AlfalfaGEDB | Msa0296800

M. sativa cultivar zhongmu-4 / Msa0296800

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF09756.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0296800	XP_003596651.1	98.311	296	4	1	1	295	1	296	0.0	587

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0296800	sp\|Q94C53\|DDRGK_ARATH	64.262	305	92	5	1	295	1	298	4.68e-96	288

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0296800	G7IJN2	98.311	296	4	1	1	295	1	296	0.0	587

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0103480	Msa0296800	0.821852	3.238458e-53	-8.615850e-47
Msa0296800	Msa0683140	0.808059	3.730576e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0296800	MtrunA17_Chr2g0319571	98.311	296	4	1	1	295	1	296	0.0	587

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0296800	AT4G27120.2	64.262	305	92	5	1	295	1	298	4.76e-97	288
Msa0296800	AT4G27120.1	64.262	305	92	5	1	295	1	298	4.76e-97	288
Msa0296800	AT4G27120.3	75.000	228	47	4	76	295	4	229	6.89e-86	257

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Find 78 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCATTTACATCTCAC+AGG	0.525131	2_3:+50357731	Msa0296800:CDS
AAACCTTGTTGCGTTGCAGG+CGG	0.623759	2_3:-50352498	None:intergenic
AAATTAATTGAGAAATTACA+TGG	0.504193	2_3:-50358158	None:intergenic
AACCTGATGAGATTCTTCGG+AGG	0.714808	2_3:-50352301	None:intergenic
AAGACCGTTATTCAGAAATG+CGG	0.686615	2_3:+50354891	Msa0296800:CDS
AAGCCAAAGCTCAAAAGGCT+AGG	0.524157	2_3:+50355046	Msa0296800:CDS
AATAAACCTTGTTGCGTTGC+AGG	0.302830	2_3:-50352501	None:intergenic
AATCAAAATATCTATCTTTG+CGG	0.413487	2_3:-50352155	None:intergenic
AATCGCGATGGCGTTTCCAT+AGG	0.517904	2_3:-50352257	None:intergenic
AATCTTGTCTTGCTATGAAA+AGG	0.456615	2_3:-50358258	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTCTTTACATCATCAACGA+TGG	+	chr2_3:50352176-50352195	Msa0296800:exon	30.0%
GTGTTAAATGTGGTGAAATT+AGG	-	chr2_3:50352347-50352366	None:intergenic	30.0%
ATTCCATAAGCTCTTTCAAA+CGG	+	chr2_3:50352831-50352850	Msa0296800:intron	30.0%
AAATTCCATTAATCAGATGG+TGG	-	chr2_3:50352907-50352926	None:intergenic	30.0%
AAAATTGAACTGCTGTAGTT+TGG	+	chr2_3:50353054-50353073	Msa0296800:intron	30.0%
AAATTGAACTGCTGTAGTTT+GGG	+	chr2_3:50353055-50353074	Msa0296800:intron	30.0%
TTAAACTAGTACTGCTTTGT+GGG	+	chr2_3:50353215-50353234	Msa0296800:intron	30.0%
CAAAGAAAAAGGAACTCAAA+AGG	+	chr2_3:50353367-50353386	Msa0296800:CDS	30.0%
CACTAAGATATTCATTTGTC+TGG	+	chr2_3:50353484-50353503	Msa0296800:intron	30.0%
CAGACATGATATTCAGATAT+TGG	+	chr2_3:50353717-50353736	Msa0296800:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	50352099	50358287	50352099	ID=Msa0296800;Name=Msa0296800
chr2_3	mRNA	50352099	50358287	50352099	ID=Msa0296800-mRNA-1;Parent=Msa0296800;Name=Msa0296800-mRNA-1;_AED=0.03;_eAED=0.03;_QI=96\|1\|1\|1\|1\|1\|8\|382\|295
chr2_3	exon	50352099	50352320	50352099	ID=Msa0296800-mRNA-1:exon:15795;Parent=Msa0296800-mRNA-1
chr2_3	exon	50352408	50352516	50352408	ID=Msa0296800-mRNA-1:exon:15796;Parent=Msa0296800-mRNA-1
chr2_3	exon	50353310	50353413	50353310	ID=Msa0296800-mRNA-1:exon:15797;Parent=Msa0296800-mRNA-1
chr2_3	exon	50354866	50354955	50354866	ID=Msa0296800-mRNA-1:exon:15798;Parent=Msa0296800-mRNA-1
chr2_3	exon	50355039	50355197	50355039	ID=Msa0296800-mRNA-1:exon:15799;Parent=Msa0296800-mRNA-1
chr2_3	exon	50355383	50355439	50355383	ID=Msa0296800-mRNA-1:exon:15800;Parent=Msa0296800-mRNA-1
chr2_3	exon	50357227	50357263	50357227	ID=Msa0296800-mRNA-1:exon:15801;Parent=Msa0296800-mRNA-1
chr2_3	exon	50357700	50358287	50357700	ID=Msa0296800-mRNA-1:exon:15802;Parent=Msa0296800-mRNA-1
chr2_3	five_prime_UTR	50352099	50352194	50352099	ID=Msa0296800-mRNA-1:five_prime_utr;Parent=Msa0296800-mRNA-1
chr2_3	CDS	50352195	50352320	50352195	ID=Msa0296800-mRNA-1:cds;Parent=Msa0296800-mRNA-1
chr2_3	CDS	50352408	50352516	50352408	ID=Msa0296800-mRNA-1:cds;Parent=Msa0296800-mRNA-1
chr2_3	CDS	50353310	50353413	50353310	ID=Msa0296800-mRNA-1:cds;Parent=Msa0296800-mRNA-1
chr2_3	CDS	50354866	50354955	50354866	ID=Msa0296800-mRNA-1:cds;Parent=Msa0296800-mRNA-1
chr2_3	CDS	50355039	50355197	50355039	ID=Msa0296800-mRNA-1:cds;Parent=Msa0296800-mRNA-1
chr2_3	CDS	50355383	50355439	50355383	ID=Msa0296800-mRNA-1:cds;Parent=Msa0296800-mRNA-1
chr2_3	CDS	50357227	50357263	50357227	ID=Msa0296800-mRNA-1:cds;Parent=Msa0296800-mRNA-1
chr2_3	CDS	50357700	50357905	50357700	ID=Msa0296800-mRNA-1:cds;Parent=Msa0296800-mRNA-1
chr2_3	three_prime_UTR	50357906	50358287	50357906	ID=Msa0296800-mRNA-1:three_prime_utr;Parent=Msa0296800-mRNA-1

Gene Sequence

>Msa0296800

ATGGATGATTTTTTCGTAGCAATCCTCTCTACACTTCTCATTGCAGCACTAATTCCACTCTACCTATGGAAACGCCATCGCGATTCTCAATCCTCATCTTCATCTTCCTCCGAAGAATCTCATCAGGCTCCGGTTAGAGAACCTGCTGCACGTGCCACCGCTACTCGCCGCATGCGTCGGAGAACGGTTGCGTCTGGTGCTAGCTCTTCATCAGCTCCGCCTGCAACGCAACAAGAGTCTGGAGATGAAAGTGACAATGAAGCTGCTGGTGATGAGCATGAGGCCAAAGCATCAAAGAAAAAGGAACTCAAAAGGCAAGAGAGGGAAGCTCGACGGCAGGCCGAAGAAGCTCGGCAGTCAAAGCAAGACCGTTATTCAGAAATGCGGAGGTTGAAGGATGAAGAGCGTGAGGCACAGGAGCGTAAGTTGGAAGAGGAAGCCAAAGCTCAAAAGGCTAGGGAAGAGGAAGCTGCTGCGTTAGAGTTTGACAAGTGGAAAGGTGAATTTTCAGTTGATGATGAAGGTACACTTGAAGAGGAGCAGGATAAAACTGAAGATTTGCTTACCAATTTTGTTGAATATATAAAGAAGCACAAATGTGTTCCCTTAGAAGATCTTGCTGCAGAATTTAAATTGCGCACACAGGAATGTATCAATCGCATCACATCTCTGGAAAGCATGGGTCGGCTTTCGGGTGTCATGGATGATAGGGGAAAATTCATTTACATCTCACAGGAAGAGATGAAAGCTGTTGCTGATTATATTAAGCGACAAGGGAGGGTTAGCATTTCCCATTTAGCTAGTAAATCAAACCAGTTCATTGATTTAGAGCCAAAGACTCATTATGCTGAGGACATTAGTAACATGGAGGAGATAACTGTCAACTGA

Protein sequence

>Msa0296800

MDDFFVAILSTLLIAALIPLYLWKRHRDSQSSSSSSSEESHQAPVREPAARATATRRMRRRTVASGASSSSAPPATQQESGDESDNEAAGDEHEAKASKKKELKRQEREARRQAEEARQSKQDRYSEMRRLKDEEREAQERKLEEEAKAQKAREEEAAALEFDKWKGEFSVDDEGTLEEEQDKTEDLLTNFVEYIKKHKCVPLEDLAAEFKLRTQECINRITSLESMGRLSGVMDDRGKFIYISQEEMKAVADYIKRQGRVSISHLASKSNQFIDLEPKTHYAEDISNMEEITVN*