AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0683140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0683140 MtrunA17_Chr4g0030021 97.203 286 7 1 1 286 1 285 0.0 575
Msa0683140 MtrunA17_Chr4g0073251 51.136 264 125 3 1 264 1 260 1.39e-89 267
Msa0683140 MtrunA17_Chr6g0462061 46.071 280 134 3 2 281 3 265 3.33e-82 249
Msa0683140 MtrunA17_Chr8g0366571 46.377 276 137 4 1 274 1 267 1.11e-77 237
Msa0683140 MtrunA17_Chr1g0199961 45.000 280 137 3 2 281 3 265 3.18e-75 231
Msa0683140 MtrunA17_Chr8g0389221 43.609 266 143 3 1 266 1 259 3.94e-74 228
Msa0683140 MtrunA17_Chr5g0411131 44.891 274 144 3 1 274 1 267 3.61e-63 200
Msa0683140 MtrunA17_Chr4g0062101 38.158 228 138 1 36 263 38 262 9.34e-60 191
Msa0683140 MtrunA17_Chr8g0386471 34.944 269 168 3 1 269 3 264 7.40e-59 189
Msa0683140 MtrunA17_Chr5g0447681 32.432 259 145 7 4 259 50 281 1.51e-33 124
Msa0683140 MtrunA17_Chr2g0307651 36.986 146 90 1 2 147 3 146 7.80e-20 84.3
Msa0683140 MtrunA17_Chr2g0307641 36.957 92 56 1 186 275 2 93 1.58e-17 75.9
Msa0683140 MtrunA17_Chr5g0447671 25.000 144 80 3 119 258 47 166 4.70e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0683140 AT3G45600.1 78.671 286 60 1 1 286 1 285 1.12e-171 476
Msa0683140 AT5G60220.1 73.285 277 73 1 1 277 1 276 1.07e-129 371
Msa0683140 AT3G45600.2 81.871 171 31 0 1 171 1 171 2.91e-103 300
Msa0683140 AT2G23810.1 48.162 272 136 4 2 272 3 270 4.30e-89 266
Msa0683140 AT4G28050.1 46.212 264 137 3 1 264 2 260 8.32e-83 250
Msa0683140 AT4G30430.1 42.701 274 148 4 1 274 2 266 9.08e-82 248
Msa0683140 AT2G19580.1 44.569 267 140 4 1 266 1 260 2.02e-71 221
Msa0683140 AT5G46700.1 44.161 274 146 3 1 274 1 267 1.36e-68 214
Msa0683140 AT3G12090.1 44.128 281 137 6 2 281 3 264 1.59e-68 214
Msa0683140 AT1G18520.1 38.636 264 157 3 2 263 3 263 4.88e-65 205
Msa0683140 AT4G23410.1 39.146 281 152 4 2 281 3 265 6.33e-63 200
Msa0683140 AT1G63260.6 33.456 272 166 4 1 272 3 259 2.88e-56 183
Msa0683140 AT1G63260.1 33.456 272 166 4 1 272 3 259 2.88e-56 183
Msa0683140 AT1G63260.3 33.456 272 166 4 1 272 3 259 4.54e-56 182
Msa0683140 AT1G63260.2 35.632 261 155 4 1 261 3 250 1.16e-54 178
Msa0683140 AT1G63260.5 35.426 223 137 3 1 223 3 218 9.05e-48 159
Msa0683140 AT2G03840.1 28.400 250 166 5 16 259 27 269 6.61e-36 130
Msa0683140 AT1G63260.4 34.426 183 114 2 1 183 3 179 9.06e-36 127
Msa0683140 AT5G23030.1 29.658 263 177 3 1 263 2 256 5.33e-34 124
Msa0683140 AT5G57810.1 28.358 268 156 8 9 258 60 309 4.56e-25 102

Find 77 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTATGAATAGAGGGTATT+TGG 0.185250 4_4:+45562669 Msa0683140:CDS
GCTTATGTTGTGACGGATAA+AGG 0.213333 4_4:+45562634 Msa0683140:CDS
TTAGTCATTGGTGTGCTTAT+TGG 0.213548 4_4:+45562598 Msa0683140:CDS
AGCTATTTATGTTAGGGTTT+TGG 0.217204 4_4:+45568377 Msa0683140:three_prime_UTR
GGAAGATTAGTTCTTGTATA+AGG 0.219711 4_4:+45562755 Msa0683140:CDS
GAAATTCCTATTATGATTAA+TGG 0.245777 4_4:-45562490 None:intergenic
TATTATTTGCAGGATTATTC+TGG 0.279394 4_4:+45562694 Msa0683140:CDS
AGTGGCTAGTGATGAGTATT+GGG 0.307047 4_4:+45562732 Msa0683140:CDS
GATTGGAATTGATAGTAAAA+AGG 0.320426 4_4:-45562401 None:intergenic
AAGAAAACTCAATCCTATTC+AGG 0.328328 4_4:+45562849 Msa0683140:CDS
TTCTTCCATTTGTTGCAGTC+AGG 0.329085 4_4:-45568096 None:intergenic
AGCTTTAAGCTATTTATGTT+AGG 0.340610 4_4:+45568370 Msa0683140:three_prime_UTR
CAATCCTAGGAGGTGGAATA+TGG 0.344333 4_4:+45562419 Msa0683140:CDS
AGAACAAGTAACCACTTAAT+TGG 0.345846 4_4:+45562361 Msa0683140:CDS
CAATGGCCATTAATCATAAT+AGG 0.346510 4_4:+45562484 Msa0683140:CDS
GTATTTGGATTATTATTTGC+AGG 0.348461 4_4:+45562684 Msa0683140:CDS
GTTGTCATGTTCTTAGTCAT+TGG 0.349196 4_4:+45562586 Msa0683140:CDS
GTCATCCTTGCTTCACCATA+AGG 0.359601 4_4:-45568297 None:intergenic
TTACATCTAATCATAATAAA+TGG 0.361465 4_4:+45568547 Msa0683140:three_prime_UTR
GAAGATTAGTTCTTGTATAA+GGG 0.367420 4_4:+45562756 Msa0683140:CDS
CGTTGTAGTATGTATGACTT+TGG 0.392238 4_4:+45568425 Msa0683140:three_prime_UTR
ATATAAGAACATACCTGAAT+AGG 0.397801 4_4:-45562862 None:intergenic
CTTATGTTGTGACGGATAAA+GGG 0.405211 4_4:+45562635 Msa0683140:CDS
TTACTATCAATTCCAATCCT+AGG 0.408045 4_4:+45562406 Msa0683140:CDS
CGTATCAAAACGAGACAGTA+TGG 0.408828 4_4:+45568040 Msa0683140:CDS
GTAACACGCCCCTGCAAAAC+CGG 0.415261 4_4:-45562533 None:intergenic
ATCATGGTTGTTTCATTAGC+CGG 0.418747 4_4:+45562514 Msa0683140:CDS
GCTTTAAGCTATTTATGTTA+GGG 0.425111 4_4:+45568371 Msa0683140:three_prime_UTR
CCATTTGTTGCAGTCAGGGT+TGG 0.429976 4_4:-45568091 None:intergenic
TCTTGCAAAGCTGGTGTACT+TGG 0.432450 4_4:+45568150 Msa0683140:CDS
TCTTCCATTTGTTGCAGTCA+GGG 0.435866 4_4:-45568095 None:intergenic
ACTGTCTCAAATTTCTTCAA+TGG 0.436000 4_4:+45562467 Msa0683140:CDS
AATCATAACAAAGTTGTTGT+TGG 0.436839 4_4:-45568122 None:intergenic
CGGATAAAGGGTCTGGAAGA+AGG 0.448561 4_4:+45562647 Msa0683140:CDS
GAGATTTATAGAAGAAGAGT+TGG 0.450786 4_4:-45562244 None:intergenic
TTCTAAAGCTTGTAGGAAGT+TGG 0.451166 4_4:+45562780 Msa0683140:CDS
GATTGTGATTCTTGCAAAGC+TGG 0.451997 4_4:+45568141 Msa0683140:CDS
TAAGGGATTCTAAAGCTTGT+AGG 0.452393 4_4:+45562773 Msa0683140:CDS
CCAACCCTGACTGCAACAAA+TGG 0.453278 4_4:+45568091 Msa0683140:CDS
GAGTGGCTAGTGATGAGTAT+TGG 0.454709 4_4:+45562731 Msa0683140:CDS
ATGGATAATGATGAACCTTA+TGG 0.465091 4_4:+45568282 Msa0683140:CDS
GGAAGAAGGGTTATGAATAG+AGG 0.468654 4_4:+45562661 Msa0683140:CDS
AACGAGACAGTATGGATTCA+AGG 0.469950 4_4:+45568048 Msa0683140:CDS
TTGGTAGTCTCAAGAAGAGT+TGG 0.481632 4_4:+45568169 Msa0683140:CDS
GTTGTGACGGATAAAGGGTC+TGG 0.489336 4_4:+45562640 Msa0683140:CDS
AGTTTAGTAGACCAATTAAG+TGG 0.514410 4_4:-45562372 None:intergenic
AAGAACATATCAGCAGTCTC+AGG 0.515949 4_4:-45562823 None:intergenic
ATTTGCAGGATTATTCTGGT+TGG 0.516447 4_4:+45562698 Msa0683140:CDS
GCAGGATTATTCTGGTTGGT+TGG 0.518544 4_4:+45562702 Msa0683140:CDS
CATATTCCACCTCCTAGGAT+TGG 0.519722 4_4:-45562418 None:intergenic
AATATTTGCTTATGTTGTGA+CGG 0.520715 4_4:+45562627 Msa0683140:CDS
GTAGTCTCAAGAAGAGTTGG+AGG 0.530350 4_4:+45568172 Msa0683140:CDS
CATAATAGGAATTTCCATCA+TGG 0.533378 4_4:+45562498 Msa0683140:CDS
ACTTTGGATTTAATCTTGCA+AGG 0.533904 4_4:+45568441 Msa0683140:three_prime_UTR
ATTTATAGAAGAAGAGTTGG+TGG 0.534358 4_4:-45562241 None:intergenic
TCAATTCCAATCCTAGGAGG+TGG 0.549195 4_4:+45562412 Msa0683140:CDS
TACGAATAGCCACAATCTGT+TGG 0.552791 4_4:-45568021 None:intergenic
GGCTAATGAAACAACCATGA+TGG 0.553697 4_4:-45562512 None:intergenic
TGCAAGCCTCCAACAGATTG+TGG 0.554204 4_4:+45568012 Msa0683140:CDS
GGATAAAGGGTCTGGAAGAA+GGG 0.556945 4_4:+45562648 Msa0683140:CDS
ACAGTATGGATTCAAGGAGC+AGG 0.564050 4_4:+45568054 Msa0683140:CDS
TTAGCCATATTCCACCTCCT+AGG 0.565069 4_4:-45562423 None:intergenic
GTGGCTAGTGATGAGTATTG+GGG 0.574200 4_4:+45562733 Msa0683140:CDS
GAAGAAGGGTTATGAATAGA+GGG 0.576688 4_4:+45562662 Msa0683140:CDS
GAATAGCCACAATCTGTTGG+AGG 0.579129 4_4:-45568018 None:intergenic
AAGCTTGTAGGAAGTTGGCT+AGG 0.591037 4_4:+45562785 Msa0683140:CDS
AATTAAAGATGAAAAGCACT+AGG 0.600562 4_4:-45568330 None:intergenic
TGGTTGGTTGGAAGAGAGAG+TGG 0.610133 4_4:+45562714 Msa0683140:CDS
CTATCAATTCCAATCCTAGG+AGG 0.622769 4_4:+45562409 Msa0683140:CDS
CAAGGAGCAGGATCACTAGT+GGG 0.627646 4_4:+45568066 Msa0683140:CDS
TGGCTAGTGATGAGTATTGG+GGG 0.638689 4_4:+45562734 Msa0683140:CDS
CAACTATGTAAACAATGACA+AGG 0.640187 4_4:-45568230 None:intergenic
TCAAGGAGCAGGATCACTAG+TGG 0.640470 4_4:+45568065 Msa0683140:CDS
ATGAACCTTATGGTGAAGCA+AGG 0.655059 4_4:+45568292 Msa0683140:CDS
AACGTAACAAGAAAGTGTTA+CGG 0.663996 4_4:-45562555 None:intergenic
TGACTAAGAACATGACAACA+AGG 0.676649 4_4:-45562582 None:intergenic
CAAAGTCATACATACTACAA+CGG 0.678267 4_4:-45568424 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+AGG + chr4_4:45567886-45567905 Msa0683140:intron 0.0%
!!! ATATTTTATTCCATTTTTTT+AGG + chr4_4:45562881-45562900 Msa0683140:intron 10.0%
!!! TTTTTATTTGAAAGAAAATA+TGG + chr4_4:45562971-45562990 Msa0683140:intron 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr4_4:45563126-45563145 Msa0683140:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr4_4:45563127-45563146 Msa0683140:intron 10.0%
!!! TAAAAAATTCCAAATTTTTT+CGG - chr4_4:45563903-45563922 None:intergenic 10.0%
!!! TGAATTTTTACATTTTTTTA+TGG + chr4_4:45563942-45563961 Msa0683140:intron 10.0%
!! ACTAAAATTAACTTAAAAAT+AGG + chr4_4:45564072-45564091 Msa0683140:intron 10.0%
!! CTAAAATTAACTTAAAAATA+GGG + chr4_4:45564073-45564092 Msa0683140:intron 10.0%
!! GAAAAATTTGTATATTTATA+GGG + chr4_4:45564164-45564183 Msa0683140:intron 10.0%
!!! ATTTAATCTCATTTTTATAA+GGG + chr4_4:45564282-45564301 Msa0683140:intron 10.0%
!!! AAATTTAAAAAATTTGGTTT+TGG + chr4_4:45564598-45564617 Msa0683140:intron 10.0%
!! GATATAATATAAGATATTAT+AGG + chr4_4:45565585-45565604 Msa0683140:intron 10.0%
!!! ATTTTCATAAGTTTAAAATT+CGG - chr4_4:45565922-45565941 None:intergenic 10.0%
!!! TGACTTAATTTTAATTTTTT+TGG + chr4_4:45566109-45566128 Msa0683140:intron 10.0%
!!! AATATTTATGATTTTTTTAG+GGG + chr4_4:45566720-45566739 Msa0683140:intron 10.0%
!!! TATTATTATGATATTTTTGA+AGG - chr4_4:45566809-45566828 None:intergenic 10.0%
!!! TGTTCTCATTTTTTTTTTTT+TGG - chr4_4:45562347-45562366 None:intergenic 15.0%
!! AAAATTGTGTCAATTAAATT+GGG - chr4_4:45563091-45563110 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr4_4:45563128-45563147 Msa0683140:intron 15.0%
!! AAAGTGAAATATATTGTATT+GGG + chr4_4:45563151-45563170 Msa0683140:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr4_4:45563191-45563210 Msa0683140:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr4_4:45563192-45563211 Msa0683140:intron 15.0%
!!! ACTTTTTTAAATCGTTTTAA+AGG + chr4_4:45563409-45563428 Msa0683140:intron 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG + chr4_4:45564104-45564123 Msa0683140:intron 15.0%
!! CGAAAAATTTGTATATTTAT+AGG + chr4_4:45564163-45564182 Msa0683140:intron 15.0%
!!! GATTTAATCTCATTTTTATA+AGG + chr4_4:45564281-45564300 Msa0683140:intron 15.0%
!!! ACCAAAAAAATATTTTTACA+GGG - chr4_4:45564566-45564585 None:intergenic 15.0%
!!! AACCAAAAAAATATTTTTAC+AGG - chr4_4:45564567-45564586 None:intergenic 15.0%
!!! AAATATGAATCAATTTTACA+AGG - chr4_4:45564645-45564664 None:intergenic 15.0%
!!! TTAGTTTTTAAAGAAAAGTA+TGG + chr4_4:45564694-45564713 Msa0683140:intron 15.0%
!!! TAGTTTTTAAAGAAAAGTAT+GGG + chr4_4:45564695-45564714 Msa0683140:intron 15.0%
!! ATAATTGAGAATTGATATTA+TGG + chr4_4:45565151-45565170 Msa0683140:intron 15.0%
!! TTTAATACACATAAAAACAA+AGG - chr4_4:45565347-45565366 None:intergenic 15.0%
!! GAACAAATATAAAATCAAAT+AGG + chr4_4:45565471-45565490 Msa0683140:intron 15.0%
!!! AATTTTTTTGGTTTATGTAT+TGG + chr4_4:45566121-45566140 Msa0683140:intron 15.0%
!!! ATGATTTTAGTAAAAGTATT+TGG + chr4_4:45566428-45566447 Msa0683140:intron 15.0%
!!! TATGTTCTTTTTTTTTTTTG+TGG - chr4_4:45567504-45567523 None:intergenic 15.0%
!! TTACATCTAATCATAATAAA+TGG + chr4_4:45568547-45568566 Msa0683140:three_prime_UTR 15.0%
!!! CTCATTTTTTTTTTTTTGGT+AGG - chr4_4:45562343-45562362 None:intergenic 20.0%
!! GAAATTCCTATTATGATTAA+TGG - chr4_4:45562493-45562512 None:intergenic 20.0%
!! CAAAATTGTGTCAATTAAAT+TGG - chr4_4:45563092-45563111 None:intergenic 20.0%
!! GAAAGTGAAATATATTGTAT+TGG + chr4_4:45563150-45563169 Msa0683140:intron 20.0%
!!! TTGAAATGAGTCAATTATTT+TGG + chr4_4:45563238-45563257 Msa0683140:intron 20.0%
!!! TGAAATGAGTCAATTATTTT+GGG + chr4_4:45563239-45563258 Msa0683140:intron 20.0%
!! ATATAAGTTCAATCAAACTA+GGG + chr4_4:45563683-45563702 Msa0683140:intron 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG - chr4_4:45563726-45563745 None:intergenic 20.0%
!!! TGAAAAGTTGGTATATTTAT+AGG - chr4_4:45563727-45563746 None:intergenic 20.0%
!!! TGAAGATGAAAAATTTTTGA+GGG - chr4_4:45563786-45563805 None:intergenic 20.0%
!!! AAATTTTTCATCTTCACTTT+TGG + chr4_4:45563790-45563809 Msa0683140:intron 20.0%
!! TACATATGAGTTTACTTTAA+AGG - chr4_4:45563821-45563840 None:intergenic 20.0%
!!! AAATTTTCAATCACTACTTT+TGG - chr4_4:45564100-45564119 None:intergenic 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG + chr4_4:45564103-45564122 Msa0683140:intron 20.0%
!! AAGTTGAATTATAGTTTGAT+GGG - chr4_4:45564207-45564226 None:intergenic 20.0%
!! TTAAATCCTAAATTATGTCT+TGG + chr4_4:45564355-45564374 Msa0683140:intron 20.0%
!!! CAAAGATAGAAATATTTTGT+TGG - chr4_4:45564424-45564443 None:intergenic 20.0%
!!! TCCCTGTAAAAATATTTTTT+TGG + chr4_4:45564562-45564581 Msa0683140:intron 20.0%
!!! CCAAATTTTTTAAATTTGCA+GGG - chr4_4:45564595-45564614 None:intergenic 20.0%
!!! ACCAAATTTTTTAAATTTGC+AGG - chr4_4:45564596-45564615 None:intergenic 20.0%
!! AATTATCAAACCAACATTAT+TGG - chr4_4:45565137-45565156 None:intergenic 20.0%
!! TTTCTTAAGAAATGTGAAAA+AGG - chr4_4:45565271-45565290 None:intergenic 20.0%
!! ACAAGTTAGTAGTATTAATT+AGG + chr4_4:45565388-45565407 Msa0683140:intron 20.0%
!! CAAGTTAGTAGTATTAATTA+GGG + chr4_4:45565389-45565408 Msa0683140:intron 20.0%
!! AAGTTAGTAGTATTAATTAG+GGG + chr4_4:45565390-45565409 Msa0683140:intron 20.0%
!! CAAATATAAAATCAAATAGG+TGG + chr4_4:45565474-45565493 Msa0683140:intron 20.0%
!!! CATAGTTATGTTTTATGAAT+AGG - chr4_4:45565694-45565713 None:intergenic 20.0%
!!! TAATTTGAAACAAGAAGATA+TGG + chr4_4:45565759-45565778 Msa0683140:intron 20.0%
!! TAATCACCAATAAAGAAAAA+AGG - chr4_4:45566046-45566065 None:intergenic 20.0%
!! CAAATTAAAGTCATAAAGAT+GGG - chr4_4:45566158-45566177 None:intergenic 20.0%
!! CCAGAATATAATTTGAATAT+AGG - chr4_4:45566277-45566296 None:intergenic 20.0%
!! CCTATATTCAAATTATATTC+TGG + chr4_4:45566274-45566293 Msa0683140:intron 20.0%
!! AAAGTAGAAATACTTATGAA+TGG + chr4_4:45566327-45566346 Msa0683140:intron 20.0%
!! AAGTAGAAATACTTATGAAT+GGG + chr4_4:45566328-45566347 Msa0683140:intron 20.0%
!! ATATTGGATAGTAATTAGTT+TGG - chr4_4:45566596-45566615 None:intergenic 20.0%
!! TAAAGATTTCAACTCTTTAA+AGG + chr4_4:45567299-45567318 Msa0683140:intron 20.0%
!! AACAATGTATAAAATATGCA+AGG + chr4_4:45567456-45567475 Msa0683140:intron 20.0%
!! TCTCATCACATTAATAAAAA+GGG - chr4_4:45567731-45567750 None:intergenic 20.0%
!! TTCTCATCACATTAATAAAA+AGG - chr4_4:45567732-45567751 None:intergenic 20.0%
!! TTATTAATGTGATGAGAATT+AGG + chr4_4:45567734-45567753 Msa0683140:intron 20.0%
!! TATTAATGTGATGAGAATTA+GGG + chr4_4:45567735-45567754 Msa0683140:intron 20.0%
!!! TACTCATTTTGTATATTTGT+TGG + chr4_4:45568479-45568498 Msa0683140:three_prime_UTR 20.0%
!! GATTGGAATTGATAGTAAAA+AGG - chr4_4:45562404-45562423 None:intergenic 25.0%
! AATATTTGCTTATGTTGTGA+CGG + chr4_4:45562627-45562646 Msa0683140:CDS 25.0%
! GTATTTGGATTATTATTTGC+AGG + chr4_4:45562684-45562703 Msa0683140:CDS 25.0%
! TATTATTTGCAGGATTATTC+TGG + chr4_4:45562694-45562713 Msa0683140:CDS 25.0%
!! GAAGATTAGTTCTTGTATAA+GGG + chr4_4:45562756-45562775 Msa0683140:CDS 25.0%
! ATATAAGAACATACCTGAAT+AGG - chr4_4:45562865-45562884 None:intergenic 25.0%
! TTGAAAGAAAATATGGAGTT+AGG + chr4_4:45562978-45562997 Msa0683140:intron 25.0%
!!! TTAGGAATTTTTGGGATTTT+AGG + chr4_4:45563008-45563027 Msa0683140:intron 25.0%
!!! GGCACTTTTTTTTAGAAAAT+GGG + chr4_4:45563260-45563279 Msa0683140:intron 25.0%
! AATGTTGCAAAAATGATAGT+AGG + chr4_4:45563458-45563477 Msa0683140:intron 25.0%
! TGATTGAACTTATATCAAGT+CGG - chr4_4:45563678-45563697 None:intergenic 25.0%
! GATATAAGTTCAATCAAACT+AGG + chr4_4:45563682-45563701 Msa0683140:intron 25.0%
!! ACTAGGGTTAAATATGTTTT+TGG + chr4_4:45563699-45563718 Msa0683140:intron 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG - chr4_4:45564133-45564152 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG - chr4_4:45564132-45564151 None:intergenic 25.0%
!! GTGAAGATGAAAAATTTTTG+AGG - chr4_4:45563787-45563806 None:intergenic 25.0%
!! TATGAGTTTACTTTAAAGGA+GGG - chr4_4:45563817-45563836 None:intergenic 25.0%
!! ATATGAGTTTACTTTAAAGG+AGG - chr4_4:45563818-45563837 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG + chr4_4:45564132-45564151 Msa0683140:intron 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG + chr4_4:45564133-45564152 Msa0683140:intron 25.0%
!!! TGATGGGTTAAATATGTTTT+TGG - chr4_4:45564191-45564210 None:intergenic 25.0%
! GAAGTTGAATTATAGTTTGA+TGG - chr4_4:45564208-45564227 None:intergenic 25.0%
!! GAAGCAAAAATTTAGTTCAT+CGG - chr4_4:45564245-45564264 None:intergenic 25.0%
! ACAAGTTAAGAATCTAAAAG+TGG + chr4_4:45564330-45564349 Msa0683140:intron 25.0%
! ATCTTTCCAAGACATAATTT+AGG - chr4_4:45564364-45564383 None:intergenic 25.0%
! CCCTGCAAATTTAAAAAATT+TGG + chr4_4:45564592-45564611 Msa0683140:intron 25.0%
!!! TCACAAAAGTTGTTGATTTT+TGG + chr4_4:45564904-45564923 Msa0683140:intron 25.0%
! AAATAAAGAACCACAACTTT+AGG - chr4_4:45565030-45565049 None:intergenic 25.0%
! TAACGGTGCATTAAAAAAAA+CGG + chr4_4:45565079-45565098 Msa0683140:intron 25.0%
! AAAAACGACTTTGACAAAAA+TGG + chr4_4:45565107-45565126 Msa0683140:intron 25.0%
! ATTGAGAATTGATATTATGG+TGG + chr4_4:45565154-45565173 Msa0683140:intron 25.0%
!!! ATATATGATGATGACACTTT+TGG - chr4_4:45565194-45565213 None:intergenic 25.0%
! AGAAATGTGAAAAAGGTAAA+GGG - chr4_4:45565264-45565283 None:intergenic 25.0%
! AAGAAATGTGAAAAAGGTAA+AGG - chr4_4:45565265-45565284 None:intergenic 25.0%
! CATAAAAACAAAGGACAATT+TGG - chr4_4:45565338-45565357 None:intergenic 25.0%
! TCTCATAACAATCCATTATA+GGG - chr4_4:45565665-45565684 None:intergenic 25.0%
! ATCTCATAACAATCCATTAT+AGG - chr4_4:45565666-45565685 None:intergenic 25.0%
! TGAAAATATGTGTTTACGTA+TGG + chr4_4:45565846-45565865 Msa0683140:intron 25.0%
! GAAAATATGTGTTTACGTAT+GGG + chr4_4:45565847-45565866 Msa0683140:intron 25.0%
! GTCTCAAATAGTAAAACTTT+GGG - chr4_4:45565900-45565919 None:intergenic 25.0%
! CCAAATTAAAGTCATAAAGA+TGG - chr4_4:45566159-45566178 None:intergenic 25.0%
! CCATCTTTATGACTTTAATT+TGG + chr4_4:45566156-45566175 Msa0683140:intron 25.0%
!!! CTTTATGACTTTAATTTGGT+TGG + chr4_4:45566160-45566179 Msa0683140:intron 25.0%
!! ATTCTTATGTTTTGTGAGTT+GGG - chr4_4:45566245-45566264 None:intergenic 25.0%
! TACTTTACAAGACCAAAAAA+GGG - chr4_4:45566313-45566332 None:intergenic 25.0%
! AGTAGAAATACTTATGAATG+GGG + chr4_4:45566329-45566348 Msa0683140:intron 25.0%
! TTGTTAAATTGTGAGTTTCA+AGG + chr4_4:45566373-45566392 Msa0683140:intron 25.0%
!! ATTTGGTAGTTGTAACTATT+TGG + chr4_4:45566445-45566464 Msa0683140:intron 25.0%
!!! TTTATGATTTTTTTAGGGGA+TGG + chr4_4:45566724-45566743 Msa0683140:intron 25.0%
! GGTCAATATATTTATGATGA+AGG + chr4_4:45566745-45566764 Msa0683140:intron 25.0%
!!! AATGCTTTAAGTCCTTTTAA+AGG + chr4_4:45566828-45566847 Msa0683140:intron 25.0%
!!! ATGCTTTAAGTCCTTTTAAA+GGG + chr4_4:45566829-45566848 Msa0683140:intron 25.0%
! TATTAAACTGCAATTGCTTT+GGG - chr4_4:45567086-45567105 None:intergenic 25.0%
! TATATGTTTGTTTGTGAGAA+AGG + chr4_4:45567112-45567131 Msa0683140:intron 25.0%
! CGTTGTTTGATTCTAAATTT+AGG + chr4_4:45567152-45567171 Msa0683140:intron 25.0%
! TTTGATTCTAAATTTAGGAG+TGG + chr4_4:45567157-45567176 Msa0683140:intron 25.0%
!! ATTTGAGTCTTTTAACCATT+TGG + chr4_4:45567232-45567251 Msa0683140:intron 25.0%
!! TTAACCATTTGGTTTAAGAT+TGG + chr4_4:45567243-45567262 Msa0683140:intron 25.0%
! GTTCTAATACTAACTAACAT+AGG - chr4_4:45567395-45567414 None:intergenic 25.0%
!!! TTTTTTTTTTTTGTGGTGGT+CGG - chr4_4:45567497-45567516 None:intergenic 25.0%
!!! GTTCTTTTTTTTTTTTGTGG+TGG - chr4_4:45567501-45567520 None:intergenic 25.0%
! CAATATATATAGTACGACTA+CGG + chr4_4:45567773-45567792 Msa0683140:intron 25.0%
! GACTGTAGATAAACAAAAAA+AGG - chr4_4:45567985-45568004 None:intergenic 25.0%
!!! TTTTTTGTTTATCTACAGTC+TGG + chr4_4:45567985-45568004 Msa0683140:intron 25.0%
! AATCATAACAAAGTTGTTGT+TGG - chr4_4:45568125-45568144 None:intergenic 25.0%
! ATATCGAAACAACAAAAAGA+TGG + chr4_4:45568263-45568282 Msa0683140:CDS 25.0%
!!! AATTAAAGATGAAAAGCACT+AGG - chr4_4:45568333-45568352 None:intergenic 25.0%
!!! AGCTTTAAGCTATTTATGTT+AGG + chr4_4:45568370-45568389 Msa0683140:three_prime_UTR 25.0%
!! GCTTTAAGCTATTTATGTTA+GGG + chr4_4:45568371-45568390 Msa0683140:three_prime_UTR 25.0%
ATTTATAGAAGAAGAGTTGG+TGG - chr4_4:45562244-45562263 None:intergenic 30.0%
GAGATTTATAGAAGAAGAGT+TGG - chr4_4:45562247-45562266 None:intergenic 30.0%
! TTTTGGTAGGTGAATTTCTT+TGG - chr4_4:45562330-45562349 None:intergenic 30.0%
AGAACAAGTAACCACTTAAT+TGG + chr4_4:45562361-45562380 Msa0683140:CDS 30.0%
AGTTTAGTAGACCAATTAAG+TGG - chr4_4:45562375-45562394 None:intergenic 30.0%
TTACTATCAATTCCAATCCT+AGG + chr4_4:45562406-45562425 Msa0683140:CDS 30.0%
ACTGTCTCAAATTTCTTCAA+TGG + chr4_4:45562467-45562486 Msa0683140:CDS 30.0%
CAATGGCCATTAATCATAAT+AGG + chr4_4:45562484-45562503 Msa0683140:CDS 30.0%
CATAATAGGAATTTCCATCA+TGG + chr4_4:45562498-45562517 Msa0683140:CDS 30.0%
!! AACGTAACAAGAAAGTGTTA+CGG - chr4_4:45562558-45562577 None:intergenic 30.0%
! GGAAGATTAGTTCTTGTATA+AGG + chr4_4:45562755-45562774 Msa0683140:CDS 30.0%
AAGAAAACTCAATCCTATTC+AGG + chr4_4:45562849-45562868 Msa0683140:CDS 30.0%
TCACAAGACACCTAAAAAAA+TGG - chr4_4:45562894-45562913 None:intergenic 30.0%
!!! TTTTTTAGGTGTCTTGTGAA+TGG + chr4_4:45562895-45562914 Msa0683140:intron 30.0%
!!! TTTTTAGGTGTCTTGTGAAT+GGG + chr4_4:45562896-45562915 Msa0683140:intron 30.0%
AAGAAAATATGGAGTTAGGA+AGG + chr4_4:45562982-45563001 Msa0683140:intron 30.0%
!!! GAAGGTGTTTAGGAATTTTT+GGG + chr4_4:45563000-45563019 Msa0683140:intron 30.0%
! TTTAGGAGAGTAGTTTTTCT+AGG + chr4_4:45563025-45563044 Msa0683140:intron 30.0%
TTGTGTCAATTAAATTGGGA+CGG - chr4_4:45563087-45563106 None:intergenic 30.0%
!!! GGGCACTTTTTTTTAGAAAA+TGG + chr4_4:45563259-45563278 Msa0683140:intron 30.0%
CAAAATTCATAGATCTTACC+GGG - chr4_4:45563488-45563507 None:intergenic 30.0%
CCAAAATTCATAGATCTTAC+CGG - chr4_4:45563489-45563508 None:intergenic 30.0%
!! ATCATTTTAACCATGGATCA+TGG - chr4_4:45563535-45563554 None:intergenic 30.0%
!! TGGTTCAATCATTTTAACCA+TGG - chr4_4:45563542-45563561 None:intergenic 30.0%
TGAACTAGTTACCGTTTAAA+TGG + chr4_4:45563646-45563665 Msa0683140:intron 30.0%
GATTGAACTTATATCAAGTC+GGG - chr4_4:45563677-45563696 None:intergenic 30.0%
TTATAGGGACTAAAAGTTGA+AGG + chr4_4:45564119-45564138 Msa0683140:intron 30.0%
AAACTATAATTCAACTTCCG+AGG + chr4_4:45564210-45564229 Msa0683140:intron 30.0%
CAAAATGTCAGATATTTGCA+GGG - chr4_4:45564535-45564554 None:intergenic 30.0%
!!! AAAAATTTGGTTTTGGTCCT+TGG + chr4_4:45564605-45564624 Msa0683140:intron 30.0%
AGGACTAAAACAAAATACCA+AGG - chr4_4:45564625-45564644 None:intergenic 30.0%
! CCAATTTTCAAATAGTGACA+CGG - chr4_4:45564878-45564897 None:intergenic 30.0%
TGTCACTATTTGAAAATTGG+TGG + chr4_4:45564878-45564897 Msa0683140:intron 30.0%
AAATGGCATACCAATAATGT+TGG + chr4_4:45565124-45565143 Msa0683140:intron 30.0%
AAATGTGAAAAAGGTAAAGG+GGG - chr4_4:45565262-45565281 None:intergenic 30.0%
GAAATGTGAAAAAGGTAAAG+GGG - chr4_4:45565263-45565282 None:intergenic 30.0%
! TATTAATTAGGGGCATGTTT+AGG + chr4_4:45565400-45565419 Msa0683140:intron 30.0%
ATGCATCTAGTAATCTGAAA+AGG + chr4_4:45565435-45565454 Msa0683140:intron 30.0%
CTGAAAAGGAGTTTACATTT+AGG + chr4_4:45565449-45565468 Msa0683140:intron 30.0%
CAAATAGGTGGTTACATATA+AGG + chr4_4:45565486-45565505 Msa0683140:intron 30.0%
TTATAGGACAAAGAAAGTGA+TGG + chr4_4:45565601-45565620 Msa0683140:intron 30.0%
GGTCTCAAATAGTAAAACTT+TGG - chr4_4:45565901-45565920 None:intergenic 30.0%
CACCAATAAAGAAAAAAGGT+CGG - chr4_4:45566042-45566061 None:intergenic 30.0%
! TTCTTATGTTTTGTGAGTTG+GGG - chr4_4:45566244-45566263 None:intergenic 30.0%
! CATTCTTATGTTTTGTGAGT+TGG - chr4_4:45566246-45566265 None:intergenic 30.0%
!!! AGAATATCTTCTCCCTTTTT+TGG + chr4_4:45566298-45566317 Msa0683140:intron 30.0%
CTACTTTACAAGACCAAAAA+AGG - chr4_4:45566314-45566333 None:intergenic 30.0%
! AAACTTATAATTTGTCCGTG+CGG - chr4_4:45566355-45566374 None:intergenic 30.0%
TTTGATCACTTTCAGTTAGA+AGG - chr4_4:45566495-45566514 None:intergenic 30.0%
GTGACTGTTAGAGTATATAT+TGG - chr4_4:45566612-45566631 None:intergenic 30.0%
!!! TACTCTAACAGTCACTTTTT+TGG + chr4_4:45566617-45566636 Msa0683140:intron 30.0%
!! AAGGCACTGACTTATTATAT+TGG + chr4_4:45566764-45566783 Msa0683140:intron 30.0%
AAATTGGCAGGAAACTTTAT+AGG - chr4_4:45566900-45566919 None:intergenic 30.0%
TATAAAGTTTCCTGCCAATT+TGG + chr4_4:45566899-45566918 Msa0683140:intron 30.0%
ATACAATCAAAGGACCAAAT+TGG - chr4_4:45566916-45566935 None:intergenic 30.0%
GTATTAAACTGCAATTGCTT+TGG - chr4_4:45567087-45567106 None:intergenic 30.0%
AGATCCAATCTTAAACCAAA+TGG - chr4_4:45567250-45567269 None:intergenic 30.0%
TGTATAAAATATGCAAGGTC+CGG + chr4_4:45567461-45567480 Msa0683140:intron 30.0%
!!! TTTTTTTTTTTGTGGTGGTC+GGG - chr4_4:45567496-45567515 None:intergenic 30.0%
CATATATAAGACACTGAAGA+AGG - chr4_4:45567860-45567879 None:intergenic 30.0%
! TCAACCGTAATTAGAGTTTT+TGG - chr4_4:45567930-45567949 None:intergenic 30.0%
AACTCTAATTACGGTTGATT+AGG + chr4_4:45567932-45567951 Msa0683140:intron 30.0%
CAACTATGTAAACAATGACA+AGG - chr4_4:45568233-45568252 None:intergenic 30.0%
ATGGATAATGATGAACCTTA+TGG + chr4_4:45568282-45568301 Msa0683140:CDS 30.0%
! AGCTATTTATGTTAGGGTTT+TGG + chr4_4:45568377-45568396 Msa0683140:three_prime_UTR 30.0%
! GCTATTTATGTTAGGGTTTT+GGG + chr4_4:45568378-45568397 Msa0683140:three_prime_UTR 30.0%
! CTATTTATGTTAGGGTTTTG+GGG + chr4_4:45568379-45568398 Msa0683140:three_prime_UTR 30.0%
CAAAGTCATACATACTACAA+CGG - chr4_4:45568427-45568446 None:intergenic 30.0%
ACTTTGGATTTAATCTTGCA+AGG + chr4_4:45568441-45568460 Msa0683140:three_prime_UTR 30.0%
! ATCATGGTTGTTTCATTAGC+CGG + chr4_4:45562514-45562533 Msa0683140:CDS 35.0%
TGACTAAGAACATGACAACA+AGG - chr4_4:45562585-45562604 None:intergenic 35.0%
GTTGTCATGTTCTTAGTCAT+TGG + chr4_4:45562586-45562605 Msa0683140:CDS 35.0%
TTAGTCATTGGTGTGCTTAT+TGG + chr4_4:45562598-45562617 Msa0683140:CDS 35.0%
!! CTTATGTTGTGACGGATAAA+GGG + chr4_4:45562635-45562654 Msa0683140:CDS 35.0%
GAAGAAGGGTTATGAATAGA+GGG + chr4_4:45562662-45562681 Msa0683140:CDS 35.0%
!! GGTTATGAATAGAGGGTATT+TGG + chr4_4:45562669-45562688 Msa0683140:CDS 35.0%
ATTTGCAGGATTATTCTGGT+TGG + chr4_4:45562698-45562717 Msa0683140:CDS 35.0%
!! TAAGGGATTCTAAAGCTTGT+AGG + chr4_4:45562773-45562792 Msa0683140:CDS 35.0%
!! TTCTAAAGCTTGTAGGAAGT+TGG + chr4_4:45562780-45562799 Msa0683140:CDS 35.0%
CTTGTGAATGGGTAATAATC+TGG + chr4_4:45562907-45562926 Msa0683140:intron 35.0%
!!! GGAAGGTGTTTAGGAATTTT+TGG + chr4_4:45562999-45563018 Msa0683140:intron 35.0%
! TTCTAGGAACCAGTGTAATT+AGG + chr4_4:45563041-45563060 Msa0683140:intron 35.0%
TCTAGGAACCAGTGTAATTA+GGG + chr4_4:45563042-45563061 Msa0683140:intron 35.0%
AGAAAATGGGTCAGTTATTC+CGG + chr4_4:45563273-45563292 Msa0683140:intron 35.0%
! CCGGTAAGATCTATGAATTT+TGG + chr4_4:45563486-45563505 Msa0683140:intron 35.0%
GTCGGGTTAAACCATTTAAA+CGG - chr4_4:45563660-45563679 None:intergenic 35.0%
GAGGGACTAAAATGAAAAGT+TGG - chr4_4:45563739-45563758 None:intergenic 35.0%
TTTGAGGGACTAAAAGTTGA+AGG - chr4_4:45563771-45563790 None:intergenic 35.0%
GAATCTCTGCCGAAAAAATT+TGG + chr4_4:45563891-45563910 Msa0683140:intron 35.0%
! TTCATCGGTTAATTTGACCT+CGG - chr4_4:45564230-45564249 None:intergenic 35.0%
!! ATTCTTAACTTGTGCCCTTA+GGG - chr4_4:45564323-45564342 None:intergenic 35.0%
!! AATGTTAACTTGTGCCTTGA+GGG - chr4_4:45564462-45564481 None:intergenic 35.0%
!! AAATGTTAACTTGTGCCTTG+AGG - chr4_4:45564463-45564482 None:intergenic 35.0%
CCAAAATGTCAGATATTTGC+AGG - chr4_4:45564536-45564555 None:intergenic 35.0%
! CCTGCAAATATCTGACATTT+TGG + chr4_4:45564533-45564552 Msa0683140:intron 35.0%
! AAAAGTATGGGTAGTTGCTT+TGG + chr4_4:45564707-45564726 Msa0683140:intron 35.0%
GTCACATAGGTTGTCAAAAA+TGG - chr4_4:45564797-45564816 None:intergenic 35.0%
GAGAGATAAAGTTGTCACAT+AGG - chr4_4:45564810-45564829 None:intergenic 35.0%
ACTTTCTCTCTCTATTGCTT+TGG + chr4_4:45564849-45564868 Msa0683140:intron 35.0%
! CCGTGTCACTATTTGAAAAT+TGG + chr4_4:45564875-45564894 Msa0683140:intron 35.0%
ATGCACCGTTAAGTTAACAT+GGG - chr4_4:45565070-45565089 None:intergenic 35.0%
AATGCACCGTTAAGTTAACA+TGG - chr4_4:45565071-45565090 None:intergenic 35.0%
GTAAAGGGGGTTTACATATA+GGG - chr4_4:45565249-45565268 None:intergenic 35.0%
TAGGTGGTTACATATAAGGA+CGG + chr4_4:45565490-45565509 Msa0683140:intron 35.0%
! ACAAAGAAAGTGATGGAATG+AGG + chr4_4:45565608-45565627 Msa0683140:intron 35.0%
GAAACAAGAAGATATGGTGA+TGG + chr4_4:45565765-45565784 Msa0683140:intron 35.0%
ATGTGTTTACGTATGGGATT+AGG + chr4_4:45565853-45565872 Msa0683140:intron 35.0%
!!! CACCGACCTTTTTTCTTTAT+TGG + chr4_4:45566037-45566056 Msa0683140:intron 35.0%
GTCATAAAGATGGGTGTAAA+TGG - chr4_4:45566149-45566168 None:intergenic 35.0%
!! TCTTATGTTTTGTGAGTTGG+GGG - chr4_4:45566243-45566262 None:intergenic 35.0%
TCAGTTAGAAGGATGTATGA+AGG - chr4_4:45566484-45566503 None:intergenic 35.0%
ACGTGTGATATCCCTTTAAA+AGG - chr4_4:45566843-45566862 None:intergenic 35.0%
! AACGCCACAACATTTTTCTA+TGG + chr4_4:45566994-45567013 Msa0683140:intron 35.0%
! ACGCCACAACATTTTTCTAT+GGG + chr4_4:45566995-45567014 Msa0683140:intron 35.0%
TGTTTGTTTGTGAGAAAGGA+AGG + chr4_4:45567116-45567135 Msa0683140:intron 35.0%
GTTTGTTTGTGAGAAAGGAA+GGG + chr4_4:45567117-45567136 Msa0683140:intron 35.0%
TTTGTTTGTGAGAAAGGAAG+GGG + chr4_4:45567118-45567137 Msa0683140:intron 35.0%
! TTGGTTTAAGATTGGATCTC+TGG + chr4_4:45567251-45567270 Msa0683140:intron 35.0%
GTATAAAATATGCAAGGTCC+GGG + chr4_4:45567462-45567481 Msa0683140:intron 35.0%
TATAAAATATGCAAGGTCCG+GGG + chr4_4:45567463-45567482 Msa0683140:intron 35.0%
!!! TTTTTTTTTTGTGGTGGTCG+GGG - chr4_4:45567495-45567514 None:intergenic 35.0%
GGAGCCAAAAACTCTAATTA+CGG + chr4_4:45567923-45567942 Msa0683140:intron 35.0%
AGGACAACAGTAAACATGTA+TGG - chr4_4:45567965-45567984 None:intergenic 35.0%
CGTTGTAGTATGTATGACTT+TGG + chr4_4:45568425-45568444 Msa0683140:three_prime_UTR 35.0%
CTATCAATTCCAATCCTAGG+AGG + chr4_4:45562409-45562428 Msa0683140:CDS 40.0%
GGCTAATGAAACAACCATGA+TGG - chr4_4:45562515-45562534 None:intergenic 40.0%
!! TTTCATTAGCCGGTTTTGCA+GGG + chr4_4:45562524-45562543 Msa0683140:CDS 40.0%
!! GCTTATGTTGTGACGGATAA+AGG + chr4_4:45562634-45562653 Msa0683140:CDS 40.0%
GGAAGAAGGGTTATGAATAG+AGG + chr4_4:45562661-45562680 Msa0683140:CDS 40.0%
AGTGGCTAGTGATGAGTATT+GGG + chr4_4:45562732-45562751 Msa0683140:CDS 40.0%
AAGAACATATCAGCAGTCTC+AGG - chr4_4:45562826-45562845 None:intergenic 40.0%
!! ATGGAGTTAGGAAGGTGTTT+AGG + chr4_4:45562990-45563009 Msa0683140:intron 40.0%
GCTAAAGACCCTAATTACAC+TGG - chr4_4:45563053-45563072 None:intergenic 40.0%
TGTCAATTAAATTGGGACGG+AGG - chr4_4:45563084-45563103 None:intergenic 40.0%
AAAATGATAGTAGGTCGACC+CGG + chr4_4:45563467-45563486 Msa0683140:intron 40.0%
CTAAGTTCAACCATGATCCA+TGG + chr4_4:45563522-45563541 Msa0683140:intron 40.0%
!! GATTCTTAACTTGTGCCCTT+AGG - chr4_4:45564324-45564343 None:intergenic 40.0%
!! TTTCTTAACTTGTGCCCTCA+AGG + chr4_4:45564445-45564464 Msa0683140:intron 40.0%
TAGATCTGACTCTTGCAGTA+TGG + chr4_4:45564960-45564979 Msa0683140:intron 40.0%
TCGTCAATCTCCTAAAGTTG+TGG + chr4_4:45565017-45565036 Msa0683140:intron 40.0%
GCATCCCCATGTTAACTTAA+CGG + chr4_4:45565062-45565081 Msa0683140:intron 40.0%
TGCACCGTTAAGTTAACATG+GGG - chr4_4:45565069-45565088 None:intergenic 40.0%
GGTAAAGGGGGTTTACATAT+AGG - chr4_4:45565250-45565269 None:intergenic 40.0%
TGGTTACATATAAGGACGGA+GGG + chr4_4:45565494-45565513 Msa0683140:intron 40.0%
! AGAAAGTGATGGAATGAGGT+AGG + chr4_4:45565612-45565631 Msa0683140:intron 40.0%
! GAAAGTGATGGAATGAGGTA+GGG + chr4_4:45565613-45565632 Msa0683140:intron 40.0%
ATCCATTATAGGGTGAAACG+TGG - chr4_4:45565655-45565674 None:intergenic 40.0%
!! ACAAGAAGATATGGTGATGG+AGG + chr4_4:45565768-45565787 Msa0683140:intron 40.0%
AATCAAAGGACCAAATTGGC+AGG - chr4_4:45566912-45566931 None:intergenic 40.0%
TGGTCCTTTGATTGTATGAG+TGG + chr4_4:45566919-45566938 Msa0683140:intron 40.0%
GTAATCCATGCCACAAAACA+AGG + chr4_4:45566958-45566977 Msa0683140:intron 40.0%
! CGCCACAACATTTTTCTATG+GGG + chr4_4:45566996-45567015 Msa0683140:intron 40.0%
TGCCCCATAGAAAAATGTTG+TGG - chr4_4:45567001-45567020 None:intergenic 40.0%
TGTAGTAGTCTAATAGCGAC+AGG + chr4_4:45567023-45567042 Msa0683140:intron 40.0%
GTAGTAGTCTAATAGCGACA+GGG + chr4_4:45567024-45567043 Msa0683140:intron 40.0%
! CGATGTTTGTTAGCACAGTT+TGG + chr4_4:45567600-45567619 Msa0683140:intron 40.0%
! CGATGTTTGTTAGCACAGTT+TGG + chr4_4:45567600-45567619 Msa0683140:intron 40.0%
TAAGACACTGAAGAAGGCAA+GGG - chr4_4:45567854-45567873 None:intergenic 40.0%
ATAAGACACTGAAGAAGGCA+AGG - chr4_4:45567855-45567874 None:intergenic 40.0%
TACGAATAGCCACAATCTGT+TGG - chr4_4:45568024-45568043 None:intergenic 40.0%
CGTATCAAAACGAGACAGTA+TGG + chr4_4:45568040-45568059 Msa0683140:CDS 40.0%
AACGAGACAGTATGGATTCA+AGG + chr4_4:45568048-45568067 Msa0683140:CDS 40.0%
! TCTTCCATTTGTTGCAGTCA+GGG - chr4_4:45568098-45568117 None:intergenic 40.0%
! TTCTTCCATTTGTTGCAGTC+AGG - chr4_4:45568099-45568118 None:intergenic 40.0%
GATTGTGATTCTTGCAAAGC+TGG + chr4_4:45568141-45568160 Msa0683140:CDS 40.0%
! TTGGTAGTCTCAAGAAGAGT+TGG + chr4_4:45568169-45568188 Msa0683140:CDS 40.0%
ATGAACCTTATGGTGAAGCA+AGG + chr4_4:45568292-45568311 Msa0683140:CDS 40.0%
!!! TATGTTAGGGTTTTGGGGAT+TGG + chr4_4:45568384-45568403 Msa0683140:three_prime_UTR 40.0%
TCAATTCCAATCCTAGGAGG+TGG + chr4_4:45562412-45562431 Msa0683140:CDS 45.0%
CATATTCCACCTCCTAGGAT+TGG - chr4_4:45562421-45562440 None:intergenic 45.0%
CAATCCTAGGAGGTGGAATA+TGG + chr4_4:45562419-45562438 Msa0683140:CDS 45.0%
TTAGCCATATTCCACCTCCT+AGG - chr4_4:45562426-45562445 None:intergenic 45.0%
!! GTTTCATTAGCCGGTTTTGC+AGG + chr4_4:45562523-45562542 Msa0683140:CDS 45.0%
!! TTCATTAGCCGGTTTTGCAG+GGG + chr4_4:45562525-45562544 Msa0683140:CDS 45.0%
GGATAAAGGGTCTGGAAGAA+GGG + chr4_4:45562648-45562667 Msa0683140:CDS 45.0%
! GCAGGATTATTCTGGTTGGT+TGG + chr4_4:45562702-45562721 Msa0683140:CDS 45.0%
GAGTGGCTAGTGATGAGTAT+TGG + chr4_4:45562731-45562750 Msa0683140:CDS 45.0%
! GTGGCTAGTGATGAGTATTG+GGG + chr4_4:45562733-45562752 Msa0683140:CDS 45.0%
!! TGGCTAGTGATGAGTATTGG+GGG + chr4_4:45562734-45562753 Msa0683140:CDS 45.0%
AAGCTTGTAGGAAGTTGGCT+AGG + chr4_4:45562785-45562804 Msa0683140:CDS 45.0%
ATGGGTCAGTTATTCCGGAA+CGG + chr4_4:45563278-45563297 Msa0683140:intron 45.0%
TAGTGTTACCTTGTGCCCTA+AGG + chr4_4:45564305-45564324 Msa0683140:intron 45.0%
AGTGTTACCTTGTGCCCTAA+GGG + chr4_4:45564306-45564325 Msa0683140:intron 45.0%
AGGGGGTTTACATATAGGGA+CGG - chr4_4:45565245-45565264 None:intergenic 45.0%
GTGGTTACATATAAGGACGG+AGG + chr4_4:45565493-45565512 Msa0683140:intron 45.0%
GGGAGCTTGTAAAAAGCAGA+AGG - chr4_4:45566223-45566242 None:intergenic 45.0%
CCTGCCACTCATACAATCAA+AGG - chr4_4:45566926-45566945 None:intergenic 45.0%
CCTTTGATTGTATGAGTGGC+AGG + chr4_4:45566923-45566942 Msa0683140:intron 45.0%
!!! TCAAAAGCGGCCTTGTTTTG+TGG - chr4_4:45566971-45566990 None:intergenic 45.0%
!!! CAAAACAAGGCCGCTTTTGA+TGG + chr4_4:45566971-45566990 Msa0683140:intron 45.0%
TTGTGGCGTTCCATCAAAAG+CGG - chr4_4:45566984-45567003 None:intergenic 45.0%
CCAATTGAACTAAGCTCACG+AGG - chr4_4:45567432-45567451 None:intergenic 45.0%
CCTCGTGAGCTTAGTTCAAT+TGG + chr4_4:45567429-45567448 Msa0683140:intron 45.0%
TAGATGCTCTATAGTCGCAG+AGG - chr4_4:45567703-45567722 None:intergenic 45.0%
AAGACACTGAAGAAGGCAAG+GGG - chr4_4:45567853-45567872 None:intergenic 45.0%
GAATAGCCACAATCTGTTGG+AGG - chr4_4:45568021-45568040 None:intergenic 45.0%
ACAGTATGGATTCAAGGAGC+AGG + chr4_4:45568054-45568073 Msa0683140:CDS 45.0%
TCTTGCAAAGCTGGTGTACT+TGG + chr4_4:45568150-45568169 Msa0683140:CDS 45.0%
GTAGTCTCAAGAAGAGTTGG+AGG + chr4_4:45568172-45568191 Msa0683140:CDS 45.0%
GTCATCCTTGCTTCACCATA+AGG - chr4_4:45568300-45568319 None:intergenic 45.0%
!!! ATTTAATTTATTTTAACATA+TGG - chr4_4:45563562-45563581 None:intergenic 5.0%
!!! AAAAAATTCTATTTTTTTTT+TGG + chr4_4:45563996-45564015 Msa0683140:intron 5.0%
!!! AAAAATTCTATTTTTTTTTT+GGG + chr4_4:45563997-45564016 Msa0683140:intron 5.0%
!! TAATTATGTTTATAAAAAAT+GGG - chr4_4:45564486-45564505 None:intergenic 5.0%
!! TTAATTATGTTTATAAAAAA+TGG - chr4_4:45564487-45564506 None:intergenic 5.0%
!!! TTATAAACATAATTAATTTT+AGG + chr4_4:45564491-45564510 Msa0683140:intron 5.0%
!!! AAAATATTTATGATTTTTTT+AGG + chr4_4:45566718-45566737 Msa0683140:intron 5.0%
!!! AAATATTTATGATTTTTTTA+GGG + chr4_4:45566719-45566738 Msa0683140:intron 5.0%
!! GTTGTGACGGATAAAGGGTC+TGG + chr4_4:45562640-45562659 Msa0683140:CDS 50.0%
CGGATAAAGGGTCTGGAAGA+AGG + chr4_4:45562647-45562666 Msa0683140:CDS 50.0%
! TGGTTGGTTGGAAGAGAGAG+TGG + chr4_4:45562714-45562733 Msa0683140:CDS 50.0%
GTCAGTTATTCCGGAACGGA+GGG + chr4_4:45563282-45563301 Msa0683140:intron 50.0%
TATGGAACCCTGCAGCATGT+GGG + chr4_4:45564978-45564997 Msa0683140:intron 50.0%
GGGTTTACATATAGGGACGG+GGG - chr4_4:45565242-45565261 None:intergenic 50.0%
GGGGTTTACATATAGGGACG+GGG - chr4_4:45565243-45565262 None:intergenic 50.0%
GGGGGTTTACATATAGGGAC+GGG - chr4_4:45565244-45565263 None:intergenic 50.0%
TGGAATGAGGTAGGGCCATA+TGG + chr4_4:45565621-45565640 Msa0683140:intron 50.0%
GGAATGAGGTAGGGCCATAT+GGG + chr4_4:45565622-45565641 Msa0683140:intron 50.0%
GGCCACGTTTCACCCTATAA+TGG + chr4_4:45565650-45565669 Msa0683140:intron 50.0%
TACTTATGAATGGGGCCGCA+CGG + chr4_4:45566337-45566356 Msa0683140:intron 50.0%
GTATGAGTGGCAGGACATGT+CGG + chr4_4:45566932-45566951 Msa0683140:intron 50.0%
ATTACCCCTGAACCGTACCT+CGG + chr4_4:45567809-45567828 Msa0683140:intron 50.0%
TGCAAGCCTCCAACAGATTG+TGG + chr4_4:45568012-45568031 Msa0683140:CDS 50.0%
TCAAGGAGCAGGATCACTAG+TGG + chr4_4:45568065-45568084 Msa0683140:CDS 50.0%
CAAGGAGCAGGATCACTAGT+GGG + chr4_4:45568066-45568085 Msa0683140:CDS 50.0%
! CCATTTGTTGCAGTCAGGGT+TGG - chr4_4:45568094-45568113 None:intergenic 50.0%
CCAACCCTGACTGCAACAAA+TGG + chr4_4:45568091-45568110 Msa0683140:CDS 50.0%
GTAACACGCCCCTGCAAAAC+CGG - chr4_4:45562536-45562555 None:intergenic 55.0%
GGTCAGTTATTCCGGAACGG+AGG + chr4_4:45563281-45563300 Msa0683140:intron 55.0%
! GTTTGCTACTCCCTCCGTTC+CGG - chr4_4:45563295-45563314 None:intergenic 55.0%
ACTTGTGCCCTTAGGGCACA+AGG - chr4_4:45564316-45564335 None:intergenic 55.0%
GTATGGAACCCTGCAGCATG+TGG + chr4_4:45564977-45564996 Msa0683140:intron 55.0%
ATGGAACCCTGCAGCATGTG+GGG + chr4_4:45564979-45564998 Msa0683140:intron 55.0%
CATCATCCCCACATGCTGCA+GGG - chr4_4:45564988-45565007 None:intergenic 55.0%
CTGCAGCATGTGGGGATGAT+GGG + chr4_4:45564987-45565006 Msa0683140:intron 55.0%
TGAGGTAGGGCCATATGGGA+CGG + chr4_4:45565626-45565645 Msa0683140:intron 55.0%
!!! AGCGGCCTTGTTTTGTGGCA+TGG - chr4_4:45566966-45566985 None:intergenic 55.0%
TTACCCCTGAACCGTACCTC+GGG + chr4_4:45567810-45567829 Msa0683140:intron 55.0%
CCATCATCCCCACATGCTGC+AGG - chr4_4:45564989-45565008 None:intergenic 60.0%
CCTGCAGCATGTGGGGATGA+TGG + chr4_4:45564986-45565005 Msa0683140:intron 60.0%
AACGTGGCCACCGTCCCATA+TGG - chr4_4:45565639-45565658 None:intergenic 60.0%
TGAAGAAGGCAAGGGGCGAC+GGG - chr4_4:45567846-45567865 None:intergenic 60.0%
CTGAAGAAGGCAAGGGGCGA+CGG - chr4_4:45567847-45567866 None:intergenic 60.0%
GGTAGGGCCATATGGGACGG+TGG + chr4_4:45565629-45565648 Msa0683140:intron 65.0%
GGTGGTCGGGGTTTGAACCC+CGG - chr4_4:45567483-45567502 None:intergenic 65.0%
GGTCCCGAGGTACGGTTCAG+GGG - chr4_4:45567816-45567835 None:intergenic 65.0%
GGGTCCCGAGGTACGGTTCA+GGG - chr4_4:45567817-45567836 None:intergenic 65.0%
GAAGAAGGCAAGGGGCGACG+GGG - chr4_4:45567845-45567864 None:intergenic 65.0%
GGGGTCCCGAGGTACGGTTC+AGG - chr4_4:45567818-45567837 None:intergenic 70.0%
GGTGTGGGGGTCCCGAGGTA+CGG - chr4_4:45567824-45567843 None:intergenic 70.0%
CAAGGGGCGACGGGGTGTGG+GGG - chr4_4:45567837-45567856 None:intergenic 75.0%
GCAAGGGGCGACGGGGTGTG+GGG - chr4_4:45567838-45567857 None:intergenic 75.0%
GGCAAGGGGCGACGGGGTGT+GGG - chr4_4:45567839-45567858 None:intergenic 75.0%
AGGCAAGGGGCGACGGGGTG+TGG - chr4_4:45567840-45567859 None:intergenic 75.0%
! GACGGGGTGTGGGGGTCCCG+AGG - chr4_4:45567829-45567848 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 45562220 45568574 45562220 ID=Msa0683140;Name=Msa0683140
chr4_4 mRNA 45562220 45568574 45562220 ID=Msa0683140-mRNA-1;Parent=Msa0683140;Name=Msa0683140-mRNA-1;_AED=0.02;_eAED=0.02;_QI=138|1|1|1|1|1|2|224|286
chr4_4 exon 45562220 45562870 45562220 ID=Msa0683140-mRNA-1:exon:11042;Parent=Msa0683140-mRNA-1
chr4_4 exon 45568003 45568574 45568003 ID=Msa0683140-mRNA-1:exon:11043;Parent=Msa0683140-mRNA-1
chr4_4 five_prime_UTR 45562220 45562357 45562220 ID=Msa0683140-mRNA-1:five_prime_utr;Parent=Msa0683140-mRNA-1
chr4_4 CDS 45562358 45562870 45562358 ID=Msa0683140-mRNA-1:cds;Parent=Msa0683140-mRNA-1
chr4_4 CDS 45568003 45568350 45568003 ID=Msa0683140-mRNA-1:cds;Parent=Msa0683140-mRNA-1
chr4_4 three_prime_UTR 45568351 45568574 45568351 ID=Msa0683140-mRNA-1:three_prime_utr;Parent=Msa0683140-mRNA-1
Gene Sequence

>Msa0683140

ATGAGAACAAGTAACCACTTAATTGGTCTACTAAACTTCTTAACCTTTTTACTATCAATTCCAATCCTAGGAGGTGGAATATGGCTAAGCAGTAGAGCAAACAACACAGACTGTCTCAAATTTCTTCAATGGCCATTAATCATAATAGGAATTTCCATCATGGTTGTTTCATTAGCCGGTTTTGCAGGGGCGTGTTACCGTAACACTTTCTTGTTACGTTTCTACCTTGTTGTCATGTTCTTAGTCATTGGTGTGCTTATTGGATTTATAATATTTGCTTATGTTGTGACGGATAAAGGGTCTGGAAGAAGGGTTATGAATAGAGGGTATTTGGATTATTATTTGCAGGATTATTCTGGTTGGTTGGAAGAGAGAGTGGCTAGTGATGAGTATTGGGGGAAGATTAGTTCTTGTATAAGGGATTCTAAAGCTTGTAGGAAGTTGGCTAGGAATTTTAATGATGTTCCTGAGACTGCTGATATGTTCTTTCAAAGAAAACTCAATCCTATTCAGTCTGGTTGCTGCAAGCCTCCAACAGATTGTGGCTATTCGTATCAAAACGAGACAGTATGGATTCAAGGAGCAGGATCACTAGTGGGAACCAACCCTGACTGCAACAAATGGAAGAATGACCAACAACAACTTTGTTATGATTGTGATTCTTGCAAAGCTGGTGTACTTGGTAGTCTCAAGAAGAGTTGGAGGAAAGTCTCAGTGATCAATATTGTTGTTATGATCATCCTTGTCATTGTTTACATAGTTGCATATTATGCATATCGAAACAACAAAAAGATGGATAATGATGAACCTTATGGTGAAGCAAGGATGACAAAGTCACAACCTAGTGCTTTTCATCTTTAA

Protein sequence

>Msa0683140

MRTSNHLIGLLNFLTFLLSIPILGGGIWLSSRANNTDCLKFLQWPLIIIGISIMVVSLAGFAGACYRNTFLLRFYLVVMFLVIGVLIGFIIFAYVVTDKGSGRRVMNRGYLDYYLQDYSGWLEERVASDEYWGKISSCIRDSKACRKLARNFNDVPETADMFFQRKLNPIQSGCCKPPTDCGYSYQNETVWIQGAGSLVGTNPDCNKWKNDQQQLCYDCDSCKAGVLGSLKKSWRKVSVINIVVMIILVIVYIVAYYAYRNNKKMDNDEPYGEARMTKSQPSAFHL*