Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0301310 | XP_003597231.1 | 96.814 | 565 | 17 | 1 | 1 | 565 | 1 | 564 | 0.0 | 1106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0301310 | sp|Q9FF55|PDI14_ARATH | 69.691 | 518 | 145 | 3 | 59 | 565 | 81 | 597 | 0.0 | 751 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0301310 | G7IRR6 | 96.814 | 565 | 17 | 1 | 1 | 565 | 1 | 564 | 0.0 | 1106 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0221950 | Msa0301310 | 0.864722 | 9.912118e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0301310 | MtrunA17_Chr2g0326581 | 96.814 | 565 | 17 | 1 | 1 | 565 | 1 | 564 | 0.0 | 1106 |
| Msa0301310 | MtrunA17_Chr4g0029181 | 72.359 | 568 | 134 | 5 | 16 | 565 | 21 | 583 | 0.0 | 789 |
| Msa0301310 | MtrunA17_Chr2g0331681 | 34.305 | 446 | 290 | 2 | 84 | 527 | 67 | 511 | 3.02e-95 | 300 |
| Msa0301310 | MtrunA17_Chr3g0124851 | 36.009 | 436 | 257 | 13 | 81 | 501 | 35 | 463 | 1.15e-73 | 243 |
| Msa0301310 | MtrunA17_Chr3g0124851 | 41.880 | 117 | 62 | 4 | 74 | 184 | 372 | 488 | 1.49e-16 | 82.8 |
| Msa0301310 | MtrunA17_Chr2g0326131 | 34.562 | 217 | 141 | 1 | 311 | 527 | 10 | 225 | 8.51e-44 | 155 |
| Msa0301310 | MtrunA17_Chr1g0200731 | 29.971 | 347 | 210 | 11 | 72 | 401 | 87 | 417 | 6.85e-25 | 108 |
| Msa0301310 | MtrunA17_Chr7g0271721 | 41.667 | 168 | 82 | 6 | 80 | 232 | 25 | 191 | 1.27e-23 | 102 |
| Msa0301310 | MtrunA17_Chr7g0271721 | 45.794 | 107 | 52 | 4 | 81 | 184 | 144 | 247 | 1.30e-17 | 84.7 |
| Msa0301310 | MtrunA17_Chr7g0271721 | 34.054 | 185 | 105 | 6 | 320 | 502 | 56 | 225 | 9.63e-17 | 82.0 |
| Msa0301310 | MtrunA17_Chr7g0271721 | 35.345 | 116 | 70 | 3 | 418 | 531 | 25 | 137 | 1.40e-14 | 75.5 |
| Msa0301310 | MtrunA17_Chr1g0194961 | 37.297 | 185 | 103 | 5 | 320 | 502 | 61 | 234 | 4.46e-23 | 101 |
| Msa0301310 | MtrunA17_Chr1g0194961 | 35.119 | 168 | 89 | 4 | 84 | 232 | 34 | 200 | 1.18e-20 | 94.0 |
| Msa0301310 | MtrunA17_Chr1g0194961 | 35.185 | 108 | 65 | 3 | 426 | 531 | 38 | 142 | 1.94e-13 | 72.0 |
| Msa0301310 | MtrunA17_Chr5g0438731 | 41.600 | 125 | 65 | 4 | 56 | 175 | 167 | 288 | 1.86e-18 | 88.2 |
| Msa0301310 | MtrunA17_Chr5g0438731 | 50.602 | 83 | 38 | 2 | 81 | 161 | 61 | 142 | 3.32e-16 | 81.3 |
| Msa0301310 | MtrunA17_Chr5g0438731 | 27.670 | 206 | 131 | 6 | 323 | 520 | 96 | 291 | 6.49e-13 | 71.2 |
| Msa0301310 | MtrunA17_Chr2g0287471 | 45.361 | 97 | 50 | 3 | 81 | 175 | 30 | 125 | 1.10e-13 | 72.8 |
| Msa0301310 | MtrunA17_Chr4g0041801 | 30.909 | 110 | 59 | 2 | 84 | 176 | 146 | 255 | 1.11e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0301310 | AT5G60640.1 | 69.691 | 518 | 145 | 3 | 59 | 565 | 81 | 597 | 0.0 | 751 |
| Msa0301310 | AT3G54960.1 | 61.775 | 552 | 189 | 7 | 29 | 565 | 35 | 579 | 0.0 | 687 |
| Msa0301310 | AT5G60640.2 | 70.732 | 451 | 130 | 1 | 59 | 507 | 81 | 531 | 0.0 | 679 |
| Msa0301310 | AT3G54960.2 | 61.311 | 473 | 167 | 4 | 29 | 486 | 35 | 506 | 0.0 | 602 |
| Msa0301310 | AT5G60640.3 | 56.538 | 520 | 146 | 8 | 59 | 565 | 81 | 533 | 0.0 | 558 |
| Msa0301310 | AT3G16110.1 | 34.633 | 436 | 281 | 3 | 78 | 510 | 74 | 508 | 4.80e-93 | 295 |
| Msa0301310 | AT1G52260.1 | 33.716 | 436 | 285 | 3 | 78 | 510 | 76 | 510 | 2.45e-91 | 291 |
| Msa0301310 | AT1G21750.2 | 38.758 | 467 | 252 | 18 | 81 | 526 | 32 | 485 | 2.49e-84 | 271 |
| Msa0301310 | AT1G21750.1 | 38.745 | 462 | 252 | 17 | 81 | 524 | 32 | 480 | 1.57e-83 | 269 |
| Msa0301310 | AT1G77510.1 | 36.566 | 495 | 273 | 19 | 81 | 553 | 31 | 506 | 2.43e-78 | 256 |
| Msa0301310 | AT1G77510.1 | 42.478 | 113 | 63 | 2 | 73 | 183 | 367 | 479 | 9.50e-17 | 83.6 |
| Msa0301310 | AT2G47470.2 | 31.169 | 231 | 117 | 8 | 84 | 284 | 28 | 246 | 1.98e-21 | 94.7 |
| Msa0301310 | AT2G47470.2 | 34.054 | 185 | 109 | 5 | 320 | 502 | 55 | 228 | 5.55e-21 | 93.6 |
| Msa0301310 | AT2G47470.2 | 33.333 | 111 | 67 | 3 | 432 | 540 | 37 | 142 | 3.95e-13 | 70.5 |
| Msa0301310 | AT2G47470.3 | 31.169 | 231 | 117 | 8 | 84 | 284 | 28 | 246 | 7.39e-21 | 94.4 |
| Msa0301310 | AT2G47470.3 | 34.054 | 185 | 109 | 5 | 320 | 502 | 55 | 228 | 8.35e-21 | 94.0 |
| Msa0301310 | AT2G47470.3 | 34.579 | 107 | 63 | 3 | 436 | 540 | 41 | 142 | 5.28e-13 | 70.9 |
| Msa0301310 | AT2G47470.4 | 31.169 | 231 | 117 | 8 | 84 | 284 | 28 | 246 | 8.28e-21 | 94.4 |
| Msa0301310 | AT2G47470.4 | 34.239 | 184 | 108 | 5 | 321 | 502 | 56 | 228 | 1.08e-20 | 94.0 |
| Msa0301310 | AT2G47470.4 | 34.579 | 107 | 63 | 3 | 436 | 540 | 41 | 142 | 4.19e-13 | 71.2 |
| Msa0301310 | AT2G47470.1 | 31.169 | 231 | 117 | 8 | 84 | 284 | 28 | 246 | 1.14e-20 | 94.4 |
| Msa0301310 | AT2G47470.1 | 34.239 | 184 | 108 | 5 | 321 | 502 | 56 | 228 | 1.21e-20 | 94.4 |
| Msa0301310 | AT2G47470.1 | 34.579 | 107 | 63 | 3 | 436 | 540 | 41 | 142 | 4.62e-13 | 71.2 |
| Msa0301310 | AT1G35620.1 | 28.829 | 222 | 136 | 7 | 81 | 291 | 34 | 244 | 5.37e-19 | 90.1 |
| Msa0301310 | AT1G04980.1 | 29.018 | 224 | 133 | 9 | 82 | 283 | 170 | 389 | 2.72e-17 | 85.1 |
| Msa0301310 | AT1G04980.1 | 44.330 | 97 | 51 | 3 | 81 | 175 | 34 | 129 | 1.12e-16 | 83.2 |
| Msa0301310 | AT1G04980.1 | 27.488 | 211 | 134 | 5 | 321 | 520 | 66 | 268 | 8.22e-15 | 77.4 |
| Msa0301310 | AT2G32920.1 | 42.308 | 104 | 57 | 3 | 81 | 182 | 32 | 134 | 1.44e-16 | 82.8 |
| Msa0301310 | AT2G32920.1 | 45.455 | 99 | 46 | 4 | 82 | 175 | 165 | 260 | 2.36e-16 | 82.0 |
| Msa0301310 | AT2G32920.1 | 27.670 | 206 | 133 | 5 | 323 | 520 | 66 | 263 | 1.46e-13 | 73.6 |
| Msa0301310 | AT4G27080.1 | 32.283 | 127 | 68 | 3 | 79 | 188 | 141 | 266 | 6.71e-13 | 71.6 |
| Msa0301310 | AT4G27080.2 | 32.283 | 127 | 68 | 3 | 79 | 188 | 193 | 318 | 7.62e-13 | 71.6 |
Find 136 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCATGAGTATTTAGAATTT+TGG | 0.029623 | 2_3:-57221495 | Msa0301310:three_prime_UTR |
| ATCAAATAGCTTACACTTTC+AGG | 0.073604 | 2_3:+57222566 | None:intergenic |
| TAGGAGTTGAGGCTGGTTTC+TGG | 0.153170 | 2_3:+57221756 | None:intergenic |
| CGCAGCTGCAACTGAATTAA+AGG | 0.177122 | 2_3:-57225131 | Msa0301310:CDS |
| AACTAAATACCCGAAATAAA+TGG | 0.200568 | 2_3:+57221447 | None:intergenic |
| GAAATTGCTCCCAGTATTTC+AGG | 0.203282 | 2_3:-57223476 | Msa0301310:CDS |
| GAAGAAAAGCTCAACCATTT+TGG | 0.206003 | 2_3:-57223856 | Msa0301310:intron |
| ACATCAGAGCTCTCTGATTT+AGG | 0.211013 | 2_3:+57221737 | None:intergenic |
| TTCTGAAACCAAAGTTGTTT+TGG | 0.215731 | 2_3:-57224782 | Msa0301310:CDS |
| TGCTCAGAAATTTGATGTTC+AGG | 0.255407 | 2_3:-57225059 | Msa0301310:CDS |
| TAGCTTACACTTTCAGGAAT+TGG | 0.267348 | 2_3:+57222572 | None:intergenic |
| ATAATTACCTGTTTCTTGAT+TGG | 0.283200 | 2_3:+57223639 | None:intergenic |
| TTGAAAAGCTTTGCAACTTC+AGG | 0.285270 | 2_3:+57223928 | None:intergenic |
| TTTGATGCTTCCTGAAATAC+TGG | 0.295344 | 2_3:+57223466 | None:intergenic |
| GTTGCTACTTTGGTTCTCTT+TGG | 0.295651 | 2_3:+57221697 | None:intergenic |
| GTTGCAGCTGCGGCGTATTC+CGG | 0.298982 | 2_3:+57225142 | None:intergenic |
| TATTCATAACATTACTTCAT+TGG | 0.325125 | 2_3:-57224827 | Msa0301310:CDS |
| GTGGTGGTTTCACCAGCTTC+TGG | 0.328568 | 2_3:+57225376 | None:intergenic |
| AGAAATTAAACAAACCAAAA+TGG | 0.339530 | 2_3:+57223842 | None:intergenic |
| CTGCTTGAGGAACTTGTAAA+AGG | 0.346354 | 2_3:+57221802 | None:intergenic |
| AGCTTACACTTTCAGGAATT+GGG | 0.357347 | 2_3:+57222573 | None:intergenic |
| GCTGGTTTCTGGAGCTTGAA+TGG | 0.364344 | 2_3:+57221767 | None:intergenic |
| ACTAAATACCCGAAATAAAT+GGG | 0.365943 | 2_3:+57221448 | None:intergenic |
| GGTGACTATTGACAGAATTA+AGG | 0.380026 | 2_3:-57222786 | Msa0301310:intron |
| CTGGTTTCTGGAGCTTGAAT+GGG | 0.380359 | 2_3:+57221768 | None:intergenic |
| CTCCTCCAACAAGATTCCTT+TGG | 0.388801 | 2_3:-57223706 | Msa0301310:CDS |
| AAGGATCAACGCAGGGCGTT+TGG | 0.389545 | 2_3:+57223891 | None:intergenic |
| CTCATTGTGAATGAAATTTG+CGG | 0.402021 | 2_3:+57225505 | None:intergenic |
| TGAAAATCCAATCAAGAAAC+AGG | 0.402093 | 2_3:-57223646 | Msa0301310:intron |
| TGACATCGCTGTTGCTACTT+TGG | 0.410750 | 2_3:+57221687 | None:intergenic |
| TTTGCAAGCTTGTTGTATAT+CGG | 0.417814 | 2_3:+57222261 | None:intergenic |
| AGTTTCTGAATCTTCGTAAC+CGG | 0.422776 | 2_3:+57225300 | None:intergenic |
| GAGAAAACCCAAAACAACTT+TGG | 0.424825 | 2_3:+57224774 | None:intergenic |
| ATTTGGGTTTACCTTTGCCC+TGG | 0.431662 | 2_3:+57222176 | None:intergenic |
| ATACCGAAGTAATCTGAAAC+AGG | 0.440539 | 2_3:+57223005 | None:intergenic |
| GTGTGGCCATTGCCAACATT+TGG | 0.443950 | 2_3:-57222286 | Msa0301310:CDS |
| TCAATGAAGAAAAGGATAGT+AGG | 0.443954 | 2_3:+57225031 | None:intergenic |
| TCAGATTACTTCGGTATTAG+TGG | 0.447352 | 2_3:-57222999 | Msa0301310:CDS |
| TGTTACCAAAGGAATCTTGT+TGG | 0.449876 | 2_3:+57223701 | None:intergenic |
| CTTGGGGAGAGAAGAATTAG+TGG | 0.450627 | 2_3:+57221578 | None:intergenic |
| CAACTTCAGGATCCACAGTC+TGG | 0.454592 | 2_3:+57223941 | None:intergenic |
| GGAAGAAAATTTGTGTTTGA+AGG | 0.454888 | 2_3:-57222812 | Msa0301310:CDS |
| GCAGCTAGCTCCTCACTCTC+AGG | 0.456501 | 2_3:+57223997 | None:intergenic |
| CGGAATCATCGCCGTGGTGG+TGG | 0.460227 | 2_3:+57225347 | None:intergenic |
| GAACACCATCAATGAAGAAA+AGG | 0.463797 | 2_3:+57225023 | None:intergenic |
| TGAAGGAGGAGAAGAAGAGA+AGG | 0.463950 | 2_3:+57225455 | None:intergenic |
| GCTCAGAAATTTGATGTTCA+GGG | 0.464833 | 2_3:-57225058 | Msa0301310:CDS |
| AGAGAAGGGTAGTGAGGGAA+AGG | 0.466754 | 2_3:+57225470 | None:intergenic |
| GGAAGCATCAAAGTCTTTCA+AGG | 0.466842 | 2_3:-57223455 | Msa0301310:CDS |
| GTGGTGGTGGTGTGTGGTGG+TGG | 0.471773 | 2_3:+57225360 | None:intergenic |
| AGAAGAAGAGAAGGGTAGTG+AGG | 0.473537 | 2_3:+57225464 | None:intergenic |
| TGTATATCGGTTCCAAATGT+TGG | 0.475373 | 2_3:+57222274 | None:intergenic |
| ATGTTCACTTTGCAGTCTGA+TGG | 0.480322 | 2_3:-57222050 | Msa0301310:intron |
| AAAATTTGTGTTTGAAGGAG+AGG | 0.487863 | 2_3:-57222807 | Msa0301310:CDS |
| ACTCTTCTCTTCTTCCCAGC+AGG | 0.489317 | 2_3:-57222020 | Msa0301310:CDS |
| CTTTAATTCAGTTGCAGCTG+CGG | 0.489945 | 2_3:+57225132 | None:intergenic |
| TTTGGGTTTACCTTTGCCCT+GGG | 0.490545 | 2_3:+57222177 | None:intergenic |
| GCAGCTGCAACTGAATTAAA+GGG | 0.502661 | 2_3:-57225130 | Msa0301310:CDS |
| CTCTCTTGTAATAGCCAAGA+TGG | 0.503883 | 2_3:-57222220 | Msa0301310:CDS |
| CAAGCCTATAAAAGAGGTAA+AGG | 0.505464 | 2_3:-57221559 | Msa0301310:three_prime_UTR |
| GAAGAAGAGAAGGGTAGTGA+GGG | 0.508802 | 2_3:+57225465 | None:intergenic |
| GTGTGACTGTGATGTGAGAA+TGG | 0.509620 | 2_3:+57225577 | None:intergenic |
| TCTGATTTAGGAGTTGAGGC+TGG | 0.514207 | 2_3:+57221749 | None:intergenic |
| CAGATTACTTCGGTATTAGT+GGG | 0.514292 | 2_3:-57222998 | Msa0301310:CDS |
| GAACACAAAATGAGCATCCC+AGG | 0.515907 | 2_3:-57222194 | Msa0301310:CDS |
| ATCAAAGTCTTTCAAGGGAA+AGG | 0.517288 | 2_3:-57223449 | Msa0301310:intron |
| GGTGATGTGAAAATAGTTGT+TGG | 0.517934 | 2_3:-57222467 | Msa0301310:CDS |
| ACCACCACACACCACCACCA+CGG | 0.523167 | 2_3:-57225358 | Msa0301310:CDS |
| GTCTTCTTCGAGATCGGCGT+CGG | 0.526121 | 2_3:+57225327 | None:intergenic |
| AGAATTCGACTAAAACGAAT+CGG | 0.526308 | 2_3:+57225200 | None:intergenic |
| TCTCCCCAAGCCTATAAAAG+AGG | 0.526504 | 2_3:-57221565 | Msa0301310:three_prime_UTR |
| TTTCTTCTTCTTTCTTGACA+AGG | 0.528407 | 2_3:+57223872 | None:intergenic |
| TTAACTCGGCGACAGAATGA+TGG | 0.534871 | 2_3:-57222488 | Msa0301310:intron |
| ACATGGATTAAGAAGAAGAC+TGG | 0.536124 | 2_3:-57224856 | Msa0301310:CDS |
| TAAAAGAGGTAAAGGAGGGG+GGG | 0.537490 | 2_3:-57221551 | Msa0301310:three_prime_UTR |
| AATATCAGATATATGCTCCT+TGG | 0.540524 | 2_3:-57222308 | Msa0301310:intron |
| ATCAGAGAGCTCTGATGTCA+AGG | 0.545354 | 2_3:-57221732 | Msa0301310:CDS |
| GCATACACCGGAAACGATGA+TGG | 0.546485 | 2_3:-57222833 | Msa0301310:CDS |
| GCAGTTGATCTTTGTGCTTG+TGG | 0.546998 | 2_3:-57223054 | Msa0301310:intron |
| TACCAAAGGAATCTTGTTGG+AGG | 0.552032 | 2_3:+57223704 | None:intergenic |
| GAAACTGATAACGAAGATGT+TGG | 0.553749 | 2_3:-57223032 | Msa0301310:CDS |
| GAAGGAGGAGAAGAAGAGAA+GGG | 0.554511 | 2_3:+57225456 | None:intergenic |
| AGCAACTTCATTATCTTCAG+TGG | 0.558524 | 2_3:+57225078 | None:intergenic |
| GCTGGGAAGAAGAGAAGAGT+GGG | 0.561355 | 2_3:+57222023 | None:intergenic |
| AATTGTCTTGGATGAGTCAA+AGG | 0.563831 | 2_3:-57222429 | Msa0301310:CDS |
| GCCGTGGTGGTGGTGTGTGG+TGG | 0.565946 | 2_3:+57225357 | None:intergenic |
| TTCCTCGACGAACCAGAAGC+TGG | 0.565959 | 2_3:-57225388 | Msa0301310:CDS |
| GGAGAAGTCTTCTTCGAGAT+CGG | 0.567305 | 2_3:+57225321 | None:intergenic |
| GCTCTCTGATTTAGGAGTTG+AGG | 0.567708 | 2_3:+57221745 | None:intergenic |
| TGTGACTGTGATGTGAGAAT+GGG | 0.567828 | 2_3:+57225578 | None:intergenic |
| AGCTGCGGCTTCACGTCTTG+AGG | 0.570216 | 2_3:-57223980 | Msa0301310:CDS |
| AAGCCTGTTTCAGATTACTT+CGG | 0.573742 | 2_3:-57223008 | Msa0301310:CDS |
| GCCTATAAAAGAGGTAAAGG+AGG | 0.577629 | 2_3:-57221556 | Msa0301310:three_prime_UTR |
| AGCATAGATTATTATTTGCG+AGG | 0.578132 | 2_3:+57221417 | None:intergenic |
| CAGATATATGCTCCTTGGTG+TGG | 0.578248 | 2_3:-57222303 | Msa0301310:CDS |
| TATAAAAGAGGTAAAGGAGG+GGG | 0.582787 | 2_3:-57221553 | Msa0301310:three_prime_UTR |
| GCATAGAATGTGAGTGAAGG+AGG | 0.588732 | 2_3:+57225441 | None:intergenic |
| GATCTCGAAGAAGACTTCTC+CGG | 0.588882 | 2_3:-57225319 | Msa0301310:CDS |
| AAGTAGCAACAGCGATGTCA+AGG | 0.589607 | 2_3:-57221684 | Msa0301310:CDS |
| TCGGTTCCAAATGTTGGCAA+TGG | 0.589689 | 2_3:+57222280 | None:intergenic |
| ATCGCCGTGGTGGTGGTGTG+TGG | 0.590102 | 2_3:+57225354 | None:intergenic |
| CACCAGCTTCTGGTTCGTCG+AGG | 0.592591 | 2_3:+57225386 | None:intergenic |
| GGATTGATGCATGCTGCTTG+AGG | 0.593443 | 2_3:+57221789 | None:intergenic |
| CGAAAGGAAGAGAGAAACAG+AGG | 0.600295 | 2_3:+57225533 | None:intergenic |
| GGTGTTCATAAGAGTTACAC+TGG | 0.600709 | 2_3:-57225007 | Msa0301310:CDS |
| AAATGAGCATCCCAGGGCAA+AGG | 0.601467 | 2_3:-57222187 | Msa0301310:intron |
| ATAAAAGAGGTAAAGGAGGG+GGG | 0.603157 | 2_3:-57221552 | Msa0301310:three_prime_UTR |
| GAAGTAATGTTATGAATACC+AGG | 0.603974 | 2_3:+57224832 | None:intergenic |
| GTCAAAGGACGTTCTCCTTG+AGG | 0.604589 | 2_3:-57222414 | Msa0301310:intron |
| TATGTAGGGTCCTGAGAGTG+AGG | 0.607409 | 2_3:-57224007 | Msa0301310:intron |
| GAAATTTGCGGAGAAACGAA+AGG | 0.609190 | 2_3:+57225517 | None:intergenic |
| ATTAAGAAGAAGACTGGACC+TGG | 0.609346 | 2_3:-57224850 | Msa0301310:CDS |
| TTCTTGACAAGGATCAACGC+AGG | 0.612368 | 2_3:+57223883 | None:intergenic |
| GAAGCATCAAAGTCTTTCAA+GGG | 0.619244 | 2_3:-57223454 | Msa0301310:CDS |
| ATAGATTATTATTTGCGAGG+AGG | 0.621902 | 2_3:+57221420 | None:intergenic |
| TGCTGGGAAGAAGAGAAGAG+TGG | 0.622841 | 2_3:+57222022 | None:intergenic |
| CGTCGGAATCATCGCCGTGG+TGG | 0.624569 | 2_3:+57225344 | None:intergenic |
| CCTATAAAAGAGGTAAAGGA+GGG | 0.626308 | 2_3:-57221555 | Msa0301310:three_prime_UTR |
| GAATTCTACGCACCATGGTG+TGG | 0.628556 | 2_3:-57225184 | Msa0301310:CDS |
| CAAGAGAGTCAATACTGCGA+AGG | 0.629198 | 2_3:+57222235 | None:intergenic |
| TTCGCATAGAATGTGAGTGA+AGG | 0.632991 | 2_3:+57225438 | None:intergenic |
| TCTTGACAAGGATCAACGCA+GGG | 0.634558 | 2_3:+57223884 | None:intergenic |
| CTTGTAATAGCCAAGATGGA+CGG | 0.635238 | 2_3:-57222216 | Msa0301310:CDS |
| TAGTCGAATTCTACGCACCA+TGG | 0.639660 | 2_3:-57225189 | Msa0301310:CDS |
| TTGATGCTTCCTGAAATACT+GGG | 0.651591 | 2_3:+57223467 | None:intergenic |
| TCATTGTCAAGCATTAGCAC+CGG | 0.654221 | 2_3:-57225161 | Msa0301310:CDS |
| CTAAATACCCGAAATAAATG+GGG | 0.657950 | 2_3:+57221449 | None:intergenic |
| AACACAAAATGAGCATCCCA+GGG | 0.664470 | 2_3:-57222193 | Msa0301310:CDS |
| TGTTGGCAATGGCCACACCA+AGG | 0.684405 | 2_3:+57222291 | None:intergenic |
| CGGCGTCGGAATCATCGCCG+TGG | 0.685072 | 2_3:+57225341 | None:intergenic |
| GCAGAGAAGCTATTGTGACA+TGG | 0.687793 | 2_3:-57224873 | Msa0301310:intron |
| CTATAAAAGAGGTAAAGGAG+GGG | 0.692329 | 2_3:-57221554 | Msa0301310:three_prime_UTR |
| TGAGAGTGAGGAGCTAGCTG+CGG | 0.699295 | 2_3:-57223995 | Msa0301310:CDS |
| ATGCAGGTACTTGCATACAC+CGG | 0.700002 | 2_3:-57222845 | Msa0301310:intron |
| CTGGGAAGAAGAGAAGAGTG+GGG | 0.702683 | 2_3:+57222024 | None:intergenic |
| GCTTGACAATGACCACACCA+TGG | 0.740842 | 2_3:+57225172 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTTCAATAATTGAAA+GGG | + | chr2_3:57222011-57222030 | None:intergenic | 10.0% |
| !! | AATGAGATTATATTATAATA+AGG | + | chr2_3:57223354-57223373 | None:intergenic | 10.0% |
| !! | TTATTATAATATAATCTCAT+TGG | - | chr2_3:57223353-57223372 | Msa0301310:intron | 10.0% |
| !! | GTAAAATTTCAATAATTGAA+AGG | + | chr2_3:57222012-57222031 | None:intergenic | 15.0% |
| !!! | GAAATTTTACTCAATTTTAT+TGG | - | chr2_3:57222022-57222041 | Msa0301310:CDS | 15.0% |
| !!! | AGTTAAATGTTGATTTTAAA+TGG | - | chr2_3:57222249-57222268 | Msa0301310:CDS | 15.0% |
| !!! | GAAAAAGAAATAATTACTTT+TGG | + | chr2_3:57223989-57224008 | None:intergenic | 15.0% |
| !! | ATCTTGTATTGTTAATTTAA+TGG | - | chr2_3:57224617-57224636 | Msa0301310:intron | 15.0% |
| !! | TATTCATAACATTACTTCAT+TGG | - | chr2_3:57222128-57222147 | Msa0301310:intron | 20.0% |
| !!! | AAAACAAATTTGCTAATTGA+TGG | + | chr2_3:57222826-57222845 | None:intergenic | 20.0% |
| !! | AGAAATTAAACAAACCAAAA+TGG | + | chr2_3:57223116-57223135 | None:intergenic | 20.0% |
| !!! | ATGTTTGAAACTTTTTTTTC+AGG | - | chr2_3:57223425-57223444 | Msa0301310:intron | 20.0% |
| !!! | ATTACATCTTTTGAATAACT+TGG | - | chr2_3:57224056-57224075 | Msa0301310:intron | 20.0% |
| !! | AGTTAACAAAACATAATTGA+TGG | + | chr2_3:57224422-57224441 | None:intergenic | 20.0% |
| !!! | TCAATTATGTTTTGTTAACT+TGG | - | chr2_3:57224422-57224441 | Msa0301310:intron | 20.0% |
| !! | AATATAACTGGTAAAATAGA+GGG | + | chr2_3:57224578-57224597 | None:intergenic | 20.0% |
| !! | AAATATAACTGGTAAAATAG+AGG | + | chr2_3:57224579-57224598 | None:intergenic | 20.0% |
| !! | TGTATTGTTAATTTAATGGT+TGG | - | chr2_3:57224621-57224640 | Msa0301310:intron | 20.0% |
| !! | AAGATTGATCAATAAGTTAT+TGG | + | chr2_3:57224879-57224898 | None:intergenic | 20.0% |
| !!! | TCATGAGTATTTAGAATTTT+GGG | - | chr2_3:57225461-57225480 | Msa0301310:CDS | 20.0% |
| !! | AAAAAAATCCCCATTTATTT+CGG | - | chr2_3:57225498-57225517 | Msa0301310:exon | 20.0% |
| !!! | GGTTATATGTTGATTTTAAG+TGG | - | chr2_3:57222522-57222541 | Msa0301310:intron | 25.0% |
| ! | AAGGAAGAAAGTTTAATCTT+TGG | - | chr2_3:57222649-57222668 | Msa0301310:intron | 25.0% |
| ! | ATTAGCAAATCATAACGAAT+AGG | + | chr2_3:57222763-57222782 | None:intergenic | 25.0% |
| !! | ATTGGATTTTCAAAGATTGT+TGG | + | chr2_3:57223301-57223320 | None:intergenic | 25.0% |
| !! | ATAATTACCTGTTTCTTGAT+TGG | + | chr2_3:57223319-57223338 | None:intergenic | 25.0% |
| !!! | ACTTTCATCTTGTCATTTTT+TGG | - | chr2_3:57223557-57223576 | Msa0301310:intron | 25.0% |
| !!! | CTTTCATCTTGTCATTTTTT+GGG | - | chr2_3:57223558-57223577 | Msa0301310:intron | 25.0% |
| !! | TGATTTTATAAACTGAAGCA+TGG | + | chr2_3:57223700-57223719 | None:intergenic | 25.0% |
| ! | GTATCATCAAATTGAACAAA+GGG | + | chr2_3:57224011-57224030 | None:intergenic | 25.0% |
| ! | CCTCATTAAATGAAAGAAAA+AGG | + | chr2_3:57224261-57224280 | None:intergenic | 25.0% |
| !! | CCTTTTTCTTTCATTTAATG+AGG | - | chr2_3:57224258-57224277 | Msa0301310:intron | 25.0% |
| !! | TCAAATCTTCATTTTATCTC+AGG | - | chr2_3:57224307-57224326 | Msa0301310:intron | 25.0% |
| ! | AAAGTGTAAGCTATTTGATT+TGG | - | chr2_3:57224393-57224412 | Msa0301310:intron | 25.0% |
| !!! | CAATTTTGATGAAATTGTCT+TGG | - | chr2_3:57224514-57224533 | Msa0301310:intron | 25.0% |
| ! | ATTAGAGATGCAAATATAAC+TGG | + | chr2_3:57224590-57224609 | None:intergenic | 25.0% |
| ! | ATTGTTAATTTAATGGTTGG+TGG | - | chr2_3:57224624-57224643 | Msa0301310:intron | 25.0% |
| ! | ATTGCTTAATATTCACTTAC+AGG | + | chr2_3:57224977-57224996 | None:intergenic | 25.0% |
| !! | TTTTCTATAAGTCACTATGT+CGG | + | chr2_3:57225354-57225373 | None:intergenic | 25.0% |
| !!! | CTCATGAGTATTTAGAATTT+TGG | - | chr2_3:57225460-57225479 | Msa0301310:CDS | 25.0% |
| !!! | CATGAGTATTTAGAATTTTG+GGG | - | chr2_3:57225462-57225481 | Msa0301310:CDS | 25.0% |
| ! | AAAAAATCCCCATTTATTTC+GGG | - | chr2_3:57225499-57225518 | Msa0301310:exon | 25.0% |
| ! | ACTAAATACCCGAAATAAAT+GGG | + | chr2_3:57225510-57225529 | None:intergenic | 25.0% |
| ! | AACTAAATACCCGAAATAAA+TGG | + | chr2_3:57225511-57225530 | None:intergenic | 25.0% |
| CTCATTGTGAATGAAATTTG+CGG | + | chr2_3:57221453-57221472 | None:intergenic | 30.0% | |
| AGAATTCGACTAAAACGAAT+CGG | + | chr2_3:57221758-57221777 | None:intergenic | 30.0% | |
| TCAATGAAGAAAAGGATAGT+AGG | + | chr2_3:57221927-57221946 | None:intergenic | 30.0% | |
| ! | ACTATCCTTTTCTTCATTGA+TGG | - | chr2_3:57221927-57221946 | Msa0301310:intron | 30.0% |
| GAAGTAATGTTATGAATACC+AGG | + | chr2_3:57222126-57222145 | None:intergenic | 30.0% | |
| !!! | TTCTGAAACCAAAGTTGTTT+TGG | - | chr2_3:57222173-57222192 | Msa0301310:intron | 30.0% |
| !! | TCTGAAACCAAAGTTGTTTT+GGG | - | chr2_3:57222174-57222193 | Msa0301310:intron | 30.0% |
| AAGTTATATGCTATGAAGCA+CGG | - | chr2_3:57222351-57222370 | Msa0301310:intron | 30.0% | |
| GAATGTAGTTAAATGTGTCT+CGG | - | chr2_3:57222426-57222445 | Msa0301310:CDS | 30.0% | |
| !! | GATGGATTATCTATGGTATT+TGG | + | chr2_3:57222590-57222609 | None:intergenic | 30.0% |
| !! | ATTCGTAGATGGATTATCTA+TGG | + | chr2_3:57222597-57222616 | None:intergenic | 30.0% |
| GAAAGTTTAATCTTTGGACT+TGG | - | chr2_3:57222655-57222674 | Msa0301310:intron | 30.0% | |
| TTTCTTCTTCTTTCTTGACA+AGG | + | chr2_3:57223086-57223105 | None:intergenic | 30.0% | |
| ! | TATCGAATTTTCCATCTGTA+GGG | + | chr2_3:57223207-57223226 | None:intergenic | 30.0% |
| ! | TTATCGAATTTTCCATCTGT+AGG | + | chr2_3:57223208-57223227 | None:intergenic | 30.0% |
| CTTGTAAAAACTGTTACCAA+AGG | + | chr2_3:57223268-57223287 | None:intergenic | 30.0% | |
| TGAAAATCCAATCAAGAAAC+AGG | - | chr2_3:57223309-57223328 | Msa0301310:intron | 30.0% | |
| CGTATCATCAAATTGAACAA+AGG | + | chr2_3:57224012-57224031 | None:intergenic | 30.0% | |
| GGAAGAAAATTTGTGTTTGA+AGG | - | chr2_3:57224143-57224162 | Msa0301310:intron | 30.0% | |
| AAAATTTGTGTTTGAAGGAG+AGG | - | chr2_3:57224148-57224167 | Msa0301310:intron | 30.0% | |
| ATCATACACATTCTGTAACA+TGG | + | chr2_3:57224236-57224255 | None:intergenic | 30.0% | |
| ! | TTCATTTTATCTCAGGCATT+TGG | - | chr2_3:57224314-57224333 | Msa0301310:intron | 30.0% |
| ! | TCATTTTATCTCAGGCATTT+GGG | - | chr2_3:57224315-57224334 | Msa0301310:intron | 30.0% |
| ATCAAATAGCTTACACTTTC+AGG | + | chr2_3:57224392-57224411 | None:intergenic | 30.0% | |
| ! | GTCTAACATGTTTGTTAACT+CGG | - | chr2_3:57224453-57224472 | Msa0301310:intron | 30.0% |
| AATATCAGATATATGCTCCT+TGG | - | chr2_3:57224647-57224666 | Msa0301310:intron | 30.0% | |
| !! | TTTGCAAGCTTGTTGTATAT+CGG | + | chr2_3:57224697-57224716 | None:intergenic | 30.0% |
| ! | GCAATGTCTAGTTTGAATTT+GGG | + | chr2_3:57224798-57224817 | None:intergenic | 30.0% |
| ! | AGCAATGTCTAGTTTGAATT+TGG | + | chr2_3:57224799-57224818 | None:intergenic | 30.0% |
| ATCAATAAGTTATTGGATGC+AGG | + | chr2_3:57224872-57224891 | None:intergenic | 30.0% | |
| ! | TTTACCTCTTTTATAGGCTT+GGG | + | chr2_3:57225397-57225416 | None:intergenic | 30.0% |
| CTAAATACCCGAAATAAATG+GGG | + | chr2_3:57225509-57225528 | None:intergenic | 30.0% | |
| ATAGATTATTATTTGCGAGG+AGG | + | chr2_3:57225538-57225557 | None:intergenic | 30.0% | |
| AGCATAGATTATTATTTGCG+AGG | + | chr2_3:57225541-57225560 | None:intergenic | 30.0% | |
| AGTTTCTGAATCTTCGTAAC+CGG | + | chr2_3:57221658-57221677 | None:intergenic | 35.0% | |
| AGCAACTTCATTATCTTCAG+TGG | + | chr2_3:57221880-57221899 | None:intergenic | 35.0% | |
| TGCTCAGAAATTTGATGTTC+AGG | - | chr2_3:57221896-57221915 | Msa0301310:intron | 35.0% | |
| GCTCAGAAATTTGATGTTCA+GGG | - | chr2_3:57221897-57221916 | Msa0301310:intron | 35.0% | |
| GAACACCATCAATGAAGAAA+AGG | + | chr2_3:57221935-57221954 | None:intergenic | 35.0% | |
| ! | ACATGGATTAAGAAGAAGAC+TGG | - | chr2_3:57222099-57222118 | Msa0301310:intron | 35.0% |
| GAGAAAACCCAAAACAACTT+TGG | + | chr2_3:57222184-57222203 | None:intergenic | 35.0% | |
| GTATTCTTGGAATTCGTAGA+TGG | + | chr2_3:57222608-57222627 | None:intergenic | 35.0% | |
| ! | ACGTGTCATGGTGTTAATTA+AGG | - | chr2_3:57222630-57222649 | Msa0301310:intron | 35.0% |
| AGTTTAATCTTTGGACTTGG+CGG | - | chr2_3:57222658-57222677 | Msa0301310:intron | 35.0% | |
| CGCATACAAATTTAAACCGT+CGG | - | chr2_3:57222697-57222716 | Msa0301310:intron | 35.0% | |
| TCCTGTTATGCACAATATGT+AGG | - | chr2_3:57222933-57222952 | Msa0301310:intron | 35.0% | |
| CCTGTTATGCACAATATGTA+GGG | - | chr2_3:57222934-57222953 | Msa0301310:intron | 35.0% | |
| TTGAAAAGCTTTGCAACTTC+AGG | + | chr2_3:57223030-57223049 | None:intergenic | 35.0% | |
| ! | GAAGAAAAGCTCAACCATTT+TGG | - | chr2_3:57223099-57223118 | Msa0301310:intron | 35.0% |
| TGTTACCAAAGGAATCTTGT+TGG | + | chr2_3:57223257-57223276 | None:intergenic | 35.0% | |
| TTGATGCTTCCTGAAATACT+GGG | + | chr2_3:57223491-57223510 | None:intergenic | 35.0% | |
| TTTGATGCTTCCTGAAATAC+TGG | + | chr2_3:57223492-57223511 | None:intergenic | 35.0% | |
| ! | GAAGCATCAAAGTCTTTCAA+GGG | - | chr2_3:57223501-57223520 | Msa0301310:CDS | 35.0% |
| ATCAAAGTCTTTCAAGGGAA+AGG | - | chr2_3:57223506-57223525 | Msa0301310:CDS | 35.0% | |
| CAAAAACATAAGCACCCTTT+AGG | + | chr2_3:57223846-57223865 | None:intergenic | 35.0% | |
| ! | GAAACTGATAACGAAGATGT+TGG | - | chr2_3:57223923-57223942 | Msa0301310:CDS | 35.0% |
| AAGCCTGTTTCAGATTACTT+CGG | - | chr2_3:57223947-57223966 | Msa0301310:CDS | 35.0% | |
| ! | ATACCGAAGTAATCTGAAAC+AGG | + | chr2_3:57223953-57223972 | None:intergenic | 35.0% |
| TCAGATTACTTCGGTATTAG+TGG | - | chr2_3:57223956-57223975 | Msa0301310:CDS | 35.0% | |
| CAGATTACTTCGGTATTAGT+GGG | - | chr2_3:57223957-57223976 | Msa0301310:CDS | 35.0% | |
| ! | TTTTCTTCCATCATCGTTTC+CGG | + | chr2_3:57224132-57224151 | None:intergenic | 35.0% |
| GGTGACTATTGACAGAATTA+AGG | - | chr2_3:57224169-57224188 | Msa0301310:intron | 35.0% | |
| AGCAAAACTAACAGAGTCTA+AGG | + | chr2_3:57224212-57224231 | None:intergenic | 35.0% | |
| ! | CATTTTATCTCAGGCATTTG+GGG | - | chr2_3:57224316-57224335 | Msa0301310:intron | 35.0% |
| !!! | AAGGTTTTAGCTTGTCTTCA+AGG | + | chr2_3:57224349-57224368 | None:intergenic | 35.0% |
| ! | ATTGGGTCTGACTTGAAAAA+AGG | + | chr2_3:57224368-57224387 | None:intergenic | 35.0% |
| AGCTTACACTTTCAGGAATT+GGG | + | chr2_3:57224385-57224404 | None:intergenic | 35.0% | |
| TAGCTTACACTTTCAGGAAT+TGG | + | chr2_3:57224386-57224405 | None:intergenic | 35.0% | |
| GGTGATGTGAAAATAGTTGT+TGG | - | chr2_3:57224488-57224507 | Msa0301310:intron | 35.0% | |
| AATTGTCTTGGATGAGTCAA+AGG | - | chr2_3:57224526-57224545 | Msa0301310:intron | 35.0% | |
| !! | TGTATATCGGTTCCAAATGT+TGG | + | chr2_3:57224684-57224703 | None:intergenic | 35.0% |
| !! | CAAAACTTTTGTTTCCTGCT+GGG | + | chr2_3:57224952-57224971 | None:intergenic | 35.0% |
| !! | TCAAAACTTTTGTTTCCTGC+TGG | + | chr2_3:57224953-57224972 | None:intergenic | 35.0% |
| ! | TTACCTCTTTTATAGGCTTG+GGG | + | chr2_3:57225396-57225415 | None:intergenic | 35.0% |
| ! | CTTTACCTCTTTTATAGGCT+TGG | + | chr2_3:57225398-57225417 | None:intergenic | 35.0% |
| CAAGCCTATAAAAGAGGTAA+AGG | - | chr2_3:57225396-57225415 | Msa0301310:CDS | 35.0% | |
| CCTATAAAAGAGGTAAAGGA+GGG | - | chr2_3:57225400-57225419 | Msa0301310:CDS | 35.0% | |
| CTATAAAAGAGGTAAAGGAG+GGG | - | chr2_3:57225401-57225420 | Msa0301310:CDS | 35.0% | |
| TATAAAAGAGGTAAAGGAGG+GGG | - | chr2_3:57225402-57225421 | Msa0301310:CDS | 35.0% | |
| !!! | GTATTTAGAATTTTGGGGTG+AGG | - | chr2_3:57225467-57225486 | Msa0301310:CDS | 35.0% |
| TGTGACTGTGATGTGAGAAT+GGG | + | chr2_3:57221380-57221399 | None:intergenic | 40.0% | |
| GAAATTTGCGGAGAAACGAA+AGG | + | chr2_3:57221441-57221460 | None:intergenic | 40.0% | |
| TTCGCATAGAATGTGAGTGA+AGG | + | chr2_3:57221520-57221539 | None:intergenic | 40.0% | |
| !! | TCTTTTTCGTCGAATTCAGG+GGG | + | chr2_3:57221687-57221706 | None:intergenic | 40.0% |
| !! | GTCTTTTTCGTCGAATTCAG+GGG | + | chr2_3:57221688-57221707 | None:intergenic | 40.0% |
| !! | CGTCTTTTTCGTCGAATTCA+GGG | + | chr2_3:57221689-57221708 | None:intergenic | 40.0% |
| !! | ACGTCTTTTTCGTCGAATTC+AGG | + | chr2_3:57221690-57221709 | None:intergenic | 40.0% |
| TCATTGTCAAGCATTAGCAC+CGG | - | chr2_3:57221794-57221813 | Msa0301310:CDS | 40.0% | |
| CTTTAATTCAGTTGCAGCTG+CGG | + | chr2_3:57221826-57221845 | None:intergenic | 40.0% | |
| GCAGCTGCAACTGAATTAAA+GGG | - | chr2_3:57221825-57221844 | Msa0301310:CDS | 40.0% | |
| GGTGTTCATAAGAGTTACAC+TGG | - | chr2_3:57221948-57221967 | Msa0301310:intron | 40.0% | |
| ATTAAGAAGAAGACTGGACC+TGG | - | chr2_3:57222105-57222124 | Msa0301310:intron | 40.0% | |
| ! | ATGCATTCGAACAGAAGTGT+CGG | - | chr2_3:57222490-57222509 | Msa0301310:intron | 40.0% |
| CCATGACACGTTAGTATTCT+TGG | + | chr2_3:57222621-57222640 | None:intergenic | 40.0% | |
| CCAAGAATACTAACGTGTCA+TGG | - | chr2_3:57222618-57222637 | Msa0301310:CDS | 40.0% | |
| !! | TTAAACCGTCGGTGTTTTCA+TGG | - | chr2_3:57222708-57222727 | Msa0301310:intron | 40.0% |
| !! | TAAACCGTCGGTGTTTTCAT+GGG | - | chr2_3:57222709-57222728 | Msa0301310:intron | 40.0% |
| TCGATGAAGCTGACGATTAA+AGG | - | chr2_3:57222846-57222865 | Msa0301310:intron | 40.0% | |
| CCCTACATATTGTGCATAAC+AGG | + | chr2_3:57222937-57222956 | None:intergenic | 40.0% | |
| ! | TGTCAGTTTTTACCAGACTG+TGG | - | chr2_3:57223002-57223021 | Msa0301310:CDS | 40.0% |
| ! | ATTTTCCATCTGTAGGGACA+CGG | + | chr2_3:57223201-57223220 | None:intergenic | 40.0% |
| TACCAAAGGAATCTTGTTGG+AGG | + | chr2_3:57223254-57223273 | None:intergenic | 40.0% | |
| GAAATTGCTCCCAGTATTTC+AGG | - | chr2_3:57223479-57223498 | Msa0301310:CDS | 40.0% | |
| !! | GGAAGCATCAAAGTCTTTCA+AGG | - | chr2_3:57223500-57223519 | Msa0301310:CDS | 40.0% |
| CTGAATTCTTGTCGAAAGCA+AGG | + | chr2_3:57223630-57223649 | None:intergenic | 40.0% | |
| CTTGCTTTCGACAAGAATTC+AGG | - | chr2_3:57223628-57223647 | Msa0301310:intron | 40.0% | |
| AGGTGTAGTGTACTTCTTAG+TGG | - | chr2_3:57223648-57223667 | Msa0301310:CDS | 40.0% | |
| GGTGTAGTGTACTTCTTAGT+GGG | - | chr2_3:57223649-57223668 | Msa0301310:CDS | 40.0% | |
| AAACATAAGCACCCTTTAGG+AGG | + | chr2_3:57223843-57223862 | None:intergenic | 40.0% | |
| AGCACAAAGATCAACTGCAA+TGG | + | chr2_3:57223899-57223918 | None:intergenic | 40.0% | |
| ACCAGTTGAATTTCCAATGC+AGG | - | chr2_3:57224094-57224113 | Msa0301310:intron | 40.0% | |
| ACCTGCATTGGAAATTCAAC+TGG | + | chr2_3:57224098-57224117 | None:intergenic | 40.0% | |
| ! | ACTAACAGAGTCTAAGGCAA+GGG | + | chr2_3:57224206-57224225 | None:intergenic | 40.0% |
| ! | AACTAACAGAGTCTAAGGCA+AGG | + | chr2_3:57224207-57224226 | None:intergenic | 40.0% |
| CTCTCTTGTAATAGCCAAGA+TGG | - | chr2_3:57224735-57224754 | Msa0301310:intron | 40.0% | |
| CTTGTAATAGCCAAGATGGA+CGG | - | chr2_3:57224739-57224758 | Msa0301310:intron | 40.0% | |
| ! | ATTTTGTGTTCCGTCCATCT+TGG | + | chr2_3:57224752-57224771 | None:intergenic | 40.0% |
| AACACAAAATGAGCATCCCA+GGG | - | chr2_3:57224762-57224781 | Msa0301310:CDS | 40.0% | |
| ATGTTCACTTTGCAGTCTGA+TGG | - | chr2_3:57224905-57224924 | Msa0301310:intron | 40.0% | |
| CTGCTTGAGGAACTTGTAAA+AGG | + | chr2_3:57225156-57225175 | None:intergenic | 40.0% | |
| ACATCAGAGCTCTCTGATTT+AGG | + | chr2_3:57225221-57225240 | None:intergenic | 40.0% | |
| !! | GTTGCTACTTTGGTTCTCTT+TGG | + | chr2_3:57225261-57225280 | None:intergenic | 40.0% |
| GCCTATAAAAGAGGTAAAGG+AGG | - | chr2_3:57225399-57225418 | Msa0301310:CDS | 40.0% | |
| ! | CCCTCCTTTACCTCTTTTAT+AGG | + | chr2_3:57225403-57225422 | None:intergenic | 40.0% |
| ATAAAAGAGGTAAAGGAGGG+GGG | - | chr2_3:57225403-57225422 | Msa0301310:CDS | 40.0% | |
| GTGTGACTGTGATGTGAGAA+TGG | + | chr2_3:57221381-57221400 | None:intergenic | 45.0% | |
| CGAAAGGAAGAGAGAAACAG+AGG | + | chr2_3:57221425-57221444 | None:intergenic | 45.0% | |
| GAAGAAGAGAAGGGTAGTGA+GGG | + | chr2_3:57221493-57221512 | None:intergenic | 45.0% | |
| AGAAGAAGAGAAGGGTAGTG+AGG | + | chr2_3:57221494-57221513 | None:intergenic | 45.0% | |
| GAAGGAGGAGAAGAAGAGAA+GGG | + | chr2_3:57221502-57221521 | None:intergenic | 45.0% | |
| TGAAGGAGGAGAAGAAGAGA+AGG | + | chr2_3:57221503-57221522 | None:intergenic | 45.0% | |
| GCATAGAATGTGAGTGAAGG+AGG | + | chr2_3:57221517-57221536 | None:intergenic | 45.0% | |
| GGAGAAGTCTTCTTCGAGAT+CGG | + | chr2_3:57221637-57221656 | None:intergenic | 45.0% | |
| GATCTCGAAGAAGACTTCTC+CGG | - | chr2_3:57221636-57221655 | Msa0301310:three_prime_UTR | 45.0% | |
| TAGTCGAATTCTACGCACCA+TGG | - | chr2_3:57221766-57221785 | Msa0301310:CDS | 45.0% | |
| CGCAGCTGCAACTGAATTAA+AGG | - | chr2_3:57221824-57221843 | Msa0301310:CDS | 45.0% | |
| GCAGAGAAGCTATTGTGACA+TGG | - | chr2_3:57222082-57222101 | Msa0301310:intron | 45.0% | |
| !! | CGACACTGACTCATCAACTT+TGG | - | chr2_3:57222377-57222396 | Msa0301310:intron | 45.0% |
| GTGTCAACAGTGACACATGT+TGG | - | chr2_3:57222465-57222484 | Msa0301310:CDS | 45.0% | |
| TCAACCCATGAAAACACCGA+CGG | + | chr2_3:57222716-57222735 | None:intergenic | 45.0% | |
| ! | TTCATGGGTTGACTCTTGTG+TGG | - | chr2_3:57222724-57222743 | Msa0301310:intron | 45.0% |
| TCTTGACAAGGATCAACGCA+GGG | + | chr2_3:57223074-57223093 | None:intergenic | 45.0% | |
| TTCTTGACAAGGATCAACGC+AGG | + | chr2_3:57223075-57223094 | None:intergenic | 45.0% | |
| CTCCTCCAACAAGATTCCTT+TGG | - | chr2_3:57223249-57223268 | Msa0301310:intron | 45.0% | |
| ATCCAGCTCTTCCTCCTAAA+GGG | - | chr2_3:57223829-57223848 | Msa0301310:intron | 45.0% | |
| GCAGTTGATCTTTGTGCTTG+TGG | - | chr2_3:57223901-57223920 | Msa0301310:CDS | 45.0% | |
| GTGTATGCAAGTACCTGCAT+TGG | + | chr2_3:57224110-57224129 | None:intergenic | 45.0% | |
| ATGCAGGTACTTGCATACAC+CGG | - | chr2_3:57224110-57224129 | Msa0301310:intron | 45.0% | |
| TTAACTCGGCGACAGAATGA+TGG | - | chr2_3:57224467-57224486 | Msa0301310:intron | 45.0% | |
| AGGGTCAAAGTTGTACCTCA+AGG | + | chr2_3:57224559-57224578 | None:intergenic | 45.0% | |
| CAGATATATGCTCCTTGGTG+TGG | - | chr2_3:57224652-57224671 | Msa0301310:intron | 45.0% | |
| TCGGTTCCAAATGTTGGCAA+TGG | + | chr2_3:57224678-57224697 | None:intergenic | 45.0% | |
| CAAGAGAGTCAATACTGCGA+AGG | + | chr2_3:57224723-57224742 | None:intergenic | 45.0% | |
| GAACACAAAATGAGCATCCC+AGG | - | chr2_3:57224761-57224780 | Msa0301310:intron | 45.0% | |
| ! | TTTGGGTTTACCTTTGCCCT+GGG | + | chr2_3:57224781-57224800 | None:intergenic | 45.0% |
| ! | ATTTGGGTTTACCTTTGCCC+TGG | + | chr2_3:57224782-57224801 | None:intergenic | 45.0% |
| !! | CTGGTTTCTGGAGCTTGAAT+GGG | + | chr2_3:57225190-57225209 | None:intergenic | 45.0% |
| TCTGATTTAGGAGTTGAGGC+TGG | + | chr2_3:57225209-57225228 | None:intergenic | 45.0% | |
| GCTCTCTGATTTAGGAGTTG+AGG | + | chr2_3:57225213-57225232 | None:intergenic | 45.0% | |
| ! | ATCAGAGAGCTCTGATGTCA+AGG | - | chr2_3:57225223-57225242 | Msa0301310:CDS | 45.0% |
| ! | TGACATCGCTGTTGCTACTT+TGG | + | chr2_3:57225271-57225290 | None:intergenic | 45.0% |
| AAGTAGCAACAGCGATGTCA+AGG | - | chr2_3:57225271-57225290 | Msa0301310:CDS | 45.0% | |
| CTTGGGGAGAGAAGAATTAG+TGG | + | chr2_3:57225380-57225399 | None:intergenic | 45.0% | |
| TCTCCCCAAGCCTATAAAAG+AGG | - | chr2_3:57225390-57225409 | Msa0301310:CDS | 45.0% | |
| TAAAAGAGGTAAAGGAGGGG+GGG | - | chr2_3:57225404-57225423 | Msa0301310:CDS | 45.0% | |
| AGAGAAGGGTAGTGAGGGAA+AGG | + | chr2_3:57221488-57221507 | None:intergenic | 50.0% | |
| TTTCGTCGAATTCAGGGGGT+TGG | + | chr2_3:57221683-57221702 | None:intergenic | 50.0% | |
| GAATTCTACGCACCATGGTG+TGG | - | chr2_3:57221771-57221790 | Msa0301310:CDS | 50.0% | |
| GCTTGACAATGACCACACCA+TGG | + | chr2_3:57221786-57221805 | None:intergenic | 50.0% | |
| TTTGGACTTGGCGGAATTCG+TGG | - | chr2_3:57222667-57222686 | Msa0301310:intron | 50.0% | |
| TATGTAGGGTCCTGAGAGTG+AGG | - | chr2_3:57222948-57222967 | Msa0301310:intron | 50.0% | |
| CAACTTCAGGATCCACAGTC+TGG | + | chr2_3:57223017-57223036 | None:intergenic | 50.0% | |
| GATCCAGCTCTTCCTCCTAA+AGG | - | chr2_3:57223828-57223847 | Msa0301310:intron | 50.0% | |
| GCATACACCGGAAACGATGA+TGG | - | chr2_3:57224122-57224141 | Msa0301310:intron | 50.0% | |
| GTCAAAGGACGTTCTCCTTG+AGG | - | chr2_3:57224541-57224560 | Msa0301310:intron | 50.0% | |
| GTGTGGCCATTGCCAACATT+TGG | - | chr2_3:57224669-57224688 | Msa0301310:intron | 50.0% | |
| AAATGAGCATCCCAGGGCAA+AGG | - | chr2_3:57224768-57224787 | Msa0301310:CDS | 50.0% | |
| CTGGGAAGAAGAGAAGAGTG+GGG | + | chr2_3:57224934-57224953 | None:intergenic | 50.0% | |
| GCTGGGAAGAAGAGAAGAGT+GGG | + | chr2_3:57224935-57224954 | None:intergenic | 50.0% | |
| TGCTGGGAAGAAGAGAAGAG+TGG | + | chr2_3:57224936-57224955 | None:intergenic | 50.0% | |
| ACTCTTCTCTTCTTCCCAGC+AGG | - | chr2_3:57224935-57224954 | Msa0301310:intron | 50.0% | |
| AGATCACTCTCGCACACACA+CGG | + | chr2_3:57225046-57225065 | None:intergenic | 50.0% | |
| GTGCGAGAGTGATCTGCATA+TGG | - | chr2_3:57225051-57225070 | Msa0301310:CDS | 50.0% | |
| ! | GGATTGATGCATGCTGCTTG+AGG | + | chr2_3:57225169-57225188 | None:intergenic | 50.0% |
| !! | GCTGGTTTCTGGAGCTTGAA+TGG | + | chr2_3:57225191-57225210 | None:intergenic | 50.0% |
| !! | TAGGAGTTGAGGCTGGTTTC+TGG | + | chr2_3:57225202-57225221 | None:intergenic | 50.0% |
| TTCCTCGACGAACCAGAAGC+TGG | - | chr2_3:57221567-57221586 | Msa0301310:three_prime_UTR | 55.0% | |
| GTGGTGGTTTCACCAGCTTC+TGG | + | chr2_3:57221582-57221601 | None:intergenic | 55.0% | |
| GTCTTCTTCGAGATCGGCGT+CGG | + | chr2_3:57221631-57221650 | None:intergenic | 55.0% | |
| !! | CAGAAGTGTCGGTGCTACGT+AGG | - | chr2_3:57222501-57222520 | Msa0301310:intron | 55.0% |
| GACTTGGCGGAATTCGTGGA+TGG | - | chr2_3:57222671-57222690 | Msa0301310:intron | 55.0% | |
| TGAGAGTGAGGAGCTAGCTG+CGG | - | chr2_3:57222960-57222979 | Msa0301310:intron | 55.0% | |
| ! | AAGGATCAACGCAGGGCGTT+TGG | + | chr2_3:57223067-57223086 | None:intergenic | 55.0% |
| GTTCACCGTGTCCCTACAGA+TGG | - | chr2_3:57223193-57223212 | Msa0301310:intron | 55.0% | |
| ! | CACCCTTTAGGAGGAAGAGC+TGG | + | chr2_3:57223834-57223853 | None:intergenic | 55.0% |
| TGTTGGCAATGGCCACACCA+AGG | + | chr2_3:57224667-57224686 | None:intergenic | 55.0% | |
| GATCACTCTCGCACACACAC+GGG | + | chr2_3:57225045-57225064 | None:intergenic | 55.0% | |
| !! | CACCAGCTTCTGGTTCGTCG+AGG | + | chr2_3:57221572-57221591 | None:intergenic | 60.0% |
| ACCACCACACACCACCACCA+CGG | - | chr2_3:57221597-57221616 | Msa0301310:three_prime_UTR | 60.0% | |
| GTTGCAGCTGCGGCGTATTC+CGG | + | chr2_3:57221816-57221835 | None:intergenic | 60.0% | |
| GCAGCTAGCTCCTCACTCTC+AGG | + | chr2_3:57222961-57222980 | None:intergenic | 60.0% | |
| AGCTGCGGCTTCACGTCTTG+AGG | - | chr2_3:57222975-57222994 | Msa0301310:intron | 60.0% | |
| AAGAGGTAAAGGAGGGGGGG+TGG | - | chr2_3:57225407-57225426 | Msa0301310:CDS | 60.0% | |
| AGGGGGGGTGGACAAATGCA+AGG | - | chr2_3:57225419-57225438 | Msa0301310:CDS | 60.0% | |
| !! | GTGGTGGTGGTGTGTGGTGG+TGG | + | chr2_3:57221598-57221617 | None:intergenic | 65.0% |
| !! | ATCGCCGTGGTGGTGGTGTG+TGG | + | chr2_3:57221604-57221623 | None:intergenic | 65.0% |
| CGGAATCATCGCCGTGGTGG+TGG | + | chr2_3:57221611-57221630 | None:intergenic | 65.0% | |
| CGTCGGAATCATCGCCGTGG+TGG | + | chr2_3:57221614-57221633 | None:intergenic | 65.0% | |
| !! | GCCGTGGTGGTGGTGTGTGG+TGG | + | chr2_3:57221601-57221620 | None:intergenic | 70.0% |
| ! | CGGCGTCGGAATCATCGCCG+TGG | + | chr2_3:57221617-57221636 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 57221372 | 57225605 | 57221372 | ID=Msa0301310;Name=Msa0301310 |
| chr2_3 | mRNA | 57221372 | 57225605 | 57221372 | ID=Msa0301310-mRNA-1;Parent=Msa0301310;Name=Msa0301310-mRNA-1;_AED=0.07;_eAED=0.07;_QI=96|1|1|1|1|1|12|301|565 |
| chr2_3 | exon | 57221372 | 57221855 | 57221372 | ID=Msa0301310-mRNA-1:exon:18450;Parent=Msa0301310-mRNA-1 |
| chr2_3 | exon | 57222001 | 57222057 | 57222001 | ID=Msa0301310-mRNA-1:exon:18449;Parent=Msa0301310-mRNA-1 |
| chr2_3 | exon | 57222188 | 57222322 | 57222188 | ID=Msa0301310-mRNA-1:exon:18448;Parent=Msa0301310-mRNA-1 |
| chr2_3 | exon | 57222415 | 57222495 | 57222415 | ID=Msa0301310-mRNA-1:exon:18447;Parent=Msa0301310-mRNA-1 |
| chr2_3 | exon | 57222580 | 57222648 | 57222580 | ID=Msa0301310-mRNA-1:exon:18446;Parent=Msa0301310-mRNA-1 |
| chr2_3 | exon | 57222787 | 57222861 | 57222787 | ID=Msa0301310-mRNA-1:exon:18445;Parent=Msa0301310-mRNA-1 |
| chr2_3 | exon | 57222986 | 57223072 | 57222986 | ID=Msa0301310-mRNA-1:exon:18444;Parent=Msa0301310-mRNA-1 |
| chr2_3 | exon | 57223450 | 57223530 | 57223450 | ID=Msa0301310-mRNA-1:exon:18443;Parent=Msa0301310-mRNA-1 |
| chr2_3 | exon | 57223647 | 57223765 | 57223647 | ID=Msa0301310-mRNA-1:exon:18442;Parent=Msa0301310-mRNA-1 |
| chr2_3 | exon | 57223857 | 57224022 | 57223857 | ID=Msa0301310-mRNA-1:exon:18441;Parent=Msa0301310-mRNA-1 |
| chr2_3 | exon | 57224762 | 57224891 | 57224762 | ID=Msa0301310-mRNA-1:exon:18440;Parent=Msa0301310-mRNA-1 |
| chr2_3 | exon | 57224995 | 57225605 | 57224995 | ID=Msa0301310-mRNA-1:exon:18439;Parent=Msa0301310-mRNA-1 |
| chr2_3 | five_prime_UTR | 57225510 | 57225605 | 57225510 | ID=Msa0301310-mRNA-1:five_prime_utr;Parent=Msa0301310-mRNA-1 |
| chr2_3 | CDS | 57224995 | 57225509 | 57224995 | ID=Msa0301310-mRNA-1:cds;Parent=Msa0301310-mRNA-1 |
| chr2_3 | CDS | 57224762 | 57224891 | 57224762 | ID=Msa0301310-mRNA-1:cds;Parent=Msa0301310-mRNA-1 |
| chr2_3 | CDS | 57223857 | 57224022 | 57223857 | ID=Msa0301310-mRNA-1:cds;Parent=Msa0301310-mRNA-1 |
| chr2_3 | CDS | 57223647 | 57223765 | 57223647 | ID=Msa0301310-mRNA-1:cds;Parent=Msa0301310-mRNA-1 |
| chr2_3 | CDS | 57223450 | 57223530 | 57223450 | ID=Msa0301310-mRNA-1:cds;Parent=Msa0301310-mRNA-1 |
| chr2_3 | CDS | 57222986 | 57223072 | 57222986 | ID=Msa0301310-mRNA-1:cds;Parent=Msa0301310-mRNA-1 |
| chr2_3 | CDS | 57222787 | 57222861 | 57222787 | ID=Msa0301310-mRNA-1:cds;Parent=Msa0301310-mRNA-1 |
| chr2_3 | CDS | 57222580 | 57222648 | 57222580 | ID=Msa0301310-mRNA-1:cds;Parent=Msa0301310-mRNA-1 |
| chr2_3 | CDS | 57222415 | 57222495 | 57222415 | ID=Msa0301310-mRNA-1:cds;Parent=Msa0301310-mRNA-1 |
| chr2_3 | CDS | 57222188 | 57222322 | 57222188 | ID=Msa0301310-mRNA-1:cds;Parent=Msa0301310-mRNA-1 |
| chr2_3 | CDS | 57222001 | 57222057 | 57222001 | ID=Msa0301310-mRNA-1:cds;Parent=Msa0301310-mRNA-1 |
| chr2_3 | CDS | 57221673 | 57221855 | 57221673 | ID=Msa0301310-mRNA-1:cds;Parent=Msa0301310-mRNA-1 |
| chr2_3 | three_prime_UTR | 57221372 | 57221672 | 57221372 | ID=Msa0301310-mRNA-1:three_prime_utr;Parent=Msa0301310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
