:48986189-48986208 Msa0296120:CDS 50.0%
ACTCACCTGGTTGGAGAACT+TGG + chr2_3:48986521-48986540 Msa0296120:CDS 50.0%
CTCACCTGGTTGGAGAACTT+GGG + chr2_3:48986522-48986541 Msa0296120:CDS 50.0%
GGCTGCTGTGGCAATTCAAT+TGG + chr2_3:48986543-48986562 Msa0296120:CDS 50.0%
TGTCCTTTATTCGGCCTCGT+AGG + chr2_3:48986605-48986624 Msa0296120:CDS 50.0%
CGATAGCGACGAGTACGATG+AGG + chr2_3:48980025-48980044 Msa0296120:CDS 55.0%
GGCAAAAAAATCCGTGCCCG+CGG + chr2_3:48980543-48980562 Msa0296120:intron 55.0%
GCAAAAAAATCCGTGCCCGC+GGG + chr2_3:48980544-48980563 Msa0296120:intron 55.0%
! ATTTTATCCGCGGGTACCCG+CGG - chr2_3:48980563-48980582 None:intergenic 55.0%
CCCGCGGATAAAATCCGTCA+TGG + chr2_3:48980569-48980588 Msa0296120:intron 55.0%
! TTTGATGATACCCGTGCCCG+CGG + chr2_3:48980677-48980696 Msa0296120:intron 55.0%
GAGATACCCGTACGGGTATG+GGG + chr2_3:48981192-48981211 Msa0296120:intron 55.0%
ATCATACTACCCGTACCCGC+GGG + chr2_3:48981258-48981277 Msa0296120:intron 55.0%
AACAGGCAGCAGGGTCATGT+TGG + chr2_3:48983948-48983967 Msa0296120:intron 55.0%
GACGGTTGCCACAAGGACTT+CGG + chr2_3:48985686-48985705 Msa0296120:CDS 55.0%
ACATTCATCAACGCCGCGCA+TGG - chr2_3:48985749-48985768 None:intergenic 55.0%
ATCTCCCGGAGGGTTTGAGA+AGG + chr2_3:48985782-48985801 Msa0296120:CDS 55.0%
TCTCCCGGAGGGTTTGAGAA+GGG + chr2_3:48985783-48985802 Msa0296120:CDS 55.0%
TTGGAGAACTTGGGCTGCTG+TGG + chr2_3:48986531-48986550 Msa0296120:CDS 55.0%
AGGCCTACGAGGCCGAATAA+AGG - chr2_3:48986611-48986630 None:intergenic 55.0%
GACCTTGACAAAGGCCTACG+AGG - chr2_3:48986622-48986641 None:intergenic 55.0%
TATCCTCCTCCCTCTCCCTC+AGG + chr2_3:48980460-48980479 Msa0296120:CDS 60.0%
TTACCTGAGGGAGAGGGAGG+AGG - chr2_3:48980466-48980485 None:intergenic 60.0%
! TTTTATCCGCGGGTACCCGC+GGG - chr2_3:48980562-48980581 None:intergenic 60.0%
GGTAGCTAAACGGGTACCCG+CGG + chr2_3:48980602-48980621 Msa0296120:intron 60.0%
GTAGCTAAACGGGTACCCGC+GGG + chr2_3:48980603-48980622 Msa0296120:intron 60.0%
! TTGATGATACCCGTGCCCGC+GGG + chr2_3:48980678-48980697 Msa0296120:intron 60.0%
! TAACGGGTACGGATACCCGC+GGG - chr2_3:48980696-48980715 None:intergenic 60.0%
! CTAACGGGTACGGATACCCG+CGG - chr2_3:48980697-48980716 None:intergenic 60.0%
TACCCGTACGGGTATGGGGA+CGG + chr2_3:48981196-48981215 Msa0296120:intron 60.0%
TACCCGTCCCCATACCCGTA+CGG - chr2_3:48981202-48981221 None:intergenic 60.0%
TACGGGTATGGGGACGGGTA+CGG + chr2_3:48981202-48981221 Msa0296120:intron 60.0%
TTTATCCAACGGGGCGGGGA+CGG + chr2_3:48981233-48981252 Msa0296120:intron 60.0%
TCAATGGGTACCCGCGGGTA+CGG - chr2_3:48981271-48981290 None:intergenic 60.0%
GGATGTCAATGGGTACCCGC+GGG - chr2_3:48981276-48981295 None:intergenic 60.0%
GGGATGTCAATGGGTACCCG+CGG - chr2_3:48981277-48981296 None:intergenic 60.0%
TATCCTCCTCCCTCTCCCTC+AGG + chr2_3:48980460-48980479 Msa0296120:CDS 60.0%
TTACCTGAGGGAGAGGGAGG+AGG - chr2_3:48980466-48980485 None:intergenic 60.0%
ACACGCTGCCGAAGTCCTTG+TGG - chr2_3:48985697-48985716 None:intergenic 60.0%
GCAGCCCAAGTTCTCCAACC+AGG - chr2_3:48986529-48986548 None:intergenic 60.0%
GGCCTCGTAGGCCTTTGTCA+AGG + chr2_3:48986617-48986636 Msa0296120:CDS 60.0%
AATCCGTCATGGGCACGGGG+CGG + chr2_3:48980580-48980599 Msa0296120:intron 65.0%
GCACGGGGCGGGTAGCTAAA+CGG + chr2_3:48980592-48980611 Msa0296120:intron 65.0%
CACGGGGCGGGTAGCTAAAC+GGG + chr2_3:48980593-48980612 Msa0296120:intron 65.0%
TGGGTACCCGCGGATATCCG+TGG + chr2_3:48981139-48981158 Msa0296120:intron 65.0%
GGGTACCCGCGGATATCCGT+GGG + chr2_3:48981140-48981159 Msa0296120:intron 65.0%
ACCCGTACGGGTATGGGGAC+GGG + chr2_3:48981197-48981216 Msa0296120:intron 65.0%
ACCCGTCCCCATACCCGTAC+GGG - chr2_3:48981201-48981220 None:intergenic 65.0%
ACGGGTATGGGGACGGGTAC+GGG + chr2_3:48981203-48981222 Msa0296120:intron 65.0%
CAATGGGTACCCGCGGGTAC+GGG - chr2_3:48981270-48981289 None:intergenic 65.0%
! CAGTGTTGGGCTGCCATGCG+CGG + chr2_3:48985733-48985752 Msa0296120:CDS 65.0%
ATCCGTCATGGGCACGGGGC+GGG + chr2_3:48980581-48980600 Msa0296120:intron 70.0%
TACCCGCCCCGTGCCCATGA+CGG - chr2_3:48980586-48980605 None:intergenic 70.0%
GTACGGATACCCGCGGGCAC+GGG - chr2_3:48980690-48980709 None:intergenic 70.0%
GGTACGGATACCCGCGGGCA+CGG - chr2_3:48980691-48980710 None:intergenic 70.0%
GATATCCGTCCCCGCCCCGT+TGG - chr2_3:48981241-48981260 None:intergenic 70.0%
! TCCGTGCCCGCGGGTACCCG+CGG + chr2_3:48980553-48980572 Msa0296120:intron 80.0%
! TCCGCGGGTACCCGCGGGCA+CGG - chr2_3:48980557-48980576 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 48979918 48986784 48979918 ID=Msa0296120;Name=Msa0296120
chr2_3 mRNA 48979918 48986784 48979918 ID=Msa0296120-mRNA-1;Parent=Msa0296120;Name=Msa0296120-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.7|0.72|1|1|1|11|55|717
chr2_3 exon 48979918 48980193 48979918 ID=Msa0296120-mRNA-1:exon:15448;Parent=Msa0296120-mRNA-1
chr2_3 exon 48980353 48980481 48980353 ID=Msa0296120-mRNA-1:exon:15449;Parent=Msa0296120-mRNA-1
chr2_3 exon 48981307 48981441 48981307 ID=Msa0296120-mRNA-1:exon:15450;Parent=Msa0296120-mRNA-1
chr2_3 exon 48981601 48981729 48981601 ID=Msa0296120-mRNA-1:exon:15451;Parent=Msa0296120-mRNA-1
chr2_3 exon 48983572 48983784 48983572 ID=Msa0296120-mRNA-1:exon:15452;Parent=Msa0296120-mRNA-1
chr2_3 exon 48983953 48984272 48983953 ID=Msa0296120-mRNA-1:exon:15453;Parent=Msa0296120-mRNA-1
chr2_3 exon 48985165 48985273 48985165 ID=Msa0296120-mRNA-1:exon:15454;Parent=Msa0296120-mRNA-1
chr2_3 exon 48985607 48985843 48985607 ID=Msa0296120-mRNA-1:exon:15455;Parent=Msa0296120-mRNA-1
chr2_3 exon 48985916 48986002 48985916 ID=Msa0296120-mRNA-1:exon:15456;Parent=Msa0296120-mRNA-1
chr2_3 exon 48986087 48986352 48986087 ID=Msa0296120-mRNA-1:exon:15457;Parent=Msa0296120-mRNA-1
chr2_3 exon 48986477 48986784 48986477 ID=Msa0296120-mRNA-1:exon:15458;Parent=Msa0296120-mRNA-1
chr2_3 CDS 48979918 48980193 48979918 ID=Msa0296120-mRNA-1:cds;Parent=Msa0296120-mRNA-1
chr2_3 CDS 48980353 48980481 48980353 ID=Msa0296120-mRNA-1:cds;Parent=Msa0296120-mRNA-1
chr2_3 CDS 48981307 48981441 48981307 ID=Msa0296120-mRNA-1:cds;Parent=Msa0296120-mRNA-1
chr2_3 CDS 48981601 48981729 48981601 ID=Msa0296120-mRNA-1:cds;Parent=Msa0296120-mRNA-1
chr2_3 CDS 48983572 48983784 48983572 ID=Msa0296120-mRNA-1:cds;Parent=Msa0296120-mRNA-1
chr2_3 CDS 48983953 48984272 48983953 ID=Msa0296120-mRNA-1:cds;Parent=Msa0296120-mRNA-1
chr2_3 CDS 48985165 48985273 48985165 ID=Msa0296120-mRNA-1:cds;Parent=Msa0296120-mRNA-1
chr2_3 CDS 48985607 48985843 48985607 ID=Msa0296120-mRNA-1:cds;Parent=Msa0296120-mRNA-1
chr2_3 CDS 48985916 48986002 48985916 ID=Msa0296120-mRNA-1:cds;Parent=Msa0296120-mRNA-1
chr2_3 CDS 48986087 48986352 48986087 ID=Msa0296120-mRNA-1:cds;Parent=Msa0296120-mRNA-1
chr2_3 CDS 48986477 48986729 48986477 ID=Msa0296120-mRNA-1:cds;Parent=Msa0296120-mRNA-1
chr2_3 three_prime_UTR 48986730 48986784 48986730 ID=Msa0296120-mRNA-1:three_prime_utr;Parent=Msa0296120-mRNA-1
Gene Sequence

>Msa0296120

ATGGCCCCCGATCAACATCACTCAAGTTTTAATTCAAACATGCAACACTACTATTACAACACCACTGACGATGACATCGACGATATCGTCAACAACGAGGTTGTTAACGATAGCGACGAGTACGATGAGGATGAGTATCAGTATCAGTATCAGCATGAAGAAGATGAAAAAGAAGAAACCAAACAGCCACAAAAAAGTTCATCTTTTTCATTGAGTAGGGTATTACTTGATCCAAGAGGAAAATGGGCTGAAGAATGGAATAGAGTTTTTCTTCTGTTCTATATTCATAAACATAAACGCTCCTCTTTTGGATTCATTCATCATGGAACTTCTTCTTCTGACTCCTTCTTCAAAGCCAACAAAGCCTTTTTCTTTAACATCTTTATCCTCCTCCCTCTCCCTCAGTATCAGTATCAGCATGAAGAAGATGAAAAAGAAGAAACCAAACAGCCACAAAAAAGTTCATCTTTTTCATTGAGTAGGGTATTACTTGATCCAAGAGGAAAATGGGCTGAAGAATGGAATAGAGTTTTTCTTCTGTTCTATATTCATAAACATAAACGCTCCTCTTTTGGATTCATTCATCATGGAACTTCTTCTTCTGACTCCTTCTTCAAAGCCAACAAAGCCTTTTTCTTTAACATCTTTATCCTCCTCCCTCTCCCTCAGATTGTGTTATGGGTGACAATTCCATCTTTGTTAGAGCAAGGATCAATTGCGCGGGTGATTTCTGTATTGTTGATTATGTTCCTGTTTCAATACCTTCCTAAAATTTATCACTCGGTCTGCTTCGTGCGTCGAAACCTCACAAATGGTTTCATTTTTGGAACCGTTTGGTGGGGATTCGCTATCAATATGATCGCTTATTTTGTCGCTTCCCATGCAGCAGGGTCATGTTGGTATTTGTTGGGACTTCAAAGGGCAGCAAAGTGTCTAGAAGAGCAATGTGAGACAACACCTGGTTGTGGGCTAAGAACACTATGTTGCAAAGAACCAATATACTATGGAAACTATAACATGTTGAAGAAATTAGACAGAACAAGGTTGGTTTGGTCACAGAACACAGAAGCAAGGTCTACATGTTTAGCTAGTGCTGATAACTATGAATTTGGAGTTTATGAATGGAGTGTTCAACTTGTCACAAATAATAGCCGAATTGAAAAGATACTCCTTCCTATCTTTTGGGGCCTAATGACTCTCAGCACTTTTGGGAACCTCCAGAGTACAACAGAAAGGATGGAAGTCGTTTTCAACACTATTATATTAACTAGTGGCCTCCTTCTAGTCACTATGCTAATTGGAAACATCAAGGTATTTTTACATGCTACAACATCAAAGAAGCAAGCAATGAAATTGAAGATGACAAACATGGAGTGGTGGATGAACAAAAGACGGTTGCCACAAGGACTTCGGCAGCGTGTACGTAACTACGAGAGACAGTGTTGGGCTGCCATGCGCGGCGTTGATGAATGTCAGTTGATAAAAAATCTCCCGGAGGGTTTGAGAAGGGATATCAAGTACCATCTTTGTTTGGGTTTGGTGAGACAGGTACCACTTTTTCAACATATGGATGAATTGGTGCTAGAGTACATTTGTGACTGTGTCAAGTCCCTTGTATTCACAAAGGGAGAAACATTAACAAGAGAAGGAGACCCAGTTCGTAGAATGCTATTTGTGGTAAGGGGTCACCTTCAAAGTAGCCAATTCCTAAGAGATGGAGTTAAAAGTTGTTGTATGCTAGGACCAGGAAACTTCAGTGGAGATGAACTTCTATCATGGTGTTTAAGAAGACCATTTATAGAACGTCTTCCAACATCATCATCGACTTTGGTGACGCTTACAACAGTCGAAGTATTTGGACTTGAAGCAGAGGATGTCAAATATGTGACGCAAAATTTTAGGTACACATTTGCAAAAGAAAATGTTAGAAGAAGTGTTAGATATTACTCACCTGGTTGGAGAACTTGGGCTGCTGTGGCAATTCAATTGGCTTGGAGAAGGTATAGGCATAGGTTGACTTTGAGTTCTTTGTCCTTTATTCGGCCTCGTAGGCCTTTGTCAAGGTCCACTTCTTTGGAAGAGGATAGACTTCGTCTTTATACAGCTTTGCTAACCTCACCAAAGCCAAATCAAGATGATTTTGACTCTTCATAA
Protein sequence

>Msa0296120

MAPDQHHSSFNSNMQHYYYNTTDDDIDDIVNNEVVNDSDEYDEDEYQYQYQHEEDEKEETKQPQKSSSFSLSRVLLDPRGKWAEEWNRVFLLFYIHKHKRSSFGFIHHGTSSSDSFFKANKAFFFNIFILLPLPQYQYQHEEDEKEETKQPQKSSSFSLSRVLLDPRGKWAEEWNRVFLLFYIHKHKRSSFGFIHHGTSSSDSFFKANKAFFFNIFILLPLPQIVLWVTIPSLLEQGSIARVISVLLIMFLFQYLPKIYHSVCFVRRNLTNGFIFGTVWWGFAINMIAYFVASHAAGSCWYLLGLQRAAKCLEEQCETTPGCGLRTLCCKEPIYYGNYNMLKKLDRTRLVWSQNTEARSTCLASADNYEFGVYEWSVQLVTNNSRIEKILLPIFWGLMTLSTFGNLQSTTERMEVVFNTIILTSGLLLVTMLIGNIKVFLHATTSKKQAMKLKMTNMEWWMNKRRLPQGLRQRVRNYERQCWAAMRGVDECQLIKNLPEGLRRDIKYHLCLGLVRQVPLFQHMDELVLEYICDCVKSLVFTKGETLTREGDPVRRMLFVVRGHLQSSQFLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPTSSSTLVTLTTVEVFGLEAEDVKYVTQNFRYTFAKENVRRSVRYYSPGWRTWAAVAIQLAWRRYRHRLTLSSLSFIRPRRPLSRSTSLEEDRLRLYTALLTSPKPNQDDFDSS*