Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299670 | XP_013465075.1 | 90.260 | 154 | 15 | 0 | 21 | 174 | 20 | 173 | 5.42e-86 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299670 | sp|Q9S9U1|LRK71_ARATH | 53.947 | 152 | 67 | 2 | 21 | 171 | 18 | 167 | 4.37e-50 | 175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299670 | A0A072VLS1 | 90.260 | 154 | 15 | 0 | 21 | 174 | 20 | 173 | 2.59e-86 | 278 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0220490 | Msa0299670 | 0.871068 | 9.057434e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299670 | MtrunA17_Chr2g0324171 | 90.260 | 154 | 15 | 0 | 21 | 174 | 20 | 173 | 4.98e-90 | 278 |
| Msa0299670 | MtrunA17_Chr2g0324471 | 71.795 | 195 | 39 | 3 | 1 | 194 | 22 | 201 | 1.72e-87 | 271 |
| Msa0299670 | MtrunA17_Chr2g0324481 | 65.789 | 152 | 49 | 2 | 25 | 175 | 22 | 171 | 1.05e-56 | 190 |
| Msa0299670 | MtrunA17_Chr2g0282271 | 54.023 | 174 | 72 | 4 | 1 | 171 | 1 | 169 | 1.19e-44 | 157 |
| Msa0299670 | MtrunA17_Chr7g0239211 | 43.023 | 172 | 92 | 4 | 4 | 174 | 3 | 169 | 1.01e-33 | 126 |
| Msa0299670 | MtrunA17_Chr7g0239321 | 41.279 | 172 | 95 | 4 | 4 | 174 | 3 | 169 | 7.38e-33 | 124 |
| Msa0299670 | MtrunA17_Chr7g0239331 | 42.442 | 172 | 93 | 4 | 4 | 174 | 3 | 169 | 1.65e-28 | 111 |
| Msa0299670 | MtrunA17_Chr7g0239221 | 40.698 | 172 | 98 | 3 | 4 | 174 | 3 | 171 | 2.19e-28 | 111 |
| Msa0299670 | MtrunA17_Chr7g0239181 | 38.953 | 172 | 99 | 4 | 4 | 174 | 3 | 169 | 6.63e-28 | 110 |
| Msa0299670 | MtrunA17_Chr3g0112111 | 45.000 | 140 | 74 | 2 | 36 | 174 | 40 | 177 | 2.11e-26 | 105 |
| Msa0299670 | MtrunA17_Chr1g0172951 | 40.116 | 172 | 97 | 4 | 4 | 174 | 3 | 169 | 5.45e-26 | 104 |
| Msa0299670 | MtrunA17_Chr7g0239371 | 44.444 | 135 | 71 | 3 | 35 | 168 | 34 | 165 | 6.12e-26 | 104 |
| Msa0299670 | MtrunA17_Chr7g0239191 | 40.909 | 176 | 95 | 4 | 5 | 174 | 28 | 200 | 7.42e-26 | 104 |
| Msa0299670 | MtrunA17_Chr7g0239261 | 39.011 | 182 | 102 | 5 | 5 | 182 | 4 | 180 | 2.46e-25 | 102 |
| Msa0299670 | MtrunA17_Chr7g0239361 | 41.279 | 172 | 96 | 4 | 5 | 174 | 15 | 183 | 2.76e-25 | 102 |
| Msa0299670 | MtrunA17_Chr7g0239381 | 37.853 | 177 | 99 | 7 | 1 | 171 | 1 | 172 | 8.85e-24 | 98.2 |
| Msa0299670 | MtrunA17_Chr7g0239311 | 40.588 | 170 | 94 | 4 | 6 | 174 | 6 | 169 | 9.04e-24 | 98.2 |
| Msa0299670 | MtrunA17_Chr7g0239281 | 35.294 | 170 | 98 | 5 | 17 | 182 | 5 | 166 | 1.39e-23 | 97.4 |
| Msa0299670 | MtrunA17_Chr7g0239171 | 40.116 | 172 | 97 | 4 | 4 | 174 | 3 | 169 | 1.78e-22 | 94.4 |
| Msa0299670 | MtrunA17_Chr4g0058561 | 37.086 | 151 | 92 | 3 | 26 | 174 | 31 | 180 | 4.23e-20 | 87.8 |
| Msa0299670 | MtrunA17_Chr5g0414561 | 37.356 | 174 | 98 | 7 | 1 | 168 | 1 | 169 | 5.64e-20 | 87.4 |
| Msa0299670 | MtrunA17_Chr5g0433941 | 36.232 | 138 | 78 | 3 | 41 | 177 | 45 | 173 | 7.03e-15 | 72.4 |
| Msa0299670 | MtrunA17_Chr5g0407721 | 37.857 | 140 | 76 | 4 | 43 | 173 | 61 | 198 | 7.58e-15 | 72.4 |
| Msa0299670 | MtrunA17_Chr7g0239241 | 30.168 | 179 | 81 | 6 | 6 | 181 | 1 | 138 | 8.74e-14 | 68.9 |
| Msa0299670 | MtrunA17_Chr3g0096161 | 33.566 | 143 | 91 | 3 | 35 | 176 | 48 | 187 | 1.50e-12 | 64.7 |
| Msa0299670 | MtrunA17_Chr8g0366941 | 30.065 | 153 | 105 | 2 | 31 | 182 | 39 | 190 | 3.15e-12 | 64.3 |
| Msa0299670 | MtrunA17_Chr3g0100011 | 29.787 | 188 | 109 | 7 | 5 | 178 | 31 | 209 | 1.81e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299670 | AT4G04960.1 | 53.947 | 152 | 67 | 2 | 21 | 171 | 18 | 167 | 4.44e-51 | 175 |
| Msa0299670 | AT4G28350.1 | 54.777 | 157 | 64 | 4 | 22 | 174 | 20 | 173 | 2.22e-48 | 167 |
| Msa0299670 | AT4G04960.2 | 53.947 | 152 | 67 | 2 | 21 | 171 | 18 | 167 | 2.65e-47 | 163 |
| Msa0299670 | AT3G16530.1 | 37.143 | 175 | 98 | 3 | 11 | 174 | 3 | 176 | 2.66e-31 | 115 |
| Msa0299670 | AT2G37710.1 | 45.695 | 151 | 78 | 3 | 26 | 174 | 27 | 175 | 2.08e-30 | 117 |
| Msa0299670 | AT4G29050.2 | 43.511 | 131 | 72 | 1 | 44 | 174 | 57 | 185 | 1.44e-28 | 112 |
| Msa0299670 | AT3G45440.2 | 37.097 | 186 | 102 | 7 | 11 | 188 | 58 | 236 | 1.68e-28 | 112 |
| Msa0299670 | AT4G29050.1 | 43.511 | 131 | 72 | 1 | 44 | 174 | 43 | 171 | 1.68e-28 | 112 |
| Msa0299670 | AT3G45440.3 | 37.569 | 181 | 98 | 7 | 11 | 183 | 5 | 178 | 2.39e-28 | 111 |
| Msa0299670 | AT3G45440.4 | 37.569 | 181 | 98 | 7 | 11 | 183 | 5 | 178 | 2.39e-28 | 111 |
| Msa0299670 | AT3G45440.1 | 37.569 | 181 | 98 | 7 | 11 | 183 | 5 | 178 | 2.39e-28 | 111 |
| Msa0299670 | AT2G43700.1 | 36.232 | 138 | 86 | 1 | 37 | 174 | 27 | 162 | 5.97e-28 | 110 |
| Msa0299670 | AT4G02420.1 | 47.143 | 140 | 69 | 3 | 36 | 174 | 39 | 174 | 1.96e-27 | 108 |
| Msa0299670 | AT2G43700.3 | 37.037 | 135 | 83 | 1 | 40 | 174 | 6 | 138 | 4.46e-27 | 108 |
| Msa0299670 | AT2G43700.5 | 37.037 | 135 | 83 | 1 | 40 | 174 | 6 | 138 | 4.46e-27 | 108 |
| Msa0299670 | AT2G43700.2 | 37.037 | 135 | 83 | 1 | 40 | 174 | 6 | 138 | 4.46e-27 | 108 |
| Msa0299670 | AT2G43700.4 | 37.037 | 135 | 83 | 1 | 40 | 174 | 6 | 138 | 4.46e-27 | 108 |
| Msa0299670 | AT4G02410.1 | 45.255 | 137 | 72 | 2 | 36 | 171 | 40 | 174 | 1.87e-26 | 106 |
| Msa0299670 | AT5G60310.1 | 36.207 | 174 | 103 | 4 | 6 | 178 | 9 | 175 | 3.92e-26 | 105 |
| Msa0299670 | AT1G53080.1 | 39.011 | 182 | 91 | 7 | 6 | 174 | 11 | 185 | 5.19e-26 | 101 |
| Msa0299670 | AT3G59700.1 | 39.844 | 128 | 75 | 1 | 47 | 174 | 38 | 163 | 5.77e-26 | 105 |
| Msa0299670 | AT5G03350.1 | 34.343 | 198 | 111 | 5 | 11 | 197 | 3 | 192 | 6.68e-26 | 101 |
| Msa0299670 | AT3G53810.1 | 39.744 | 156 | 88 | 4 | 16 | 168 | 17 | 169 | 2.40e-25 | 103 |
| Msa0299670 | AT2G29220.1 | 38.857 | 175 | 96 | 6 | 4 | 174 | 7 | 174 | 4.67e-25 | 102 |
| Msa0299670 | AT3G59730.2 | 38.125 | 160 | 87 | 4 | 16 | 174 | 11 | 159 | 6.37e-25 | 101 |
| Msa0299670 | AT3G59730.1 | 38.125 | 160 | 87 | 4 | 16 | 174 | 11 | 159 | 6.72e-25 | 101 |
| Msa0299670 | AT3G55550.1 | 42.857 | 140 | 76 | 3 | 36 | 174 | 37 | 173 | 7.59e-25 | 101 |
| Msa0299670 | AT3G45430.2 | 37.580 | 157 | 91 | 4 | 24 | 179 | 26 | 176 | 1.54e-24 | 100 |
| Msa0299670 | AT3G45430.3 | 37.580 | 157 | 91 | 4 | 24 | 179 | 26 | 176 | 1.54e-24 | 100 |
| Msa0299670 | AT3G45430.1 | 37.580 | 157 | 91 | 4 | 24 | 179 | 26 | 176 | 1.54e-24 | 100 |
| Msa0299670 | AT2G29250.1 | 40.881 | 159 | 88 | 4 | 20 | 175 | 20 | 175 | 4.62e-24 | 99.4 |
| Msa0299670 | AT3G59740.1 | 40.816 | 147 | 77 | 4 | 28 | 174 | 21 | 157 | 1.46e-23 | 98.2 |
| Msa0299670 | AT3G15356.1 | 37.748 | 151 | 85 | 2 | 32 | 174 | 27 | 176 | 4.75e-23 | 93.6 |
| Msa0299670 | AT5G60300.3 | 34.810 | 158 | 97 | 3 | 24 | 180 | 25 | 177 | 4.18e-22 | 94.0 |
| Msa0299670 | AT2G43690.1 | 35.616 | 146 | 92 | 1 | 29 | 174 | 20 | 163 | 4.35e-22 | 94.0 |
| Msa0299670 | AT2G43690.3 | 35.616 | 146 | 92 | 1 | 29 | 174 | 20 | 163 | 4.35e-22 | 94.0 |
| Msa0299670 | AT5G60300.1 | 34.810 | 158 | 97 | 3 | 24 | 180 | 25 | 177 | 5.03e-22 | 93.6 |
| Msa0299670 | AT5G60300.2 | 34.810 | 158 | 97 | 3 | 24 | 180 | 25 | 177 | 5.03e-22 | 93.6 |
| Msa0299670 | AT5G60280.1 | 36.095 | 169 | 101 | 4 | 6 | 174 | 10 | 171 | 5.90e-22 | 93.6 |
| Msa0299670 | AT5G60320.1 | 32.768 | 177 | 110 | 5 | 6 | 178 | 9 | 180 | 2.13e-21 | 91.7 |
| Msa0299670 | AT1G53070.1 | 46.324 | 136 | 63 | 3 | 37 | 164 | 38 | 171 | 4.03e-21 | 88.6 |
| Msa0299670 | AT1G70110.1 | 36.090 | 133 | 84 | 1 | 36 | 168 | 33 | 164 | 1.51e-20 | 89.4 |
| Msa0299670 | AT1G53060.1 | 38.514 | 148 | 80 | 4 | 37 | 174 | 1 | 147 | 1.96e-20 | 86.3 |
| Msa0299670 | AT3G59750.1 | 35.260 | 173 | 93 | 7 | 8 | 177 | 5 | 161 | 2.97e-20 | 88.6 |
| Msa0299670 | AT2G43690.2 | 38.281 | 128 | 77 | 1 | 47 | 174 | 2 | 127 | 7.10e-20 | 87.4 |
| Msa0299670 | AT5G01550.1 | 37.143 | 175 | 101 | 5 | 1 | 168 | 19 | 191 | 9.58e-20 | 87.0 |
| Msa0299670 | AT3G45410.1 | 34.184 | 196 | 110 | 10 | 5 | 188 | 4 | 192 | 1.27e-19 | 86.7 |
| Msa0299670 | AT3G45330.1 | 34.839 | 155 | 96 | 4 | 26 | 178 | 30 | 181 | 1.27e-18 | 84.0 |
| Msa0299670 | AT5G60270.1 | 35.429 | 175 | 99 | 6 | 10 | 178 | 6 | 172 | 1.56e-18 | 83.6 |
| Msa0299670 | AT3G08870.2 | 39.437 | 142 | 78 | 4 | 33 | 168 | 65 | 204 | 2.33e-18 | 83.2 |
| Msa0299670 | AT3G08870.1 | 39.437 | 142 | 78 | 4 | 33 | 168 | 44 | 183 | 2.42e-18 | 82.8 |
| Msa0299670 | AT3G45390.1 | 32.738 | 168 | 100 | 6 | 20 | 178 | 20 | 183 | 2.77e-18 | 82.8 |
| Msa0299670 | AT1G15530.1 | 36.943 | 157 | 89 | 5 | 22 | 171 | 28 | 181 | 8.60e-17 | 78.6 |
| Msa0299670 | AT5G01560.1 | 38.776 | 147 | 80 | 5 | 33 | 173 | 38 | 180 | 1.09e-16 | 78.2 |
| Msa0299670 | AT3G45420.1 | 32.597 | 181 | 108 | 8 | 7 | 181 | 7 | 179 | 2.40e-16 | 77.0 |
| Msa0299670 | AT5G01540.1 | 33.775 | 151 | 96 | 3 | 22 | 168 | 29 | 179 | 2.64e-15 | 74.3 |
| Msa0299670 | AT1G07460.2 | 36.257 | 171 | 97 | 5 | 7 | 174 | 12 | 173 | 3.19e-15 | 73.2 |
| Msa0299670 | AT5G03140.1 | 32.061 | 131 | 84 | 2 | 41 | 170 | 51 | 177 | 4.55e-15 | 73.6 |
| Msa0299670 | AT5G59270.2 | 32.778 | 180 | 112 | 6 | 1 | 178 | 8 | 180 | 5.15e-15 | 73.2 |
| Msa0299670 | AT5G59270.1 | 36.538 | 156 | 90 | 6 | 25 | 178 | 29 | 177 | 8.89e-15 | 72.8 |
| Msa0299670 | AT5G59270.3 | 34.615 | 156 | 93 | 6 | 25 | 178 | 32 | 180 | 9.25e-15 | 72.4 |
| Msa0299670 | AT1G07460.1 | 51.351 | 74 | 36 | 0 | 101 | 174 | 36 | 109 | 1.80e-14 | 70.5 |
| Msa0299670 | AT5G59260.1 | 31.313 | 198 | 121 | 9 | 7 | 198 | 12 | 200 | 3.60e-13 | 67.8 |
| Msa0299670 | AT3G53380.1 | 32.370 | 173 | 106 | 5 | 4 | 172 | 1 | 166 | 6.51e-13 | 67.0 |
| Msa0299670 | AT5G55830.1 | 30.337 | 178 | 107 | 6 | 5 | 171 | 6 | 177 | 9.24e-12 | 63.9 |
Find 35 sgRNAs with CRISPR-Local
Find 57 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACCTTCAAGTGGTCTAAA+TGG | 0.277261 | 2_3:+54822549 | Msa0299670:CDS |
| GGCCCATAGCCTGTCGAGGC+TGG | 0.285038 | 2_3:+54822743 | Msa0299670:CDS |
| TCGAGGCTGGGCGACGGCAC+CGG | 0.338144 | 2_3:+54822756 | Msa0299670:CDS |
| TCTCTTACATCCTTATCTTC+AGG | 0.347098 | 2_3:+54822717 | Msa0299670:CDS |
| CGCCCAGCCTCGACAGGCTA+TGG | 0.370575 | 2_3:-54822746 | None:intergenic |
| GGAAACACAGCAGATAATTA+TGG | 0.375097 | 2_3:-54822268 | None:intergenic |
| GGGAGAAGAGTGGAAGAGTT+TGG | 0.380117 | 2_3:-54822450 | None:intergenic |
| GTCATTAGTGAGAGTAAGAA+TGG | 0.385296 | 2_3:-54822367 | None:intergenic |
| CGAGGCTGGGCGACGGCACC+GGG | 0.394608 | 2_3:+54822757 | Msa0299670:CDS |
| AAAATGAAGGAAGTAGCAAA+TGG | 0.405656 | 2_3:-54822471 | None:intergenic |
| CTCTTACATCCTTATCTTCA+GGG | 0.446361 | 2_3:+54822718 | Msa0299670:CDS |
| TGCCGTCGCCCAGCCTCGAC+AGG | 0.459842 | 2_3:-54822752 | None:intergenic |
| ACAACATCAACTGAGTATAT+CGG | 0.459897 | 2_3:+54822573 | Msa0299670:CDS |
| TACATCCTTATCTTCAGGGC+CGG | 0.490899 | 2_3:+54822722 | Msa0299670:CDS |
| GCCCATAGCCTGTCGAGGCT+GGG | 0.493102 | 2_3:+54822744 | Msa0299670:CDS |
| AAATGAAGGAAGTAGCAAAT+GGG | 0.498637 | 2_3:-54822470 | None:intergenic |
| GTTCCATTTAGACCACTTGA+AGG | 0.502767 | 2_3:-54822552 | None:intergenic |
| TAATGGTTGCATTTCCATGT+AGG | 0.509118 | 2_3:-54822338 | None:intergenic |
| AGTAGCAAATGGGAGAAGAG+TGG | 0.510021 | 2_3:-54822460 | None:intergenic |
| AGAAGAGTGGAAGAGTTTGG+TGG | 0.510956 | 2_3:-54822447 | None:intergenic |
| ATGGGCCGGCCCTGAAGATA+AGG | 0.515536 | 2_3:-54822727 | None:intergenic |
| AGCCTCGACAGGCTATGGGC+CGG | 0.518702 | 2_3:-54822741 | None:intergenic |
| TTCATATTCACACCTTCAAG+TGG | 0.542279 | 2_3:+54822540 | Msa0299670:CDS |
| AGTAAGAATGGAGTTGCTAA+TGG | 0.545061 | 2_3:-54822355 | None:intergenic |
| CACGAGCTATTGAGAAGGAA+GGG | 0.552373 | 2_3:-54822395 | None:intergenic |
| GATACTAATGATAATCATGT+TGG | 0.552500 | 2_3:+54822681 | Msa0299670:CDS |
| GCCCAGCCTCGACAGGCTAT+GGG | 0.571043 | 2_3:-54822745 | None:intergenic |
| GCACGAGCTATTGAGAAGGA+AGG | 0.578111 | 2_3:-54822396 | None:intergenic |
| ATTATAGACAAATTCAGTAG+TGG | 0.581794 | 2_3:-54822289 | None:intergenic |
| ACGAGCTATTGAGAAGGAAG+GGG | 0.589492 | 2_3:-54822394 | None:intergenic |
| AGCCTGTCGAGGCTGGGCGA+CGG | 0.595903 | 2_3:+54822750 | Msa0299670:CDS |
| ACTTGAAGGTGTGAATATGA+AGG | 0.598797 | 2_3:-54822538 | None:intergenic |
| GGCCGGCCCATAGCCTGTCG+AGG | 0.603118 | 2_3:+54822739 | Msa0299670:CDS |
| GTGATAAGAAGCTTAAGTTG+AGG | 0.620742 | 2_3:-54822228 | None:intergenic |
| AAAAGCACGAGCTATTGAGA+AGG | 0.639292 | 2_3:-54822400 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACAAAAGAAAAATATTTT+TGG | - | chr2_3:54822800-54822819 | None:intergenic | 10.0% |
| !! | TTCAAAAATATTATCCTACA+TGG | + | chr2_3:54822324-54822343 | Msa0299670:CDS | 20.0% |
| !!! | GTTTTGTAGGTATTTTTTTA+GGG | - | chr2_3:54822428-54822447 | None:intergenic | 20.0% |
| ! | ATTATAGACAAATTCAGTAG+TGG | - | chr2_3:54822292-54822311 | None:intergenic | 25.0% |
| !!! | GGTTTTGTAGGTATTTTTTT+AGG | - | chr2_3:54822429-54822448 | None:intergenic | 25.0% |
| !! | TATGATAAAGTTTTTGATGG+GGG | - | chr2_3:54822505-54822524 | None:intergenic | 25.0% |
| !! | CTATGATAAAGTTTTTGATG+GGG | - | chr2_3:54822506-54822525 | None:intergenic | 25.0% |
| !! | CCTATGATAAAGTTTTTGAT+GGG | - | chr2_3:54822507-54822526 | None:intergenic | 25.0% |
| !! | TCCTATGATAAAGTTTTTGA+TGG | - | chr2_3:54822508-54822527 | None:intergenic | 25.0% |
| ! | AAAAACTTTATCATAGGACA+TGG | + | chr2_3:54822510-54822529 | Msa0299670:CDS | 25.0% |
| !! | CTTTTAAATCTCACAAATCA+AGG | + | chr2_3:54822597-54822616 | Msa0299670:CDS | 25.0% |
| ! | GATACTAATGATAATCATGT+TGG | + | chr2_3:54822681-54822700 | Msa0299670:CDS | 25.0% |
| AAATGAAGGAAGTAGCAAAT+GGG | - | chr2_3:54822473-54822492 | None:intergenic | 30.0% | |
| AAAATGAAGGAAGTAGCAAA+TGG | - | chr2_3:54822474-54822493 | None:intergenic | 30.0% | |
| CCCATCAAAAACTTTATCAT+AGG | + | chr2_3:54822504-54822523 | Msa0299670:CDS | 30.0% | |
| ACAACATCAACTGAGTATAT+CGG | + | chr2_3:54822573-54822592 | Msa0299670:CDS | 30.0% | |
| ! | AATCCTAACAACCATGTTTT+TGG | + | chr2_3:54822621-54822640 | Msa0299670:CDS | 30.0% |
| !!! | TATTTTTGGCCCCAAAAAAT+TGG | - | chr2_3:54822786-54822805 | None:intergenic | 30.0% |
| ! | GTGATAAGAAGCTTAAGTTG+AGG | - | chr2_3:54822231-54822250 | None:intergenic | 35.0% |
| GGAAACACAGCAGATAATTA+TGG | - | chr2_3:54822271-54822290 | None:intergenic | 35.0% | |
| TAATGGTTGCATTTCCATGT+AGG | - | chr2_3:54822341-54822360 | None:intergenic | 35.0% | |
| AGTAAGAATGGAGTTGCTAA+TGG | - | chr2_3:54822358-54822377 | None:intergenic | 35.0% | |
| GTCATTAGTGAGAGTAAGAA+TGG | - | chr2_3:54822370-54822389 | None:intergenic | 35.0% | |
| ! | ACTTGAAGGTGTGAATATGA+AGG | - | chr2_3:54822541-54822560 | None:intergenic | 35.0% |
| TTCATATTCACACCTTCAAG+TGG | + | chr2_3:54822540-54822559 | Msa0299670:CDS | 35.0% | |
| ACTCCAAAAACATGGTTGTT+AGG | - | chr2_3:54822627-54822646 | None:intergenic | 35.0% | |
| TCTCTTACATCCTTATCTTC+AGG | + | chr2_3:54822717-54822736 | Msa0299670:CDS | 35.0% | |
| CTCTTACATCCTTATCTTCA+GGG | + | chr2_3:54822718-54822737 | Msa0299670:CDS | 35.0% | |
| ! | AAAAGCACGAGCTATTGAGA+AGG | - | chr2_3:54822403-54822422 | None:intergenic | 40.0% |
| !!! | GAAGAGTTTGGTGGTTTTGT+AGG | - | chr2_3:54822441-54822460 | None:intergenic | 40.0% |
| ACACCTTCAAGTGGTCTAAA+TGG | + | chr2_3:54822549-54822568 | Msa0299670:CDS | 40.0% | |
| GTTCCATTTAGACCACTTGA+AGG | - | chr2_3:54822555-54822574 | None:intergenic | 40.0% | |
| CGAATTCGACTCCAAAAACA+TGG | - | chr2_3:54822635-54822654 | None:intergenic | 40.0% | |
| ! | TTTTGGCCCCAAAAAATTGG+AGG | - | chr2_3:54822783-54822802 | None:intergenic | 40.0% |
| ACGAGCTATTGAGAAGGAAG+GGG | - | chr2_3:54822397-54822416 | None:intergenic | 45.0% | |
| CACGAGCTATTGAGAAGGAA+GGG | - | chr2_3:54822398-54822417 | None:intergenic | 45.0% | |
| AGAAGAGTGGAAGAGTTTGG+TGG | - | chr2_3:54822450-54822469 | None:intergenic | 45.0% | |
| AGTAGCAAATGGGAGAAGAG+TGG | - | chr2_3:54822463-54822482 | None:intergenic | 45.0% | |
| GGGGGAGATAGAGAAAATGA+AGG | - | chr2_3:54822487-54822506 | None:intergenic | 45.0% | |
| TACATCCTTATCTTCAGGGC+CGG | + | chr2_3:54822722-54822741 | Msa0299670:CDS | 45.0% | |
| GCACGAGCTATTGAGAAGGA+AGG | - | chr2_3:54822399-54822418 | None:intergenic | 50.0% | |
| GGGAGAAGAGTGGAAGAGTT+TGG | - | chr2_3:54822453-54822472 | None:intergenic | 50.0% | |
| !!! | CACCGGGCCTCCAATTTTTT+GGG | + | chr2_3:54822773-54822792 | Msa0299670:CDS | 50.0% |
| !!! | ACCGGGCCTCCAATTTTTTG+GGG | + | chr2_3:54822774-54822793 | Msa0299670:CDS | 50.0% |
| !!! | GCACCGGGCCTCCAATTTTT+TGG | + | chr2_3:54822772-54822791 | Msa0299670:CDS | 55.0% |
| GCCCCAAAAAATTGGAGGCC+CGG | - | chr2_3:54822778-54822797 | None:intergenic | 55.0% | |
| ATGGGCCGGCCCTGAAGATA+AGG | - | chr2_3:54822730-54822749 | None:intergenic | 60.0% | |
| AGCCTCGACAGGCTATGGGC+CGG | - | chr2_3:54822744-54822763 | None:intergenic | 65.0% | |
| GCCCATAGCCTGTCGAGGCT+GGG | + | chr2_3:54822744-54822763 | Msa0299670:CDS | 65.0% | |
| GCCCAGCCTCGACAGGCTAT+GGG | - | chr2_3:54822748-54822767 | None:intergenic | 65.0% | |
| GGCCCATAGCCTGTCGAGGC+TGG | + | chr2_3:54822743-54822762 | Msa0299670:CDS | 70.0% | |
| CGCCCAGCCTCGACAGGCTA+TGG | - | chr2_3:54822749-54822768 | None:intergenic | 70.0% | |
| AGCCTGTCGAGGCTGGGCGA+CGG | + | chr2_3:54822750-54822769 | Msa0299670:CDS | 70.0% | |
| GGCCGGCCCATAGCCTGTCG+AGG | + | chr2_3:54822739-54822758 | Msa0299670:CDS | 75.0% | |
| TGCCGTCGCCCAGCCTCGAC+AGG | - | chr2_3:54822755-54822774 | None:intergenic | 75.0% | |
| TCGAGGCTGGGCGACGGCAC+CGG | + | chr2_3:54822756-54822775 | Msa0299670:CDS | 75.0% | |
| ! | CGAGGCTGGGCGACGGCACC+GGG | + | chr2_3:54822757-54822776 | Msa0299670:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 54822225 | 54822836 | 54822225 | ID=Msa0299670;Name=Msa0299670 |
| chr2_3 | mRNA | 54822225 | 54822836 | 54822225 | ID=Msa0299670-mRNA-1;Parent=Msa0299670;Name=Msa0299670-mRNA-1;_AED=0.54;_eAED=0.54;_QI=0|-1|0|1|-1|1|1|0|203 |
| chr2_3 | exon | 54822225 | 54822836 | 54822225 | ID=Msa0299670-mRNA-1:exon:17507;Parent=Msa0299670-mRNA-1 |
| chr2_3 | CDS | 54822225 | 54822836 | 54822225 | ID=Msa0299670-mRNA-1:cds;Parent=Msa0299670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
