Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221950 | XP_003597231.1 | 97.714 | 350 | 8 | 0 | 54 | 403 | 215 | 564 | 0.0 | 691 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221950 | sp|Q9FF55|PDI14_ARATH | 70.752 | 359 | 95 | 2 | 54 | 403 | 240 | 597 | 0.0 | 525 |
| Msa0221950 | sp|Q9FF55|PDI14_ARATH | 42.478 | 113 | 58 | 6 | 248 | 357 | 96 | 204 | 1.16e-14 | 79.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221950 | G7IRR6 | 97.714 | 350 | 8 | 0 | 54 | 403 | 215 | 564 | 0.0 | 691 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0221950 | Msa0263530 | 0.857394 | 1.681625e-62 | -8.615850e-47 |
| Msa0221950 | Msa0301310 | 0.864722 | 9.912118e-65 | -8.615850e-47 |
| Msa0221950 | Msa0338680 | 0.856369 | 3.370693e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221950 | MtrunA17_Chr2g0326581 | 97.714 | 350 | 8 | 0 | 54 | 403 | 215 | 564 | 0.0 | 691 |
| Msa0221950 | MtrunA17_Chr2g0326581 | 43.158 | 95 | 49 | 4 | 250 | 341 | 73 | 165 | 5.37e-12 | 67.4 |
| Msa0221950 | MtrunA17_Chr4g0029181 | 78.000 | 350 | 74 | 1 | 54 | 403 | 237 | 583 | 0.0 | 558 |
| Msa0221950 | MtrunA17_Chr2g0331681 | 33.648 | 318 | 210 | 1 | 54 | 371 | 201 | 517 | 2.41e-63 | 211 |
| Msa0221950 | MtrunA17_Chr2g0326131 | 34.562 | 217 | 141 | 1 | 149 | 365 | 10 | 225 | 4.31e-45 | 155 |
| Msa0221950 | MtrunA17_Chr3g0124851 | 32.986 | 288 | 178 | 9 | 60 | 339 | 183 | 463 | 9.06e-36 | 137 |
| Msa0221950 | MtrunA17_Chr1g0194961 | 37.500 | 184 | 102 | 5 | 159 | 340 | 62 | 234 | 1.36e-23 | 100 |
| Msa0221950 | MtrunA17_Chr1g0194961 | 35.185 | 108 | 65 | 3 | 264 | 369 | 38 | 142 | 1.31e-13 | 71.6 |
| Msa0221950 | MtrunA17_Chr7g0271721 | 34.239 | 184 | 104 | 6 | 159 | 340 | 57 | 225 | 4.87e-17 | 82.0 |
| Msa0221950 | MtrunA17_Chr7g0271721 | 35.345 | 116 | 70 | 3 | 256 | 369 | 25 | 137 | 6.58e-15 | 75.5 |
| Msa0221950 | MtrunA17_Chr5g0438731 | 27.670 | 206 | 131 | 6 | 161 | 358 | 96 | 291 | 2.33e-13 | 71.6 |
| Msa0221950 | MtrunA17_Chr5g0438731 | 30.986 | 142 | 92 | 3 | 263 | 403 | 67 | 203 | 6.57e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221950 | AT5G60640.1 | 70.752 | 359 | 95 | 2 | 54 | 403 | 240 | 597 | 0.0 | 525 |
| Msa0221950 | AT5G60640.1 | 42.478 | 113 | 58 | 6 | 248 | 357 | 96 | 204 | 1.18e-15 | 79.3 |
| Msa0221950 | AT3G54960.1 | 68.000 | 350 | 106 | 3 | 54 | 403 | 236 | 579 | 7.34e-172 | 493 |
| Msa0221950 | AT3G54960.1 | 34.959 | 123 | 72 | 4 | 244 | 364 | 88 | 204 | 6.35e-13 | 70.9 |
| Msa0221950 | AT5G60640.2 | 72.603 | 292 | 80 | 0 | 54 | 345 | 240 | 531 | 5.48e-157 | 453 |
| Msa0221950 | AT5G60640.2 | 42.478 | 113 | 58 | 6 | 248 | 357 | 96 | 204 | 1.28e-15 | 79.0 |
| Msa0221950 | AT3G54960.2 | 69.004 | 271 | 84 | 0 | 54 | 324 | 236 | 506 | 4.24e-139 | 407 |
| Msa0221950 | AT3G54960.2 | 34.959 | 123 | 72 | 4 | 244 | 364 | 88 | 204 | 5.75e-13 | 70.9 |
| Msa0221950 | AT5G60640.3 | 51.253 | 359 | 101 | 6 | 54 | 403 | 240 | 533 | 5.18e-109 | 331 |
| Msa0221950 | AT5G60640.3 | 42.478 | 113 | 58 | 6 | 248 | 357 | 96 | 204 | 8.62e-16 | 79.7 |
| Msa0221950 | AT3G16110.1 | 33.226 | 310 | 203 | 3 | 40 | 348 | 202 | 508 | 4.92e-56 | 193 |
| Msa0221950 | AT1G52260.1 | 32.226 | 301 | 201 | 2 | 40 | 339 | 204 | 502 | 6.86e-55 | 190 |
| Msa0221950 | AT1G21750.2 | 35.625 | 320 | 177 | 15 | 60 | 364 | 180 | 485 | 2.09e-42 | 155 |
| Msa0221950 | AT1G21750.1 | 35.556 | 315 | 177 | 14 | 60 | 362 | 180 | 480 | 1.12e-41 | 154 |
| Msa0221950 | AT1G77510.1 | 34.006 | 347 | 195 | 15 | 60 | 391 | 179 | 506 | 4.61e-37 | 141 |
| Msa0221950 | AT2G47470.2 | 34.239 | 184 | 108 | 5 | 159 | 340 | 56 | 228 | 2.86e-21 | 93.2 |
| Msa0221950 | AT2G47470.2 | 33.333 | 111 | 67 | 3 | 270 | 378 | 37 | 142 | 2.99e-13 | 70.1 |
| Msa0221950 | AT2G47470.3 | 34.239 | 184 | 108 | 5 | 159 | 340 | 56 | 228 | 3.89e-21 | 93.6 |
| Msa0221950 | AT2G47470.3 | 34.579 | 107 | 63 | 3 | 274 | 378 | 41 | 142 | 3.77e-13 | 70.5 |
| Msa0221950 | AT2G47470.4 | 34.239 | 184 | 108 | 5 | 159 | 340 | 56 | 228 | 4.65e-21 | 93.6 |
| Msa0221950 | AT2G47470.4 | 35.714 | 98 | 59 | 2 | 274 | 369 | 41 | 136 | 3.16e-13 | 70.9 |
| Msa0221950 | AT2G47470.1 | 34.239 | 184 | 108 | 5 | 159 | 340 | 56 | 228 | 5.94e-21 | 94.0 |
| Msa0221950 | AT2G47470.1 | 35.714 | 98 | 59 | 2 | 274 | 369 | 41 | 136 | 3.36e-13 | 70.9 |
| Msa0221950 | AT1G04980.1 | 27.830 | 212 | 132 | 6 | 159 | 358 | 66 | 268 | 3.04e-15 | 77.4 |
| Msa0221950 | AT1G04980.1 | 29.861 | 144 | 95 | 2 | 263 | 403 | 40 | 180 | 9.16e-11 | 63.9 |
| Msa0221950 | AT2G32920.1 | 27.273 | 209 | 136 | 5 | 161 | 361 | 66 | 266 | 7.38e-14 | 73.2 |
| Msa0221950 | AT2G32920.1 | 31.373 | 102 | 69 | 1 | 260 | 360 | 35 | 136 | 8.17e-11 | 63.9 |
Find 91 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATAGCTTACACTTTC+AGG | 0.073604 | 2_1:+70817876 | None:intergenic |
| TAGGAGTTGAGGCTGGTTTC+TGG | 0.153170 | 2_1:+70817066 | None:intergenic |
| GAAATTGCTCCCAGTATTTC+AGG | 0.203282 | 2_1:-70818786 | Msa0221950:CDS |
| GAAGAAAAGCTCAACCATTT+TGG | 0.206003 | 2_1:-70819166 | Msa0221950:intron |
| ACATCAGAGCTCTCTGATTT+AGG | 0.211013 | 2_1:+70817047 | None:intergenic |
| CCAAAGACTGGAAGGGTATA+AGG | 0.243707 | 2_1:+70819542 | None:intergenic |
| TAGCTTACACTTTCAGGAAT+TGG | 0.267348 | 2_1:+70817882 | None:intergenic |
| ATAATTACCTGTTTCTTGAT+TGG | 0.283200 | 2_1:+70818949 | None:intergenic |
| CCTTATACCCTTCCAGTCTT+TGG | 0.285106 | 2_1:-70819542 | Msa0221950:CDS |
| TTGAAAAGCTTTGCAACTTC+AGG | 0.285270 | 2_1:+70819238 | None:intergenic |
| TTTGATGCTTCCTGAAATAC+TGG | 0.295344 | 2_1:+70818776 | None:intergenic |
| GTTGCTACTTTGGTTCTCTT+TGG | 0.295651 | 2_1:+70817007 | None:intergenic |
| GTCTTCTTGCGGTCACGTTC+AGG | 0.316986 | 2_1:-70819655 | Msa0221950:CDS |
| AGAAATTAAACAAACCAAAA+TGG | 0.339530 | 2_1:+70819152 | None:intergenic |
| CTGCTTGAGGAACTTGTAAA+AGG | 0.346354 | 2_1:+70817112 | None:intergenic |
| AGCTTACACTTTCAGGAATT+GGG | 0.357347 | 2_1:+70817883 | None:intergenic |
| GCTGGTTTCTGGAGCTTGAA+TGG | 0.364344 | 2_1:+70817077 | None:intergenic |
| GGTGACTATTGACAGAATTA+AGG | 0.380026 | 2_1:-70818096 | Msa0221950:intron |
| CTGGTTTCTGGAGCTTGAAT+GGG | 0.380359 | 2_1:+70817078 | None:intergenic |
| CTCCTCCAACAAGATTCCTT+TGG | 0.388801 | 2_1:-70819016 | Msa0221950:CDS |
| AAGGATCAACGCAGGGCGTT+TGG | 0.389545 | 2_1:+70819201 | None:intergenic |
| TGAAAATCCAATCAAGAAAC+AGG | 0.402093 | 2_1:-70818956 | Msa0221950:intron |
| TGACATCGCTGTTGCTACTT+TGG | 0.410750 | 2_1:+70816997 | None:intergenic |
| AGCGATTGAGGTGGTTCCTT+CGG | 0.412707 | 2_1:+70819600 | None:intergenic |
| TTTGCAAGCTTGTTGTATAT+CGG | 0.417814 | 2_1:+70817571 | None:intergenic |
| TCCATTGTGGTTGATATGCT+TGG | 0.420379 | 2_1:-70819677 | None:intergenic |
| ATTTGGGTTTACCTTTGCCC+TGG | 0.431662 | 2_1:+70817486 | None:intergenic |
| ATACCGAAGTAATCTGAAAC+AGG | 0.440539 | 2_1:+70818315 | None:intergenic |
| GTGTGGCCATTGCCAACATT+TGG | 0.443950 | 2_1:-70817596 | Msa0221950:CDS |
| CTAAGGTGACTGCCAAAGAC+TGG | 0.446151 | 2_1:+70819530 | None:intergenic |
| TCAGATTACTTCGGTATTAG+TGG | 0.447352 | 2_1:-70818309 | Msa0221950:CDS |
| TGTTACCAAAGGAATCTTGT+TGG | 0.449876 | 2_1:+70819011 | None:intergenic |
| CAACTTCAGGATCCACAGTC+TGG | 0.454592 | 2_1:+70819251 | None:intergenic |
| GGAAGAAAATTTGTGTTTGA+AGG | 0.454888 | 2_1:-70818122 | Msa0221950:CDS |
| GCAGCTAGCTCCTCACTCTC+AGG | 0.456501 | 2_1:+70819307 | None:intergenic |
| GGAAGCATCAAAGTCTTTCA+AGG | 0.466842 | 2_1:-70818765 | Msa0221950:CDS |
| CAAAGACTGGAAGGGTATAA+GGG | 0.468964 | 2_1:+70819543 | None:intergenic |
| TGTATATCGGTTCCAAATGT+TGG | 0.475373 | 2_1:+70817584 | None:intergenic |
| ATGTTCACTTTGCAGTCTGA+TGG | 0.480322 | 2_1:-70817360 | Msa0221950:intron |
| AAAATTTGTGTTTGAAGGAG+AGG | 0.487863 | 2_1:-70818117 | Msa0221950:CDS |
| ACTCTTCTCTTCTTCCCAGC+AGG | 0.489317 | 2_1:-70817330 | Msa0221950:CDS |
| TTTGGGTTTACCTTTGCCCT+GGG | 0.490545 | 2_1:+70817487 | None:intergenic |
| GAATCGTCAGGCAGCGATTG+AGG | 0.498617 | 2_1:+70819588 | None:intergenic |
| CTCTCTTGTAATAGCCAAGA+TGG | 0.503883 | 2_1:-70817530 | Msa0221950:CDS |
| TTTCTTCCTCTTTCTTGACA+AGG | 0.508368 | 2_1:+70819182 | None:intergenic |
| ACGATTCTGCACGATGAGCT+TGG | 0.509182 | 2_1:-70819572 | Msa0221950:CDS |
| GGCATCTGCACTTGTCATCA+AGG | 0.511506 | 2_1:+70819621 | None:intergenic |
| TCTGATTTAGGAGTTGAGGC+TGG | 0.514207 | 2_1:+70817059 | None:intergenic |
| CAGATTACTTCGGTATTAGT+GGG | 0.514292 | 2_1:-70818308 | Msa0221950:CDS |
| GAACACAAAATGAGCATCCC+AGG | 0.515907 | 2_1:-70817504 | Msa0221950:CDS |
| ATCAAAGTCTTTCAAGGGAA+AGG | 0.517288 | 2_1:-70818759 | Msa0221950:intron |
| GGTGATGTGAAAATAGTTGT+TGG | 0.517934 | 2_1:-70817777 | Msa0221950:CDS |
| TTAACTCGGCGACAGAATGA+TGG | 0.534871 | 2_1:-70817798 | Msa0221950:intron |
| AATATCAGATATATGCTCCT+TGG | 0.540524 | 2_1:-70817618 | Msa0221950:intron |
| ATCAGAGAGCTCTGATGTCA+AGG | 0.545354 | 2_1:-70817042 | Msa0221950:CDS |
| GCATACACCGGAAACGATGA+TGG | 0.546485 | 2_1:-70818143 | Msa0221950:CDS |
| GCAGTTGATCTTTGTGCTTG+TGG | 0.546998 | 2_1:-70818364 | Msa0221950:intron |
| TACCAAAGGAATCTTGTTGG+AGG | 0.552032 | 2_1:+70819014 | None:intergenic |
| GAAACTGATAACGAAGATGT+TGG | 0.553749 | 2_1:-70818342 | Msa0221950:CDS |
| GCTGGGAAGAAGAGAAGAGT+GGG | 0.561355 | 2_1:+70817333 | None:intergenic |
| GCTCATCGTGCAGAATCGTC+AGG | 0.562489 | 2_1:+70819576 | None:intergenic |
| AATTGTCTTGGATGAGTCAA+AGG | 0.563831 | 2_1:-70817739 | Msa0221950:CDS |
| GCTCTCTGATTTAGGAGTTG+AGG | 0.567708 | 2_1:+70817055 | None:intergenic |
| AGCTGCGGCTTCACGTCTTG+AGG | 0.570216 | 2_1:-70819290 | Msa0221950:CDS |
| AAGCCTGTTTCAGATTACTT+CGG | 0.573742 | 2_1:-70818318 | Msa0221950:CDS |
| GTTGATCCTTGTCAAGAAAG+AGG | 0.574493 | 2_1:-70819188 | Msa0221950:CDS |
| TGATATGCTTGGTCTTCTTG+CGG | 0.574502 | 2_1:-70819666 | None:intergenic |
| TTCTTGACAAGGATCAACGC+AGG | 0.576510 | 2_1:+70819193 | None:intergenic |
| CAGATATATGCTCCTTGGTG+TGG | 0.578248 | 2_1:-70817613 | Msa0221950:CDS |
| GGTGACTGCCAAAGACTGGA+AGG | 0.579164 | 2_1:+70819534 | None:intergenic |
| AAGTAGCAACAGCGATGTCA+AGG | 0.589607 | 2_1:-70816994 | Msa0221950:CDS |
| TCGGTTCCAAATGTTGGCAA+TGG | 0.589689 | 2_1:+70817590 | None:intergenic |
| GGATTGATGCATGCTGCTTG+AGG | 0.593443 | 2_1:+70817099 | None:intergenic |
| AAATGAGCATCCCAGGGCAA+AGG | 0.601467 | 2_1:-70817497 | Msa0221950:intron |
| GTCAAAGGACGTTCTCCTTG+AGG | 0.604589 | 2_1:-70817724 | Msa0221950:intron |
| TATGTAGGGTCCTGAGAGTG+AGG | 0.607409 | 2_1:-70819317 | Msa0221950:intron |
| GAAGCATCAAAGTCTTTCAA+GGG | 0.619244 | 2_1:-70818764 | Msa0221950:CDS |
| AATAGGAGAAGACATTGCTA+AGG | 0.619503 | 2_1:+70819513 | None:intergenic |
| TGCTGGGAAGAAGAGAAGAG+TGG | 0.622841 | 2_1:+70817332 | None:intergenic |
| ATGACAAGTGCAGATGCCGA+AGG | 0.627144 | 2_1:-70819616 | Msa0221950:CDS |
| CAAGAGAGTCAATACTGCGA+AGG | 0.629198 | 2_1:+70817545 | None:intergenic |
| TCTTGACAAGGATCAACGCA+GGG | 0.634558 | 2_1:+70819194 | None:intergenic |
| CTTGTAATAGCCAAGATGGA+CGG | 0.635238 | 2_1:-70817526 | Msa0221950:CDS |
| TTGATGCTTCCTGAAATACT+GGG | 0.651591 | 2_1:+70818777 | None:intergenic |
| AACACAAAATGAGCATCCCA+GGG | 0.664470 | 2_1:-70817503 | Msa0221950:CDS |
| GTGACTGCCAAAGACTGGAA+GGG | 0.669869 | 2_1:+70819535 | None:intergenic |
| TCGTCAGGCAGCGATTGAGG+TGG | 0.678982 | 2_1:+70819591 | None:intergenic |
| TGTTGGCAATGGCCACACCA+AGG | 0.684405 | 2_1:+70817601 | None:intergenic |
| TGAGAGTGAGGAGCTAGCTG+CGG | 0.699295 | 2_1:-70819305 | Msa0221950:CDS |
| ATGCAGGTACTTGCATACAC+CGG | 0.700002 | 2_1:-70818155 | Msa0221950:intron |
| CTGGGAAGAAGAGAAGAGTG+GGG | 0.702683 | 2_1:+70817334 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAGATTATATTATAATA+AGG | + | chr2_1:70817734-70817753 | None:intergenic | 10.0% |
| !! | TTATTATAATATAATCTCAT+TGG | - | chr2_1:70817733-70817752 | Msa0221950:CDS | 10.0% |
| !!! | GAAAAATAAATAATTACTTT+TGG | + | chr2_1:70818369-70818388 | None:intergenic | 10.0% |
| !! | ATCTTGTATTGTTAATTTAA+TGG | - | chr2_1:70818997-70819016 | Msa0221950:CDS | 15.0% |
| !! | NNNNNNNNTGCACAATATGT+AGG | - | chr2_1:70817313-70817332 | Msa0221950:CDS | 20.0% |
| !! | NNNNNNNTGCACAATATGTA+GGG | - | chr2_1:70817314-70817333 | Msa0221950:CDS | 20.0% |
| !! | AGAAATTAAACAAACCAAAA+TGG | + | chr2_1:70817496-70817515 | None:intergenic | 20.0% |
| !!! | ATTACATCTTTTGAATAACT+TGG | - | chr2_1:70818436-70818455 | Msa0221950:intron | 20.0% |
| !! | AGTTAACAAAACATAATTGA+TGG | + | chr2_1:70818802-70818821 | None:intergenic | 20.0% |
| !!! | TCAATTATGTTTTGTTAACT+TGG | - | chr2_1:70818802-70818821 | Msa0221950:CDS | 20.0% |
| !! | AATATAACTGGTAAAATAGA+GGG | + | chr2_1:70818958-70818977 | None:intergenic | 20.0% |
| !! | AAATATAACTGGTAAAATAG+AGG | + | chr2_1:70818959-70818978 | None:intergenic | 20.0% |
| !! | TGTATTGTTAATTTAATGGT+TGG | - | chr2_1:70819001-70819020 | Msa0221950:CDS | 20.0% |
| !! | AAGATTGATCAATAAGTTAT+TGG | + | chr2_1:70819259-70819278 | None:intergenic | 20.0% |
| !!! | AATGTCTTCTCCTATTTTTT+TGG | - | chr2_1:70817139-70817158 | Msa0221950:CDS | 25.0% |
| !!! | ATGTCTTCTCCTATTTTTTT+GGG | - | chr2_1:70817140-70817159 | Msa0221950:CDS | 25.0% |
| !! | ATTGGATTTTCAAAGATTGT+TGG | + | chr2_1:70817681-70817700 | None:intergenic | 25.0% |
| !! | ATAATTACCTGTTTCTTGAT+TGG | + | chr2_1:70817699-70817718 | None:intergenic | 25.0% |
| !!! | ATGTTTGAAACTTCTTTTTC+AGG | - | chr2_1:70817805-70817824 | Msa0221950:intron | 25.0% |
| !!! | ACTTTCATCTTGTCATTTTT+TGG | - | chr2_1:70817937-70817956 | Msa0221950:CDS | 25.0% |
| !!! | CTTTCATCTTGTCATTTTTT+GGG | - | chr2_1:70817938-70817957 | Msa0221950:CDS | 25.0% |
| !! | TGATTTTATAAACAGAAGCA+TGG | + | chr2_1:70818080-70818099 | None:intergenic | 25.0% |
| ! | GTATCATCAAATTGAACAAA+GGG | + | chr2_1:70818391-70818410 | None:intergenic | 25.0% |
| ! | CCTCATTAAATGAAAGAAAA+AGG | + | chr2_1:70818641-70818660 | None:intergenic | 25.0% |
| !! | CCTTTTTCTTTCATTTAATG+AGG | - | chr2_1:70818638-70818657 | Msa0221950:intron | 25.0% |
| !! | TCAAATCTTCATTTTATCTC+AGG | - | chr2_1:70818687-70818706 | Msa0221950:intron | 25.0% |
| ! | AAAGTGTAAGCTATTTGATT+TGG | - | chr2_1:70818773-70818792 | Msa0221950:CDS | 25.0% |
| !!! | CAATTTTGATGAAATTGTCT+TGG | - | chr2_1:70818894-70818913 | Msa0221950:intron | 25.0% |
| ! | ATTAGAGATGCAAATATAAC+TGG | + | chr2_1:70818970-70818989 | None:intergenic | 25.0% |
| ! | ATTGTTAATTTAATGGTTGG+TGG | - | chr2_1:70819004-70819023 | Msa0221950:CDS | 25.0% |
| ! | ATTGCTTAATATTCACTTAC+AGG | + | chr2_1:70819357-70819376 | None:intergenic | 25.0% |
| !!! | TGTCTTCTCCTATTTTTTTG+GGG | - | chr2_1:70817141-70817160 | Msa0221950:CDS | 30.0% |
| ! | TATCGAATTTTCCATCTGTA+GGG | + | chr2_1:70817587-70817606 | None:intergenic | 30.0% |
| ! | TTATCGAATTTTCCATCTGT+AGG | + | chr2_1:70817588-70817607 | None:intergenic | 30.0% |
| CTTGTAAAAACTGTTACCAA+AGG | + | chr2_1:70817648-70817667 | None:intergenic | 30.0% | |
| TGAAAATCCAATCAAGAAAC+AGG | - | chr2_1:70817689-70817708 | Msa0221950:intron | 30.0% | |
| CGTATCATCAAATTGAACAA+AGG | + | chr2_1:70818392-70818411 | None:intergenic | 30.0% | |
| GGAAGAAAATTTGTGTTTGA+AGG | - | chr2_1:70818523-70818542 | Msa0221950:intron | 30.0% | |
| AAAATTTGTGTTTGAAGGAG+AGG | - | chr2_1:70818528-70818547 | Msa0221950:intron | 30.0% | |
| ATCATACACATTCTGTAACA+TGG | + | chr2_1:70818616-70818635 | None:intergenic | 30.0% | |
| ! | TTCATTTTATCTCAGGCATT+TGG | - | chr2_1:70818694-70818713 | Msa0221950:intron | 30.0% |
| ! | TCATTTTATCTCAGGCATTT+GGG | - | chr2_1:70818695-70818714 | Msa0221950:intron | 30.0% |
| ATCAAATAGCTTACACTTTC+AGG | + | chr2_1:70818772-70818791 | None:intergenic | 30.0% | |
| ! | GTCTAACATGTTTGTTAACT+CGG | - | chr2_1:70818833-70818852 | Msa0221950:intron | 30.0% |
| AATATCAGATATATGCTCCT+TGG | - | chr2_1:70819027-70819046 | Msa0221950:CDS | 30.0% | |
| !! | TTTGCAAGCTTGTTGTATAT+CGG | + | chr2_1:70819077-70819096 | None:intergenic | 30.0% |
| ! | GCAATGTCTAGTTTGAATTT+GGG | + | chr2_1:70819178-70819197 | None:intergenic | 30.0% |
| ! | AGCAATGTCTAGTTTGAATT+TGG | + | chr2_1:70819179-70819198 | None:intergenic | 30.0% |
| ATCAATAAGTTATTGGATGC+AGG | + | chr2_1:70819252-70819271 | None:intergenic | 30.0% | |
| AATAGGAGAAGACATTGCTA+AGG | + | chr2_1:70817135-70817154 | None:intergenic | 35.0% | |
| !!! | GTCTTCTCCTATTTTTTTGG+GGG | - | chr2_1:70817142-70817161 | Msa0221950:CDS | 35.0% |
| ! | TGTCAATTTTTACCAGACTG+TGG | - | chr2_1:70817382-70817401 | Msa0221950:intron | 35.0% |
| TTGAAAAGCTTTGCAACTTC+AGG | + | chr2_1:70817410-70817429 | None:intergenic | 35.0% | |
| TTTCTTCCTCTTTCTTGACA+AGG | + | chr2_1:70817466-70817485 | None:intergenic | 35.0% | |
| ! | GAAGAAAAGCTCAACCATTT+TGG | - | chr2_1:70817479-70817498 | Msa0221950:intron | 35.0% |
| TGTTACCAAAGGAATCTTGT+TGG | + | chr2_1:70817637-70817656 | None:intergenic | 35.0% | |
| TTGATGCTTCCTGAAATACT+GGG | + | chr2_1:70817871-70817890 | None:intergenic | 35.0% | |
| TTTGATGCTTCCTGAAATAC+TGG | + | chr2_1:70817872-70817891 | None:intergenic | 35.0% | |
| ! | GAAGCATCAAAGTCTTTCAA+GGG | - | chr2_1:70817881-70817900 | Msa0221950:intron | 35.0% |
| ATCAAAGTCTTTCAAGGGAA+AGG | - | chr2_1:70817886-70817905 | Msa0221950:intron | 35.0% | |
| CAAAAACATAAGCACCCTTT+AGG | + | chr2_1:70818226-70818245 | None:intergenic | 35.0% | |
| ! | GAAACTGATAACGAAGATGT+TGG | - | chr2_1:70818303-70818322 | Msa0221950:CDS | 35.0% |
| AAGCCTGTTTCAGATTACTT+CGG | - | chr2_1:70818327-70818346 | Msa0221950:CDS | 35.0% | |
| ! | ATACCGAAGTAATCTGAAAC+AGG | + | chr2_1:70818333-70818352 | None:intergenic | 35.0% |
| TCAGATTACTTCGGTATTAG+TGG | - | chr2_1:70818336-70818355 | Msa0221950:CDS | 35.0% | |
| CAGATTACTTCGGTATTAGT+GGG | - | chr2_1:70818337-70818356 | Msa0221950:CDS | 35.0% | |
| ! | TTTTCTTCCATCATCGTTTC+CGG | + | chr2_1:70818512-70818531 | None:intergenic | 35.0% |
| GGTGACTATTGACAGAATTA+AGG | - | chr2_1:70818549-70818568 | Msa0221950:intron | 35.0% | |
| AGCAAAACTAACAGAGTCTA+AGG | + | chr2_1:70818592-70818611 | None:intergenic | 35.0% | |
| ! | CATTTTATCTCAGGCATTTG+GGG | - | chr2_1:70818696-70818715 | Msa0221950:intron | 35.0% |
| !!! | AAGGTTTTAGCTTGTCTTCA+AGG | + | chr2_1:70818729-70818748 | None:intergenic | 35.0% |
| ! | ATTGGGTCTGACTTGAAAAA+AGG | + | chr2_1:70818748-70818767 | None:intergenic | 35.0% |
| AGCTTACACTTTCAGGAATT+GGG | + | chr2_1:70818765-70818784 | None:intergenic | 35.0% | |
| TAGCTTACACTTTCAGGAAT+TGG | + | chr2_1:70818766-70818785 | None:intergenic | 35.0% | |
| GGTGATGTGAAAATAGTTGT+TGG | - | chr2_1:70818868-70818887 | Msa0221950:intron | 35.0% | |
| AATTGTCTTGGATGAGTCAA+AGG | - | chr2_1:70818906-70818925 | Msa0221950:intron | 35.0% | |
| !! | TGTATATCGGTTCCAAATGT+TGG | + | chr2_1:70819064-70819083 | None:intergenic | 35.0% |
| !! | CAAAACTTTTGTTTCCTGCT+GGG | + | chr2_1:70819332-70819351 | None:intergenic | 35.0% |
| !! | TCAAAACTTTTGTTTCCTGC+TGG | + | chr2_1:70819333-70819352 | None:intergenic | 35.0% |
| ! | CAAAGACTGGAAGGGTATAA+GGG | + | chr2_1:70817105-70817124 | None:intergenic | 40.0% |
| AGTTCACTTGCTCCCAAAAT+CGG | + | chr2_1:70817182-70817201 | None:intergenic | 40.0% | |
| GTTGATCCTTGTCAAGAAAG+AGG | - | chr2_1:70817457-70817476 | Msa0221950:intron | 40.0% | |
| ! | ATTTTCCATCTGTAGGGACA+CGG | + | chr2_1:70817581-70817600 | None:intergenic | 40.0% |
| TACCAAAGGAATCTTGTTGG+AGG | + | chr2_1:70817634-70817653 | None:intergenic | 40.0% | |
| GAAATTGCTCCCAGTATTTC+AGG | - | chr2_1:70817859-70817878 | Msa0221950:intron | 40.0% | |
| !! | GGAAGCATCAAAGTCTTTCA+AGG | - | chr2_1:70817880-70817899 | Msa0221950:intron | 40.0% |
| CTGAATTCTTGTCGAAAGCA+AGG | + | chr2_1:70818010-70818029 | None:intergenic | 40.0% | |
| CTTGCTTTCGACAAGAATTC+AGG | - | chr2_1:70818008-70818027 | Msa0221950:intron | 40.0% | |
| AGGTGTAGTGTACTTCTTAG+TGG | - | chr2_1:70818028-70818047 | Msa0221950:intron | 40.0% | |
| GGTGTAGTGTACTTCTTAGT+GGG | - | chr2_1:70818029-70818048 | Msa0221950:intron | 40.0% | |
| AAACATAAGCACCCTTTAGG+AGG | + | chr2_1:70818223-70818242 | None:intergenic | 40.0% | |
| AGCACAAAGATCAACTGCAA+TGG | + | chr2_1:70818279-70818298 | None:intergenic | 40.0% | |
| ACCAGTTGAATTTCCAATGC+AGG | - | chr2_1:70818474-70818493 | Msa0221950:intron | 40.0% | |
| ACCTGCATTGGAAATTCAAC+TGG | + | chr2_1:70818478-70818497 | None:intergenic | 40.0% | |
| ! | ACTAACAGAGTCTAAGGCAA+GGG | + | chr2_1:70818586-70818605 | None:intergenic | 40.0% |
| ! | AACTAACAGAGTCTAAGGCA+AGG | + | chr2_1:70818587-70818606 | None:intergenic | 40.0% |
| CTCTCTTGTAATAGCCAAGA+TGG | - | chr2_1:70819115-70819134 | Msa0221950:intron | 40.0% | |
| CTTGTAATAGCCAAGATGGA+CGG | - | chr2_1:70819119-70819138 | Msa0221950:intron | 40.0% | |
| ! | ATTTTGTGTTCCGTCCATCT+TGG | + | chr2_1:70819132-70819151 | None:intergenic | 40.0% |
| AACACAAAATGAGCATCCCA+GGG | - | chr2_1:70819142-70819161 | Msa0221950:intron | 40.0% | |
| ATGTTCACTTTGCAGTCTGA+TGG | - | chr2_1:70819285-70819304 | Msa0221950:CDS | 40.0% | |
| CTGCTTGAGGAACTTGTAAA+AGG | + | chr2_1:70819536-70819555 | None:intergenic | 40.0% | |
| ACATCAGAGCTCTCTGATTT+AGG | + | chr2_1:70819601-70819620 | None:intergenic | 40.0% | |
| !! | GTTGCTACTTTGGTTCTCTT+TGG | + | chr2_1:70819641-70819660 | None:intergenic | 40.0% |
| ! | CCAAAGACTGGAAGGGTATA+AGG | + | chr2_1:70817106-70817125 | None:intergenic | 45.0% |
| CCTTATACCCTTCCAGTCTT+TGG | - | chr2_1:70817103-70817122 | Msa0221950:CDS | 45.0% | |
| GGTCTCTCCCCCAAAAAAAT+AGG | + | chr2_1:70817152-70817171 | None:intergenic | 45.0% | |
| TCTTGACAAGGATCAACGCA+GGG | + | chr2_1:70817454-70817473 | None:intergenic | 45.0% | |
| TTCTTGACAAGGATCAACGC+AGG | + | chr2_1:70817455-70817474 | None:intergenic | 45.0% | |
| CTCCTCCAACAAGATTCCTT+TGG | - | chr2_1:70817629-70817648 | Msa0221950:intron | 45.0% | |
| ATCCAGCTCTTCCTCCTAAA+GGG | - | chr2_1:70818209-70818228 | Msa0221950:intron | 45.0% | |
| GCAGTTGATCTTTGTGCTTG+TGG | - | chr2_1:70818281-70818300 | Msa0221950:intron | 45.0% | |
| GTGTATGCAAGTACCTGCAT+TGG | + | chr2_1:70818490-70818509 | None:intergenic | 45.0% | |
| ATGCAGGTACTTGCATACAC+CGG | - | chr2_1:70818490-70818509 | Msa0221950:intron | 45.0% | |
| TTAACTCGGCGACAGAATGA+TGG | - | chr2_1:70818847-70818866 | Msa0221950:intron | 45.0% | |
| AGGGTCAAAGTTGTACCTCA+AGG | + | chr2_1:70818939-70818958 | None:intergenic | 45.0% | |
| CAGATATATGCTCCTTGGTG+TGG | - | chr2_1:70819032-70819051 | Msa0221950:CDS | 45.0% | |
| TCGGTTCCAAATGTTGGCAA+TGG | + | chr2_1:70819058-70819077 | None:intergenic | 45.0% | |
| CAAGAGAGTCAATACTGCGA+AGG | + | chr2_1:70819103-70819122 | None:intergenic | 45.0% | |
| GAACACAAAATGAGCATCCC+AGG | - | chr2_1:70819141-70819160 | Msa0221950:intron | 45.0% | |
| ! | TTTGGGTTTACCTTTGCCCT+GGG | + | chr2_1:70819161-70819180 | None:intergenic | 45.0% |
| ! | ATTTGGGTTTACCTTTGCCC+TGG | + | chr2_1:70819162-70819181 | None:intergenic | 45.0% |
| !! | CTGGTTTCTGGAGCTTGAAT+GGG | + | chr2_1:70819570-70819589 | None:intergenic | 45.0% |
| TCTGATTTAGGAGTTGAGGC+TGG | + | chr2_1:70819589-70819608 | None:intergenic | 45.0% | |
| GCTCTCTGATTTAGGAGTTG+AGG | + | chr2_1:70819593-70819612 | None:intergenic | 45.0% | |
| ! | ATCAGAGAGCTCTGATGTCA+AGG | - | chr2_1:70819603-70819622 | Msa0221950:CDS | 45.0% |
| ! | TGACATCGCTGTTGCTACTT+TGG | + | chr2_1:70819651-70819670 | None:intergenic | 45.0% |
| AAGTAGCAACAGCGATGTCA+AGG | - | chr2_1:70819651-70819670 | Msa0221950:CDS | 45.0% | |
| GGCATCTGCACTTGTCATCA+AGG | + | chr2_1:70817027-70817046 | None:intergenic | 50.0% | |
| ATGACAAGTGCAGATGCCGA+AGG | - | chr2_1:70817029-70817048 | Msa0221950:CDS | 50.0% | |
| AGCGATTGAGGTGGTTCCTT+CGG | + | chr2_1:70817048-70817067 | None:intergenic | 50.0% | |
| ACGATTCTGCACGATGAGCT+TGG | - | chr2_1:70817073-70817092 | Msa0221950:CDS | 50.0% | |
| GTGACTGCCAAAGACTGGAA+GGG | + | chr2_1:70817113-70817132 | None:intergenic | 50.0% | |
| CTAAGGTGACTGCCAAAGAC+TGG | + | chr2_1:70817118-70817137 | None:intergenic | 50.0% | |
| !! | AGACCGAGTGGACCGATTTT+GGG | - | chr2_1:70817167-70817186 | Msa0221950:intron | 50.0% |
| TATGTAGGGTCCTGAGAGTG+AGG | - | chr2_1:70817328-70817347 | Msa0221950:CDS | 50.0% | |
| CAACTTCAGGATCCACAGTC+TGG | + | chr2_1:70817397-70817416 | None:intergenic | 50.0% | |
| GATCCAGCTCTTCCTCCTAA+AGG | - | chr2_1:70818208-70818227 | Msa0221950:intron | 50.0% | |
| GCATACACCGGAAACGATGA+TGG | - | chr2_1:70818502-70818521 | Msa0221950:intron | 50.0% | |
| GTCAAAGGACGTTCTCCTTG+AGG | - | chr2_1:70818921-70818940 | Msa0221950:intron | 50.0% | |
| GTGTGGCCATTGCCAACATT+TGG | - | chr2_1:70819049-70819068 | Msa0221950:CDS | 50.0% | |
| AAATGAGCATCCCAGGGCAA+AGG | - | chr2_1:70819148-70819167 | Msa0221950:intron | 50.0% | |
| CTGGGAAGAAGAGAAGAGTG+GGG | + | chr2_1:70819314-70819333 | None:intergenic | 50.0% | |
| GCTGGGAAGAAGAGAAGAGT+GGG | + | chr2_1:70819315-70819334 | None:intergenic | 50.0% | |
| TGCTGGGAAGAAGAGAAGAG+TGG | + | chr2_1:70819316-70819335 | None:intergenic | 50.0% | |
| ACTCTTCTCTTCTTCCCAGC+AGG | - | chr2_1:70819315-70819334 | Msa0221950:intron | 50.0% | |
| GATCACTCTCGCACACACAT+GGG | + | chr2_1:70819425-70819444 | None:intergenic | 50.0% | |
| AGATCACTCTCGCACACACA+TGG | + | chr2_1:70819426-70819445 | None:intergenic | 50.0% | |
| GTGCGAGAGTGATCTGCATA+TGG | - | chr2_1:70819431-70819450 | Msa0221950:intron | 50.0% | |
| ! | GGATTGATGCATGCTGCTTG+AGG | + | chr2_1:70819549-70819568 | None:intergenic | 50.0% |
| !! | GCTGGTTTCTGGAGCTTGAA+TGG | + | chr2_1:70819571-70819590 | None:intergenic | 50.0% |
| !! | TAGGAGTTGAGGCTGGTTTC+TGG | + | chr2_1:70819582-70819601 | None:intergenic | 50.0% |
| GTCTTCTTGCGGTCACGTTC+AGG | - | chr2_1:70816990-70817009 | Msa0221950:CDS | 55.0% | |
| GAATCGTCAGGCAGCGATTG+AGG | + | chr2_1:70817060-70817079 | None:intergenic | 55.0% | |
| GCTCATCGTGCAGAATCGTC+AGG | + | chr2_1:70817072-70817091 | None:intergenic | 55.0% | |
| GGTGACTGCCAAAGACTGGA+AGG | + | chr2_1:70817114-70817133 | None:intergenic | 55.0% | |
| !! | TTTTTGGGGGAGAGACCGAG+TGG | - | chr2_1:70817155-70817174 | Msa0221950:intron | 55.0% |
| !! | GAGACCGAGTGGACCGATTT+TGG | - | chr2_1:70817166-70817185 | Msa0221950:intron | 55.0% |
| GCTCCCAAAATCGGTCCACT+CGG | + | chr2_1:70817173-70817192 | None:intergenic | 55.0% | |
| TGAGAGTGAGGAGCTAGCTG+CGG | - | chr2_1:70817340-70817359 | Msa0221950:CDS | 55.0% | |
| ! | AAGGATCAACGCAGGGCGTT+TGG | + | chr2_1:70817447-70817466 | None:intergenic | 55.0% |
| GTTCACCGTGTCCCTACAGA+TGG | - | chr2_1:70817573-70817592 | Msa0221950:CDS | 55.0% | |
| ! | CACCCTTTAGGAGGAAGAGC+TGG | + | chr2_1:70818214-70818233 | None:intergenic | 55.0% |
| TGTTGGCAATGGCCACACCA+AGG | + | chr2_1:70819047-70819066 | None:intergenic | 55.0% | |
| TCGTCAGGCAGCGATTGAGG+TGG | + | chr2_1:70817057-70817076 | None:intergenic | 60.0% | |
| GCAGCTAGCTCCTCACTCTC+AGG | + | chr2_1:70817341-70817360 | None:intergenic | 60.0% | |
| AGCTGCGGCTTCACGTCTTG+AGG | - | chr2_1:70817355-70817374 | Msa0221950:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 70816983 | 70819684 | 70816983 | ID=Msa0221950;Name=Msa0221950 |
| chr2_1 | mRNA | 70816983 | 70819684 | 70816983 | ID=Msa0221950-mRNA-1;Parent=Msa0221950;Name=Msa0221950-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|0.90|1|1|11|0|403 |
| chr2_1 | exon | 70819526 | 70819684 | 70819526 | ID=Msa0221950-mRNA-1:exon:20357;Parent=Msa0221950-mRNA-1 |
| chr2_1 | exon | 70819167 | 70819332 | 70819167 | ID=Msa0221950-mRNA-1:exon:20356;Parent=Msa0221950-mRNA-1 |
| chr2_1 | exon | 70818957 | 70819075 | 70818957 | ID=Msa0221950-mRNA-1:exon:20355;Parent=Msa0221950-mRNA-1 |
| chr2_1 | exon | 70818760 | 70818840 | 70818760 | ID=Msa0221950-mRNA-1:exon:20354;Parent=Msa0221950-mRNA-1 |
| chr2_1 | exon | 70818296 | 70818382 | 70818296 | ID=Msa0221950-mRNA-1:exon:20353;Parent=Msa0221950-mRNA-1 |
| chr2_1 | exon | 70818097 | 70818171 | 70818097 | ID=Msa0221950-mRNA-1:exon:20352;Parent=Msa0221950-mRNA-1 |
| chr2_1 | exon | 70817890 | 70817958 | 70817890 | ID=Msa0221950-mRNA-1:exon:20351;Parent=Msa0221950-mRNA-1 |
| chr2_1 | exon | 70817725 | 70817805 | 70817725 | ID=Msa0221950-mRNA-1:exon:20350;Parent=Msa0221950-mRNA-1 |
| chr2_1 | exon | 70817498 | 70817632 | 70817498 | ID=Msa0221950-mRNA-1:exon:20349;Parent=Msa0221950-mRNA-1 |
| chr2_1 | exon | 70817311 | 70817367 | 70817311 | ID=Msa0221950-mRNA-1:exon:20348;Parent=Msa0221950-mRNA-1 |
| chr2_1 | exon | 70816983 | 70817165 | 70816983 | ID=Msa0221950-mRNA-1:exon:20347;Parent=Msa0221950-mRNA-1 |
| chr2_1 | CDS | 70819526 | 70819684 | 70819526 | ID=Msa0221950-mRNA-1:cds;Parent=Msa0221950-mRNA-1 |
| chr2_1 | CDS | 70819167 | 70819332 | 70819167 | ID=Msa0221950-mRNA-1:cds;Parent=Msa0221950-mRNA-1 |
| chr2_1 | CDS | 70818957 | 70819075 | 70818957 | ID=Msa0221950-mRNA-1:cds;Parent=Msa0221950-mRNA-1 |
| chr2_1 | CDS | 70818760 | 70818840 | 70818760 | ID=Msa0221950-mRNA-1:cds;Parent=Msa0221950-mRNA-1 |
| chr2_1 | CDS | 70818296 | 70818382 | 70818296 | ID=Msa0221950-mRNA-1:cds;Parent=Msa0221950-mRNA-1 |
| chr2_1 | CDS | 70818097 | 70818171 | 70818097 | ID=Msa0221950-mRNA-1:cds;Parent=Msa0221950-mRNA-1 |
| chr2_1 | CDS | 70817890 | 70817958 | 70817890 | ID=Msa0221950-mRNA-1:cds;Parent=Msa0221950-mRNA-1 |
| chr2_1 | CDS | 70817725 | 70817805 | 70817725 | ID=Msa0221950-mRNA-1:cds;Parent=Msa0221950-mRNA-1 |
| chr2_1 | CDS | 70817498 | 70817632 | 70817498 | ID=Msa0221950-mRNA-1:cds;Parent=Msa0221950-mRNA-1 |
| chr2_1 | CDS | 70817311 | 70817367 | 70817311 | ID=Msa0221950-mRNA-1:cds;Parent=Msa0221950-mRNA-1 |
| chr2_1 | CDS | 70816983 | 70817165 | 70816983 | ID=Msa0221950-mRNA-1:cds;Parent=Msa0221950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
